1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 40ba8c8a56SBarry Smith { 41ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 42ba8c8a56SBarry Smith PetscErrorCode ierr; 43d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 44ba8c8a56SBarry Smith 45ba8c8a56SBarry Smith PetscFunctionBegin; 46e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 47ba8c8a56SBarry Smith lrow = row - rstart; 48ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 49ba8c8a56SBarry Smith PetscFunctionReturn(0); 50ba8c8a56SBarry Smith } 51ba8c8a56SBarry Smith 52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55ba8c8a56SBarry Smith PetscErrorCode ierr; 56637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 57ba8c8a56SBarry Smith 58ba8c8a56SBarry Smith PetscFunctionBegin; 59637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 60637a0070SStefano Zampini lrow = row - rstart; 61637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 62ba8c8a56SBarry Smith PetscFunctionReturn(0); 63ba8c8a56SBarry Smith } 64ba8c8a56SBarry Smith 6511bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 660de54da6SSatish Balay { 670de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 686849ba73SBarry Smith PetscErrorCode ierr; 69d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7087828ca2SBarry Smith PetscScalar *array; 710de54da6SSatish Balay MPI_Comm comm; 724b6ae80fSStefano Zampini PetscBool flg; 7311bd1e4dSLisandro Dalcin Mat B; 740de54da6SSatish Balay 750de54da6SSatish Balay PetscFunctionBegin; 764b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 774b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 7811bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 794b6ae80fSStefano Zampini if (!B) { /* This should use a new function, e.g. MatDenseGetSubMatrix (not create) */ 804b6ae80fSStefano Zampini 814b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 824b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 874b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 894b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 9913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1008965ea79SLois Curfman McInnes { 10139b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 102dfbe8321SBarry Smith PetscErrorCode ierr; 103d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 104ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1058965ea79SLois Curfman McInnes 1063a40ed3dSBarry Smith PetscFunctionBegin; 1078965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1085ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 109e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1108965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1118965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11239b7565bSBarry Smith if (roworiented) { 11339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1143a40ed3dSBarry Smith } else { 1158965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1165ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 117e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11939b7565bSBarry Smith } 1208965ea79SLois Curfman McInnes } 1212205254eSKarl Rupp } else if (!A->donotstash) { 1225080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12339b7565bSBarry Smith if (roworiented) { 124b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 125d36fbae8SSatish Balay } else { 126b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12739b7565bSBarry Smith } 128b49de8d1SLois Curfman McInnes } 129b49de8d1SLois Curfman McInnes } 1303a40ed3dSBarry Smith PetscFunctionReturn(0); 131b49de8d1SLois Curfman McInnes } 132b49de8d1SLois Curfman McInnes 13313f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 134b49de8d1SLois Curfman McInnes { 135b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 136dfbe8321SBarry Smith PetscErrorCode ierr; 137d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 138b49de8d1SLois Curfman McInnes 1393a40ed3dSBarry Smith PetscFunctionBegin; 140b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 141e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 142e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 143b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 144b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 145b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 146e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 147e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 148b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 149b49de8d1SLois Curfman McInnes } 150e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1518965ea79SLois Curfman McInnes } 1523a40ed3dSBarry Smith PetscFunctionReturn(0); 1538965ea79SLois Curfman McInnes } 1548965ea79SLois Curfman McInnes 15549a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 15649a6ff4bSBarry Smith { 15749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15849a6ff4bSBarry Smith PetscErrorCode ierr; 15949a6ff4bSBarry Smith 16049a6ff4bSBarry Smith PetscFunctionBegin; 16149a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 16249a6ff4bSBarry Smith PetscFunctionReturn(0); 16349a6ff4bSBarry Smith } 16449a6ff4bSBarry Smith 165*ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 166*ad16ce7aSStefano Zampini { 167*ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 168*ad16ce7aSStefano Zampini PetscErrorCode ierr; 169*ad16ce7aSStefano Zampini 170*ad16ce7aSStefano Zampini PetscFunctionBegin; 171*ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 172*ad16ce7aSStefano Zampini PetscFunctionReturn(0); 173*ad16ce7aSStefano Zampini } 174*ad16ce7aSStefano Zampini 175637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 176ff14e315SSatish Balay { 177ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 178dfbe8321SBarry Smith PetscErrorCode ierr; 179ff14e315SSatish Balay 1803a40ed3dSBarry Smith PetscFunctionBegin; 1818c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1823a40ed3dSBarry Smith PetscFunctionReturn(0); 183ff14e315SSatish Balay } 184ff14e315SSatish Balay 185637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 1868572280aSBarry Smith { 1878572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1888572280aSBarry Smith PetscErrorCode ierr; 1898572280aSBarry Smith 1908572280aSBarry Smith PetscFunctionBegin; 1918572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1928572280aSBarry Smith PetscFunctionReturn(0); 1938572280aSBarry Smith } 1948572280aSBarry Smith 1956947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 1966947451fSStefano Zampini { 1976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1986947451fSStefano Zampini PetscErrorCode ierr; 1996947451fSStefano Zampini 2006947451fSStefano Zampini PetscFunctionBegin; 2016947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2026947451fSStefano Zampini PetscFunctionReturn(0); 2036947451fSStefano Zampini } 2046947451fSStefano Zampini 205637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 206d3042a70SBarry Smith { 207d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 208d3042a70SBarry Smith PetscErrorCode ierr; 209d3042a70SBarry Smith 210d3042a70SBarry Smith PetscFunctionBegin; 2116947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 212d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 213d3042a70SBarry Smith PetscFunctionReturn(0); 214d3042a70SBarry Smith } 215d3042a70SBarry Smith 216d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 217d3042a70SBarry Smith { 218d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 219d3042a70SBarry Smith PetscErrorCode ierr; 220d3042a70SBarry Smith 221d3042a70SBarry Smith PetscFunctionBegin; 2226947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 223d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 224d3042a70SBarry Smith PetscFunctionReturn(0); 225d3042a70SBarry Smith } 226d3042a70SBarry Smith 227d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 228d5ea218eSStefano Zampini { 229d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 230d5ea218eSStefano Zampini PetscErrorCode ierr; 231d5ea218eSStefano Zampini 232d5ea218eSStefano Zampini PetscFunctionBegin; 233d5ea218eSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 234d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 235d5ea218eSStefano Zampini PetscFunctionReturn(0); 236d5ea218eSStefano Zampini } 237d5ea218eSStefano Zampini 2387dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 239ca3fa75bSLois Curfman McInnes { 240ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2416849ba73SBarry Smith PetscErrorCode ierr; 242637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2435d0c19d7SBarry Smith const PetscInt *irow,*icol; 244637a0070SStefano Zampini const PetscScalar *v; 245637a0070SStefano Zampini PetscScalar *bv; 246ca3fa75bSLois Curfman McInnes Mat newmat; 2474aa3045dSJed Brown IS iscol_local; 24842a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 249ca3fa75bSLois Curfman McInnes 250ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 25142a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 25242a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 25342a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 25442a884f0SBarry Smith 2554aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 256ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2574aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 258b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 259b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2604aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 261ca3fa75bSLois Curfman McInnes 262ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2637eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2647eba5e9cSLois Curfman McInnes original matrix! */ 265ca3fa75bSLois Curfman McInnes 266ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2677eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 268ca3fa75bSLois Curfman McInnes 269ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 270ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 271e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2727eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 273ca3fa75bSLois Curfman McInnes newmat = *B; 274ca3fa75bSLois Curfman McInnes } else { 275ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 276ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2774aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2787adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2790298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 280ca3fa75bSLois Curfman McInnes } 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 283ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 284637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 285637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 286637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 2874aa3045dSJed Brown for (i=0; i<Ncols; i++) { 288637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 289ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2907eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 291ca3fa75bSLois Curfman McInnes } 292ca3fa75bSLois Curfman McInnes } 293637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 294637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 295ca3fa75bSLois Curfman McInnes 296ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 297ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 298ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 299ca3fa75bSLois Curfman McInnes 300ca3fa75bSLois Curfman McInnes /* Free work space */ 301ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3025bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 30332bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 304ca3fa75bSLois Curfman McInnes *B = newmat; 305ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 306ca3fa75bSLois Curfman McInnes } 307ca3fa75bSLois Curfman McInnes 308637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 309ff14e315SSatish Balay { 31073a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 31173a71a0fSBarry Smith PetscErrorCode ierr; 31273a71a0fSBarry Smith 3133a40ed3dSBarry Smith PetscFunctionBegin; 3148c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3153a40ed3dSBarry Smith PetscFunctionReturn(0); 316ff14e315SSatish Balay } 317ff14e315SSatish Balay 318637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3198572280aSBarry Smith { 3208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3218572280aSBarry Smith PetscErrorCode ierr; 3228572280aSBarry Smith 3238572280aSBarry Smith PetscFunctionBegin; 3248572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3258572280aSBarry Smith PetscFunctionReturn(0); 3268572280aSBarry Smith } 3278572280aSBarry Smith 3286947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3296947451fSStefano Zampini { 3306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3316947451fSStefano Zampini PetscErrorCode ierr; 3326947451fSStefano Zampini 3336947451fSStefano Zampini PetscFunctionBegin; 3346947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3356947451fSStefano Zampini PetscFunctionReturn(0); 3366947451fSStefano Zampini } 3376947451fSStefano Zampini 338dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3398965ea79SLois Curfman McInnes { 34039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 341dfbe8321SBarry Smith PetscErrorCode ierr; 34213f74950SBarry Smith PetscInt nstash,reallocs; 3438965ea79SLois Curfman McInnes 3443a40ed3dSBarry Smith PetscFunctionBegin; 345910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 3468965ea79SLois Curfman McInnes 347d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3488798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 349ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3503a40ed3dSBarry Smith PetscFunctionReturn(0); 3518965ea79SLois Curfman McInnes } 3528965ea79SLois Curfman McInnes 353dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3548965ea79SLois Curfman McInnes { 35539ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3566849ba73SBarry Smith PetscErrorCode ierr; 35713f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 35813f74950SBarry Smith PetscMPIInt n; 35987828ca2SBarry Smith PetscScalar *val; 3608965ea79SLois Curfman McInnes 3613a40ed3dSBarry Smith PetscFunctionBegin; 362910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3638965ea79SLois Curfman McInnes /* wait on receives */ 3647ef1d9bdSSatish Balay while (1) { 3658798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3667ef1d9bdSSatish Balay if (!flg) break; 3678965ea79SLois Curfman McInnes 3687ef1d9bdSSatish Balay for (i=0; i<n;) { 3697ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3702205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3712205254eSKarl Rupp if (row[j] != rstart) break; 3722205254eSKarl Rupp } 3737ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3747ef1d9bdSSatish Balay else ncols = n-i; 3757ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3764b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3777ef1d9bdSSatish Balay i = j; 3788965ea79SLois Curfman McInnes } 3797ef1d9bdSSatish Balay } 3808798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 381910cf402Sprj- } 3828965ea79SLois Curfman McInnes 38339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 38439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3858965ea79SLois Curfman McInnes 3866d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 38739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3888965ea79SLois Curfman McInnes } 3893a40ed3dSBarry Smith PetscFunctionReturn(0); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 392dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3938965ea79SLois Curfman McInnes { 394dfbe8321SBarry Smith PetscErrorCode ierr; 39539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3963a40ed3dSBarry Smith 3973a40ed3dSBarry Smith PetscFunctionBegin; 3983a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3993a40ed3dSBarry Smith PetscFunctionReturn(0); 4008965ea79SLois Curfman McInnes } 4018965ea79SLois Curfman McInnes 402637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4038965ea79SLois Curfman McInnes { 40439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4056849ba73SBarry Smith PetscErrorCode ierr; 406637a0070SStefano Zampini PetscInt i,len,*lrows; 407637a0070SStefano Zampini 408637a0070SStefano Zampini PetscFunctionBegin; 409637a0070SStefano Zampini /* get locally owned rows */ 410637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 411637a0070SStefano Zampini /* fix right hand side if needed */ 412637a0070SStefano Zampini if (x && b) { 41397b48c8fSBarry Smith const PetscScalar *xx; 41497b48c8fSBarry Smith PetscScalar *bb; 4158965ea79SLois Curfman McInnes 41697b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 417637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 418637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 41997b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 420637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 42197b48c8fSBarry Smith } 422637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 423e2eb51b1SBarry Smith if (diag != 0.0) { 424637a0070SStefano Zampini Vec d; 425b9679d65SBarry Smith 426637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 427637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 428637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 429637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 430b9679d65SBarry Smith } 431606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4323a40ed3dSBarry Smith PetscFunctionReturn(0); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 435cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 436cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 437cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 438cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 439cc2e6a90SBarry Smith 440dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4418965ea79SLois Curfman McInnes { 44239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 443dfbe8321SBarry Smith PetscErrorCode ierr; 444637a0070SStefano Zampini const PetscScalar *ax; 445637a0070SStefano Zampini PetscScalar *ay; 446c456f294SBarry Smith 4473a40ed3dSBarry Smith PetscFunctionBegin; 448637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 450637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 451637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 453637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 454637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4553a40ed3dSBarry Smith PetscFunctionReturn(0); 4568965ea79SLois Curfman McInnes } 4578965ea79SLois Curfman McInnes 458dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4598965ea79SLois Curfman McInnes { 46039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 461dfbe8321SBarry Smith PetscErrorCode ierr; 462637a0070SStefano Zampini const PetscScalar *ax; 463637a0070SStefano Zampini PetscScalar *ay; 464c456f294SBarry Smith 4653a40ed3dSBarry Smith PetscFunctionBegin; 466637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 467637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 468637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 469637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 470637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 471637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 472637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4733a40ed3dSBarry Smith PetscFunctionReturn(0); 4748965ea79SLois Curfman McInnes } 4758965ea79SLois Curfman McInnes 476dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 477096963f5SLois Curfman McInnes { 478096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 479dfbe8321SBarry Smith PetscErrorCode ierr; 480637a0070SStefano Zampini const PetscScalar *ax; 481637a0070SStefano Zampini PetscScalar *ay; 482096963f5SLois Curfman McInnes 4833a40ed3dSBarry Smith PetscFunctionBegin; 484637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 485637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 486637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 488637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 489637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 490637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 491637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 4923a40ed3dSBarry Smith PetscFunctionReturn(0); 493096963f5SLois Curfman McInnes } 494096963f5SLois Curfman McInnes 495dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 496096963f5SLois Curfman McInnes { 497096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 498dfbe8321SBarry Smith PetscErrorCode ierr; 499637a0070SStefano Zampini const PetscScalar *ax; 500637a0070SStefano Zampini PetscScalar *ay; 501096963f5SLois Curfman McInnes 5023a40ed3dSBarry Smith PetscFunctionBegin; 5033501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 504637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 505637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 507637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 508637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 509637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 510637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 5113a40ed3dSBarry Smith PetscFunctionReturn(0); 512096963f5SLois Curfman McInnes } 513096963f5SLois Curfman McInnes 514dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5158965ea79SLois Curfman McInnes { 51639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 517dfbe8321SBarry Smith PetscErrorCode ierr; 518637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 51987828ca2SBarry Smith PetscScalar *x,zero = 0.0; 520637a0070SStefano Zampini const PetscScalar *av; 521ed3cc1f0SBarry Smith 5223a40ed3dSBarry Smith PetscFunctionBegin; 5232dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5241ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 525096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 526e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 527d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 528d0f46423SBarry Smith radd = A->rmap->rstart*m; 529637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 530637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 53144cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 532637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 533096963f5SLois Curfman McInnes } 534637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5351ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 5378965ea79SLois Curfman McInnes } 5388965ea79SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5408965ea79SLois Curfman McInnes { 5413501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 542dfbe8321SBarry Smith PetscErrorCode ierr; 543ed3cc1f0SBarry Smith 5443a40ed3dSBarry Smith PetscFunctionBegin; 545aa482453SBarry Smith #if defined(PETSC_USE_LOG) 546d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5478965ea79SLois Curfman McInnes #endif 5488798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5496bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5506bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 551637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5526947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 55301b82886SBarry Smith 554bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 555dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5568baccfbdSHong Zhang 55749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 558*ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5598baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5608572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5618572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5628572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5636947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5646947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 565d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 566d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 567d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5688baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5698baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5708baccfbdSHong Zhang #endif 571bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5724222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5734222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 574bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 575bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 57652c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr); 57752c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr); 5788baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5798baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 58086aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 58186aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 5826947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 5836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 5846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 5856947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 5866947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 5876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 5883a40ed3dSBarry Smith PetscFunctionReturn(0); 5898965ea79SLois Curfman McInnes } 59039ddd567SLois Curfman McInnes 59152c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 59252c5f739Sprj- 5939804daf3SBarry Smith #include <petscdraw.h> 5946849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 5958965ea79SLois Curfman McInnes { 59639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 597dfbe8321SBarry Smith PetscErrorCode ierr; 5987da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 59919fd82e9SBarry Smith PetscViewerType vtype; 600ace3abfcSBarry Smith PetscBool iascii,isdraw; 601b0a32e0cSBarry Smith PetscViewer sviewer; 602f3ef73ceSBarry Smith PetscViewerFormat format; 6038965ea79SLois Curfman McInnes 6043a40ed3dSBarry Smith PetscFunctionBegin; 605251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 606251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 60732077d6dSBarry Smith if (iascii) { 608b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 609b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 610456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6114e220ebcSLois Curfman McInnes MatInfo info; 612888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6131575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6147b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 615b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6161575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 617637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6183a40ed3dSBarry Smith PetscFunctionReturn(0); 619fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6203a40ed3dSBarry Smith PetscFunctionReturn(0); 6218965ea79SLois Curfman McInnes } 622f1af5d2fSBarry Smith } else if (isdraw) { 623b0a32e0cSBarry Smith PetscDraw draw; 624ace3abfcSBarry Smith PetscBool isnull; 625f1af5d2fSBarry Smith 626b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 627b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 628f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 629f1af5d2fSBarry Smith } 63077ed5343SBarry Smith 6317da1fb6eSBarry Smith { 6328965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6338965ea79SLois Curfman McInnes Mat A; 634d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 635ba8c8a56SBarry Smith PetscInt *cols; 636ba8c8a56SBarry Smith PetscScalar *vals; 6378965ea79SLois Curfman McInnes 638ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6398965ea79SLois Curfman McInnes if (!rank) { 640f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6413a40ed3dSBarry Smith } else { 642f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6438965ea79SLois Curfman McInnes } 6447adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 645878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6460298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6473bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6488965ea79SLois Curfman McInnes 64939ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 65039ddd567SLois Curfman McInnes but it's quick for now */ 65151022da4SBarry Smith A->insertmode = INSERT_VALUES; 6522205254eSKarl Rupp 6532205254eSKarl Rupp row = mat->rmap->rstart; 6542205254eSKarl Rupp m = mdn->A->rmap->n; 6558965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 656ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 657ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 658ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 65939ddd567SLois Curfman McInnes row++; 6608965ea79SLois Curfman McInnes } 6618965ea79SLois Curfman McInnes 6626d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6636d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6643f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 665b9b97703SBarry Smith if (!rank) { 6661a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6677da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6688965ea79SLois Curfman McInnes } 6693f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 670b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6716bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6728965ea79SLois Curfman McInnes } 6733a40ed3dSBarry Smith PetscFunctionReturn(0); 6748965ea79SLois Curfman McInnes } 6758965ea79SLois Curfman McInnes 676dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6778965ea79SLois Curfman McInnes { 678dfbe8321SBarry Smith PetscErrorCode ierr; 679ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6808965ea79SLois Curfman McInnes 681433994e6SBarry Smith PetscFunctionBegin; 682251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 683251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 684251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 685251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 6860f5bd95cSBarry Smith 68732077d6dSBarry Smith if (iascii || issocket || isdraw) { 688f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6890f5bd95cSBarry Smith } else if (isbinary) { 6908491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 69111aeaf0aSBarry Smith } 6923a40ed3dSBarry Smith PetscFunctionReturn(0); 6938965ea79SLois Curfman McInnes } 6948965ea79SLois Curfman McInnes 695dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6968965ea79SLois Curfman McInnes { 6973501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6983501a2bdSLois Curfman McInnes Mat mdn = mat->A; 699dfbe8321SBarry Smith PetscErrorCode ierr; 7003966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7018965ea79SLois Curfman McInnes 7023a40ed3dSBarry Smith PetscFunctionBegin; 7034e220ebcSLois Curfman McInnes info->block_size = 1.0; 7042205254eSKarl Rupp 7054e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7062205254eSKarl Rupp 7074e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7084e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7098965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7104e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7114e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7124e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7134e220ebcSLois Curfman McInnes info->memory = isend[3]; 7144e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7158965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7163966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7172205254eSKarl Rupp 7184e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7194e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7204e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7214e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7224e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7238965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7243966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7252205254eSKarl Rupp 7264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7318965ea79SLois Curfman McInnes } 7324e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7334e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7344e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7353a40ed3dSBarry Smith PetscFunctionReturn(0); 7368965ea79SLois Curfman McInnes } 7378965ea79SLois Curfman McInnes 738ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7398965ea79SLois Curfman McInnes { 74039ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 741dfbe8321SBarry Smith PetscErrorCode ierr; 7428965ea79SLois Curfman McInnes 7433a40ed3dSBarry Smith PetscFunctionBegin; 74412c028f9SKris Buschelman switch (op) { 745512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 74612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 74712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 74843674050SBarry Smith MatCheckPreallocated(A,1); 7494e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 75012c028f9SKris Buschelman break; 75112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 75243674050SBarry Smith MatCheckPreallocated(A,1); 7534e0d8c25SBarry Smith a->roworiented = flg; 7544e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 75512c028f9SKris Buschelman break; 7564e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 75713fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 75812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 759071fcb05SBarry Smith case MAT_SORTED_FULL: 760290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 76112c028f9SKris Buschelman break; 76212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7634e0d8c25SBarry Smith a->donotstash = flg; 76412c028f9SKris Buschelman break; 76577e54ba9SKris Buschelman case MAT_SYMMETRIC: 76677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7679a4540c5SBarry Smith case MAT_HERMITIAN: 7689a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 769600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7705d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 771290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 77277e54ba9SKris Buschelman break; 77312c028f9SKris Buschelman default: 774e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7753a40ed3dSBarry Smith } 7763a40ed3dSBarry Smith PetscFunctionReturn(0); 7778965ea79SLois Curfman McInnes } 7788965ea79SLois Curfman McInnes 779dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7805b2fa520SLois Curfman McInnes { 7815b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 782637a0070SStefano Zampini const PetscScalar *l; 783637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 784dfbe8321SBarry Smith PetscErrorCode ierr; 785637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7865b2fa520SLois Curfman McInnes 7875b2fa520SLois Curfman McInnes PetscFunctionBegin; 788637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 789637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 79072d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7915b2fa520SLois Curfman McInnes if (ll) { 79272d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 793637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 794bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 7955b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 7965b2fa520SLois Curfman McInnes x = l[i]; 797637a0070SStefano Zampini v = vv + i; 798637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 7995b2fa520SLois Curfman McInnes } 800bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 801637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8025b2fa520SLois Curfman McInnes } 8035b2fa520SLois Curfman McInnes if (rr) { 804637a0070SStefano Zampini const PetscScalar *ar; 805637a0070SStefano Zampini 806175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 807e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 808637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 809637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 810637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 811637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 812637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8135b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8145b2fa520SLois Curfman McInnes x = r[i]; 815637a0070SStefano Zampini v = vv + i*lda; 8162205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8175b2fa520SLois Curfman McInnes } 818637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 819637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8205b2fa520SLois Curfman McInnes } 821637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8225b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8235b2fa520SLois Curfman McInnes } 8245b2fa520SLois Curfman McInnes 825dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 826096963f5SLois Curfman McInnes { 8273501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 828dfbe8321SBarry Smith PetscErrorCode ierr; 82913f74950SBarry Smith PetscInt i,j; 830329f5518SBarry Smith PetscReal sum = 0.0; 831637a0070SStefano Zampini const PetscScalar *av,*v; 8323501a2bdSLois Curfman McInnes 8333a40ed3dSBarry Smith PetscFunctionBegin; 834637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 835637a0070SStefano Zampini v = av; 8363501a2bdSLois Curfman McInnes if (mdn->size == 1) { 837064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8383501a2bdSLois Curfman McInnes } else { 8393501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 840d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 841329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8423501a2bdSLois Curfman McInnes } 843b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8448f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 845dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8463a40ed3dSBarry Smith } else if (type == NORM_1) { 847329f5518SBarry Smith PetscReal *tmp,*tmp2; 848580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 849064f8208SBarry Smith *nrm = 0.0; 850637a0070SStefano Zampini v = av; 851d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 852d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 85367e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8543501a2bdSLois Curfman McInnes } 8553501a2bdSLois Curfman McInnes } 856b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 857d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 858064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8593501a2bdSLois Curfman McInnes } 8608627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 861d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8623a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 863329f5518SBarry Smith PetscReal ntemp; 8643501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 865b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 866ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8673501a2bdSLois Curfman McInnes } 868637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8693a40ed3dSBarry Smith PetscFunctionReturn(0); 8703501a2bdSLois Curfman McInnes } 8713501a2bdSLois Curfman McInnes 872fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8733501a2bdSLois Curfman McInnes { 8743501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8753501a2bdSLois Curfman McInnes Mat B; 876d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8776849ba73SBarry Smith PetscErrorCode ierr; 878637a0070SStefano Zampini PetscInt j,i,lda; 87987828ca2SBarry Smith PetscScalar *v; 8803501a2bdSLois Curfman McInnes 8813a40ed3dSBarry Smith PetscFunctionBegin; 882cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 883ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 884d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8857adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 8860298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 887637a0070SStefano Zampini } else B = *matout; 8883501a2bdSLois Curfman McInnes 889637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 890637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 891637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 892785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 8933501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8941acff37aSSatish Balay for (j=0; j<n; j++) { 8953501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 896637a0070SStefano Zampini v += lda; 8973501a2bdSLois Curfman McInnes } 898637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 899606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9006d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9016d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 902cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9033501a2bdSLois Curfman McInnes *matout = B; 9043501a2bdSLois Curfman McInnes } else { 90528be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9063501a2bdSLois Curfman McInnes } 9073a40ed3dSBarry Smith PetscFunctionReturn(0); 908096963f5SLois Curfman McInnes } 909096963f5SLois Curfman McInnes 9106849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 91152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9128965ea79SLois Curfman McInnes 9134994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 914273d9f13SBarry Smith { 915dfbe8321SBarry Smith PetscErrorCode ierr; 916273d9f13SBarry Smith 917273d9f13SBarry Smith PetscFunctionBegin; 91818992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 91918992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 92018992e5dSStefano Zampini if (!A->preallocated) { 921273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 92218992e5dSStefano Zampini } 923273d9f13SBarry Smith PetscFunctionReturn(0); 924273d9f13SBarry Smith } 925273d9f13SBarry Smith 926488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 927488007eeSBarry Smith { 928488007eeSBarry Smith PetscErrorCode ierr; 929488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 930488007eeSBarry Smith 931488007eeSBarry Smith PetscFunctionBegin; 932488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 933488007eeSBarry Smith PetscFunctionReturn(0); 934488007eeSBarry Smith } 935488007eeSBarry Smith 9367087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 937ba337c44SJed Brown { 938ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 939ba337c44SJed Brown PetscErrorCode ierr; 940ba337c44SJed Brown 941ba337c44SJed Brown PetscFunctionBegin; 942ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 943ba337c44SJed Brown PetscFunctionReturn(0); 944ba337c44SJed Brown } 945ba337c44SJed Brown 946ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 947ba337c44SJed Brown { 948ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 949ba337c44SJed Brown PetscErrorCode ierr; 950ba337c44SJed Brown 951ba337c44SJed Brown PetscFunctionBegin; 952ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 953ba337c44SJed Brown PetscFunctionReturn(0); 954ba337c44SJed Brown } 955ba337c44SJed Brown 956ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 957ba337c44SJed Brown { 958ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 959ba337c44SJed Brown PetscErrorCode ierr; 960ba337c44SJed Brown 961ba337c44SJed Brown PetscFunctionBegin; 962ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 963ba337c44SJed Brown PetscFunctionReturn(0); 964ba337c44SJed Brown } 965ba337c44SJed Brown 96649a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 96749a6ff4bSBarry Smith { 96849a6ff4bSBarry Smith PetscErrorCode ierr; 969637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 97049a6ff4bSBarry Smith 97149a6ff4bSBarry Smith PetscFunctionBegin; 972637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 973637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 974637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 97549a6ff4bSBarry Smith PetscFunctionReturn(0); 97649a6ff4bSBarry Smith } 97749a6ff4bSBarry Smith 97852c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 97952c5f739Sprj- 9800716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 9810716a85fSBarry Smith { 9820716a85fSBarry Smith PetscErrorCode ierr; 9830716a85fSBarry Smith PetscInt i,n; 9840716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9850716a85fSBarry Smith PetscReal *work; 9860716a85fSBarry Smith 9870716a85fSBarry Smith PetscFunctionBegin; 9880298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 989785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 9900716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 9910716a85fSBarry Smith if (type == NORM_2) { 9920716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 9930716a85fSBarry Smith } 9940716a85fSBarry Smith if (type == NORM_INFINITY) { 995b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 9960716a85fSBarry Smith } else { 997b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 9980716a85fSBarry Smith } 9990716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10000716a85fSBarry Smith if (type == NORM_2) { 10018f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10020716a85fSBarry Smith } 10030716a85fSBarry Smith PetscFunctionReturn(0); 10040716a85fSBarry Smith } 10050716a85fSBarry Smith 1006637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10076947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10086947451fSStefano Zampini { 10096947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10106947451fSStefano Zampini PetscErrorCode ierr; 10116947451fSStefano Zampini PetscInt lda; 10126947451fSStefano Zampini 10136947451fSStefano Zampini PetscFunctionBegin; 10146947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10156947451fSStefano Zampini if (!a->cvec) { 10166947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10176947451fSStefano Zampini } 10186947451fSStefano Zampini a->vecinuse = col + 1; 10196947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10206947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10216947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10226947451fSStefano Zampini *v = a->cvec; 10236947451fSStefano Zampini PetscFunctionReturn(0); 10246947451fSStefano Zampini } 10256947451fSStefano Zampini 10266947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10276947451fSStefano Zampini { 10286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10296947451fSStefano Zampini PetscErrorCode ierr; 10306947451fSStefano Zampini 10316947451fSStefano Zampini PetscFunctionBegin; 10326947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 10336947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10346947451fSStefano Zampini a->vecinuse = 0; 10356947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10366947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10376947451fSStefano Zampini *v = NULL; 10386947451fSStefano Zampini PetscFunctionReturn(0); 10396947451fSStefano Zampini } 10406947451fSStefano Zampini 10416947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10426947451fSStefano Zampini { 10436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10446947451fSStefano Zampini PetscInt lda; 10456947451fSStefano Zampini PetscErrorCode ierr; 10466947451fSStefano Zampini 10476947451fSStefano Zampini PetscFunctionBegin; 10486947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10496947451fSStefano Zampini if (!a->cvec) { 10506947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10516947451fSStefano Zampini } 10526947451fSStefano Zampini a->vecinuse = col + 1; 10536947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10546947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10556947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10566947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10576947451fSStefano Zampini *v = a->cvec; 10586947451fSStefano Zampini PetscFunctionReturn(0); 10596947451fSStefano Zampini } 10606947451fSStefano Zampini 10616947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10626947451fSStefano Zampini { 10636947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10646947451fSStefano Zampini PetscErrorCode ierr; 10656947451fSStefano Zampini 10666947451fSStefano Zampini PetscFunctionBegin; 10676947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 10686947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10696947451fSStefano Zampini a->vecinuse = 0; 10706947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10716947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 10726947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10736947451fSStefano Zampini *v = NULL; 10746947451fSStefano Zampini PetscFunctionReturn(0); 10756947451fSStefano Zampini } 10766947451fSStefano Zampini 10776947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10786947451fSStefano Zampini { 10796947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10806947451fSStefano Zampini PetscErrorCode ierr; 10816947451fSStefano Zampini PetscInt lda; 10826947451fSStefano Zampini 10836947451fSStefano Zampini PetscFunctionBegin; 10846947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10856947451fSStefano Zampini if (!a->cvec) { 10866947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10876947451fSStefano Zampini } 10886947451fSStefano Zampini a->vecinuse = col + 1; 10896947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10906947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10916947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10926947451fSStefano Zampini *v = a->cvec; 10936947451fSStefano Zampini PetscFunctionReturn(0); 10946947451fSStefano Zampini } 10956947451fSStefano Zampini 10966947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10976947451fSStefano Zampini { 10986947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10996947451fSStefano Zampini PetscErrorCode ierr; 11006947451fSStefano Zampini 11016947451fSStefano Zampini PetscFunctionBegin; 11026947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 11036947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 11046947451fSStefano Zampini a->vecinuse = 0; 11056947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11066947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11076947451fSStefano Zampini *v = NULL; 11086947451fSStefano Zampini PetscFunctionReturn(0); 11096947451fSStefano Zampini } 11106947451fSStefano Zampini 1111637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1112637a0070SStefano Zampini { 1113637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1114637a0070SStefano Zampini PetscErrorCode ierr; 1115637a0070SStefano Zampini 1116637a0070SStefano Zampini PetscFunctionBegin; 11176947451fSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1118637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1119637a0070SStefano Zampini PetscFunctionReturn(0); 1120637a0070SStefano Zampini } 1121637a0070SStefano Zampini 1122637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1123637a0070SStefano Zampini { 1124637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1125637a0070SStefano Zampini PetscErrorCode ierr; 1126637a0070SStefano Zampini 1127637a0070SStefano Zampini PetscFunctionBegin; 11286947451fSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1129637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1130637a0070SStefano Zampini PetscFunctionReturn(0); 1131637a0070SStefano Zampini } 1132637a0070SStefano Zampini 1133d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1134d5ea218eSStefano Zampini { 1135d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1136d5ea218eSStefano Zampini PetscErrorCode ierr; 1137d5ea218eSStefano Zampini 1138d5ea218eSStefano Zampini PetscFunctionBegin; 1139d5ea218eSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1140d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1141d5ea218eSStefano Zampini PetscFunctionReturn(0); 1142d5ea218eSStefano Zampini } 1143d5ea218eSStefano Zampini 1144637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1145637a0070SStefano Zampini { 1146637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1147637a0070SStefano Zampini PetscErrorCode ierr; 1148637a0070SStefano Zampini 1149637a0070SStefano Zampini PetscFunctionBegin; 1150637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1151637a0070SStefano Zampini PetscFunctionReturn(0); 1152637a0070SStefano Zampini } 1153637a0070SStefano Zampini 1154637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1155637a0070SStefano Zampini { 1156637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1157637a0070SStefano Zampini PetscErrorCode ierr; 1158637a0070SStefano Zampini 1159637a0070SStefano Zampini PetscFunctionBegin; 1160637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1161637a0070SStefano Zampini PetscFunctionReturn(0); 1162637a0070SStefano Zampini } 1163637a0070SStefano Zampini 1164637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1165637a0070SStefano Zampini { 1166637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1167637a0070SStefano Zampini PetscErrorCode ierr; 1168637a0070SStefano Zampini 1169637a0070SStefano Zampini PetscFunctionBegin; 1170637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1171637a0070SStefano Zampini PetscFunctionReturn(0); 1172637a0070SStefano Zampini } 1173637a0070SStefano Zampini 1174637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1175637a0070SStefano Zampini { 1176637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1177637a0070SStefano Zampini PetscErrorCode ierr; 1178637a0070SStefano Zampini 1179637a0070SStefano Zampini PetscFunctionBegin; 1180637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1181637a0070SStefano Zampini PetscFunctionReturn(0); 1182637a0070SStefano Zampini } 1183637a0070SStefano Zampini 1184637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1185637a0070SStefano Zampini { 1186637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1187637a0070SStefano Zampini PetscErrorCode ierr; 1188637a0070SStefano Zampini 1189637a0070SStefano Zampini PetscFunctionBegin; 1190637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1191637a0070SStefano Zampini PetscFunctionReturn(0); 1192637a0070SStefano Zampini } 1193637a0070SStefano Zampini 1194637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1195637a0070SStefano Zampini { 1196637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1197637a0070SStefano Zampini PetscErrorCode ierr; 1198637a0070SStefano Zampini 1199637a0070SStefano Zampini PetscFunctionBegin; 1200637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1201637a0070SStefano Zampini PetscFunctionReturn(0); 1202637a0070SStefano Zampini } 1203637a0070SStefano Zampini 12046947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12056947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12066947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12076947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12086947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12096947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12106947451fSStefano Zampini 1211637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1212637a0070SStefano Zampini { 1213637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1214637a0070SStefano Zampini PetscErrorCode ierr; 1215637a0070SStefano Zampini 1216637a0070SStefano Zampini PetscFunctionBegin; 12176947451fSStefano Zampini if (d->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1218637a0070SStefano Zampini if (d->A) { 1219637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1220637a0070SStefano Zampini } 1221637a0070SStefano Zampini mat->boundtocpu = bind; 12226947451fSStefano Zampini if (!bind) { 12236947451fSStefano Zampini PetscBool iscuda; 12246947451fSStefano Zampini 12256947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12266947451fSStefano Zampini if (!iscuda) { 12276947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 12286947451fSStefano Zampini } 12296947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12306947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12316947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12326947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12336947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12346947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12356947451fSStefano Zampini } else { 12366947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12376947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12386947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12396947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12406947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12416947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 12426947451fSStefano Zampini } 1243637a0070SStefano Zampini PetscFunctionReturn(0); 1244637a0070SStefano Zampini } 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1247637a0070SStefano Zampini { 1248637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1249637a0070SStefano Zampini PetscErrorCode ierr; 1250637a0070SStefano Zampini PetscBool iscuda; 1251637a0070SStefano Zampini 1252637a0070SStefano Zampini PetscFunctionBegin; 1253d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1254637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1255637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1256637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1257637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1258637a0070SStefano Zampini if (!d->A) { 1259637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1260637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1261637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1262637a0070SStefano Zampini } 1263637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1264637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1265637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1266637a0070SStefano Zampini PetscFunctionReturn(0); 1267637a0070SStefano Zampini } 1268637a0070SStefano Zampini #endif 1269637a0070SStefano Zampini 127073a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 127173a71a0fSBarry Smith { 127273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 127373a71a0fSBarry Smith PetscErrorCode ierr; 127473a71a0fSBarry Smith 127573a71a0fSBarry Smith PetscFunctionBegin; 1276637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 127773a71a0fSBarry Smith PetscFunctionReturn(0); 127873a71a0fSBarry Smith } 127973a71a0fSBarry Smith 128052c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1281fd4e9aacSBarry Smith 12823b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 12833b49f96aSBarry Smith { 12843b49f96aSBarry Smith PetscFunctionBegin; 12853b49f96aSBarry Smith *missing = PETSC_FALSE; 12863b49f96aSBarry Smith PetscFunctionReturn(0); 12873b49f96aSBarry Smith } 12883b49f96aSBarry Smith 12894222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1290cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1291cc48ffa7SToby Isaac 12928965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 129309dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 129409dc0095SBarry Smith MatGetRow_MPIDense, 129509dc0095SBarry Smith MatRestoreRow_MPIDense, 129609dc0095SBarry Smith MatMult_MPIDense, 129797304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 12987c922b88SBarry Smith MatMultTranspose_MPIDense, 12997c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 13008965ea79SLois Curfman McInnes 0, 130109dc0095SBarry Smith 0, 130209dc0095SBarry Smith 0, 130397304618SKris Buschelman /* 10*/ 0, 130409dc0095SBarry Smith 0, 130509dc0095SBarry Smith 0, 130609dc0095SBarry Smith 0, 130709dc0095SBarry Smith MatTranspose_MPIDense, 130897304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13096e4ee0c6SHong Zhang MatEqual_MPIDense, 131009dc0095SBarry Smith MatGetDiagonal_MPIDense, 13115b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 131209dc0095SBarry Smith MatNorm_MPIDense, 131397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 131409dc0095SBarry Smith MatAssemblyEnd_MPIDense, 131509dc0095SBarry Smith MatSetOption_MPIDense, 131609dc0095SBarry Smith MatZeroEntries_MPIDense, 1317d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1318919b68f7SBarry Smith 0, 131901b82886SBarry Smith 0, 132001b82886SBarry Smith 0, 132101b82886SBarry Smith 0, 13224994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1323273d9f13SBarry Smith 0, 132409dc0095SBarry Smith 0, 1325c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 13268c778c55SBarry Smith 0, 1327d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 132809dc0095SBarry Smith 0, 132909dc0095SBarry Smith 0, 133009dc0095SBarry Smith 0, 133109dc0095SBarry Smith 0, 1332d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13337dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 133409dc0095SBarry Smith 0, 133509dc0095SBarry Smith MatGetValues_MPIDense, 133609dc0095SBarry Smith 0, 1337d519adbfSMatthew Knepley /* 44*/ 0, 133809dc0095SBarry Smith MatScale_MPIDense, 13397d68702bSBarry Smith MatShift_Basic, 134009dc0095SBarry Smith 0, 134109dc0095SBarry Smith 0, 134273a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 134309dc0095SBarry Smith 0, 134409dc0095SBarry Smith 0, 134509dc0095SBarry Smith 0, 134609dc0095SBarry Smith 0, 1347d519adbfSMatthew Knepley /* 54*/ 0, 134809dc0095SBarry Smith 0, 134909dc0095SBarry Smith 0, 135009dc0095SBarry Smith 0, 135109dc0095SBarry Smith 0, 13527dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1353b9b97703SBarry Smith MatDestroy_MPIDense, 1354b9b97703SBarry Smith MatView_MPIDense, 1355357abbc8SBarry Smith 0, 135697304618SKris Buschelman 0, 1357d519adbfSMatthew Knepley /* 64*/ 0, 135897304618SKris Buschelman 0, 135997304618SKris Buschelman 0, 136097304618SKris Buschelman 0, 136197304618SKris Buschelman 0, 1362d519adbfSMatthew Knepley /* 69*/ 0, 136397304618SKris Buschelman 0, 136497304618SKris Buschelman 0, 136597304618SKris Buschelman 0, 136697304618SKris Buschelman 0, 1367d519adbfSMatthew Knepley /* 74*/ 0, 136897304618SKris Buschelman 0, 136997304618SKris Buschelman 0, 137097304618SKris Buschelman 0, 137197304618SKris Buschelman 0, 1372d519adbfSMatthew Knepley /* 79*/ 0, 137397304618SKris Buschelman 0, 137497304618SKris Buschelman 0, 137597304618SKris Buschelman 0, 13765bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1377865e5f61SKris Buschelman 0, 1378865e5f61SKris Buschelman 0, 1379865e5f61SKris Buschelman 0, 1380865e5f61SKris Buschelman 0, 1381865e5f61SKris Buschelman 0, 13824222ddf1SHong Zhang /* 89*/ 0, 13834222ddf1SHong Zhang 0, 1384fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 13852fbe02b9SBarry Smith 0, 1386ba337c44SJed Brown 0, 1387d519adbfSMatthew Knepley /* 94*/ 0, 13884222ddf1SHong Zhang 0, 13894222ddf1SHong Zhang 0, 1390cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1391ba337c44SJed Brown 0, 13924222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1393ba337c44SJed Brown 0, 1394ba337c44SJed Brown 0, 1395ba337c44SJed Brown MatConjugate_MPIDense, 1396ba337c44SJed Brown 0, 1397ba337c44SJed Brown /*104*/ 0, 1398ba337c44SJed Brown MatRealPart_MPIDense, 1399ba337c44SJed Brown MatImaginaryPart_MPIDense, 140086d161a7SShri Abhyankar 0, 140186d161a7SShri Abhyankar 0, 140286d161a7SShri Abhyankar /*109*/ 0, 140386d161a7SShri Abhyankar 0, 140486d161a7SShri Abhyankar 0, 140549a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14063b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 140786d161a7SShri Abhyankar /*114*/ 0, 140886d161a7SShri Abhyankar 0, 140986d161a7SShri Abhyankar 0, 141086d161a7SShri Abhyankar 0, 141186d161a7SShri Abhyankar 0, 141286d161a7SShri Abhyankar /*119*/ 0, 141386d161a7SShri Abhyankar 0, 141486d161a7SShri Abhyankar 0, 14150716a85fSBarry Smith 0, 14160716a85fSBarry Smith 0, 14170716a85fSBarry Smith /*124*/ 0, 14183964eb88SJed Brown MatGetColumnNorms_MPIDense, 14193964eb88SJed Brown 0, 14203964eb88SJed Brown 0, 14213964eb88SJed Brown 0, 14223964eb88SJed Brown /*129*/ 0, 14234222ddf1SHong Zhang 0, 14244222ddf1SHong Zhang 0, 1425cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 14263964eb88SJed Brown 0, 14273964eb88SJed Brown /*134*/ 0, 14283964eb88SJed Brown 0, 14293964eb88SJed Brown 0, 14303964eb88SJed Brown 0, 14313964eb88SJed Brown 0, 14323964eb88SJed Brown /*139*/ 0, 1433f9426fe0SMark Adams 0, 143494e2cb23SJakub Kruzik 0, 143594e2cb23SJakub Kruzik 0, 143694e2cb23SJakub Kruzik 0, 14374222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 14384222ddf1SHong Zhang /*145*/ 0, 14394222ddf1SHong Zhang 0, 14404222ddf1SHong Zhang 0 1441ba337c44SJed Brown }; 14428965ea79SLois Curfman McInnes 14437087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1444a23d5eceSKris Buschelman { 1445637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1446637a0070SStefano Zampini PetscBool iscuda; 1447dfbe8321SBarry Smith PetscErrorCode ierr; 1448a23d5eceSKris Buschelman 1449a23d5eceSKris Buschelman PetscFunctionBegin; 145034ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 145134ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1452637a0070SStefano Zampini if (!a->A) { 1453f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 14543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1455637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1456637a0070SStefano Zampini } 1457637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1458637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1459637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1460637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1461a23d5eceSKris Buschelman PetscFunctionReturn(0); 1462a23d5eceSKris Buschelman } 1463a23d5eceSKris Buschelman 146465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1465cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14668baccfbdSHong Zhang { 14678ea901baSHong Zhang Mat mat_elemental; 14688ea901baSHong Zhang PetscErrorCode ierr; 146932d7a744SHong Zhang PetscScalar *v; 147032d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 14718ea901baSHong Zhang 14728baccfbdSHong Zhang PetscFunctionBegin; 1473378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1474378336b6SHong Zhang mat_elemental = *newmat; 1475378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1476378336b6SHong Zhang } else { 1477378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1478378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1479378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1480378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 148132d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1482378336b6SHong Zhang } 1483378336b6SHong Zhang 148432d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 148532d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 148632d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 14878ea901baSHong Zhang 1488637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 148932d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 149032d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 14918ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14928ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 149332d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 149432d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 14958ea901baSHong Zhang 1496511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 149728be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 14988ea901baSHong Zhang } else { 14998ea901baSHong Zhang *newmat = mat_elemental; 15008ea901baSHong Zhang } 15018baccfbdSHong Zhang PetscFunctionReturn(0); 15028baccfbdSHong Zhang } 150365b80a83SHong Zhang #endif 15048baccfbdSHong Zhang 1505af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 150686aefd0dSHong Zhang { 150786aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 150886aefd0dSHong Zhang PetscErrorCode ierr; 150986aefd0dSHong Zhang 151086aefd0dSHong Zhang PetscFunctionBegin; 151186aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 151286aefd0dSHong Zhang PetscFunctionReturn(0); 151386aefd0dSHong Zhang } 151486aefd0dSHong Zhang 1515af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 151686aefd0dSHong Zhang { 151786aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 151886aefd0dSHong Zhang PetscErrorCode ierr; 151986aefd0dSHong Zhang 152086aefd0dSHong Zhang PetscFunctionBegin; 152186aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 152286aefd0dSHong Zhang PetscFunctionReturn(0); 152386aefd0dSHong Zhang } 152486aefd0dSHong Zhang 152594e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 152694e2cb23SJakub Kruzik { 152794e2cb23SJakub Kruzik PetscErrorCode ierr; 152894e2cb23SJakub Kruzik Mat_MPIDense *mat; 152994e2cb23SJakub Kruzik PetscInt m,nloc,N; 153094e2cb23SJakub Kruzik 153194e2cb23SJakub Kruzik PetscFunctionBegin; 153294e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 153394e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 153494e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 153594e2cb23SJakub Kruzik PetscInt sum; 153694e2cb23SJakub Kruzik 153794e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 153894e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 153994e2cb23SJakub Kruzik } 154094e2cb23SJakub Kruzik /* Check sum(n) = N */ 154194e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 154294e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 154394e2cb23SJakub Kruzik 154494e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 154594e2cb23SJakub Kruzik } 154694e2cb23SJakub Kruzik 154794e2cb23SJakub Kruzik /* numeric phase */ 154894e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 154994e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 155094e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 155194e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 155294e2cb23SJakub Kruzik PetscFunctionReturn(0); 155394e2cb23SJakub Kruzik } 155494e2cb23SJakub Kruzik 1555637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1556637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1557637a0070SStefano Zampini { 1558637a0070SStefano Zampini Mat B; 1559637a0070SStefano Zampini Mat_MPIDense *m; 1560637a0070SStefano Zampini PetscErrorCode ierr; 1561637a0070SStefano Zampini 1562637a0070SStefano Zampini PetscFunctionBegin; 1563637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1564637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1565637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1566637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1567637a0070SStefano Zampini } 1568637a0070SStefano Zampini 1569637a0070SStefano Zampini B = *newmat; 1570637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1571637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1572637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1573637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1574637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1575637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 1576637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 1577637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1578637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1579637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1580637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1581637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1582637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1583637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1584637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1585d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1586637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1587637a0070SStefano Zampini if (m->A) { 1588637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1589637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1590637a0070SStefano Zampini } 1591637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1592637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1593637a0070SStefano Zampini PetscFunctionReturn(0); 1594637a0070SStefano Zampini } 1595637a0070SStefano Zampini 1596637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1597637a0070SStefano Zampini { 1598637a0070SStefano Zampini Mat B; 1599637a0070SStefano Zampini Mat_MPIDense *m; 1600637a0070SStefano Zampini PetscErrorCode ierr; 1601637a0070SStefano Zampini 1602637a0070SStefano Zampini PetscFunctionBegin; 1603637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1604637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1605637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1606637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1607637a0070SStefano Zampini } 1608637a0070SStefano Zampini 1609637a0070SStefano Zampini B = *newmat; 1610637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1611637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1612637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1613637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1614637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1615637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1616637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1617637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1618637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1619637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1620637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1621637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1622637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1623637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1624d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1625637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1626637a0070SStefano Zampini if (m->A) { 1627637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1628637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1629637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1630637a0070SStefano Zampini } else { 1631637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1632637a0070SStefano Zampini } 1633637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1634637a0070SStefano Zampini 1635637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1636637a0070SStefano Zampini PetscFunctionReturn(0); 1637637a0070SStefano Zampini } 1638637a0070SStefano Zampini #endif 1639637a0070SStefano Zampini 16406947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16416947451fSStefano Zampini { 16426947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16436947451fSStefano Zampini PetscErrorCode ierr; 16446947451fSStefano Zampini PetscInt lda; 16456947451fSStefano Zampini 16466947451fSStefano Zampini PetscFunctionBegin; 16476947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 16486947451fSStefano Zampini if (!a->cvec) { 16496947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 16506947451fSStefano Zampini } 16516947451fSStefano Zampini a->vecinuse = col + 1; 16526947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 16536947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 16546947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 16556947451fSStefano Zampini *v = a->cvec; 16566947451fSStefano Zampini PetscFunctionReturn(0); 16576947451fSStefano Zampini } 16586947451fSStefano Zampini 16596947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16606947451fSStefano Zampini { 16616947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16626947451fSStefano Zampini PetscErrorCode ierr; 16636947451fSStefano Zampini 16646947451fSStefano Zampini PetscFunctionBegin; 16656947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 16666947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 16676947451fSStefano Zampini a->vecinuse = 0; 16686947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 16696947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 16706947451fSStefano Zampini *v = NULL; 16716947451fSStefano Zampini PetscFunctionReturn(0); 16726947451fSStefano Zampini } 16736947451fSStefano Zampini 16746947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 16756947451fSStefano Zampini { 16766947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16776947451fSStefano Zampini PetscErrorCode ierr; 16786947451fSStefano Zampini PetscInt lda; 16796947451fSStefano Zampini 16806947451fSStefano Zampini PetscFunctionBegin; 16816947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 16826947451fSStefano Zampini if (!a->cvec) { 16836947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 16846947451fSStefano Zampini } 16856947451fSStefano Zampini a->vecinuse = col + 1; 16866947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 16876947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 16886947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 16896947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 16906947451fSStefano Zampini *v = a->cvec; 16916947451fSStefano Zampini PetscFunctionReturn(0); 16926947451fSStefano Zampini } 16936947451fSStefano Zampini 16946947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 16956947451fSStefano Zampini { 16966947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16976947451fSStefano Zampini PetscErrorCode ierr; 16986947451fSStefano Zampini 16996947451fSStefano Zampini PetscFunctionBegin; 17006947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 17016947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17026947451fSStefano Zampini a->vecinuse = 0; 17036947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17046947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17056947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17066947451fSStefano Zampini *v = NULL; 17076947451fSStefano Zampini PetscFunctionReturn(0); 17086947451fSStefano Zampini } 17096947451fSStefano Zampini 17106947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17116947451fSStefano Zampini { 17126947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17136947451fSStefano Zampini PetscErrorCode ierr; 17146947451fSStefano Zampini PetscInt lda; 17156947451fSStefano Zampini 17166947451fSStefano Zampini PetscFunctionBegin; 17176947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 17186947451fSStefano Zampini if (!a->cvec) { 17196947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17206947451fSStefano Zampini } 17216947451fSStefano Zampini a->vecinuse = col + 1; 17226947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17236947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17246947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17256947451fSStefano Zampini *v = a->cvec; 17266947451fSStefano Zampini PetscFunctionReturn(0); 17276947451fSStefano Zampini } 17286947451fSStefano Zampini 17296947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17306947451fSStefano Zampini { 17316947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17326947451fSStefano Zampini PetscErrorCode ierr; 17336947451fSStefano Zampini 17346947451fSStefano Zampini PetscFunctionBegin; 17356947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 17366947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17376947451fSStefano Zampini a->vecinuse = 0; 17386947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17396947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17406947451fSStefano Zampini *v = NULL; 17416947451fSStefano Zampini PetscFunctionReturn(0); 17426947451fSStefano Zampini } 17436947451fSStefano Zampini 17448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1745273d9f13SBarry Smith { 1746273d9f13SBarry Smith Mat_MPIDense *a; 1747dfbe8321SBarry Smith PetscErrorCode ierr; 1748273d9f13SBarry Smith 1749273d9f13SBarry Smith PetscFunctionBegin; 1750b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1751b0a32e0cSBarry Smith mat->data = (void*)a; 1752273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1753273d9f13SBarry Smith 1754273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1755ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1756ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1757273d9f13SBarry Smith 1758273d9f13SBarry Smith /* build cache for off array entries formed */ 1759273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 17602205254eSKarl Rupp 1761ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1762273d9f13SBarry Smith 1763273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1764273d9f13SBarry Smith a->lvec = 0; 1765273d9f13SBarry Smith a->Mvctx = 0; 1766273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1767273d9f13SBarry Smith 176849a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1769*ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1770bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 17718572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 17728572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 17738572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 17746947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 17756947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1776d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1777d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1778d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 17796947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 17806947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 17816947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 17826947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 17836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 17846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 17858baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17868baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 17878baccfbdSHong Zhang #endif 1788637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1789637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1790637a0070SStefano Zampini #endif 1791bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 17924222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 17934222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1794bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1795bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 179652c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr); 179752c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr); 17988949adfdSHong Zhang 17998949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 18008949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1801af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1802af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 180338aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1804273d9f13SBarry Smith PetscFunctionReturn(0); 1805273d9f13SBarry Smith } 1806273d9f13SBarry Smith 1807209238afSKris Buschelman /*MC 1808637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1809637a0070SStefano Zampini 1810637a0070SStefano Zampini Options Database Keys: 1811637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1812637a0070SStefano Zampini 1813637a0070SStefano Zampini Level: beginner 1814637a0070SStefano Zampini 1815637a0070SStefano Zampini .seealso: 1816637a0070SStefano Zampini 1817637a0070SStefano Zampini M*/ 1818637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1819637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1820637a0070SStefano Zampini { 1821637a0070SStefano Zampini PetscErrorCode ierr; 1822637a0070SStefano Zampini 1823637a0070SStefano Zampini PetscFunctionBegin; 1824637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1825637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1826637a0070SStefano Zampini PetscFunctionReturn(0); 1827637a0070SStefano Zampini } 1828637a0070SStefano Zampini #endif 1829637a0070SStefano Zampini 1830637a0070SStefano Zampini /*MC 1831002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1832209238afSKris Buschelman 1833209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1834209238afSKris Buschelman and MATMPIDENSE otherwise. 1835209238afSKris Buschelman 1836209238afSKris Buschelman Options Database Keys: 1837209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1838209238afSKris Buschelman 1839209238afSKris Buschelman Level: beginner 1840209238afSKris Buschelman 184101b82886SBarry Smith 18426947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 18436947451fSStefano Zampini M*/ 18446947451fSStefano Zampini 18456947451fSStefano Zampini /*MC 18466947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 18476947451fSStefano Zampini 18486947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 18496947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 18506947451fSStefano Zampini 18516947451fSStefano Zampini Options Database Keys: 18526947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 18536947451fSStefano Zampini 18546947451fSStefano Zampini Level: beginner 18556947451fSStefano Zampini 18566947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1857209238afSKris Buschelman M*/ 1858209238afSKris Buschelman 1859273d9f13SBarry Smith /*@C 1860273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1861273d9f13SBarry Smith 1862273d9f13SBarry Smith Not collective 1863273d9f13SBarry Smith 1864273d9f13SBarry Smith Input Parameters: 18651c4f3114SJed Brown . B - the matrix 18660298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1867273d9f13SBarry Smith to control all matrix memory allocation. 1868273d9f13SBarry Smith 1869273d9f13SBarry Smith Notes: 1870273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1871273d9f13SBarry Smith storage by columns. 1872273d9f13SBarry Smith 1873273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1874273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 18750298fd71SBarry Smith set data=NULL. 1876273d9f13SBarry Smith 1877273d9f13SBarry Smith Level: intermediate 1878273d9f13SBarry Smith 1879273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1880273d9f13SBarry Smith @*/ 18811c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1882273d9f13SBarry Smith { 18834ac538c5SBarry Smith PetscErrorCode ierr; 1884273d9f13SBarry Smith 1885273d9f13SBarry Smith PetscFunctionBegin; 1886d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 18871c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1888273d9f13SBarry Smith PetscFunctionReturn(0); 1889273d9f13SBarry Smith } 1890273d9f13SBarry Smith 1891d3042a70SBarry Smith /*@ 1892637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 1893d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1894d3042a70SBarry Smith into a matrix 1895d3042a70SBarry Smith 1896d3042a70SBarry Smith Not Collective 1897d3042a70SBarry Smith 1898d3042a70SBarry Smith Input Parameters: 1899d3042a70SBarry Smith + mat - the matrix 1900d3042a70SBarry Smith - array - the array in column major order 1901d3042a70SBarry Smith 1902d3042a70SBarry Smith Notes: 1903d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1904d3042a70SBarry Smith freed when the matrix is destroyed. 1905d3042a70SBarry Smith 1906d3042a70SBarry Smith Level: developer 1907d3042a70SBarry Smith 1908d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1909d3042a70SBarry Smith 1910d3042a70SBarry Smith @*/ 1911637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 1912d3042a70SBarry Smith { 1913d3042a70SBarry Smith PetscErrorCode ierr; 1914637a0070SStefano Zampini 1915d3042a70SBarry Smith PetscFunctionBegin; 1916d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1917d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1918d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1919637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1920637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1921637a0070SStefano Zampini #endif 1922d3042a70SBarry Smith PetscFunctionReturn(0); 1923d3042a70SBarry Smith } 1924d3042a70SBarry Smith 1925d3042a70SBarry Smith /*@ 1926d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1927d3042a70SBarry Smith 1928d3042a70SBarry Smith Not Collective 1929d3042a70SBarry Smith 1930d3042a70SBarry Smith Input Parameters: 1931d3042a70SBarry Smith . mat - the matrix 1932d3042a70SBarry Smith 1933d3042a70SBarry Smith Notes: 1934d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1935d3042a70SBarry Smith 1936d3042a70SBarry Smith Level: developer 1937d3042a70SBarry Smith 1938d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1939d3042a70SBarry Smith 1940d3042a70SBarry Smith @*/ 1941d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1942d3042a70SBarry Smith { 1943d3042a70SBarry Smith PetscErrorCode ierr; 1944637a0070SStefano Zampini 1945d3042a70SBarry Smith PetscFunctionBegin; 1946d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1947d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1948d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1949d3042a70SBarry Smith PetscFunctionReturn(0); 1950d3042a70SBarry Smith } 1951d3042a70SBarry Smith 1952d5ea218eSStefano Zampini /*@ 1953d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1954d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1955d5ea218eSStefano Zampini into a matrix 1956d5ea218eSStefano Zampini 1957d5ea218eSStefano Zampini Not Collective 1958d5ea218eSStefano Zampini 1959d5ea218eSStefano Zampini Input Parameters: 1960d5ea218eSStefano Zampini + mat - the matrix 1961d5ea218eSStefano Zampini - array - the array in column major order 1962d5ea218eSStefano Zampini 1963d5ea218eSStefano Zampini Notes: 1964d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 1965d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1966d5ea218eSStefano Zampini 1967d5ea218eSStefano Zampini Level: developer 1968d5ea218eSStefano Zampini 1969d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 1970d5ea218eSStefano Zampini @*/ 1971d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 1972d5ea218eSStefano Zampini { 1973d5ea218eSStefano Zampini PetscErrorCode ierr; 1974d5ea218eSStefano Zampini 1975d5ea218eSStefano Zampini PetscFunctionBegin; 1976d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1977d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1978d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1979d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 1980d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1981d5ea218eSStefano Zampini #endif 1982d5ea218eSStefano Zampini PetscFunctionReturn(0); 1983d5ea218eSStefano Zampini } 1984d5ea218eSStefano Zampini 1985637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19868965ea79SLois Curfman McInnes /*@C 1987637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 1988637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 1989637a0070SStefano Zampini into a matrix 1990637a0070SStefano Zampini 1991637a0070SStefano Zampini Not Collective 1992637a0070SStefano Zampini 1993637a0070SStefano Zampini Input Parameters: 1994637a0070SStefano Zampini + mat - the matrix 1995637a0070SStefano Zampini - array - the array in column major order 1996637a0070SStefano Zampini 1997637a0070SStefano Zampini Notes: 1998637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 1999637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2000637a0070SStefano Zampini 2001637a0070SStefano Zampini Level: developer 2002637a0070SStefano Zampini 2003637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2004637a0070SStefano Zampini @*/ 2005637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2006637a0070SStefano Zampini { 2007637a0070SStefano Zampini PetscErrorCode ierr; 2008637a0070SStefano Zampini 2009637a0070SStefano Zampini PetscFunctionBegin; 2010d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2011637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2012637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2013637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2014637a0070SStefano Zampini PetscFunctionReturn(0); 2015637a0070SStefano Zampini } 2016637a0070SStefano Zampini 2017637a0070SStefano Zampini /*@C 2018637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2019637a0070SStefano Zampini 2020637a0070SStefano Zampini Not Collective 2021637a0070SStefano Zampini 2022637a0070SStefano Zampini Input Parameters: 2023637a0070SStefano Zampini . mat - the matrix 2024637a0070SStefano Zampini 2025637a0070SStefano Zampini Notes: 2026637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2027637a0070SStefano Zampini 2028637a0070SStefano Zampini Level: developer 2029637a0070SStefano Zampini 2030637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2031637a0070SStefano Zampini 2032637a0070SStefano Zampini @*/ 2033637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2034637a0070SStefano Zampini { 2035637a0070SStefano Zampini PetscErrorCode ierr; 2036637a0070SStefano Zampini 2037637a0070SStefano Zampini PetscFunctionBegin; 2038d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2039637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2040637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2041637a0070SStefano Zampini PetscFunctionReturn(0); 2042637a0070SStefano Zampini } 2043637a0070SStefano Zampini 2044637a0070SStefano Zampini /*@C 2045d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2046d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2047d5ea218eSStefano Zampini into a matrix 2048d5ea218eSStefano Zampini 2049d5ea218eSStefano Zampini Not Collective 2050d5ea218eSStefano Zampini 2051d5ea218eSStefano Zampini Input Parameters: 2052d5ea218eSStefano Zampini + mat - the matrix 2053d5ea218eSStefano Zampini - array - the array in column major order 2054d5ea218eSStefano Zampini 2055d5ea218eSStefano Zampini Notes: 2056d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2057d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2058d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2059d5ea218eSStefano Zampini 2060d5ea218eSStefano Zampini Level: developer 2061d5ea218eSStefano Zampini 2062d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2063d5ea218eSStefano Zampini @*/ 2064d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2065d5ea218eSStefano Zampini { 2066d5ea218eSStefano Zampini PetscErrorCode ierr; 2067d5ea218eSStefano Zampini 2068d5ea218eSStefano Zampini PetscFunctionBegin; 2069d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2070d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2071d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2072d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2073d5ea218eSStefano Zampini PetscFunctionReturn(0); 2074d5ea218eSStefano Zampini } 2075d5ea218eSStefano Zampini 2076d5ea218eSStefano Zampini /*@C 2077637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2078637a0070SStefano Zampini 2079637a0070SStefano Zampini Not Collective 2080637a0070SStefano Zampini 2081637a0070SStefano Zampini Input Parameters: 2082637a0070SStefano Zampini . A - the matrix 2083637a0070SStefano Zampini 2084637a0070SStefano Zampini Output Parameters 2085637a0070SStefano Zampini . array - the GPU array in column major order 2086637a0070SStefano Zampini 2087637a0070SStefano Zampini Notes: 2088637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2089637a0070SStefano Zampini 2090637a0070SStefano Zampini Level: developer 2091637a0070SStefano Zampini 2092637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2093637a0070SStefano Zampini @*/ 2094637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2095637a0070SStefano Zampini { 2096637a0070SStefano Zampini PetscErrorCode ierr; 2097637a0070SStefano Zampini 2098637a0070SStefano Zampini PetscFunctionBegin; 2099d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2100637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2101637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2102637a0070SStefano Zampini PetscFunctionReturn(0); 2103637a0070SStefano Zampini } 2104637a0070SStefano Zampini 2105637a0070SStefano Zampini /*@C 2106637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2107637a0070SStefano Zampini 2108637a0070SStefano Zampini Not Collective 2109637a0070SStefano Zampini 2110637a0070SStefano Zampini Input Parameters: 2111637a0070SStefano Zampini + A - the matrix 2112637a0070SStefano Zampini - array - the GPU array in column major order 2113637a0070SStefano Zampini 2114637a0070SStefano Zampini Notes: 2115637a0070SStefano Zampini 2116637a0070SStefano Zampini Level: developer 2117637a0070SStefano Zampini 2118637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2119637a0070SStefano Zampini @*/ 2120637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2121637a0070SStefano Zampini { 2122637a0070SStefano Zampini PetscErrorCode ierr; 2123637a0070SStefano Zampini 2124637a0070SStefano Zampini PetscFunctionBegin; 2125d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2126637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2127637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2128637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2129637a0070SStefano Zampini PetscFunctionReturn(0); 2130637a0070SStefano Zampini } 2131637a0070SStefano Zampini 2132637a0070SStefano Zampini /*@C 2133637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2134637a0070SStefano Zampini 2135637a0070SStefano Zampini Not Collective 2136637a0070SStefano Zampini 2137637a0070SStefano Zampini Input Parameters: 2138637a0070SStefano Zampini . A - the matrix 2139637a0070SStefano Zampini 2140637a0070SStefano Zampini Output Parameters 2141637a0070SStefano Zampini . array - the GPU array in column major order 2142637a0070SStefano Zampini 2143637a0070SStefano Zampini Notes: 2144637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2145637a0070SStefano Zampini 2146637a0070SStefano Zampini Level: developer 2147637a0070SStefano Zampini 2148637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2149637a0070SStefano Zampini @*/ 2150637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2151637a0070SStefano Zampini { 2152637a0070SStefano Zampini PetscErrorCode ierr; 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini PetscFunctionBegin; 2155d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2156637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2157637a0070SStefano Zampini PetscFunctionReturn(0); 2158637a0070SStefano Zampini } 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini /*@C 2161637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2162637a0070SStefano Zampini 2163637a0070SStefano Zampini Not Collective 2164637a0070SStefano Zampini 2165637a0070SStefano Zampini Input Parameters: 2166637a0070SStefano Zampini + A - the matrix 2167637a0070SStefano Zampini - array - the GPU array in column major order 2168637a0070SStefano Zampini 2169637a0070SStefano Zampini Notes: 2170637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2171637a0070SStefano Zampini 2172637a0070SStefano Zampini Level: developer 2173637a0070SStefano Zampini 2174637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2175637a0070SStefano Zampini @*/ 2176637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2177637a0070SStefano Zampini { 2178637a0070SStefano Zampini PetscErrorCode ierr; 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini PetscFunctionBegin; 2181637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2182637a0070SStefano Zampini PetscFunctionReturn(0); 2183637a0070SStefano Zampini } 2184637a0070SStefano Zampini 2185637a0070SStefano Zampini /*@C 2186637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2187637a0070SStefano Zampini 2188637a0070SStefano Zampini Not Collective 2189637a0070SStefano Zampini 2190637a0070SStefano Zampini Input Parameters: 2191637a0070SStefano Zampini . A - the matrix 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini Output Parameters 2194637a0070SStefano Zampini . array - the GPU array in column major order 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini Notes: 2197637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini Level: developer 2200637a0070SStefano Zampini 2201637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2202637a0070SStefano Zampini @*/ 2203637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2204637a0070SStefano Zampini { 2205637a0070SStefano Zampini PetscErrorCode ierr; 2206637a0070SStefano Zampini 2207637a0070SStefano Zampini PetscFunctionBegin; 2208d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2209637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2210637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2211637a0070SStefano Zampini PetscFunctionReturn(0); 2212637a0070SStefano Zampini } 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini /*@C 2215637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini Not Collective 2218637a0070SStefano Zampini 2219637a0070SStefano Zampini Input Parameters: 2220637a0070SStefano Zampini + A - the matrix 2221637a0070SStefano Zampini - array - the GPU array in column major order 2222637a0070SStefano Zampini 2223637a0070SStefano Zampini Notes: 2224637a0070SStefano Zampini 2225637a0070SStefano Zampini Level: developer 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2228637a0070SStefano Zampini @*/ 2229637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2230637a0070SStefano Zampini { 2231637a0070SStefano Zampini PetscErrorCode ierr; 2232637a0070SStefano Zampini 2233637a0070SStefano Zampini PetscFunctionBegin; 2234d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2235637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2236637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2237637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2238637a0070SStefano Zampini PetscFunctionReturn(0); 2239637a0070SStefano Zampini } 2240637a0070SStefano Zampini #endif 2241637a0070SStefano Zampini 2242637a0070SStefano Zampini /*@C 2243637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 22448965ea79SLois Curfman McInnes 2245d083f849SBarry Smith Collective 2246db81eaa0SLois Curfman McInnes 22478965ea79SLois Curfman McInnes Input Parameters: 2248db81eaa0SLois Curfman McInnes + comm - MPI communicator 22498965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2250db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 22518965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2252db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 22536cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2254dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 22558965ea79SLois Curfman McInnes 22568965ea79SLois Curfman McInnes Output Parameter: 2257477f1c0bSLois Curfman McInnes . A - the matrix 22588965ea79SLois Curfman McInnes 2259b259b22eSLois Curfman McInnes Notes: 226039ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 226139ddd567SLois Curfman McInnes storage by columns. 22628965ea79SLois Curfman McInnes 226318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 226418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 22656cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 226618f449edSLois Curfman McInnes 22678965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 22688965ea79SLois Curfman McInnes (possibly both). 22698965ea79SLois Curfman McInnes 2270027ccd11SLois Curfman McInnes Level: intermediate 2271027ccd11SLois Curfman McInnes 227239ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 22738965ea79SLois Curfman McInnes @*/ 227469b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 22758965ea79SLois Curfman McInnes { 22766849ba73SBarry Smith PetscErrorCode ierr; 227713f74950SBarry Smith PetscMPIInt size; 22788965ea79SLois Curfman McInnes 22793a40ed3dSBarry Smith PetscFunctionBegin; 2280f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 22818491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 2282f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2283273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2284273d9f13SBarry Smith if (size > 1) { 2285273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2286273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 22876cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 22886cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 22896cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 22906cfe35ddSJose E. Roman } 2291273d9f13SBarry Smith } else { 2292273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2293273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 22948c469469SLois Curfman McInnes } 22953a40ed3dSBarry Smith PetscFunctionReturn(0); 22968965ea79SLois Curfman McInnes } 22978965ea79SLois Curfman McInnes 2298637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2299637a0070SStefano Zampini /*@C 2300637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini Collective 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Input Parameters: 2305637a0070SStefano Zampini + comm - MPI communicator 2306637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2307637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2308637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2309637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2310637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2311637a0070SStefano Zampini to control matrix memory allocation. 2312637a0070SStefano Zampini 2313637a0070SStefano Zampini Output Parameter: 2314637a0070SStefano Zampini . A - the matrix 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini Notes: 2317637a0070SStefano Zampini 2318637a0070SStefano Zampini Level: intermediate 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2321637a0070SStefano Zampini @*/ 2322637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2323637a0070SStefano Zampini { 2324637a0070SStefano Zampini PetscErrorCode ierr; 2325637a0070SStefano Zampini PetscMPIInt size; 2326637a0070SStefano Zampini 2327637a0070SStefano Zampini PetscFunctionBegin; 2328637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2329637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2330637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2331637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2332637a0070SStefano Zampini if (size > 1) { 2333637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2334637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2335637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2336637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2337637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2338637a0070SStefano Zampini } 2339637a0070SStefano Zampini } else { 2340637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2341637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2342637a0070SStefano Zampini } 2343637a0070SStefano Zampini PetscFunctionReturn(0); 2344637a0070SStefano Zampini } 2345637a0070SStefano Zampini #endif 2346637a0070SStefano Zampini 23476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 23488965ea79SLois Curfman McInnes { 23498965ea79SLois Curfman McInnes Mat mat; 23503501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2351dfbe8321SBarry Smith PetscErrorCode ierr; 23528965ea79SLois Curfman McInnes 23533a40ed3dSBarry Smith PetscFunctionBegin; 23548965ea79SLois Curfman McInnes *newmat = 0; 2355ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2356d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 23577adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2358834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 23595aa7edbeSHong Zhang 2360d5f3da31SBarry Smith mat->factortype = A->factortype; 2361c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2362273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 23638965ea79SLois Curfman McInnes 23648965ea79SLois Curfman McInnes a->size = oldmat->size; 23658965ea79SLois Curfman McInnes a->rank = oldmat->rank; 2366e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 23673782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2368e04c1aa4SHong Zhang 23691e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 23701e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 23718965ea79SLois Curfman McInnes 23725609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 23733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2374637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 237501b82886SBarry Smith 23768965ea79SLois Curfman McInnes *newmat = mat; 23773a40ed3dSBarry Smith PetscFunctionReturn(0); 23788965ea79SLois Curfman McInnes } 23798965ea79SLois Curfman McInnes 2380eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2381eb91f321SVaclav Hapla { 2382eb91f321SVaclav Hapla PetscErrorCode ierr; 238387d5ce66SSatish Balay PetscBool isbinary; 238487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 238587d5ce66SSatish Balay PetscBool ishdf5; 238687d5ce66SSatish Balay #endif 2387eb91f321SVaclav Hapla 2388eb91f321SVaclav Hapla PetscFunctionBegin; 2389eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2390eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2391eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2392eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2393eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 239487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2395eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 239687d5ce66SSatish Balay #endif 2397eb91f321SVaclav Hapla if (isbinary) { 23988491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2399eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 240087d5ce66SSatish Balay } else if (ishdf5) { 2401eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2402eb91f321SVaclav Hapla #endif 240387d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2404eb91f321SVaclav Hapla PetscFunctionReturn(0); 2405eb91f321SVaclav Hapla } 2406eb91f321SVaclav Hapla 2407ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24086e4ee0c6SHong Zhang { 24096e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24106e4ee0c6SHong Zhang Mat a,b; 2411ace3abfcSBarry Smith PetscBool flg; 24126e4ee0c6SHong Zhang PetscErrorCode ierr; 241390ace30eSBarry Smith 24146e4ee0c6SHong Zhang PetscFunctionBegin; 24156e4ee0c6SHong Zhang a = matA->A; 24166e4ee0c6SHong Zhang b = matB->A; 24176e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2418b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 24196e4ee0c6SHong Zhang PetscFunctionReturn(0); 24206e4ee0c6SHong Zhang } 242190ace30eSBarry Smith 2422baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 2423baa3c1c6SHong Zhang { 2424baa3c1c6SHong Zhang PetscErrorCode ierr; 2425baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2426baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 2427baa3c1c6SHong Zhang 2428baa3c1c6SHong Zhang PetscFunctionBegin; 2429637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2430637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2431637a0070SStefano Zampini ierr = (*atb->destroy)(A);CHKERRQ(ierr); 2432baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2433baa3c1c6SHong Zhang PetscFunctionReturn(0); 2434baa3c1c6SHong Zhang } 2435baa3c1c6SHong Zhang 2436cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 2437cc48ffa7SToby Isaac { 2438cc48ffa7SToby Isaac PetscErrorCode ierr; 2439cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2440cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 2441cc48ffa7SToby Isaac 2442cc48ffa7SToby Isaac PetscFunctionBegin; 2443cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2444faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2445cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 2446cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2447cc48ffa7SToby Isaac PetscFunctionReturn(0); 2448cc48ffa7SToby Isaac } 2449cc48ffa7SToby Isaac 2450cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2451cb20be35SHong Zhang { 2452baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2453baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 2454cb20be35SHong Zhang PetscErrorCode ierr; 2455cb20be35SHong Zhang MPI_Comm comm; 2456637a0070SStefano Zampini PetscMPIInt size,*recvcounts=atb->recvcounts; 2457637a0070SStefano Zampini PetscScalar *carray,*sendbuf=atb->sendbuf; 2458637a0070SStefano Zampini const PetscScalar *atbarray; 2459d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2460e68c0b26SHong Zhang const PetscInt *ranges; 2461cb20be35SHong Zhang 2462cb20be35SHong Zhang PetscFunctionBegin; 2463cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2464cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2465e68c0b26SHong Zhang 2466c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2467637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2468cb20be35SHong Zhang 2469cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2470c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2471cb20be35SHong Zhang 2472660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2473637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2474637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2475baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2476c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2477cb20be35SHong Zhang } 2478cb20be35SHong Zhang } 2479637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2480637a0070SStefano Zampini 2481c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 2482660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 24833462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 2484660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 2485cb20be35SHong Zhang PetscFunctionReturn(0); 2486cb20be35SHong Zhang } 2487cb20be35SHong Zhang 24884222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2489cb20be35SHong Zhang { 2490cb20be35SHong Zhang PetscErrorCode ierr; 2491cb20be35SHong Zhang MPI_Comm comm; 2492baa3c1c6SHong Zhang PetscMPIInt size; 2493660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2494baa3c1c6SHong Zhang Mat_MPIDense *c; 2495baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 2496cb20be35SHong Zhang 2497cb20be35SHong Zhang PetscFunctionBegin; 2498baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2499cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2500cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2501cb20be35SHong Zhang } 2502cb20be35SHong Zhang 25034222ddf1SHong Zhang /* create matrix product C */ 25044222ddf1SHong Zhang ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 25054222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 250618992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 25074222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25084222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2509baa3c1c6SHong Zhang 25104222ddf1SHong Zhang /* create data structure for reuse C */ 2511baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2512baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 25134222ddf1SHong Zhang cM = C->rmap->N; 2514637a0070SStefano Zampini ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 2515baa3c1c6SHong Zhang 25164222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2517baa3c1c6SHong Zhang c->atbdense = atb; 25184222ddf1SHong Zhang atb->destroy = C->ops->destroy; 25194222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2520cb20be35SHong Zhang PetscFunctionReturn(0); 2521cb20be35SHong Zhang } 2522cb20be35SHong Zhang 25234222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2524cb20be35SHong Zhang { 2525cb20be35SHong Zhang PetscErrorCode ierr; 2526cc48ffa7SToby Isaac MPI_Comm comm; 2527cc48ffa7SToby Isaac PetscMPIInt i, size; 2528cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2529cc48ffa7SToby Isaac Mat_MPIDense *c; 2530cc48ffa7SToby Isaac PetscMPIInt tag; 25314222ddf1SHong Zhang PetscInt alg; 2532cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 25334222ddf1SHong Zhang Mat_Product *product = C->product; 25344222ddf1SHong Zhang PetscBool flg; 2535cc48ffa7SToby Isaac 2536cc48ffa7SToby Isaac PetscFunctionBegin; 25374222ddf1SHong Zhang /* check local size of A and B */ 2538637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2539cc48ffa7SToby Isaac 25404222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2541637a0070SStefano Zampini alg = flg ? 0 : 1; 2542cc48ffa7SToby Isaac 25434222ddf1SHong Zhang /* setup matrix product C */ 25444222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 25454222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 254618992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 25474222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr); 25484222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25494222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25504222ddf1SHong Zhang 25514222ddf1SHong Zhang /* create data structure for reuse C */ 25524222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2553cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2554cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2555cc48ffa7SToby Isaac abt->tag = tag; 2556faa55883SToby Isaac abt->alg = alg; 2557faa55883SToby Isaac switch (alg) { 25584222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2559cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2560cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2561cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2562faa55883SToby Isaac break; 25634222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2564faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2565faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2566faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2567faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2568faa55883SToby Isaac break; 2569faa55883SToby Isaac } 2570cc48ffa7SToby Isaac 25714222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2572cc48ffa7SToby Isaac c->abtdense = abt; 25734222ddf1SHong Zhang abt->destroy = C->ops->destroy; 25744222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 25754222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2576cc48ffa7SToby Isaac PetscFunctionReturn(0); 2577cc48ffa7SToby Isaac } 2578cc48ffa7SToby Isaac 2579faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2580cc48ffa7SToby Isaac { 2581cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2582cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2583cc48ffa7SToby Isaac PetscErrorCode ierr; 2584cc48ffa7SToby Isaac MPI_Comm comm; 2585cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2586637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2587cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2588cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2589637a0070SStefano Zampini const PetscScalar *av,*bv; 2590637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2591cc48ffa7SToby Isaac MPI_Request reqs[2]; 2592cc48ffa7SToby Isaac const PetscInt *ranges; 2593cc48ffa7SToby Isaac 2594cc48ffa7SToby Isaac PetscFunctionBegin; 2595cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2596cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2597cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2598637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2599637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2600637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2601637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2602637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2603637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2604637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2605637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2606637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2607cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2608cc48ffa7SToby Isaac bn = B->rmap->n; 2609637a0070SStefano Zampini if (blda == bn) { 2610637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2611cc48ffa7SToby Isaac } else { 2612cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2613cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2614cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2615637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2616cc48ffa7SToby Isaac } 2617cc48ffa7SToby Isaac } 2618cc48ffa7SToby Isaac } 2619cc48ffa7SToby Isaac if (size > 1) { 2620cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2621cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2622cc48ffa7SToby Isaac } else { 2623cc48ffa7SToby Isaac sendto = recvfrom = 0; 2624cc48ffa7SToby Isaac } 2625cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2626cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2627cc48ffa7SToby Isaac recvisfrom = rank; 2628cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2629cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2630cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2631cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2632cc48ffa7SToby Isaac 2633cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2634cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2635cc48ffa7SToby Isaac sendsiz = cK * bn; 2636cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2637cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2638cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2639cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2640cc48ffa7SToby Isaac } 2641cc48ffa7SToby Isaac 2642cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2643cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 264450ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2645cc48ffa7SToby Isaac 2646cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2647cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2648cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2649cc48ffa7SToby Isaac } 2650cc48ffa7SToby Isaac bn = nextbn; 2651cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2652cc48ffa7SToby Isaac sendbuf = recvbuf; 2653cc48ffa7SToby Isaac } 2654637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2655637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2656637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2657cc48ffa7SToby Isaac PetscFunctionReturn(0); 2658cc48ffa7SToby Isaac } 2659cc48ffa7SToby Isaac 2660faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2661faa55883SToby Isaac { 2662faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2663faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2664faa55883SToby Isaac PetscErrorCode ierr; 2665faa55883SToby Isaac MPI_Comm comm; 2666637a0070SStefano Zampini PetscMPIInt size; 2667637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2668637a0070SStefano Zampini const PetscScalar *av,*bv; 2669637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2670faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2671637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2672faa55883SToby Isaac 2673faa55883SToby Isaac PetscFunctionBegin; 2674faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2675faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2676637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2677637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2678637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2679637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2680637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2681637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2682637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2683637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2684faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2685faa55883SToby Isaac bn = B->rmap->n; 2686faa55883SToby Isaac sendbuf = abt->buf[0]; 2687faa55883SToby Isaac recvbuf = abt->buf[1]; 2688faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2689faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2690637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2691faa55883SToby Isaac } 2692faa55883SToby Isaac } 2693637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2694faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2695faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2696faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2697faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 269850ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2699637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2700637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2701637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2702faa55883SToby Isaac PetscFunctionReturn(0); 2703faa55883SToby Isaac } 2704faa55883SToby Isaac 2705faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2706faa55883SToby Isaac { 2707faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2708faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2709faa55883SToby Isaac PetscErrorCode ierr; 2710faa55883SToby Isaac 2711faa55883SToby Isaac PetscFunctionBegin; 2712faa55883SToby Isaac switch (abt->alg) { 2713faa55883SToby Isaac case 1: 2714faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2715faa55883SToby Isaac break; 2716faa55883SToby Isaac default: 2717faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2718faa55883SToby Isaac break; 2719faa55883SToby Isaac } 2720faa55883SToby Isaac PetscFunctionReturn(0); 2721faa55883SToby Isaac } 2722faa55883SToby Isaac 2723320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 2724320f2790SHong Zhang { 2725320f2790SHong Zhang PetscErrorCode ierr; 2726320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2727320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 2728320f2790SHong Zhang 2729320f2790SHong Zhang PetscFunctionBegin; 2730320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2731320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2732320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2733320f2790SHong Zhang 2734320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 2735320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2736320f2790SHong Zhang PetscFunctionReturn(0); 2737320f2790SHong Zhang } 2738320f2790SHong Zhang 27395242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2740320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2741320f2790SHong Zhang { 2742320f2790SHong Zhang PetscErrorCode ierr; 2743320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2744320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 2745320f2790SHong Zhang 2746320f2790SHong Zhang PetscFunctionBegin; 2747de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2748de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 27494222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2750de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2751320f2790SHong Zhang PetscFunctionReturn(0); 2752320f2790SHong Zhang } 2753320f2790SHong Zhang 27544222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2755320f2790SHong Zhang { 2756320f2790SHong Zhang PetscErrorCode ierr; 2757320f2790SHong Zhang Mat Ae,Be,Ce; 2758320f2790SHong Zhang Mat_MPIDense *c; 2759320f2790SHong Zhang Mat_MatMultDense *ab; 2760320f2790SHong Zhang 2761320f2790SHong Zhang PetscFunctionBegin; 27624222ddf1SHong Zhang /* check local size of A and B */ 2763320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2764378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2765320f2790SHong Zhang } 2766320f2790SHong Zhang 27674222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 27684222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 27694222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 27704222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 27714222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 27724222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2773320f2790SHong Zhang 27744222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 27754222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 27764222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 27774222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 27784222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2779320f2790SHong Zhang 27804222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 27814222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 27824222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 27834222ddf1SHong Zhang 27844222ddf1SHong Zhang /* setup C */ 27854222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 27864222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 27874222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2788320f2790SHong Zhang 2789320f2790SHong Zhang /* create data structure for reuse Cdense */ 2790320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 27914222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2792320f2790SHong Zhang c->abdense = ab; 2793320f2790SHong Zhang 2794320f2790SHong Zhang ab->Ae = Ae; 2795320f2790SHong Zhang ab->Be = Be; 2796320f2790SHong Zhang ab->Ce = Ce; 27974222ddf1SHong Zhang ab->destroy = C->ops->destroy; 27984222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 27994222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 28004222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2801320f2790SHong Zhang PetscFunctionReturn(0); 2802320f2790SHong Zhang } 28034222ddf1SHong Zhang #endif 28044222ddf1SHong Zhang /* ----------------------------------------------- */ 28054222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28064222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2807320f2790SHong Zhang { 2808320f2790SHong Zhang PetscFunctionBegin; 28094222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28104222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 28114222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2812320f2790SHong Zhang PetscFunctionReturn(0); 2813320f2790SHong Zhang } 28145242a7b1SHong Zhang #endif 281586aefd0dSHong Zhang 28164222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C) 28174222ddf1SHong Zhang { 28184222ddf1SHong Zhang PetscErrorCode ierr; 28194222ddf1SHong Zhang Mat_Product *product = C->product; 28204222ddf1SHong Zhang 28214222ddf1SHong Zhang PetscFunctionBegin; 28224222ddf1SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr); 28234222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 28244222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense; 28254222ddf1SHong Zhang PetscFunctionReturn(0); 28264222ddf1SHong Zhang } 28274222ddf1SHong Zhang 28284222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 28294222ddf1SHong Zhang { 28304222ddf1SHong Zhang Mat_Product *product = C->product; 28314222ddf1SHong Zhang Mat A = product->A,B=product->B; 28324222ddf1SHong Zhang 28334222ddf1SHong Zhang PetscFunctionBegin; 28344222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 28354222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 28364222ddf1SHong Zhang 28374222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense; 28384222ddf1SHong Zhang PetscFunctionReturn(0); 28394222ddf1SHong Zhang } 28404222ddf1SHong Zhang 28414222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 28424222ddf1SHong Zhang { 28434222ddf1SHong Zhang PetscErrorCode ierr; 28444222ddf1SHong Zhang Mat_Product *product = C->product; 28454222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 28464222ddf1SHong Zhang PetscInt alg,nalg = 2; 28474222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 28484222ddf1SHong Zhang 28494222ddf1SHong Zhang PetscFunctionBegin; 28504222ddf1SHong Zhang /* Set default algorithm */ 28514222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 28524222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 28534222ddf1SHong Zhang if (flg) { 28544222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 28554222ddf1SHong Zhang } 28564222ddf1SHong Zhang 28574222ddf1SHong Zhang /* Get runtime option */ 28584222ddf1SHong Zhang if (product->api_user) { 28594222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 28604222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 28614222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 28624222ddf1SHong Zhang } else { 28634222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 28644222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 28654222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 28664222ddf1SHong Zhang } 28674222ddf1SHong Zhang if (flg) { 28684222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 28694222ddf1SHong Zhang } 28704222ddf1SHong Zhang 28714222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 28724222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 28734222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_ABt; 28744222ddf1SHong Zhang PetscFunctionReturn(0); 28754222ddf1SHong Zhang } 28764222ddf1SHong Zhang 28774222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 28784222ddf1SHong Zhang { 28794222ddf1SHong Zhang PetscErrorCode ierr; 28804222ddf1SHong Zhang Mat_Product *product = C->product; 28814222ddf1SHong Zhang 28824222ddf1SHong Zhang PetscFunctionBegin; 28834222ddf1SHong Zhang switch (product->type) { 28844222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28854222ddf1SHong Zhang case MATPRODUCT_AB: 28864222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 28874222ddf1SHong Zhang break; 28884222ddf1SHong Zhang #endif 28894222ddf1SHong Zhang case MATPRODUCT_AtB: 28904222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 28914222ddf1SHong Zhang break; 28924222ddf1SHong Zhang case MATPRODUCT_ABt: 28934222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 28944222ddf1SHong Zhang break; 2895544a5e07SHong Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]); 28964222ddf1SHong Zhang } 28974222ddf1SHong Zhang PetscFunctionReturn(0); 28984222ddf1SHong Zhang } 2899