xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision ad16ce7a71610727ce6f7208f881cce3c308c3ed)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
8baa3c1c6SHong Zhang #include <petscblaslapack.h>
98965ea79SLois Curfman McInnes 
10ab92ecdeSBarry Smith /*@
11ab92ecdeSBarry Smith 
12ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
13ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
14ab92ecdeSBarry Smith 
15ab92ecdeSBarry Smith     Input Parameter:
16ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith     Output Parameter:
19ab92ecdeSBarry Smith .      B - the inner matrix
20ab92ecdeSBarry Smith 
218e6c10adSSatish Balay     Level: intermediate
228e6c10adSSatish Balay 
23ab92ecdeSBarry Smith @*/
24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
25ab92ecdeSBarry Smith {
26ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
27ab92ecdeSBarry Smith   PetscErrorCode ierr;
28ace3abfcSBarry Smith   PetscBool      flg;
29ab92ecdeSBarry Smith 
30ab92ecdeSBarry Smith   PetscFunctionBegin;
31d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32d5ea218eSStefano Zampini   PetscValidPointer(B,2);
33251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
342205254eSKarl Rupp   if (flg) *B = mat->A;
352205254eSKarl Rupp   else *B = A;
36ab92ecdeSBarry Smith   PetscFunctionReturn(0);
37ab92ecdeSBarry Smith }
38ab92ecdeSBarry Smith 
39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
40ba8c8a56SBarry Smith {
41ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
42ba8c8a56SBarry Smith   PetscErrorCode ierr;
43d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
44ba8c8a56SBarry Smith 
45ba8c8a56SBarry Smith   PetscFunctionBegin;
46e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
47ba8c8a56SBarry Smith   lrow = row - rstart;
48ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
49ba8c8a56SBarry Smith   PetscFunctionReturn(0);
50ba8c8a56SBarry Smith }
51ba8c8a56SBarry Smith 
52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
53ba8c8a56SBarry Smith {
54637a0070SStefano Zampini   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
55ba8c8a56SBarry Smith   PetscErrorCode ierr;
56637a0070SStefano Zampini   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
57ba8c8a56SBarry Smith 
58ba8c8a56SBarry Smith   PetscFunctionBegin;
59637a0070SStefano Zampini   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
60637a0070SStefano Zampini   lrow = row - rstart;
61637a0070SStefano Zampini   ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
62ba8c8a56SBarry Smith   PetscFunctionReturn(0);
63ba8c8a56SBarry Smith }
64ba8c8a56SBarry Smith 
6511bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
660de54da6SSatish Balay {
670de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
686849ba73SBarry Smith   PetscErrorCode ierr;
69d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
7087828ca2SBarry Smith   PetscScalar    *array;
710de54da6SSatish Balay   MPI_Comm       comm;
724b6ae80fSStefano Zampini   PetscBool      flg;
7311bd1e4dSLisandro Dalcin   Mat            B;
740de54da6SSatish Balay 
750de54da6SSatish Balay   PetscFunctionBegin;
764b6ae80fSStefano Zampini   ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr);
774b6ae80fSStefano Zampini   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
7811bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
794b6ae80fSStefano Zampini   if (!B) { /* This should use a new function, e.g. MatDenseGetSubMatrix (not create) */
804b6ae80fSStefano Zampini 
814b6ae80fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr);
824b6ae80fSStefano Zampini     if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA);
830de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
8611bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
874b6ae80fSStefano Zampini     ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
8811bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
894b6ae80fSStefano Zampini     ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
9011bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9111bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9211bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
9311bd1e4dSLisandro Dalcin     *a   = B;
9411bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
952205254eSKarl Rupp   } else *a = B;
960de54da6SSatish Balay   PetscFunctionReturn(0);
970de54da6SSatish Balay }
980de54da6SSatish Balay 
9913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1008965ea79SLois Curfman McInnes {
10139b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
102dfbe8321SBarry Smith   PetscErrorCode ierr;
103d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
104ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1058965ea79SLois Curfman McInnes 
1063a40ed3dSBarry Smith   PetscFunctionBegin;
1078965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1085ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
109e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1108965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1118965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
11239b7565bSBarry Smith       if (roworiented) {
11339b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1143a40ed3dSBarry Smith       } else {
1158965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1165ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
117e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11839b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11939b7565bSBarry Smith         }
1208965ea79SLois Curfman McInnes       }
1212205254eSKarl Rupp     } else if (!A->donotstash) {
1225080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
12339b7565bSBarry Smith       if (roworiented) {
124b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
125d36fbae8SSatish Balay       } else {
126b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
12739b7565bSBarry Smith       }
128b49de8d1SLois Curfman McInnes     }
129b49de8d1SLois Curfman McInnes   }
1303a40ed3dSBarry Smith   PetscFunctionReturn(0);
131b49de8d1SLois Curfman McInnes }
132b49de8d1SLois Curfman McInnes 
13313f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
134b49de8d1SLois Curfman McInnes {
135b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
136dfbe8321SBarry Smith   PetscErrorCode ierr;
137d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
138b49de8d1SLois Curfman McInnes 
1393a40ed3dSBarry Smith   PetscFunctionBegin;
140b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
141e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
142e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
143b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
144b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
145b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
146e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
147e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
148b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
149b49de8d1SLois Curfman McInnes       }
150e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1518965ea79SLois Curfman McInnes   }
1523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1538965ea79SLois Curfman McInnes }
1548965ea79SLois Curfman McInnes 
15549a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
15649a6ff4bSBarry Smith {
15749a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
15849a6ff4bSBarry Smith   PetscErrorCode ierr;
15949a6ff4bSBarry Smith 
16049a6ff4bSBarry Smith   PetscFunctionBegin;
16149a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
16249a6ff4bSBarry Smith   PetscFunctionReturn(0);
16349a6ff4bSBarry Smith }
16449a6ff4bSBarry Smith 
165*ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda)
166*ad16ce7aSStefano Zampini {
167*ad16ce7aSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
168*ad16ce7aSStefano Zampini   PetscErrorCode ierr;
169*ad16ce7aSStefano Zampini 
170*ad16ce7aSStefano Zampini   PetscFunctionBegin;
171*ad16ce7aSStefano Zampini   ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr);
172*ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
173*ad16ce7aSStefano Zampini }
174*ad16ce7aSStefano Zampini 
175637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array)
176ff14e315SSatish Balay {
177ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
178dfbe8321SBarry Smith   PetscErrorCode ierr;
179ff14e315SSatish Balay 
1803a40ed3dSBarry Smith   PetscFunctionBegin;
1818c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1823a40ed3dSBarry Smith   PetscFunctionReturn(0);
183ff14e315SSatish Balay }
184ff14e315SSatish Balay 
185637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array)
1868572280aSBarry Smith {
1878572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1888572280aSBarry Smith   PetscErrorCode ierr;
1898572280aSBarry Smith 
1908572280aSBarry Smith   PetscFunctionBegin;
1918572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1928572280aSBarry Smith   PetscFunctionReturn(0);
1938572280aSBarry Smith }
1948572280aSBarry Smith 
1956947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array)
1966947451fSStefano Zampini {
1976947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1986947451fSStefano Zampini   PetscErrorCode ierr;
1996947451fSStefano Zampini 
2006947451fSStefano Zampini   PetscFunctionBegin;
2016947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr);
2026947451fSStefano Zampini   PetscFunctionReturn(0);
2036947451fSStefano Zampini }
2046947451fSStefano Zampini 
205637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array)
206d3042a70SBarry Smith {
207d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
208d3042a70SBarry Smith   PetscErrorCode ierr;
209d3042a70SBarry Smith 
210d3042a70SBarry Smith   PetscFunctionBegin;
2116947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
212d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
213d3042a70SBarry Smith   PetscFunctionReturn(0);
214d3042a70SBarry Smith }
215d3042a70SBarry Smith 
216d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
217d3042a70SBarry Smith {
218d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
219d3042a70SBarry Smith   PetscErrorCode ierr;
220d3042a70SBarry Smith 
221d3042a70SBarry Smith   PetscFunctionBegin;
2226947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
223d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
224d3042a70SBarry Smith   PetscFunctionReturn(0);
225d3042a70SBarry Smith }
226d3042a70SBarry Smith 
227d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array)
228d5ea218eSStefano Zampini {
229d5ea218eSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
230d5ea218eSStefano Zampini   PetscErrorCode ierr;
231d5ea218eSStefano Zampini 
232d5ea218eSStefano Zampini   PetscFunctionBegin;
233d5ea218eSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
234d5ea218eSStefano Zampini   ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr);
235d5ea218eSStefano Zampini   PetscFunctionReturn(0);
236d5ea218eSStefano Zampini }
237d5ea218eSStefano Zampini 
2387dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
239ca3fa75bSLois Curfman McInnes {
240ca3fa75bSLois Curfman McInnes   Mat_MPIDense      *mat  = (Mat_MPIDense*)A->data,*newmatd;
2416849ba73SBarry Smith   PetscErrorCode    ierr;
242637a0070SStefano Zampini   PetscInt          lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2435d0c19d7SBarry Smith   const PetscInt    *irow,*icol;
244637a0070SStefano Zampini   const PetscScalar *v;
245637a0070SStefano Zampini   PetscScalar       *bv;
246ca3fa75bSLois Curfman McInnes   Mat               newmat;
2474aa3045dSJed Brown   IS                iscol_local;
24842a884f0SBarry Smith   MPI_Comm          comm_is,comm_mat;
249ca3fa75bSLois Curfman McInnes 
250ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
25142a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
25242a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
25342a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
25442a884f0SBarry Smith 
2554aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
256ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2574aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
258b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
259b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2604aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
261ca3fa75bSLois Curfman McInnes 
262ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2637eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2647eba5e9cSLois Curfman McInnes      original matrix! */
265ca3fa75bSLois Curfman McInnes 
266ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2677eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
268ca3fa75bSLois Curfman McInnes 
269ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
270ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
271e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2727eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
273ca3fa75bSLois Curfman McInnes     newmat = *B;
274ca3fa75bSLois Curfman McInnes   } else {
275ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
276ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2774aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2787adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2790298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
280ca3fa75bSLois Curfman McInnes   }
281ca3fa75bSLois Curfman McInnes 
282ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
283ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
284637a0070SStefano Zampini   ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr);
285637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr);
286637a0070SStefano Zampini   ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr);
2874aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
288637a0070SStefano Zampini     const PetscScalar *av = v + lda*icol[i];
289ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2907eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
291ca3fa75bSLois Curfman McInnes     }
292ca3fa75bSLois Curfman McInnes   }
293637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr);
294637a0070SStefano Zampini   ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr);
295ca3fa75bSLois Curfman McInnes 
296ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
297ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
298ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
299ca3fa75bSLois Curfman McInnes 
300ca3fa75bSLois Curfman McInnes   /* Free work space */
301ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
3025bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
30332bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
304ca3fa75bSLois Curfman McInnes   *B   = newmat;
305ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
306ca3fa75bSLois Curfman McInnes }
307ca3fa75bSLois Curfman McInnes 
308637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array)
309ff14e315SSatish Balay {
31073a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
31173a71a0fSBarry Smith   PetscErrorCode ierr;
31273a71a0fSBarry Smith 
3133a40ed3dSBarry Smith   PetscFunctionBegin;
3148c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
3153a40ed3dSBarry Smith   PetscFunctionReturn(0);
316ff14e315SSatish Balay }
317ff14e315SSatish Balay 
318637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array)
3198572280aSBarry Smith {
3208572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3218572280aSBarry Smith   PetscErrorCode ierr;
3228572280aSBarry Smith 
3238572280aSBarry Smith   PetscFunctionBegin;
3248572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
3258572280aSBarry Smith   PetscFunctionReturn(0);
3268572280aSBarry Smith }
3278572280aSBarry Smith 
3286947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array)
3296947451fSStefano Zampini {
3306947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3316947451fSStefano Zampini   PetscErrorCode ierr;
3326947451fSStefano Zampini 
3336947451fSStefano Zampini   PetscFunctionBegin;
3346947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr);
3356947451fSStefano Zampini   PetscFunctionReturn(0);
3366947451fSStefano Zampini }
3376947451fSStefano Zampini 
338dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
3398965ea79SLois Curfman McInnes {
34039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
341dfbe8321SBarry Smith   PetscErrorCode ierr;
34213f74950SBarry Smith   PetscInt       nstash,reallocs;
3438965ea79SLois Curfman McInnes 
3443a40ed3dSBarry Smith   PetscFunctionBegin;
345910cf402Sprj-   if (mdn->donotstash || mat->nooffprocentries) return(0);
3468965ea79SLois Curfman McInnes 
347d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3488798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
349ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3503a40ed3dSBarry Smith   PetscFunctionReturn(0);
3518965ea79SLois Curfman McInnes }
3528965ea79SLois Curfman McInnes 
353dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3548965ea79SLois Curfman McInnes {
35539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3566849ba73SBarry Smith   PetscErrorCode ierr;
35713f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
35813f74950SBarry Smith   PetscMPIInt    n;
35987828ca2SBarry Smith   PetscScalar    *val;
3608965ea79SLois Curfman McInnes 
3613a40ed3dSBarry Smith   PetscFunctionBegin;
362910cf402Sprj-   if (!mdn->donotstash && !mat->nooffprocentries) {
3638965ea79SLois Curfman McInnes     /*  wait on receives */
3647ef1d9bdSSatish Balay     while (1) {
3658798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3667ef1d9bdSSatish Balay       if (!flg) break;
3678965ea79SLois Curfman McInnes 
3687ef1d9bdSSatish Balay       for (i=0; i<n;) {
3697ef1d9bdSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
3702205254eSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
3712205254eSKarl Rupp           if (row[j] != rstart) break;
3722205254eSKarl Rupp         }
3737ef1d9bdSSatish Balay         if (j < n) ncols = j-i;
3747ef1d9bdSSatish Balay         else       ncols = n-i;
3757ef1d9bdSSatish Balay         /* Now assemble all these values with a single function call */
3764b4eb8d3SJed Brown         ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3777ef1d9bdSSatish Balay         i    = j;
3788965ea79SLois Curfman McInnes       }
3797ef1d9bdSSatish Balay     }
3808798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
381910cf402Sprj-   }
3828965ea79SLois Curfman McInnes 
38339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
38439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3858965ea79SLois Curfman McInnes 
3866d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
38739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3888965ea79SLois Curfman McInnes   }
3893a40ed3dSBarry Smith   PetscFunctionReturn(0);
3908965ea79SLois Curfman McInnes }
3918965ea79SLois Curfman McInnes 
392dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3938965ea79SLois Curfman McInnes {
394dfbe8321SBarry Smith   PetscErrorCode ierr;
39539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3963a40ed3dSBarry Smith 
3973a40ed3dSBarry Smith   PetscFunctionBegin;
3983a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3993a40ed3dSBarry Smith   PetscFunctionReturn(0);
4008965ea79SLois Curfman McInnes }
4018965ea79SLois Curfman McInnes 
402637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
4038965ea79SLois Curfman McInnes {
40439ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
4056849ba73SBarry Smith   PetscErrorCode    ierr;
406637a0070SStefano Zampini   PetscInt          i,len,*lrows;
407637a0070SStefano Zampini 
408637a0070SStefano Zampini   PetscFunctionBegin;
409637a0070SStefano Zampini   /* get locally owned rows */
410637a0070SStefano Zampini   ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr);
411637a0070SStefano Zampini   /* fix right hand side if needed */
412637a0070SStefano Zampini   if (x && b) {
41397b48c8fSBarry Smith     const PetscScalar *xx;
41497b48c8fSBarry Smith     PetscScalar       *bb;
4158965ea79SLois Curfman McInnes 
41697b48c8fSBarry Smith     ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr);
417637a0070SStefano Zampini     ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr);
418637a0070SStefano Zampini     for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]];
41997b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr);
420637a0070SStefano Zampini     ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr);
42197b48c8fSBarry Smith   }
422637a0070SStefano Zampini   ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
423e2eb51b1SBarry Smith   if (diag != 0.0) {
424637a0070SStefano Zampini     Vec d;
425b9679d65SBarry Smith 
426637a0070SStefano Zampini     ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr);
427637a0070SStefano Zampini     ierr = VecSet(d,diag);CHKERRQ(ierr);
428637a0070SStefano Zampini     ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr);
429637a0070SStefano Zampini     ierr = VecDestroy(&d);CHKERRQ(ierr);
430b9679d65SBarry Smith   }
431606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4323a40ed3dSBarry Smith   PetscFunctionReturn(0);
4338965ea79SLois Curfman McInnes }
4348965ea79SLois Curfman McInnes 
435cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
436cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
437cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
438cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
439cc2e6a90SBarry Smith 
440dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4418965ea79SLois Curfman McInnes {
44239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
443dfbe8321SBarry Smith   PetscErrorCode    ierr;
444637a0070SStefano Zampini   const PetscScalar *ax;
445637a0070SStefano Zampini   PetscScalar       *ay;
446c456f294SBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
448637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
449637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
450637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
451637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
452637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
453637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
454637a0070SStefano Zampini   ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4553a40ed3dSBarry Smith   PetscFunctionReturn(0);
4568965ea79SLois Curfman McInnes }
4578965ea79SLois Curfman McInnes 
458dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4598965ea79SLois Curfman McInnes {
46039ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
461dfbe8321SBarry Smith   PetscErrorCode    ierr;
462637a0070SStefano Zampini   const PetscScalar *ax;
463637a0070SStefano Zampini   PetscScalar       *ay;
464c456f294SBarry Smith 
4653a40ed3dSBarry Smith   PetscFunctionBegin;
466637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
467637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
468637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
469637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
470637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
471637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
472637a0070SStefano Zampini   ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4733a40ed3dSBarry Smith   PetscFunctionReturn(0);
4748965ea79SLois Curfman McInnes }
4758965ea79SLois Curfman McInnes 
476dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
477096963f5SLois Curfman McInnes {
478096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
479dfbe8321SBarry Smith   PetscErrorCode    ierr;
480637a0070SStefano Zampini   const PetscScalar *ax;
481637a0070SStefano Zampini   PetscScalar       *ay;
482096963f5SLois Curfman McInnes 
4833a40ed3dSBarry Smith   PetscFunctionBegin;
484637a0070SStefano Zampini   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
485637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
486637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
487637a0070SStefano Zampini   ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr);
488637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
489637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
490637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
491637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr);
4923a40ed3dSBarry Smith   PetscFunctionReturn(0);
493096963f5SLois Curfman McInnes }
494096963f5SLois Curfman McInnes 
495dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
496096963f5SLois Curfman McInnes {
497096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
498dfbe8321SBarry Smith   PetscErrorCode    ierr;
499637a0070SStefano Zampini   const PetscScalar *ax;
500637a0070SStefano Zampini   PetscScalar       *ay;
501096963f5SLois Curfman McInnes 
5023a40ed3dSBarry Smith   PetscFunctionBegin;
5033501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
504637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
505637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
506637a0070SStefano Zampini   ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr);
507637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
508637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
509637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
510637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr);
5113a40ed3dSBarry Smith   PetscFunctionReturn(0);
512096963f5SLois Curfman McInnes }
513096963f5SLois Curfman McInnes 
514dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5158965ea79SLois Curfman McInnes {
51639ddd567SLois Curfman McInnes   Mat_MPIDense      *a    = (Mat_MPIDense*)A->data;
517dfbe8321SBarry Smith   PetscErrorCode    ierr;
518637a0070SStefano Zampini   PetscInt          lda,len,i,n,m = A->rmap->n,radd;
51987828ca2SBarry Smith   PetscScalar       *x,zero = 0.0;
520637a0070SStefano Zampini   const PetscScalar *av;
521ed3cc1f0SBarry Smith 
5223a40ed3dSBarry Smith   PetscFunctionBegin;
5232dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5241ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
525096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
526e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
527d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
528d0f46423SBarry Smith   radd = A->rmap->rstart*m;
529637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
530637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
53144cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
532637a0070SStefano Zampini     x[i] = av[radd + i*lda + i];
533096963f5SLois Curfman McInnes   }
534637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
5351ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5363a40ed3dSBarry Smith   PetscFunctionReturn(0);
5378965ea79SLois Curfman McInnes }
5388965ea79SLois Curfman McInnes 
539dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5408965ea79SLois Curfman McInnes {
5413501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
542dfbe8321SBarry Smith   PetscErrorCode ierr;
543ed3cc1f0SBarry Smith 
5443a40ed3dSBarry Smith   PetscFunctionBegin;
545aa482453SBarry Smith #if defined(PETSC_USE_LOG)
546d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5478965ea79SLois Curfman McInnes #endif
5488798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5496bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5506bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
551637a0070SStefano Zampini   ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr);
5526947451fSStefano Zampini   ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr);
55301b82886SBarry Smith 
554bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
555dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5568baccfbdSHong Zhang 
55749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
558*ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
5598baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5608572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5618572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5628572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
5636947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
5646947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
565d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
566d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
567d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
5688baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5698baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5708baccfbdSHong Zhang #endif
571bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
5724222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5734222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
574bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
575bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
57652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr);
57752c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr);
5788baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5798baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
58086aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
58186aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
5826947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
5836947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
5846947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
5856947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
5866947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
5876947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
5883a40ed3dSBarry Smith   PetscFunctionReturn(0);
5898965ea79SLois Curfman McInnes }
59039ddd567SLois Curfman McInnes 
59152c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
59252c5f739Sprj- 
5939804daf3SBarry Smith #include <petscdraw.h>
5946849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
5958965ea79SLois Curfman McInnes {
59639ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
597dfbe8321SBarry Smith   PetscErrorCode    ierr;
5987da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
59919fd82e9SBarry Smith   PetscViewerType   vtype;
600ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
601b0a32e0cSBarry Smith   PetscViewer       sviewer;
602f3ef73ceSBarry Smith   PetscViewerFormat format;
6038965ea79SLois Curfman McInnes 
6043a40ed3dSBarry Smith   PetscFunctionBegin;
605251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
606251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
60732077d6dSBarry Smith   if (iascii) {
608b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
609b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
610456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6114e220ebcSLois Curfman McInnes       MatInfo info;
612888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6131575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6147b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
615b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6161575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
617637a0070SStefano Zampini       ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6183a40ed3dSBarry Smith       PetscFunctionReturn(0);
619fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6203a40ed3dSBarry Smith       PetscFunctionReturn(0);
6218965ea79SLois Curfman McInnes     }
622f1af5d2fSBarry Smith   } else if (isdraw) {
623b0a32e0cSBarry Smith     PetscDraw draw;
624ace3abfcSBarry Smith     PetscBool isnull;
625f1af5d2fSBarry Smith 
626b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
627b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
628f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
629f1af5d2fSBarry Smith   }
63077ed5343SBarry Smith 
6317da1fb6eSBarry Smith   {
6328965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6338965ea79SLois Curfman McInnes     Mat         A;
634d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
635ba8c8a56SBarry Smith     PetscInt    *cols;
636ba8c8a56SBarry Smith     PetscScalar *vals;
6378965ea79SLois Curfman McInnes 
638ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6398965ea79SLois Curfman McInnes     if (!rank) {
640f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6413a40ed3dSBarry Smith     } else {
642f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6438965ea79SLois Curfman McInnes     }
6447adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
645878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
6460298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
6473bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
6488965ea79SLois Curfman McInnes 
64939ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
65039ddd567SLois Curfman McInnes        but it's quick for now */
65151022da4SBarry Smith     A->insertmode = INSERT_VALUES;
6522205254eSKarl Rupp 
6532205254eSKarl Rupp     row = mat->rmap->rstart;
6542205254eSKarl Rupp     m   = mdn->A->rmap->n;
6558965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
656ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
657ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
658ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
65939ddd567SLois Curfman McInnes       row++;
6608965ea79SLois Curfman McInnes     }
6618965ea79SLois Curfman McInnes 
6626d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6636d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6643f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
665b9b97703SBarry Smith     if (!rank) {
6661a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
6677da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
6688965ea79SLois Curfman McInnes     }
6693f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
670b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6716bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
6728965ea79SLois Curfman McInnes   }
6733a40ed3dSBarry Smith   PetscFunctionReturn(0);
6748965ea79SLois Curfman McInnes }
6758965ea79SLois Curfman McInnes 
676dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
6778965ea79SLois Curfman McInnes {
678dfbe8321SBarry Smith   PetscErrorCode ierr;
679ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
6808965ea79SLois Curfman McInnes 
681433994e6SBarry Smith   PetscFunctionBegin;
682251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
683251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
684251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
685251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
6860f5bd95cSBarry Smith 
68732077d6dSBarry Smith   if (iascii || issocket || isdraw) {
688f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
6890f5bd95cSBarry Smith   } else if (isbinary) {
6908491ab44SLisandro Dalcin     ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr);
69111aeaf0aSBarry Smith   }
6923a40ed3dSBarry Smith   PetscFunctionReturn(0);
6938965ea79SLois Curfman McInnes }
6948965ea79SLois Curfman McInnes 
695dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6968965ea79SLois Curfman McInnes {
6973501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
6983501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
699dfbe8321SBarry Smith   PetscErrorCode ierr;
7003966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
7018965ea79SLois Curfman McInnes 
7023a40ed3dSBarry Smith   PetscFunctionBegin;
7034e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7042205254eSKarl Rupp 
7054e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7062205254eSKarl Rupp 
7074e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7084e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7098965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7104e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7114e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7124e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7134e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7144e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7158965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7163966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7172205254eSKarl Rupp 
7184e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7194e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7204e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7214e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7224e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7238965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7243966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7252205254eSKarl Rupp 
7264e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7274e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7284e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7294e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7304e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7318965ea79SLois Curfman McInnes   }
7324e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7334e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7344e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7353a40ed3dSBarry Smith   PetscFunctionReturn(0);
7368965ea79SLois Curfman McInnes }
7378965ea79SLois Curfman McInnes 
738ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7398965ea79SLois Curfman McInnes {
74039ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
741dfbe8321SBarry Smith   PetscErrorCode ierr;
7428965ea79SLois Curfman McInnes 
7433a40ed3dSBarry Smith   PetscFunctionBegin;
74412c028f9SKris Buschelman   switch (op) {
745512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
74612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
74712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
74843674050SBarry Smith     MatCheckPreallocated(A,1);
7494e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
75012c028f9SKris Buschelman     break;
75112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
75243674050SBarry Smith     MatCheckPreallocated(A,1);
7534e0d8c25SBarry Smith     a->roworiented = flg;
7544e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
75512c028f9SKris Buschelman     break;
7564e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
75713fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
75812c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
759071fcb05SBarry Smith   case MAT_SORTED_FULL:
760290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
76112c028f9SKris Buschelman     break;
76212c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
7634e0d8c25SBarry Smith     a->donotstash = flg;
76412c028f9SKris Buschelman     break;
76577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
76677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
7679a4540c5SBarry Smith   case MAT_HERMITIAN:
7689a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
769600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
7705d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
771290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
77277e54ba9SKris Buschelman     break;
77312c028f9SKris Buschelman   default:
774e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
7753a40ed3dSBarry Smith   }
7763a40ed3dSBarry Smith   PetscFunctionReturn(0);
7778965ea79SLois Curfman McInnes }
7788965ea79SLois Curfman McInnes 
779dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
7805b2fa520SLois Curfman McInnes {
7815b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
782637a0070SStefano Zampini   const PetscScalar *l;
783637a0070SStefano Zampini   PetscScalar       x,*v,*vv,*r;
784dfbe8321SBarry Smith   PetscErrorCode    ierr;
785637a0070SStefano Zampini   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda;
7865b2fa520SLois Curfman McInnes 
7875b2fa520SLois Curfman McInnes   PetscFunctionBegin;
788637a0070SStefano Zampini   ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr);
789637a0070SStefano Zampini   ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr);
79072d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
7915b2fa520SLois Curfman McInnes   if (ll) {
79272d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
793637a0070SStefano Zampini     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2);
794bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
7955b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
7965b2fa520SLois Curfman McInnes       x = l[i];
797637a0070SStefano Zampini       v = vv + i;
798637a0070SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= lda;}
7995b2fa520SLois Curfman McInnes     }
800bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
801637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
8025b2fa520SLois Curfman McInnes   }
8035b2fa520SLois Curfman McInnes   if (rr) {
804637a0070SStefano Zampini     const PetscScalar *ar;
805637a0070SStefano Zampini 
806175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
807e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
808637a0070SStefano Zampini     ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr);
809637a0070SStefano Zampini     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
810637a0070SStefano Zampini     ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
811637a0070SStefano Zampini     ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
812637a0070SStefano Zampini     ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr);
8135b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8145b2fa520SLois Curfman McInnes       x = r[i];
815637a0070SStefano Zampini       v = vv + i*lda;
8162205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8175b2fa520SLois Curfman McInnes     }
818637a0070SStefano Zampini     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
819637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
8205b2fa520SLois Curfman McInnes   }
821637a0070SStefano Zampini   ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr);
8225b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8235b2fa520SLois Curfman McInnes }
8245b2fa520SLois Curfman McInnes 
825dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
826096963f5SLois Curfman McInnes {
8273501a2bdSLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
828dfbe8321SBarry Smith   PetscErrorCode    ierr;
82913f74950SBarry Smith   PetscInt          i,j;
830329f5518SBarry Smith   PetscReal         sum = 0.0;
831637a0070SStefano Zampini   const PetscScalar *av,*v;
8323501a2bdSLois Curfman McInnes 
8333a40ed3dSBarry Smith   PetscFunctionBegin;
834637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr);
835637a0070SStefano Zampini   v    = av;
8363501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
837064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8383501a2bdSLois Curfman McInnes   } else {
8393501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
840d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
841329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8423501a2bdSLois Curfman McInnes       }
843b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8448f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
845dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8463a40ed3dSBarry Smith     } else if (type == NORM_1) {
847329f5518SBarry Smith       PetscReal *tmp,*tmp2;
848580bdb30SBarry Smith       ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
849064f8208SBarry Smith       *nrm = 0.0;
850637a0070SStefano Zampini       v    = av;
851d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
852d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
85367e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
8543501a2bdSLois Curfman McInnes         }
8553501a2bdSLois Curfman McInnes       }
856b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
857d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
858064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8593501a2bdSLois Curfman McInnes       }
8608627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
861d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
8623a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
863329f5518SBarry Smith       PetscReal ntemp;
8643501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
865b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
866ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
8673501a2bdSLois Curfman McInnes   }
868637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr);
8693a40ed3dSBarry Smith   PetscFunctionReturn(0);
8703501a2bdSLois Curfman McInnes }
8713501a2bdSLois Curfman McInnes 
872fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
8733501a2bdSLois Curfman McInnes {
8743501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
8753501a2bdSLois Curfman McInnes   Mat            B;
876d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
8776849ba73SBarry Smith   PetscErrorCode ierr;
878637a0070SStefano Zampini   PetscInt       j,i,lda;
87987828ca2SBarry Smith   PetscScalar    *v;
8803501a2bdSLois Curfman McInnes 
8813a40ed3dSBarry Smith   PetscFunctionBegin;
882cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
883ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
884d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
8857adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
8860298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
887637a0070SStefano Zampini   } else B = *matout;
8883501a2bdSLois Curfman McInnes 
889637a0070SStefano Zampini   m    = a->A->rmap->n; n = a->A->cmap->n;
890637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
891637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
892785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
8933501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
8941acff37aSSatish Balay   for (j=0; j<n; j++) {
8953501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
896637a0070SStefano Zampini     v   += lda;
8973501a2bdSLois Curfman McInnes   }
898637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
899606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9006d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9016d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
902cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9033501a2bdSLois Curfman McInnes     *matout = B;
9043501a2bdSLois Curfman McInnes   } else {
90528be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9063501a2bdSLois Curfman McInnes   }
9073a40ed3dSBarry Smith   PetscFunctionReturn(0);
908096963f5SLois Curfman McInnes }
909096963f5SLois Curfman McInnes 
9106849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
91152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9128965ea79SLois Curfman McInnes 
9134994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
914273d9f13SBarry Smith {
915dfbe8321SBarry Smith   PetscErrorCode ierr;
916273d9f13SBarry Smith 
917273d9f13SBarry Smith   PetscFunctionBegin;
91818992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
91918992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
92018992e5dSStefano Zampini   if (!A->preallocated) {
921273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
92218992e5dSStefano Zampini   }
923273d9f13SBarry Smith   PetscFunctionReturn(0);
924273d9f13SBarry Smith }
925273d9f13SBarry Smith 
926488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
927488007eeSBarry Smith {
928488007eeSBarry Smith   PetscErrorCode ierr;
929488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
930488007eeSBarry Smith 
931488007eeSBarry Smith   PetscFunctionBegin;
932488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
933488007eeSBarry Smith   PetscFunctionReturn(0);
934488007eeSBarry Smith }
935488007eeSBarry Smith 
9367087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat)
937ba337c44SJed Brown {
938ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
939ba337c44SJed Brown   PetscErrorCode ierr;
940ba337c44SJed Brown 
941ba337c44SJed Brown   PetscFunctionBegin;
942ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
943ba337c44SJed Brown   PetscFunctionReturn(0);
944ba337c44SJed Brown }
945ba337c44SJed Brown 
946ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
947ba337c44SJed Brown {
948ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
949ba337c44SJed Brown   PetscErrorCode ierr;
950ba337c44SJed Brown 
951ba337c44SJed Brown   PetscFunctionBegin;
952ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
953ba337c44SJed Brown   PetscFunctionReturn(0);
954ba337c44SJed Brown }
955ba337c44SJed Brown 
956ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
957ba337c44SJed Brown {
958ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
959ba337c44SJed Brown   PetscErrorCode ierr;
960ba337c44SJed Brown 
961ba337c44SJed Brown   PetscFunctionBegin;
962ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
963ba337c44SJed Brown   PetscFunctionReturn(0);
964ba337c44SJed Brown }
965ba337c44SJed Brown 
96649a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
96749a6ff4bSBarry Smith {
96849a6ff4bSBarry Smith   PetscErrorCode ierr;
969637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
97049a6ff4bSBarry Smith 
97149a6ff4bSBarry Smith   PetscFunctionBegin;
972637a0070SStefano Zampini   if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix");
973637a0070SStefano Zampini   if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation");
974637a0070SStefano Zampini   ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr);
97549a6ff4bSBarry Smith   PetscFunctionReturn(0);
97649a6ff4bSBarry Smith }
97749a6ff4bSBarry Smith 
97852c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
97952c5f739Sprj- 
9800716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
9810716a85fSBarry Smith {
9820716a85fSBarry Smith   PetscErrorCode ierr;
9830716a85fSBarry Smith   PetscInt       i,n;
9840716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
9850716a85fSBarry Smith   PetscReal      *work;
9860716a85fSBarry Smith 
9870716a85fSBarry Smith   PetscFunctionBegin;
9880298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
989785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
9900716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
9910716a85fSBarry Smith   if (type == NORM_2) {
9920716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
9930716a85fSBarry Smith   }
9940716a85fSBarry Smith   if (type == NORM_INFINITY) {
995b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
9960716a85fSBarry Smith   } else {
997b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
9980716a85fSBarry Smith   }
9990716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10000716a85fSBarry Smith   if (type == NORM_2) {
10018f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10020716a85fSBarry Smith   }
10030716a85fSBarry Smith   PetscFunctionReturn(0);
10040716a85fSBarry Smith }
10050716a85fSBarry Smith 
1006637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
10076947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10086947451fSStefano Zampini {
10096947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10106947451fSStefano Zampini   PetscErrorCode ierr;
10116947451fSStefano Zampini   PetscInt       lda;
10126947451fSStefano Zampini 
10136947451fSStefano Zampini   PetscFunctionBegin;
10146947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10156947451fSStefano Zampini   if (!a->cvec) {
10166947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10176947451fSStefano Zampini   }
10186947451fSStefano Zampini   a->vecinuse = col + 1;
10196947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10206947451fSStefano Zampini   ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10216947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10226947451fSStefano Zampini   *v   = a->cvec;
10236947451fSStefano Zampini   PetscFunctionReturn(0);
10246947451fSStefano Zampini }
10256947451fSStefano Zampini 
10266947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10276947451fSStefano Zampini {
10286947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10296947451fSStefano Zampini   PetscErrorCode ierr;
10306947451fSStefano Zampini 
10316947451fSStefano Zampini   PetscFunctionBegin;
10326947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
10336947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10346947451fSStefano Zampini   a->vecinuse = 0;
10356947451fSStefano Zampini   ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10366947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10376947451fSStefano Zampini   *v   = NULL;
10386947451fSStefano Zampini   PetscFunctionReturn(0);
10396947451fSStefano Zampini }
10406947451fSStefano Zampini 
10416947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10426947451fSStefano Zampini {
10436947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10446947451fSStefano Zampini   PetscInt       lda;
10456947451fSStefano Zampini   PetscErrorCode ierr;
10466947451fSStefano Zampini 
10476947451fSStefano Zampini   PetscFunctionBegin;
10486947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10496947451fSStefano Zampini   if (!a->cvec) {
10506947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10516947451fSStefano Zampini   }
10526947451fSStefano Zampini   a->vecinuse = col + 1;
10536947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10546947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
10556947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10566947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
10576947451fSStefano Zampini   *v   = a->cvec;
10586947451fSStefano Zampini   PetscFunctionReturn(0);
10596947451fSStefano Zampini }
10606947451fSStefano Zampini 
10616947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10626947451fSStefano Zampini {
10636947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10646947451fSStefano Zampini   PetscErrorCode ierr;
10656947451fSStefano Zampini 
10666947451fSStefano Zampini   PetscFunctionBegin;
10676947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
10686947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10696947451fSStefano Zampini   a->vecinuse = 0;
10706947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
10716947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
10726947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10736947451fSStefano Zampini   *v   = NULL;
10746947451fSStefano Zampini   PetscFunctionReturn(0);
10756947451fSStefano Zampini }
10766947451fSStefano Zampini 
10776947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10786947451fSStefano Zampini {
10796947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10806947451fSStefano Zampini   PetscErrorCode ierr;
10816947451fSStefano Zampini   PetscInt       lda;
10826947451fSStefano Zampini 
10836947451fSStefano Zampini   PetscFunctionBegin;
10846947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10856947451fSStefano Zampini   if (!a->cvec) {
10866947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10876947451fSStefano Zampini   }
10886947451fSStefano Zampini   a->vecinuse = col + 1;
10896947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10906947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10916947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10926947451fSStefano Zampini   *v   = a->cvec;
10936947451fSStefano Zampini   PetscFunctionReturn(0);
10946947451fSStefano Zampini }
10956947451fSStefano Zampini 
10966947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10976947451fSStefano Zampini {
10986947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10996947451fSStefano Zampini   PetscErrorCode ierr;
11006947451fSStefano Zampini 
11016947451fSStefano Zampini   PetscFunctionBegin;
11026947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
11036947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
11046947451fSStefano Zampini   a->vecinuse = 0;
11056947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
11066947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
11076947451fSStefano Zampini   *v   = NULL;
11086947451fSStefano Zampini   PetscFunctionReturn(0);
11096947451fSStefano Zampini }
11106947451fSStefano Zampini 
1111637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1112637a0070SStefano Zampini {
1113637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1114637a0070SStefano Zampini   PetscErrorCode ierr;
1115637a0070SStefano Zampini 
1116637a0070SStefano Zampini   PetscFunctionBegin;
11176947451fSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1118637a0070SStefano Zampini   ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr);
1119637a0070SStefano Zampini   PetscFunctionReturn(0);
1120637a0070SStefano Zampini }
1121637a0070SStefano Zampini 
1122637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A)
1123637a0070SStefano Zampini {
1124637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1125637a0070SStefano Zampini   PetscErrorCode ierr;
1126637a0070SStefano Zampini 
1127637a0070SStefano Zampini   PetscFunctionBegin;
11286947451fSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1129637a0070SStefano Zampini   ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr);
1130637a0070SStefano Zampini   PetscFunctionReturn(0);
1131637a0070SStefano Zampini }
1132637a0070SStefano Zampini 
1133d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1134d5ea218eSStefano Zampini {
1135d5ea218eSStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1136d5ea218eSStefano Zampini   PetscErrorCode ierr;
1137d5ea218eSStefano Zampini 
1138d5ea218eSStefano Zampini   PetscFunctionBegin;
1139d5ea218eSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1140d5ea218eSStefano Zampini   ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr);
1141d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1142d5ea218eSStefano Zampini }
1143d5ea218eSStefano Zampini 
1144637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1145637a0070SStefano Zampini {
1146637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1147637a0070SStefano Zampini   PetscErrorCode ierr;
1148637a0070SStefano Zampini 
1149637a0070SStefano Zampini   PetscFunctionBegin;
1150637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr);
1151637a0070SStefano Zampini   PetscFunctionReturn(0);
1152637a0070SStefano Zampini }
1153637a0070SStefano Zampini 
1154637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1155637a0070SStefano Zampini {
1156637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1157637a0070SStefano Zampini   PetscErrorCode ierr;
1158637a0070SStefano Zampini 
1159637a0070SStefano Zampini   PetscFunctionBegin;
1160637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr);
1161637a0070SStefano Zampini   PetscFunctionReturn(0);
1162637a0070SStefano Zampini }
1163637a0070SStefano Zampini 
1164637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1165637a0070SStefano Zampini {
1166637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1167637a0070SStefano Zampini   PetscErrorCode ierr;
1168637a0070SStefano Zampini 
1169637a0070SStefano Zampini   PetscFunctionBegin;
1170637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr);
1171637a0070SStefano Zampini   PetscFunctionReturn(0);
1172637a0070SStefano Zampini }
1173637a0070SStefano Zampini 
1174637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1175637a0070SStefano Zampini {
1176637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1177637a0070SStefano Zampini   PetscErrorCode ierr;
1178637a0070SStefano Zampini 
1179637a0070SStefano Zampini   PetscFunctionBegin;
1180637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr);
1181637a0070SStefano Zampini   PetscFunctionReturn(0);
1182637a0070SStefano Zampini }
1183637a0070SStefano Zampini 
1184637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1185637a0070SStefano Zampini {
1186637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1187637a0070SStefano Zampini   PetscErrorCode ierr;
1188637a0070SStefano Zampini 
1189637a0070SStefano Zampini   PetscFunctionBegin;
1190637a0070SStefano Zampini   ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr);
1191637a0070SStefano Zampini   PetscFunctionReturn(0);
1192637a0070SStefano Zampini }
1193637a0070SStefano Zampini 
1194637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1195637a0070SStefano Zampini {
1196637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1197637a0070SStefano Zampini   PetscErrorCode ierr;
1198637a0070SStefano Zampini 
1199637a0070SStefano Zampini   PetscFunctionBegin;
1200637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr);
1201637a0070SStefano Zampini   PetscFunctionReturn(0);
1202637a0070SStefano Zampini }
1203637a0070SStefano Zampini 
12046947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
12056947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
12066947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*);
12076947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
12086947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
12096947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*);
12106947451fSStefano Zampini 
1211637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind)
1212637a0070SStefano Zampini {
1213637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)mat->data;
1214637a0070SStefano Zampini   PetscErrorCode ierr;
1215637a0070SStefano Zampini 
1216637a0070SStefano Zampini   PetscFunctionBegin;
12176947451fSStefano Zampini   if (d->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1218637a0070SStefano Zampini   if (d->A) {
1219637a0070SStefano Zampini     ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr);
1220637a0070SStefano Zampini   }
1221637a0070SStefano Zampini   mat->boundtocpu = bind;
12226947451fSStefano Zampini   if (!bind) {
12236947451fSStefano Zampini     PetscBool iscuda;
12246947451fSStefano Zampini 
12256947451fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr);
12266947451fSStefano Zampini     if (!iscuda) {
12276947451fSStefano Zampini       ierr = VecDestroy(&d->cvec);CHKERRQ(ierr);
12286947451fSStefano Zampini     }
12296947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
12306947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
12316947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
12326947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
12336947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
12346947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
12356947451fSStefano Zampini   } else {
12366947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
12376947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
12386947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
12396947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
12406947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
12416947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
12426947451fSStefano Zampini   }
1243637a0070SStefano Zampini   PetscFunctionReturn(0);
1244637a0070SStefano Zampini }
1245637a0070SStefano Zampini 
1246637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data)
1247637a0070SStefano Zampini {
1248637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)A->data;
1249637a0070SStefano Zampini   PetscErrorCode ierr;
1250637a0070SStefano Zampini   PetscBool      iscuda;
1251637a0070SStefano Zampini 
1252637a0070SStefano Zampini   PetscFunctionBegin;
1253d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1254637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1255637a0070SStefano Zampini   if (!iscuda) PetscFunctionReturn(0);
1256637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
1257637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
1258637a0070SStefano Zampini   if (!d->A) {
1259637a0070SStefano Zampini     ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr);
1260637a0070SStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr);
1261637a0070SStefano Zampini     ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr);
1262637a0070SStefano Zampini   }
1263637a0070SStefano Zampini   ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr);
1264637a0070SStefano Zampini   ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr);
1265637a0070SStefano Zampini   A->preallocated = PETSC_TRUE;
1266637a0070SStefano Zampini   PetscFunctionReturn(0);
1267637a0070SStefano Zampini }
1268637a0070SStefano Zampini #endif
1269637a0070SStefano Zampini 
127073a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
127173a71a0fSBarry Smith {
127273a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
127373a71a0fSBarry Smith   PetscErrorCode ierr;
127473a71a0fSBarry Smith 
127573a71a0fSBarry Smith   PetscFunctionBegin;
1276637a0070SStefano Zampini   ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr);
127773a71a0fSBarry Smith   PetscFunctionReturn(0);
127873a71a0fSBarry Smith }
127973a71a0fSBarry Smith 
128052c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1281fd4e9aacSBarry Smith 
12823b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
12833b49f96aSBarry Smith {
12843b49f96aSBarry Smith   PetscFunctionBegin;
12853b49f96aSBarry Smith   *missing = PETSC_FALSE;
12863b49f96aSBarry Smith   PetscFunctionReturn(0);
12873b49f96aSBarry Smith }
12883b49f96aSBarry Smith 
12894222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
1290cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1291cc48ffa7SToby Isaac 
12928965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
129309dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
129409dc0095SBarry Smith                                         MatGetRow_MPIDense,
129509dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
129609dc0095SBarry Smith                                         MatMult_MPIDense,
129797304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
12987c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
12997c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
13008965ea79SLois Curfman McInnes                                         0,
130109dc0095SBarry Smith                                         0,
130209dc0095SBarry Smith                                         0,
130397304618SKris Buschelman                                 /* 10*/ 0,
130409dc0095SBarry Smith                                         0,
130509dc0095SBarry Smith                                         0,
130609dc0095SBarry Smith                                         0,
130709dc0095SBarry Smith                                         MatTranspose_MPIDense,
130897304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
13096e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
131009dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
13115b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
131209dc0095SBarry Smith                                         MatNorm_MPIDense,
131397304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
131409dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
131509dc0095SBarry Smith                                         MatSetOption_MPIDense,
131609dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1317d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1318919b68f7SBarry Smith                                         0,
131901b82886SBarry Smith                                         0,
132001b82886SBarry Smith                                         0,
132101b82886SBarry Smith                                         0,
13224994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1323273d9f13SBarry Smith                                         0,
132409dc0095SBarry Smith                                         0,
1325c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
13268c778c55SBarry Smith                                         0,
1327d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
132809dc0095SBarry Smith                                         0,
132909dc0095SBarry Smith                                         0,
133009dc0095SBarry Smith                                         0,
133109dc0095SBarry Smith                                         0,
1332d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
13337dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
133409dc0095SBarry Smith                                         0,
133509dc0095SBarry Smith                                         MatGetValues_MPIDense,
133609dc0095SBarry Smith                                         0,
1337d519adbfSMatthew Knepley                                 /* 44*/ 0,
133809dc0095SBarry Smith                                         MatScale_MPIDense,
13397d68702bSBarry Smith                                         MatShift_Basic,
134009dc0095SBarry Smith                                         0,
134109dc0095SBarry Smith                                         0,
134273a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
134309dc0095SBarry Smith                                         0,
134409dc0095SBarry Smith                                         0,
134509dc0095SBarry Smith                                         0,
134609dc0095SBarry Smith                                         0,
1347d519adbfSMatthew Knepley                                 /* 54*/ 0,
134809dc0095SBarry Smith                                         0,
134909dc0095SBarry Smith                                         0,
135009dc0095SBarry Smith                                         0,
135109dc0095SBarry Smith                                         0,
13527dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1353b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1354b9b97703SBarry Smith                                         MatView_MPIDense,
1355357abbc8SBarry Smith                                         0,
135697304618SKris Buschelman                                         0,
1357d519adbfSMatthew Knepley                                 /* 64*/ 0,
135897304618SKris Buschelman                                         0,
135997304618SKris Buschelman                                         0,
136097304618SKris Buschelman                                         0,
136197304618SKris Buschelman                                         0,
1362d519adbfSMatthew Knepley                                 /* 69*/ 0,
136397304618SKris Buschelman                                         0,
136497304618SKris Buschelman                                         0,
136597304618SKris Buschelman                                         0,
136697304618SKris Buschelman                                         0,
1367d519adbfSMatthew Knepley                                 /* 74*/ 0,
136897304618SKris Buschelman                                         0,
136997304618SKris Buschelman                                         0,
137097304618SKris Buschelman                                         0,
137197304618SKris Buschelman                                         0,
1372d519adbfSMatthew Knepley                                 /* 79*/ 0,
137397304618SKris Buschelman                                         0,
137497304618SKris Buschelman                                         0,
137597304618SKris Buschelman                                         0,
13765bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1377865e5f61SKris Buschelman                                         0,
1378865e5f61SKris Buschelman                                         0,
1379865e5f61SKris Buschelman                                         0,
1380865e5f61SKris Buschelman                                         0,
1381865e5f61SKris Buschelman                                         0,
13824222ddf1SHong Zhang                                 /* 89*/ 0,
13834222ddf1SHong Zhang                                         0,
1384fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
13852fbe02b9SBarry Smith                                         0,
1386ba337c44SJed Brown                                         0,
1387d519adbfSMatthew Knepley                                 /* 94*/ 0,
13884222ddf1SHong Zhang                                         0,
13894222ddf1SHong Zhang                                         0,
1390cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1391ba337c44SJed Brown                                         0,
13924222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_MPIDense,
1393ba337c44SJed Brown                                         0,
1394ba337c44SJed Brown                                         0,
1395ba337c44SJed Brown                                         MatConjugate_MPIDense,
1396ba337c44SJed Brown                                         0,
1397ba337c44SJed Brown                                 /*104*/ 0,
1398ba337c44SJed Brown                                         MatRealPart_MPIDense,
1399ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
140086d161a7SShri Abhyankar                                         0,
140186d161a7SShri Abhyankar                                         0,
140286d161a7SShri Abhyankar                                 /*109*/ 0,
140386d161a7SShri Abhyankar                                         0,
140486d161a7SShri Abhyankar                                         0,
140549a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
14063b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
140786d161a7SShri Abhyankar                                 /*114*/ 0,
140886d161a7SShri Abhyankar                                         0,
140986d161a7SShri Abhyankar                                         0,
141086d161a7SShri Abhyankar                                         0,
141186d161a7SShri Abhyankar                                         0,
141286d161a7SShri Abhyankar                                 /*119*/ 0,
141386d161a7SShri Abhyankar                                         0,
141486d161a7SShri Abhyankar                                         0,
14150716a85fSBarry Smith                                         0,
14160716a85fSBarry Smith                                         0,
14170716a85fSBarry Smith                                 /*124*/ 0,
14183964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
14193964eb88SJed Brown                                         0,
14203964eb88SJed Brown                                         0,
14213964eb88SJed Brown                                         0,
14223964eb88SJed Brown                                 /*129*/ 0,
14234222ddf1SHong Zhang                                         0,
14244222ddf1SHong Zhang                                         0,
1425cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
14263964eb88SJed Brown                                         0,
14273964eb88SJed Brown                                 /*134*/ 0,
14283964eb88SJed Brown                                         0,
14293964eb88SJed Brown                                         0,
14303964eb88SJed Brown                                         0,
14313964eb88SJed Brown                                         0,
14323964eb88SJed Brown                                 /*139*/ 0,
1433f9426fe0SMark Adams                                         0,
143494e2cb23SJakub Kruzik                                         0,
143594e2cb23SJakub Kruzik                                         0,
143694e2cb23SJakub Kruzik                                         0,
14374222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_MPIDense,
14384222ddf1SHong Zhang                                 /*145*/ 0,
14394222ddf1SHong Zhang                                         0,
14404222ddf1SHong Zhang                                         0
1441ba337c44SJed Brown };
14428965ea79SLois Curfman McInnes 
14437087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1444a23d5eceSKris Buschelman {
1445637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1446637a0070SStefano Zampini   PetscBool      iscuda;
1447dfbe8321SBarry Smith   PetscErrorCode ierr;
1448a23d5eceSKris Buschelman 
1449a23d5eceSKris Buschelman   PetscFunctionBegin;
145034ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
145134ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
1452637a0070SStefano Zampini   if (!a->A) {
1453f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
14543bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1455637a0070SStefano Zampini     ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
1456637a0070SStefano Zampini   }
1457637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1458637a0070SStefano Zampini   ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr);
1459637a0070SStefano Zampini   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
1460637a0070SStefano Zampini   mat->preallocated = PETSC_TRUE;
1461a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1462a23d5eceSKris Buschelman }
1463a23d5eceSKris Buschelman 
146465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1465cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
14668baccfbdSHong Zhang {
14678ea901baSHong Zhang   Mat            mat_elemental;
14688ea901baSHong Zhang   PetscErrorCode ierr;
146932d7a744SHong Zhang   PetscScalar    *v;
147032d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
14718ea901baSHong Zhang 
14728baccfbdSHong Zhang   PetscFunctionBegin;
1473378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1474378336b6SHong Zhang     mat_elemental = *newmat;
1475378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1476378336b6SHong Zhang   } else {
1477378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1478378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1479378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1480378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
148132d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1482378336b6SHong Zhang   }
1483378336b6SHong Zhang 
148432d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
148532d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
148632d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
14878ea901baSHong Zhang 
1488637a0070SStefano Zampini   /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
148932d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
149032d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
14918ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14928ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
149332d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
149432d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
14958ea901baSHong Zhang 
1496511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
149728be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
14988ea901baSHong Zhang   } else {
14998ea901baSHong Zhang     *newmat = mat_elemental;
15008ea901baSHong Zhang   }
15018baccfbdSHong Zhang   PetscFunctionReturn(0);
15028baccfbdSHong Zhang }
150365b80a83SHong Zhang #endif
15048baccfbdSHong Zhang 
1505af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
150686aefd0dSHong Zhang {
150786aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
150886aefd0dSHong Zhang   PetscErrorCode ierr;
150986aefd0dSHong Zhang 
151086aefd0dSHong Zhang   PetscFunctionBegin;
151186aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
151286aefd0dSHong Zhang   PetscFunctionReturn(0);
151386aefd0dSHong Zhang }
151486aefd0dSHong Zhang 
1515af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
151686aefd0dSHong Zhang {
151786aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
151886aefd0dSHong Zhang   PetscErrorCode ierr;
151986aefd0dSHong Zhang 
152086aefd0dSHong Zhang   PetscFunctionBegin;
152186aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
152286aefd0dSHong Zhang   PetscFunctionReturn(0);
152386aefd0dSHong Zhang }
152486aefd0dSHong Zhang 
152594e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
152694e2cb23SJakub Kruzik {
152794e2cb23SJakub Kruzik   PetscErrorCode ierr;
152894e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
152994e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
153094e2cb23SJakub Kruzik 
153194e2cb23SJakub Kruzik   PetscFunctionBegin;
153294e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
153394e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
153494e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
153594e2cb23SJakub Kruzik     PetscInt sum;
153694e2cb23SJakub Kruzik 
153794e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
153894e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
153994e2cb23SJakub Kruzik     }
154094e2cb23SJakub Kruzik     /* Check sum(n) = N */
154194e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
154294e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
154394e2cb23SJakub Kruzik 
154494e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
154594e2cb23SJakub Kruzik   }
154694e2cb23SJakub Kruzik 
154794e2cb23SJakub Kruzik   /* numeric phase */
154894e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
154994e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
155094e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
155194e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
155294e2cb23SJakub Kruzik   PetscFunctionReturn(0);
155394e2cb23SJakub Kruzik }
155494e2cb23SJakub Kruzik 
1555637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1556637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1557637a0070SStefano Zampini {
1558637a0070SStefano Zampini   Mat            B;
1559637a0070SStefano Zampini   Mat_MPIDense   *m;
1560637a0070SStefano Zampini   PetscErrorCode ierr;
1561637a0070SStefano Zampini 
1562637a0070SStefano Zampini   PetscFunctionBegin;
1563637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1564637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1565637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1566637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1567637a0070SStefano Zampini   }
1568637a0070SStefano Zampini 
1569637a0070SStefano Zampini   B    = *newmat;
1570637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr);
1571637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1572637a0070SStefano Zampini   ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr);
1573637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr);
1574637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr);
1575637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr);
1576637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr);
1577637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr);
1578637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr);
1579637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr);
1580637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr);
1581637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr);
1582637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr);
1583637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr);
1584637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr);
1585d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr);
1586637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1587637a0070SStefano Zampini   if (m->A) {
1588637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1589637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1590637a0070SStefano Zampini   }
1591637a0070SStefano Zampini   B->ops->bindtocpu = NULL;
1592637a0070SStefano Zampini   B->offloadmask    = PETSC_OFFLOAD_CPU;
1593637a0070SStefano Zampini   PetscFunctionReturn(0);
1594637a0070SStefano Zampini }
1595637a0070SStefano Zampini 
1596637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1597637a0070SStefano Zampini {
1598637a0070SStefano Zampini   Mat            B;
1599637a0070SStefano Zampini   Mat_MPIDense   *m;
1600637a0070SStefano Zampini   PetscErrorCode ierr;
1601637a0070SStefano Zampini 
1602637a0070SStefano Zampini   PetscFunctionBegin;
1603637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1604637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1605637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1606637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1607637a0070SStefano Zampini   }
1608637a0070SStefano Zampini 
1609637a0070SStefano Zampini   B    = *newmat;
1610637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1611637a0070SStefano Zampini   ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr);
1612637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr);
1613637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",            MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr);
1614637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
1615637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1616637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",                        MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr);
1617637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",                    MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1618637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",                   MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1619637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",                    MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr);
1620637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",                MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1621637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",               MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1622637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",                      MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1623637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",                      MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr);
1624d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",                    MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1625637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1626637a0070SStefano Zampini   if (m->A) {
1627637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1628637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1629637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_BOTH;
1630637a0070SStefano Zampini   } else {
1631637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_UNALLOCATED;
1632637a0070SStefano Zampini   }
1633637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr);
1634637a0070SStefano Zampini 
1635637a0070SStefano Zampini   B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA;
1636637a0070SStefano Zampini   PetscFunctionReturn(0);
1637637a0070SStefano Zampini }
1638637a0070SStefano Zampini #endif
1639637a0070SStefano Zampini 
16406947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
16416947451fSStefano Zampini {
16426947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16436947451fSStefano Zampini   PetscErrorCode ierr;
16446947451fSStefano Zampini   PetscInt       lda;
16456947451fSStefano Zampini 
16466947451fSStefano Zampini   PetscFunctionBegin;
16476947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
16486947451fSStefano Zampini   if (!a->cvec) {
16496947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
16506947451fSStefano Zampini   }
16516947451fSStefano Zampini   a->vecinuse = col + 1;
16526947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
16536947451fSStefano Zampini   ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
16546947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
16556947451fSStefano Zampini   *v   = a->cvec;
16566947451fSStefano Zampini   PetscFunctionReturn(0);
16576947451fSStefano Zampini }
16586947451fSStefano Zampini 
16596947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
16606947451fSStefano Zampini {
16616947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16626947451fSStefano Zampini   PetscErrorCode ierr;
16636947451fSStefano Zampini 
16646947451fSStefano Zampini   PetscFunctionBegin;
16656947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
16666947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
16676947451fSStefano Zampini   a->vecinuse = 0;
16686947451fSStefano Zampini   ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
16696947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
16706947451fSStefano Zampini   *v   = NULL;
16716947451fSStefano Zampini   PetscFunctionReturn(0);
16726947451fSStefano Zampini }
16736947451fSStefano Zampini 
16746947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
16756947451fSStefano Zampini {
16766947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16776947451fSStefano Zampini   PetscErrorCode ierr;
16786947451fSStefano Zampini   PetscInt       lda;
16796947451fSStefano Zampini 
16806947451fSStefano Zampini   PetscFunctionBegin;
16816947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
16826947451fSStefano Zampini   if (!a->cvec) {
16836947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
16846947451fSStefano Zampini   }
16856947451fSStefano Zampini   a->vecinuse = col + 1;
16866947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
16876947451fSStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
16886947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
16896947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
16906947451fSStefano Zampini   *v   = a->cvec;
16916947451fSStefano Zampini   PetscFunctionReturn(0);
16926947451fSStefano Zampini }
16936947451fSStefano Zampini 
16946947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
16956947451fSStefano Zampini {
16966947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16976947451fSStefano Zampini   PetscErrorCode ierr;
16986947451fSStefano Zampini 
16996947451fSStefano Zampini   PetscFunctionBegin;
17006947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
17016947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
17026947451fSStefano Zampini   a->vecinuse = 0;
17036947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
17046947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
17056947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
17066947451fSStefano Zampini   *v   = NULL;
17076947451fSStefano Zampini   PetscFunctionReturn(0);
17086947451fSStefano Zampini }
17096947451fSStefano Zampini 
17106947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
17116947451fSStefano Zampini {
17126947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17136947451fSStefano Zampini   PetscErrorCode ierr;
17146947451fSStefano Zampini   PetscInt       lda;
17156947451fSStefano Zampini 
17166947451fSStefano Zampini   PetscFunctionBegin;
17176947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
17186947451fSStefano Zampini   if (!a->cvec) {
17196947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
17206947451fSStefano Zampini   }
17216947451fSStefano Zampini   a->vecinuse = col + 1;
17226947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
17236947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17246947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
17256947451fSStefano Zampini   *v   = a->cvec;
17266947451fSStefano Zampini   PetscFunctionReturn(0);
17276947451fSStefano Zampini }
17286947451fSStefano Zampini 
17296947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
17306947451fSStefano Zampini {
17316947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17326947451fSStefano Zampini   PetscErrorCode ierr;
17336947451fSStefano Zampini 
17346947451fSStefano Zampini   PetscFunctionBegin;
17356947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
17366947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
17376947451fSStefano Zampini   a->vecinuse = 0;
17386947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17396947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
17406947451fSStefano Zampini   *v   = NULL;
17416947451fSStefano Zampini   PetscFunctionReturn(0);
17426947451fSStefano Zampini }
17436947451fSStefano Zampini 
17448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1745273d9f13SBarry Smith {
1746273d9f13SBarry Smith   Mat_MPIDense   *a;
1747dfbe8321SBarry Smith   PetscErrorCode ierr;
1748273d9f13SBarry Smith 
1749273d9f13SBarry Smith   PetscFunctionBegin;
1750b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1751b0a32e0cSBarry Smith   mat->data = (void*)a;
1752273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1753273d9f13SBarry Smith 
1754273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1755ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1756ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1757273d9f13SBarry Smith 
1758273d9f13SBarry Smith   /* build cache for off array entries formed */
1759273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
17602205254eSKarl Rupp 
1761ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1762273d9f13SBarry Smith 
1763273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1764273d9f13SBarry Smith   a->lvec        = 0;
1765273d9f13SBarry Smith   a->Mvctx       = 0;
1766273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1767273d9f13SBarry Smith 
176849a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1769*ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr);
1770bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
17718572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
17728572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
17738572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
17746947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr);
17756947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr);
1776d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1777d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
1778d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr);
17796947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
17806947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
17816947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
17826947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
17836947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
17846947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
17858baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17868baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
17878baccfbdSHong Zhang #endif
1788637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1789637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr);
1790637a0070SStefano Zampini #endif
1791bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
17924222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
17934222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1794bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1795bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
179652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr);
179752c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr);
17988949adfdSHong Zhang 
17998949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
18008949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1801af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1802af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
180338aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1804273d9f13SBarry Smith   PetscFunctionReturn(0);
1805273d9f13SBarry Smith }
1806273d9f13SBarry Smith 
1807209238afSKris Buschelman /*MC
1808637a0070SStefano Zampini    MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs.
1809637a0070SStefano Zampini 
1810637a0070SStefano Zampini    Options Database Keys:
1811637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions()
1812637a0070SStefano Zampini 
1813637a0070SStefano Zampini   Level: beginner
1814637a0070SStefano Zampini 
1815637a0070SStefano Zampini .seealso:
1816637a0070SStefano Zampini 
1817637a0070SStefano Zampini M*/
1818637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1819637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B)
1820637a0070SStefano Zampini {
1821637a0070SStefano Zampini   PetscErrorCode ierr;
1822637a0070SStefano Zampini 
1823637a0070SStefano Zampini   PetscFunctionBegin;
1824637a0070SStefano Zampini   ierr = MatCreate_MPIDense(B);CHKERRQ(ierr);
1825637a0070SStefano Zampini   ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr);
1826637a0070SStefano Zampini   PetscFunctionReturn(0);
1827637a0070SStefano Zampini }
1828637a0070SStefano Zampini #endif
1829637a0070SStefano Zampini 
1830637a0070SStefano Zampini /*MC
1831002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1832209238afSKris Buschelman 
1833209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1834209238afSKris Buschelman    and MATMPIDENSE otherwise.
1835209238afSKris Buschelman 
1836209238afSKris Buschelman    Options Database Keys:
1837209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1838209238afSKris Buschelman 
1839209238afSKris Buschelman   Level: beginner
1840209238afSKris Buschelman 
184101b82886SBarry Smith 
18426947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA
18436947451fSStefano Zampini M*/
18446947451fSStefano Zampini 
18456947451fSStefano Zampini /*MC
18466947451fSStefano Zampini    MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs.
18476947451fSStefano Zampini 
18486947451fSStefano Zampini    This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator,
18496947451fSStefano Zampini    and MATMPIDENSECUDA otherwise.
18506947451fSStefano Zampini 
18516947451fSStefano Zampini    Options Database Keys:
18526947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions()
18536947451fSStefano Zampini 
18546947451fSStefano Zampini   Level: beginner
18556947451fSStefano Zampini 
18566947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE
1857209238afSKris Buschelman M*/
1858209238afSKris Buschelman 
1859273d9f13SBarry Smith /*@C
1860273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1861273d9f13SBarry Smith 
1862273d9f13SBarry Smith    Not collective
1863273d9f13SBarry Smith 
1864273d9f13SBarry Smith    Input Parameters:
18651c4f3114SJed Brown .  B - the matrix
18660298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1867273d9f13SBarry Smith    to control all matrix memory allocation.
1868273d9f13SBarry Smith 
1869273d9f13SBarry Smith    Notes:
1870273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1871273d9f13SBarry Smith    storage by columns.
1872273d9f13SBarry Smith 
1873273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1874273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
18750298fd71SBarry Smith    set data=NULL.
1876273d9f13SBarry Smith 
1877273d9f13SBarry Smith    Level: intermediate
1878273d9f13SBarry Smith 
1879273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1880273d9f13SBarry Smith @*/
18811c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1882273d9f13SBarry Smith {
18834ac538c5SBarry Smith   PetscErrorCode ierr;
1884273d9f13SBarry Smith 
1885273d9f13SBarry Smith   PetscFunctionBegin;
1886d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
18871c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1888273d9f13SBarry Smith   PetscFunctionReturn(0);
1889273d9f13SBarry Smith }
1890273d9f13SBarry Smith 
1891d3042a70SBarry Smith /*@
1892637a0070SStefano Zampini    MatDensePlaceArray - Allows one to replace the array in a dense matrix with an
1893d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1894d3042a70SBarry Smith    into a matrix
1895d3042a70SBarry Smith 
1896d3042a70SBarry Smith    Not Collective
1897d3042a70SBarry Smith 
1898d3042a70SBarry Smith    Input Parameters:
1899d3042a70SBarry Smith +  mat - the matrix
1900d3042a70SBarry Smith -  array - the array in column major order
1901d3042a70SBarry Smith 
1902d3042a70SBarry Smith    Notes:
1903d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1904d3042a70SBarry Smith    freed when the matrix is destroyed.
1905d3042a70SBarry Smith 
1906d3042a70SBarry Smith    Level: developer
1907d3042a70SBarry Smith 
1908d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1909d3042a70SBarry Smith 
1910d3042a70SBarry Smith @*/
1911637a0070SStefano Zampini PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar *array)
1912d3042a70SBarry Smith {
1913d3042a70SBarry Smith   PetscErrorCode ierr;
1914637a0070SStefano Zampini 
1915d3042a70SBarry Smith   PetscFunctionBegin;
1916d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1917d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1918d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1919637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1920637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
1921637a0070SStefano Zampini #endif
1922d3042a70SBarry Smith   PetscFunctionReturn(0);
1923d3042a70SBarry Smith }
1924d3042a70SBarry Smith 
1925d3042a70SBarry Smith /*@
1926d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1927d3042a70SBarry Smith 
1928d3042a70SBarry Smith    Not Collective
1929d3042a70SBarry Smith 
1930d3042a70SBarry Smith    Input Parameters:
1931d3042a70SBarry Smith .  mat - the matrix
1932d3042a70SBarry Smith 
1933d3042a70SBarry Smith    Notes:
1934d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1935d3042a70SBarry Smith 
1936d3042a70SBarry Smith    Level: developer
1937d3042a70SBarry Smith 
1938d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1939d3042a70SBarry Smith 
1940d3042a70SBarry Smith @*/
1941d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1942d3042a70SBarry Smith {
1943d3042a70SBarry Smith   PetscErrorCode ierr;
1944637a0070SStefano Zampini 
1945d3042a70SBarry Smith   PetscFunctionBegin;
1946d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1947d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1948d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1949d3042a70SBarry Smith   PetscFunctionReturn(0);
1950d3042a70SBarry Smith }
1951d3042a70SBarry Smith 
1952d5ea218eSStefano Zampini /*@
1953d5ea218eSStefano Zampini    MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an
1954d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
1955d5ea218eSStefano Zampini    into a matrix
1956d5ea218eSStefano Zampini 
1957d5ea218eSStefano Zampini    Not Collective
1958d5ea218eSStefano Zampini 
1959d5ea218eSStefano Zampini    Input Parameters:
1960d5ea218eSStefano Zampini +  mat - the matrix
1961d5ea218eSStefano Zampini -  array - the array in column major order
1962d5ea218eSStefano Zampini 
1963d5ea218eSStefano Zampini    Notes:
1964d5ea218eSStefano Zampini    The memory passed in MUST be obtained with PetscMalloc() and CANNOT be
1965d5ea218eSStefano Zampini    freed by the user. It will be freed when the matrix is destroyed.
1966d5ea218eSStefano Zampini 
1967d5ea218eSStefano Zampini    Level: developer
1968d5ea218eSStefano Zampini 
1969d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray()
1970d5ea218eSStefano Zampini @*/
1971d5ea218eSStefano Zampini PetscErrorCode  MatDenseReplaceArray(Mat mat,const PetscScalar *array)
1972d5ea218eSStefano Zampini {
1973d5ea218eSStefano Zampini   PetscErrorCode ierr;
1974d5ea218eSStefano Zampini 
1975d5ea218eSStefano Zampini   PetscFunctionBegin;
1976d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1977d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1978d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1979d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1980d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
1981d5ea218eSStefano Zampini #endif
1982d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1983d5ea218eSStefano Zampini }
1984d5ea218eSStefano Zampini 
1985637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
19868965ea79SLois Curfman McInnes /*@C
1987637a0070SStefano Zampini    MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an
1988637a0070SStefano Zampini    array provided by the user. This is useful to avoid copying an array
1989637a0070SStefano Zampini    into a matrix
1990637a0070SStefano Zampini 
1991637a0070SStefano Zampini    Not Collective
1992637a0070SStefano Zampini 
1993637a0070SStefano Zampini    Input Parameters:
1994637a0070SStefano Zampini +  mat - the matrix
1995637a0070SStefano Zampini -  array - the array in column major order
1996637a0070SStefano Zampini 
1997637a0070SStefano Zampini    Notes:
1998637a0070SStefano Zampini    You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be
1999637a0070SStefano Zampini    freed when the matrix is destroyed. The array must have been allocated with cudaMalloc().
2000637a0070SStefano Zampini 
2001637a0070SStefano Zampini    Level: developer
2002637a0070SStefano Zampini 
2003637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray()
2004637a0070SStefano Zampini @*/
2005637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array)
2006637a0070SStefano Zampini {
2007637a0070SStefano Zampini   PetscErrorCode ierr;
2008637a0070SStefano Zampini 
2009637a0070SStefano Zampini   PetscFunctionBegin;
2010d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2011637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2012637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2013637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2014637a0070SStefano Zampini   PetscFunctionReturn(0);
2015637a0070SStefano Zampini }
2016637a0070SStefano Zampini 
2017637a0070SStefano Zampini /*@C
2018637a0070SStefano Zampini    MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray()
2019637a0070SStefano Zampini 
2020637a0070SStefano Zampini    Not Collective
2021637a0070SStefano Zampini 
2022637a0070SStefano Zampini    Input Parameters:
2023637a0070SStefano Zampini .  mat - the matrix
2024637a0070SStefano Zampini 
2025637a0070SStefano Zampini    Notes:
2026637a0070SStefano Zampini    You can only call this after a call to MatDenseCUDAPlaceArray()
2027637a0070SStefano Zampini 
2028637a0070SStefano Zampini    Level: developer
2029637a0070SStefano Zampini 
2030637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray()
2031637a0070SStefano Zampini 
2032637a0070SStefano Zampini @*/
2033637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAResetArray(Mat mat)
2034637a0070SStefano Zampini {
2035637a0070SStefano Zampini   PetscErrorCode ierr;
2036637a0070SStefano Zampini 
2037637a0070SStefano Zampini   PetscFunctionBegin;
2038d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2039637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr);
2040637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2041637a0070SStefano Zampini   PetscFunctionReturn(0);
2042637a0070SStefano Zampini }
2043637a0070SStefano Zampini 
2044637a0070SStefano Zampini /*@C
2045d5ea218eSStefano Zampini    MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an
2046d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
2047d5ea218eSStefano Zampini    into a matrix
2048d5ea218eSStefano Zampini 
2049d5ea218eSStefano Zampini    Not Collective
2050d5ea218eSStefano Zampini 
2051d5ea218eSStefano Zampini    Input Parameters:
2052d5ea218eSStefano Zampini +  mat - the matrix
2053d5ea218eSStefano Zampini -  array - the array in column major order
2054d5ea218eSStefano Zampini 
2055d5ea218eSStefano Zampini    Notes:
2056d5ea218eSStefano Zampini    This permanently replaces the GPU array and frees the memory associated with the old GPU array.
2057d5ea218eSStefano Zampini    The memory passed in CANNOT be freed by the user. It will be freed
2058d5ea218eSStefano Zampini    when the matrix is destroyed. The array should respect the matrix leading dimension.
2059d5ea218eSStefano Zampini 
2060d5ea218eSStefano Zampini    Level: developer
2061d5ea218eSStefano Zampini 
2062d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray()
2063d5ea218eSStefano Zampini @*/
2064d5ea218eSStefano Zampini PetscErrorCode  MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array)
2065d5ea218eSStefano Zampini {
2066d5ea218eSStefano Zampini   PetscErrorCode ierr;
2067d5ea218eSStefano Zampini 
2068d5ea218eSStefano Zampini   PetscFunctionBegin;
2069d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2070d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2071d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2072d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2073d5ea218eSStefano Zampini   PetscFunctionReturn(0);
2074d5ea218eSStefano Zampini }
2075d5ea218eSStefano Zampini 
2076d5ea218eSStefano Zampini /*@C
2077637a0070SStefano Zampini    MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix.
2078637a0070SStefano Zampini 
2079637a0070SStefano Zampini    Not Collective
2080637a0070SStefano Zampini 
2081637a0070SStefano Zampini    Input Parameters:
2082637a0070SStefano Zampini .  A - the matrix
2083637a0070SStefano Zampini 
2084637a0070SStefano Zampini    Output Parameters
2085637a0070SStefano Zampini .  array - the GPU array in column major order
2086637a0070SStefano Zampini 
2087637a0070SStefano Zampini    Notes:
2088637a0070SStefano Zampini    The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed.
2089637a0070SStefano Zampini 
2090637a0070SStefano Zampini    Level: developer
2091637a0070SStefano Zampini 
2092637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead()
2093637a0070SStefano Zampini @*/
2094637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a)
2095637a0070SStefano Zampini {
2096637a0070SStefano Zampini   PetscErrorCode ierr;
2097637a0070SStefano Zampini 
2098637a0070SStefano Zampini   PetscFunctionBegin;
2099d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2100637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2101637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2102637a0070SStefano Zampini   PetscFunctionReturn(0);
2103637a0070SStefano Zampini }
2104637a0070SStefano Zampini 
2105637a0070SStefano Zampini /*@C
2106637a0070SStefano Zampini    MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite().
2107637a0070SStefano Zampini 
2108637a0070SStefano Zampini    Not Collective
2109637a0070SStefano Zampini 
2110637a0070SStefano Zampini    Input Parameters:
2111637a0070SStefano Zampini +  A - the matrix
2112637a0070SStefano Zampini -  array - the GPU array in column major order
2113637a0070SStefano Zampini 
2114637a0070SStefano Zampini    Notes:
2115637a0070SStefano Zampini 
2116637a0070SStefano Zampini    Level: developer
2117637a0070SStefano Zampini 
2118637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2119637a0070SStefano Zampini @*/
2120637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a)
2121637a0070SStefano Zampini {
2122637a0070SStefano Zampini   PetscErrorCode ierr;
2123637a0070SStefano Zampini 
2124637a0070SStefano Zampini   PetscFunctionBegin;
2125d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2126637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2127637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2128637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2129637a0070SStefano Zampini   PetscFunctionReturn(0);
2130637a0070SStefano Zampini }
2131637a0070SStefano Zampini 
2132637a0070SStefano Zampini /*@C
2133637a0070SStefano Zampini    MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed.
2134637a0070SStefano Zampini 
2135637a0070SStefano Zampini    Not Collective
2136637a0070SStefano Zampini 
2137637a0070SStefano Zampini    Input Parameters:
2138637a0070SStefano Zampini .  A - the matrix
2139637a0070SStefano Zampini 
2140637a0070SStefano Zampini    Output Parameters
2141637a0070SStefano Zampini .  array - the GPU array in column major order
2142637a0070SStefano Zampini 
2143637a0070SStefano Zampini    Notes:
2144637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2145637a0070SStefano Zampini 
2146637a0070SStefano Zampini    Level: developer
2147637a0070SStefano Zampini 
2148637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2149637a0070SStefano Zampini @*/
2150637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a)
2151637a0070SStefano Zampini {
2152637a0070SStefano Zampini   PetscErrorCode ierr;
2153637a0070SStefano Zampini 
2154637a0070SStefano Zampini   PetscFunctionBegin;
2155d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2156637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2157637a0070SStefano Zampini   PetscFunctionReturn(0);
2158637a0070SStefano Zampini }
2159637a0070SStefano Zampini 
2160637a0070SStefano Zampini /*@C
2161637a0070SStefano Zampini    MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead().
2162637a0070SStefano Zampini 
2163637a0070SStefano Zampini    Not Collective
2164637a0070SStefano Zampini 
2165637a0070SStefano Zampini    Input Parameters:
2166637a0070SStefano Zampini +  A - the matrix
2167637a0070SStefano Zampini -  array - the GPU array in column major order
2168637a0070SStefano Zampini 
2169637a0070SStefano Zampini    Notes:
2170637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2171637a0070SStefano Zampini 
2172637a0070SStefano Zampini    Level: developer
2173637a0070SStefano Zampini 
2174637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead()
2175637a0070SStefano Zampini @*/
2176637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a)
2177637a0070SStefano Zampini {
2178637a0070SStefano Zampini   PetscErrorCode ierr;
2179637a0070SStefano Zampini 
2180637a0070SStefano Zampini   PetscFunctionBegin;
2181637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2182637a0070SStefano Zampini   PetscFunctionReturn(0);
2183637a0070SStefano Zampini }
2184637a0070SStefano Zampini 
2185637a0070SStefano Zampini /*@C
2186637a0070SStefano Zampini    MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed.
2187637a0070SStefano Zampini 
2188637a0070SStefano Zampini    Not Collective
2189637a0070SStefano Zampini 
2190637a0070SStefano Zampini    Input Parameters:
2191637a0070SStefano Zampini .  A - the matrix
2192637a0070SStefano Zampini 
2193637a0070SStefano Zampini    Output Parameters
2194637a0070SStefano Zampini .  array - the GPU array in column major order
2195637a0070SStefano Zampini 
2196637a0070SStefano Zampini    Notes:
2197637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead().
2198637a0070SStefano Zampini 
2199637a0070SStefano Zampini    Level: developer
2200637a0070SStefano Zampini 
2201637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2202637a0070SStefano Zampini @*/
2203637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a)
2204637a0070SStefano Zampini {
2205637a0070SStefano Zampini   PetscErrorCode ierr;
2206637a0070SStefano Zampini 
2207637a0070SStefano Zampini   PetscFunctionBegin;
2208d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2209637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2210637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2211637a0070SStefano Zampini   PetscFunctionReturn(0);
2212637a0070SStefano Zampini }
2213637a0070SStefano Zampini 
2214637a0070SStefano Zampini /*@C
2215637a0070SStefano Zampini    MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray().
2216637a0070SStefano Zampini 
2217637a0070SStefano Zampini    Not Collective
2218637a0070SStefano Zampini 
2219637a0070SStefano Zampini    Input Parameters:
2220637a0070SStefano Zampini +  A - the matrix
2221637a0070SStefano Zampini -  array - the GPU array in column major order
2222637a0070SStefano Zampini 
2223637a0070SStefano Zampini    Notes:
2224637a0070SStefano Zampini 
2225637a0070SStefano Zampini    Level: developer
2226637a0070SStefano Zampini 
2227637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2228637a0070SStefano Zampini @*/
2229637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a)
2230637a0070SStefano Zampini {
2231637a0070SStefano Zampini   PetscErrorCode ierr;
2232637a0070SStefano Zampini 
2233637a0070SStefano Zampini   PetscFunctionBegin;
2234d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2235637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2236637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2237637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2238637a0070SStefano Zampini   PetscFunctionReturn(0);
2239637a0070SStefano Zampini }
2240637a0070SStefano Zampini #endif
2241637a0070SStefano Zampini 
2242637a0070SStefano Zampini /*@C
2243637a0070SStefano Zampini    MatCreateDense - Creates a matrix in dense format.
22448965ea79SLois Curfman McInnes 
2245d083f849SBarry Smith    Collective
2246db81eaa0SLois Curfman McInnes 
22478965ea79SLois Curfman McInnes    Input Parameters:
2248db81eaa0SLois Curfman McInnes +  comm - MPI communicator
22498965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2250db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
22518965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2252db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
22536cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
2254dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
22558965ea79SLois Curfman McInnes 
22568965ea79SLois Curfman McInnes    Output Parameter:
2257477f1c0bSLois Curfman McInnes .  A - the matrix
22588965ea79SLois Curfman McInnes 
2259b259b22eSLois Curfman McInnes    Notes:
226039ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
226139ddd567SLois Curfman McInnes    storage by columns.
22628965ea79SLois Curfman McInnes 
226318f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
226418f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
22656cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
226618f449edSLois Curfman McInnes 
22678965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
22688965ea79SLois Curfman McInnes    (possibly both).
22698965ea79SLois Curfman McInnes 
2270027ccd11SLois Curfman McInnes    Level: intermediate
2271027ccd11SLois Curfman McInnes 
227239ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
22738965ea79SLois Curfman McInnes @*/
227469b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
22758965ea79SLois Curfman McInnes {
22766849ba73SBarry Smith   PetscErrorCode ierr;
227713f74950SBarry Smith   PetscMPIInt    size;
22788965ea79SLois Curfman McInnes 
22793a40ed3dSBarry Smith   PetscFunctionBegin;
2280f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
22818491ab44SLisandro Dalcin   PetscValidLogicalCollectiveBool(*A,!!data,6);
2282f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2283273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2284273d9f13SBarry Smith   if (size > 1) {
2285273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
2286273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
22876cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
22886cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
22896cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
22906cfe35ddSJose E. Roman     }
2291273d9f13SBarry Smith   } else {
2292273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2293273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
22948c469469SLois Curfman McInnes   }
22953a40ed3dSBarry Smith   PetscFunctionReturn(0);
22968965ea79SLois Curfman McInnes }
22978965ea79SLois Curfman McInnes 
2298637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2299637a0070SStefano Zampini /*@C
2300637a0070SStefano Zampini    MatCreateDenseCUDA - Creates a matrix in dense format using CUDA.
2301637a0070SStefano Zampini 
2302637a0070SStefano Zampini    Collective
2303637a0070SStefano Zampini 
2304637a0070SStefano Zampini    Input Parameters:
2305637a0070SStefano Zampini +  comm - MPI communicator
2306637a0070SStefano Zampini .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2307637a0070SStefano Zampini .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2308637a0070SStefano Zampini .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2309637a0070SStefano Zampini .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
2310637a0070SStefano Zampini -  data - optional location of GPU matrix data.  Set data=NULL for PETSc
2311637a0070SStefano Zampini    to control matrix memory allocation.
2312637a0070SStefano Zampini 
2313637a0070SStefano Zampini    Output Parameter:
2314637a0070SStefano Zampini .  A - the matrix
2315637a0070SStefano Zampini 
2316637a0070SStefano Zampini    Notes:
2317637a0070SStefano Zampini 
2318637a0070SStefano Zampini    Level: intermediate
2319637a0070SStefano Zampini 
2320637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense()
2321637a0070SStefano Zampini @*/
2322637a0070SStefano Zampini PetscErrorCode  MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
2323637a0070SStefano Zampini {
2324637a0070SStefano Zampini   PetscErrorCode ierr;
2325637a0070SStefano Zampini   PetscMPIInt    size;
2326637a0070SStefano Zampini 
2327637a0070SStefano Zampini   PetscFunctionBegin;
2328637a0070SStefano Zampini   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2329637a0070SStefano Zampini   PetscValidLogicalCollectiveBool(*A,!!data,6);
2330637a0070SStefano Zampini   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2331637a0070SStefano Zampini   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2332637a0070SStefano Zampini   if (size > 1) {
2333637a0070SStefano Zampini     ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr);
2334637a0070SStefano Zampini     ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2335637a0070SStefano Zampini     if (data) {  /* user provided data array, so no need to assemble */
2336637a0070SStefano Zampini       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
2337637a0070SStefano Zampini       (*A)->assembled = PETSC_TRUE;
2338637a0070SStefano Zampini     }
2339637a0070SStefano Zampini   } else {
2340637a0070SStefano Zampini     ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr);
2341637a0070SStefano Zampini     ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2342637a0070SStefano Zampini   }
2343637a0070SStefano Zampini   PetscFunctionReturn(0);
2344637a0070SStefano Zampini }
2345637a0070SStefano Zampini #endif
2346637a0070SStefano Zampini 
23476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
23488965ea79SLois Curfman McInnes {
23498965ea79SLois Curfman McInnes   Mat            mat;
23503501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
2351dfbe8321SBarry Smith   PetscErrorCode ierr;
23528965ea79SLois Curfman McInnes 
23533a40ed3dSBarry Smith   PetscFunctionBegin;
23548965ea79SLois Curfman McInnes   *newmat = 0;
2355ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
2356d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
23577adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2358834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
23595aa7edbeSHong Zhang 
2360d5f3da31SBarry Smith   mat->factortype   = A->factortype;
2361c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
2362273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
23638965ea79SLois Curfman McInnes 
23648965ea79SLois Curfman McInnes   a->size         = oldmat->size;
23658965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
2366e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
23673782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
2368e04c1aa4SHong Zhang 
23691e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
23701e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
23718965ea79SLois Curfman McInnes 
23725609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
23733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2374637a0070SStefano Zampini   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
237501b82886SBarry Smith 
23768965ea79SLois Curfman McInnes   *newmat = mat;
23773a40ed3dSBarry Smith   PetscFunctionReturn(0);
23788965ea79SLois Curfman McInnes }
23798965ea79SLois Curfman McInnes 
2380eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer)
2381eb91f321SVaclav Hapla {
2382eb91f321SVaclav Hapla   PetscErrorCode ierr;
238387d5ce66SSatish Balay   PetscBool      isbinary;
238487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
238587d5ce66SSatish Balay   PetscBool      ishdf5;
238687d5ce66SSatish Balay #endif
2387eb91f321SVaclav Hapla 
2388eb91f321SVaclav Hapla   PetscFunctionBegin;
2389eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
2390eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
2391eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
2392eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2393eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
239487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
2395eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
239687d5ce66SSatish Balay #endif
2397eb91f321SVaclav Hapla   if (isbinary) {
23988491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
2399eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
240087d5ce66SSatish Balay   } else if (ishdf5) {
2401eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
2402eb91f321SVaclav Hapla #endif
240387d5ce66SSatish Balay   } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
2404eb91f321SVaclav Hapla   PetscFunctionReturn(0);
2405eb91f321SVaclav Hapla }
2406eb91f321SVaclav Hapla 
2407ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
24086e4ee0c6SHong Zhang {
24096e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
24106e4ee0c6SHong Zhang   Mat            a,b;
2411ace3abfcSBarry Smith   PetscBool      flg;
24126e4ee0c6SHong Zhang   PetscErrorCode ierr;
241390ace30eSBarry Smith 
24146e4ee0c6SHong Zhang   PetscFunctionBegin;
24156e4ee0c6SHong Zhang   a    = matA->A;
24166e4ee0c6SHong Zhang   b    = matB->A;
24176e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
2418b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
24196e4ee0c6SHong Zhang   PetscFunctionReturn(0);
24206e4ee0c6SHong Zhang }
242190ace30eSBarry Smith 
2422baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
2423baa3c1c6SHong Zhang {
2424baa3c1c6SHong Zhang   PetscErrorCode        ierr;
2425baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2426baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
2427baa3c1c6SHong Zhang 
2428baa3c1c6SHong Zhang   PetscFunctionBegin;
2429637a0070SStefano Zampini   ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr);
2430637a0070SStefano Zampini   ierr = MatDestroy(&atb->atb);CHKERRQ(ierr);
2431637a0070SStefano Zampini   ierr = (*atb->destroy)(A);CHKERRQ(ierr);
2432baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
2433baa3c1c6SHong Zhang   PetscFunctionReturn(0);
2434baa3c1c6SHong Zhang }
2435baa3c1c6SHong Zhang 
2436cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
2437cc48ffa7SToby Isaac {
2438cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2439cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2440cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
2441cc48ffa7SToby Isaac 
2442cc48ffa7SToby Isaac   PetscFunctionBegin;
2443cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
2444faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
2445cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
2446cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
2447cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2448cc48ffa7SToby Isaac }
2449cc48ffa7SToby Isaac 
2450cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2451cb20be35SHong Zhang {
2452baa3c1c6SHong Zhang   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2453baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
2454cb20be35SHong Zhang   PetscErrorCode        ierr;
2455cb20be35SHong Zhang   MPI_Comm              comm;
2456637a0070SStefano Zampini   PetscMPIInt           size,*recvcounts=atb->recvcounts;
2457637a0070SStefano Zampini   PetscScalar           *carray,*sendbuf=atb->sendbuf;
2458637a0070SStefano Zampini   const PetscScalar     *atbarray;
2459d5017740SHong Zhang   PetscInt              i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
2460e68c0b26SHong Zhang   const PetscInt        *ranges;
2461cb20be35SHong Zhang 
2462cb20be35SHong Zhang   PetscFunctionBegin;
2463cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2464cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2465e68c0b26SHong Zhang 
2466c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
2467637a0070SStefano Zampini   ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr);
2468cb20be35SHong Zhang 
2469cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
2470c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
2471cb20be35SHong Zhang 
2472660d5466SHong Zhang   /* arrange atbarray into sendbuf */
2473637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2474637a0070SStefano Zampini   for (proc=0, k=0; proc<size; proc++) {
2475baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
2476c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
2477cb20be35SHong Zhang     }
2478cb20be35SHong Zhang   }
2479637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2480637a0070SStefano Zampini 
2481c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
2482660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
24833462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
2484660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
2485cb20be35SHong Zhang   PetscFunctionReturn(0);
2486cb20be35SHong Zhang }
2487cb20be35SHong Zhang 
24884222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2489cb20be35SHong Zhang {
2490cb20be35SHong Zhang   PetscErrorCode        ierr;
2491cb20be35SHong Zhang   MPI_Comm              comm;
2492baa3c1c6SHong Zhang   PetscMPIInt           size;
2493660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
2494baa3c1c6SHong Zhang   Mat_MPIDense          *c;
2495baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
2496cb20be35SHong Zhang 
2497cb20be35SHong Zhang   PetscFunctionBegin;
2498baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2499cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
2500cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2501cb20be35SHong Zhang   }
2502cb20be35SHong Zhang 
25034222ddf1SHong Zhang   /* create matrix product C */
25044222ddf1SHong Zhang   ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
25054222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
250618992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
25074222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
25084222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2509baa3c1c6SHong Zhang 
25104222ddf1SHong Zhang   /* create data structure for reuse C */
2511baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2512baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
25134222ddf1SHong Zhang   cM   = C->rmap->N;
2514637a0070SStefano Zampini   ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr);
2515baa3c1c6SHong Zhang 
25164222ddf1SHong Zhang   c               = (Mat_MPIDense*)C->data;
2517baa3c1c6SHong Zhang   c->atbdense     = atb;
25184222ddf1SHong Zhang   atb->destroy    = C->ops->destroy;
25194222ddf1SHong Zhang   C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2520cb20be35SHong Zhang   PetscFunctionReturn(0);
2521cb20be35SHong Zhang }
2522cb20be35SHong Zhang 
25234222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
2524cb20be35SHong Zhang {
2525cb20be35SHong Zhang   PetscErrorCode        ierr;
2526cc48ffa7SToby Isaac   MPI_Comm              comm;
2527cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2528cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2529cc48ffa7SToby Isaac   Mat_MPIDense          *c;
2530cc48ffa7SToby Isaac   PetscMPIInt           tag;
25314222ddf1SHong Zhang   PetscInt              alg;
2532cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
25334222ddf1SHong Zhang   Mat_Product           *product = C->product;
25344222ddf1SHong Zhang   PetscBool             flg;
2535cc48ffa7SToby Isaac 
2536cc48ffa7SToby Isaac   PetscFunctionBegin;
25374222ddf1SHong Zhang   /* check local size of A and B */
2538637a0070SStefano Zampini   if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n);
2539cc48ffa7SToby Isaac 
25404222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr);
2541637a0070SStefano Zampini   alg  = flg ? 0 : 1;
2542cc48ffa7SToby Isaac 
25434222ddf1SHong Zhang   /* setup matrix product C */
25444222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
25454222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
254618992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
25474222ddf1SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr);
25484222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
25494222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
25504222ddf1SHong Zhang 
25514222ddf1SHong Zhang   /* create data structure for reuse C */
25524222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
2553cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2554cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2555cc48ffa7SToby Isaac   abt->tag = tag;
2556faa55883SToby Isaac   abt->alg = alg;
2557faa55883SToby Isaac   switch (alg) {
25584222ddf1SHong Zhang   case 1: /* alg: "cyclic" */
2559cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2560cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2561cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2562faa55883SToby Isaac     break;
25634222ddf1SHong Zhang   default: /* alg: "allgatherv" */
2564faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2565faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2566faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2567faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2568faa55883SToby Isaac     break;
2569faa55883SToby Isaac   }
2570cc48ffa7SToby Isaac 
25714222ddf1SHong Zhang   c                               = (Mat_MPIDense*)C->data;
2572cc48ffa7SToby Isaac   c->abtdense                     = abt;
25734222ddf1SHong Zhang   abt->destroy                    = C->ops->destroy;
25744222ddf1SHong Zhang   C->ops->destroy                 = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
25754222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense;
2576cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2577cc48ffa7SToby Isaac }
2578cc48ffa7SToby Isaac 
2579faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2580cc48ffa7SToby Isaac {
2581cc48ffa7SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2582cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2583cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2584cc48ffa7SToby Isaac   MPI_Comm              comm;
2585cc48ffa7SToby Isaac   PetscMPIInt           rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2586637a0070SStefano Zampini   PetscScalar           *sendbuf, *recvbuf=0, *cv;
2587cc48ffa7SToby Isaac   PetscInt              i,cK=A->cmap->N,k,j,bn;
2588cc48ffa7SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2589637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2590637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, blda, clda;
2591cc48ffa7SToby Isaac   MPI_Request           reqs[2];
2592cc48ffa7SToby Isaac   const PetscInt        *ranges;
2593cc48ffa7SToby Isaac 
2594cc48ffa7SToby Isaac   PetscFunctionBegin;
2595cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2596cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2597cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2598637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2599637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2600637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2601637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2602637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2603637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr);
2604637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr);
2605637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2606637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2607cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2608cc48ffa7SToby Isaac   bn   = B->rmap->n;
2609637a0070SStefano Zampini   if (blda == bn) {
2610637a0070SStefano Zampini     sendbuf = (PetscScalar*)bv;
2611cc48ffa7SToby Isaac   } else {
2612cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2613cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2614cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2615637a0070SStefano Zampini         sendbuf[k] = bv[i * blda + j];
2616cc48ffa7SToby Isaac       }
2617cc48ffa7SToby Isaac     }
2618cc48ffa7SToby Isaac   }
2619cc48ffa7SToby Isaac   if (size > 1) {
2620cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2621cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2622cc48ffa7SToby Isaac   } else {
2623cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2624cc48ffa7SToby Isaac   }
2625cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2626cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2627cc48ffa7SToby Isaac   recvisfrom = rank;
2628cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2629cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2630cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2631cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2632cc48ffa7SToby Isaac 
2633cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2634cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2635cc48ffa7SToby Isaac       sendsiz = cK * bn;
2636cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2637cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2638cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
2639cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
2640cc48ffa7SToby Isaac     }
2641cc48ffa7SToby Isaac 
2642cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2643cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
264450ce3c9cSStefano Zampini     if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda));
2645cc48ffa7SToby Isaac 
2646cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2647cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2648cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
2649cc48ffa7SToby Isaac     }
2650cc48ffa7SToby Isaac     bn = nextbn;
2651cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2652cc48ffa7SToby Isaac     sendbuf = recvbuf;
2653cc48ffa7SToby Isaac   }
2654637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2655637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2656637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2657cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2658cc48ffa7SToby Isaac }
2659cc48ffa7SToby Isaac 
2660faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2661faa55883SToby Isaac {
2662faa55883SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2663faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2664faa55883SToby Isaac   PetscErrorCode        ierr;
2665faa55883SToby Isaac   MPI_Comm              comm;
2666637a0070SStefano Zampini   PetscMPIInt           size;
2667637a0070SStefano Zampini   PetscScalar           *cv, *sendbuf, *recvbuf;
2668637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2669637a0070SStefano Zampini   PetscInt              blda,i,cK=A->cmap->N,k,j,bn;
2670faa55883SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2671637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, clda;
2672faa55883SToby Isaac 
2673faa55883SToby Isaac   PetscFunctionBegin;
2674faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2675faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2676637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2677637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2678637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2679637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2680637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2681637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr);
2682637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2683637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2684faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2685faa55883SToby Isaac   bn      = B->rmap->n;
2686faa55883SToby Isaac   sendbuf = abt->buf[0];
2687faa55883SToby Isaac   recvbuf = abt->buf[1];
2688faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2689faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2690637a0070SStefano Zampini       sendbuf[k] = bv[i * blda + j];
2691faa55883SToby Isaac     }
2692faa55883SToby Isaac   }
2693637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2694faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
2695faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2696faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2697faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
269850ce3c9cSStefano Zampini   if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda));
2699637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2700637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2701637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2702faa55883SToby Isaac   PetscFunctionReturn(0);
2703faa55883SToby Isaac }
2704faa55883SToby Isaac 
2705faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2706faa55883SToby Isaac {
2707faa55883SToby Isaac   Mat_MPIDense          *c=(Mat_MPIDense*)C->data;
2708faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2709faa55883SToby Isaac   PetscErrorCode        ierr;
2710faa55883SToby Isaac 
2711faa55883SToby Isaac   PetscFunctionBegin;
2712faa55883SToby Isaac   switch (abt->alg) {
2713faa55883SToby Isaac   case 1:
2714faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2715faa55883SToby Isaac     break;
2716faa55883SToby Isaac   default:
2717faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2718faa55883SToby Isaac     break;
2719faa55883SToby Isaac   }
2720faa55883SToby Isaac   PetscFunctionReturn(0);
2721faa55883SToby Isaac }
2722faa55883SToby Isaac 
2723320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
2724320f2790SHong Zhang {
2725320f2790SHong Zhang   PetscErrorCode   ierr;
2726320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
2727320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
2728320f2790SHong Zhang 
2729320f2790SHong Zhang   PetscFunctionBegin;
2730320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2731320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2732320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2733320f2790SHong Zhang 
2734320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
2735320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2736320f2790SHong Zhang   PetscFunctionReturn(0);
2737320f2790SHong Zhang }
2738320f2790SHong Zhang 
27395242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2740320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2741320f2790SHong Zhang {
2742320f2790SHong Zhang   PetscErrorCode   ierr;
2743320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
2744320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
2745320f2790SHong Zhang 
2746320f2790SHong Zhang   PetscFunctionBegin;
2747de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2748de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
27494222ddf1SHong Zhang   ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2750de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2751320f2790SHong Zhang   PetscFunctionReturn(0);
2752320f2790SHong Zhang }
2753320f2790SHong Zhang 
27544222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2755320f2790SHong Zhang {
2756320f2790SHong Zhang   PetscErrorCode   ierr;
2757320f2790SHong Zhang   Mat              Ae,Be,Ce;
2758320f2790SHong Zhang   Mat_MPIDense     *c;
2759320f2790SHong Zhang   Mat_MatMultDense *ab;
2760320f2790SHong Zhang 
2761320f2790SHong Zhang   PetscFunctionBegin;
27624222ddf1SHong Zhang   /* check local size of A and B */
2763320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2764378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2765320f2790SHong Zhang   }
2766320f2790SHong Zhang 
27674222ddf1SHong Zhang   /* create elemental matrices Ae and Be */
27684222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr);
27694222ddf1SHong Zhang   ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
27704222ddf1SHong Zhang   ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr);
27714222ddf1SHong Zhang   ierr = MatSetUp(Ae);CHKERRQ(ierr);
27724222ddf1SHong Zhang   ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2773320f2790SHong Zhang 
27744222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr);
27754222ddf1SHong Zhang   ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr);
27764222ddf1SHong Zhang   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
27774222ddf1SHong Zhang   ierr = MatSetUp(Be);CHKERRQ(ierr);
27784222ddf1SHong Zhang   ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2779320f2790SHong Zhang 
27804222ddf1SHong Zhang   /* compute symbolic Ce = Ae*Be */
27814222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr);
27824222ddf1SHong Zhang   ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr);
27834222ddf1SHong Zhang 
27844222ddf1SHong Zhang   /* setup C */
27854222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
27864222ddf1SHong Zhang   ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr);
27874222ddf1SHong Zhang   ierr = MatSetUp(C);CHKERRQ(ierr);
2788320f2790SHong Zhang 
2789320f2790SHong Zhang   /* create data structure for reuse Cdense */
2790320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
27914222ddf1SHong Zhang   c                  = (Mat_MPIDense*)C->data;
2792320f2790SHong Zhang   c->abdense         = ab;
2793320f2790SHong Zhang 
2794320f2790SHong Zhang   ab->Ae             = Ae;
2795320f2790SHong Zhang   ab->Be             = Be;
2796320f2790SHong Zhang   ab->Ce             = Ce;
27974222ddf1SHong Zhang   ab->destroy        = C->ops->destroy;
27984222ddf1SHong Zhang   C->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
27994222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
28004222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
2801320f2790SHong Zhang   PetscFunctionReturn(0);
2802320f2790SHong Zhang }
28034222ddf1SHong Zhang #endif
28044222ddf1SHong Zhang /* ----------------------------------------------- */
28054222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
28064222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C)
2807320f2790SHong Zhang {
2808320f2790SHong Zhang   PetscFunctionBegin;
28094222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense;
28104222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
28114222ddf1SHong Zhang   C->ops->productnumeric  = MatProductNumeric_AB;
2812320f2790SHong Zhang   PetscFunctionReturn(0);
2813320f2790SHong Zhang }
28145242a7b1SHong Zhang #endif
281586aefd0dSHong Zhang 
28164222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C)
28174222ddf1SHong Zhang {
28184222ddf1SHong Zhang   PetscErrorCode ierr;
28194222ddf1SHong Zhang   Mat_Product    *product = C->product;
28204222ddf1SHong Zhang 
28214222ddf1SHong Zhang   PetscFunctionBegin;
28224222ddf1SHong Zhang   ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr);
28234222ddf1SHong Zhang   C->ops->productnumeric          = MatProductNumeric_AtB;
28244222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense;
28254222ddf1SHong Zhang   PetscFunctionReturn(0);
28264222ddf1SHong Zhang }
28274222ddf1SHong Zhang 
28284222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C)
28294222ddf1SHong Zhang {
28304222ddf1SHong Zhang   Mat_Product *product = C->product;
28314222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
28324222ddf1SHong Zhang 
28334222ddf1SHong Zhang   PetscFunctionBegin;
28344222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
28354222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
28364222ddf1SHong Zhang 
28374222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense;
28384222ddf1SHong Zhang   PetscFunctionReturn(0);
28394222ddf1SHong Zhang }
28404222ddf1SHong Zhang 
28414222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C)
28424222ddf1SHong Zhang {
28434222ddf1SHong Zhang   PetscErrorCode ierr;
28444222ddf1SHong Zhang   Mat_Product    *product = C->product;
28454222ddf1SHong Zhang   const char     *algTypes[2] = {"allgatherv","cyclic"};
28464222ddf1SHong Zhang   PetscInt       alg,nalg = 2;
28474222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
28484222ddf1SHong Zhang 
28494222ddf1SHong Zhang   PetscFunctionBegin;
28504222ddf1SHong Zhang   /* Set default algorithm */
28514222ddf1SHong Zhang   alg = 0; /* default is allgatherv */
28524222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr);
28534222ddf1SHong Zhang   if (flg) {
28544222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
28554222ddf1SHong Zhang   }
28564222ddf1SHong Zhang 
28574222ddf1SHong Zhang   /* Get runtime option */
28584222ddf1SHong Zhang   if (product->api_user) {
28594222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
28604222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
28614222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
28624222ddf1SHong Zhang   } else {
28634222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr);
28644222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
28654222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
28664222ddf1SHong Zhang   }
28674222ddf1SHong Zhang   if (flg) {
28684222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
28694222ddf1SHong Zhang   }
28704222ddf1SHong Zhang 
28714222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense;
28724222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
28734222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_ABt;
28744222ddf1SHong Zhang   PetscFunctionReturn(0);
28754222ddf1SHong Zhang }
28764222ddf1SHong Zhang 
28774222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C)
28784222ddf1SHong Zhang {
28794222ddf1SHong Zhang   PetscErrorCode ierr;
28804222ddf1SHong Zhang   Mat_Product    *product = C->product;
28814222ddf1SHong Zhang 
28824222ddf1SHong Zhang   PetscFunctionBegin;
28834222ddf1SHong Zhang   switch (product->type) {
28844222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
28854222ddf1SHong Zhang   case MATPRODUCT_AB:
28864222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr);
28874222ddf1SHong Zhang     break;
28884222ddf1SHong Zhang #endif
28894222ddf1SHong Zhang   case MATPRODUCT_AtB:
28904222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr);
28914222ddf1SHong Zhang     break;
28924222ddf1SHong Zhang   case MATPRODUCT_ABt:
28934222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr);
28944222ddf1SHong Zhang     break;
2895544a5e07SHong Zhang   default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]);
28964222ddf1SHong Zhang   }
28974222ddf1SHong Zhang   PetscFunctionReturn(0);
28984222ddf1SHong Zhang }
2899