xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision af53bab2956e8bb6f58eb885f6bc79bb2eef2743)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
9baa3c1c6SHong Zhang #include <petscblaslapack.h>
108965ea79SLois Curfman McInnes 
11ab92ecdeSBarry Smith /*@
12ab92ecdeSBarry Smith 
13ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
14ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
15ab92ecdeSBarry Smith 
16ab92ecdeSBarry Smith     Input Parameter:
17ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
18ab92ecdeSBarry Smith 
19ab92ecdeSBarry Smith     Output Parameter:
20ab92ecdeSBarry Smith .      B - the inner matrix
21ab92ecdeSBarry Smith 
228e6c10adSSatish Balay     Level: intermediate
238e6c10adSSatish Balay 
24ab92ecdeSBarry Smith @*/
25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
26ab92ecdeSBarry Smith {
27ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
28ab92ecdeSBarry Smith   PetscErrorCode ierr;
29ace3abfcSBarry Smith   PetscBool      flg;
30ab92ecdeSBarry Smith 
31ab92ecdeSBarry Smith   PetscFunctionBegin;
32251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
332205254eSKarl Rupp   if (flg) *B = mat->A;
342205254eSKarl Rupp   else *B = A;
35ab92ecdeSBarry Smith   PetscFunctionReturn(0);
36ab92ecdeSBarry Smith }
37ab92ecdeSBarry Smith 
38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
39ba8c8a56SBarry Smith {
40ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
41ba8c8a56SBarry Smith   PetscErrorCode ierr;
42d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
43ba8c8a56SBarry Smith 
44ba8c8a56SBarry Smith   PetscFunctionBegin;
45e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
46ba8c8a56SBarry Smith   lrow = row - rstart;
47ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
48ba8c8a56SBarry Smith   PetscFunctionReturn(0);
49ba8c8a56SBarry Smith }
50ba8c8a56SBarry Smith 
51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
52ba8c8a56SBarry Smith {
53ba8c8a56SBarry Smith   PetscErrorCode ierr;
54ba8c8a56SBarry Smith 
55ba8c8a56SBarry Smith   PetscFunctionBegin;
56ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
57ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
6111bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
620de54da6SSatish Balay {
630de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
646849ba73SBarry Smith   PetscErrorCode ierr;
65d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6687828ca2SBarry Smith   PetscScalar    *array;
670de54da6SSatish Balay   MPI_Comm       comm;
6811bd1e4dSLisandro Dalcin   Mat            B;
690de54da6SSatish Balay 
700de54da6SSatish Balay   PetscFunctionBegin;
71e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
720de54da6SSatish Balay 
7311bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7411bd1e4dSLisandro Dalcin   if (!B) {
750de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7611bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
7811bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
798c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8011bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
818c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8211bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     *a   = B;
8611bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
872205254eSKarl Rupp   } else *a = B;
880de54da6SSatish Balay   PetscFunctionReturn(0);
890de54da6SSatish Balay }
900de54da6SSatish Balay 
9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
928965ea79SLois Curfman McInnes {
9339b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
94dfbe8321SBarry Smith   PetscErrorCode ierr;
95d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
96ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
978965ea79SLois Curfman McInnes 
983a40ed3dSBarry Smith   PetscFunctionBegin;
998965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1005ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
101e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1028965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1038965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10439b7565bSBarry Smith       if (roworiented) {
10539b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1063a40ed3dSBarry Smith       } else {
1078965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1085ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
109e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11039b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11139b7565bSBarry Smith         }
1128965ea79SLois Curfman McInnes       }
1132205254eSKarl Rupp     } else if (!A->donotstash) {
1145080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11539b7565bSBarry Smith       if (roworiented) {
116b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
117d36fbae8SSatish Balay       } else {
118b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
11939b7565bSBarry Smith       }
120b49de8d1SLois Curfman McInnes     }
121b49de8d1SLois Curfman McInnes   }
1223a40ed3dSBarry Smith   PetscFunctionReturn(0);
123b49de8d1SLois Curfman McInnes }
124b49de8d1SLois Curfman McInnes 
12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
126b49de8d1SLois Curfman McInnes {
127b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
128dfbe8321SBarry Smith   PetscErrorCode ierr;
129d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
130b49de8d1SLois Curfman McInnes 
1313a40ed3dSBarry Smith   PetscFunctionBegin;
132b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
133e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
134e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
135b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
136b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
137b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
138e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
139e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
140b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
141b49de8d1SLois Curfman McInnes       }
142e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1438965ea79SLois Curfman McInnes   }
1443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1458965ea79SLois Curfman McInnes }
1468965ea79SLois Curfman McInnes 
147d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
148ff14e315SSatish Balay {
149ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
150dfbe8321SBarry Smith   PetscErrorCode ierr;
151ff14e315SSatish Balay 
1523a40ed3dSBarry Smith   PetscFunctionBegin;
1538c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1543a40ed3dSBarry Smith   PetscFunctionReturn(0);
155ff14e315SSatish Balay }
156ff14e315SSatish Balay 
157d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[])
158d3042a70SBarry Smith {
159d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
160d3042a70SBarry Smith   PetscErrorCode ierr;
161d3042a70SBarry Smith 
162d3042a70SBarry Smith   PetscFunctionBegin;
163d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
164d3042a70SBarry Smith   PetscFunctionReturn(0);
165d3042a70SBarry Smith }
166d3042a70SBarry Smith 
167d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
168d3042a70SBarry Smith {
169d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
170d3042a70SBarry Smith   PetscErrorCode ierr;
171d3042a70SBarry Smith 
172d3042a70SBarry Smith   PetscFunctionBegin;
173d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
174d3042a70SBarry Smith   PetscFunctionReturn(0);
175d3042a70SBarry Smith }
176d3042a70SBarry Smith 
1777dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
178ca3fa75bSLois Curfman McInnes {
179ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
180ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1816849ba73SBarry Smith   PetscErrorCode ierr;
1824aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
1835d0c19d7SBarry Smith   const PetscInt *irow,*icol;
18487828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
185ca3fa75bSLois Curfman McInnes   Mat            newmat;
1864aa3045dSJed Brown   IS             iscol_local;
187ca3fa75bSLois Curfman McInnes 
188ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
1894aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
190ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
1914aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
192b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
193b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
1944aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
195ca3fa75bSLois Curfman McInnes 
196ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1977eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1987eba5e9cSLois Curfman McInnes      original matrix! */
199ca3fa75bSLois Curfman McInnes 
200ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2017eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
202ca3fa75bSLois Curfman McInnes 
203ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
204ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
205e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2067eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
207ca3fa75bSLois Curfman McInnes     newmat = *B;
208ca3fa75bSLois Curfman McInnes   } else {
209ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
210ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2114aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2127adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2130298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
214ca3fa75bSLois Curfman McInnes   }
215ca3fa75bSLois Curfman McInnes 
216ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
217ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
218ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
219ca3fa75bSLois Curfman McInnes 
2204aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
22125a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
222ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2237eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
224ca3fa75bSLois Curfman McInnes     }
225ca3fa75bSLois Curfman McInnes   }
226ca3fa75bSLois Curfman McInnes 
227ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
228ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
229ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Free work space */
232ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2335bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
23432bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
235ca3fa75bSLois Curfman McInnes   *B   = newmat;
236ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
237ca3fa75bSLois Curfman McInnes }
238ca3fa75bSLois Curfman McInnes 
2398c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
240ff14e315SSatish Balay {
24173a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
24273a71a0fSBarry Smith   PetscErrorCode ierr;
24373a71a0fSBarry Smith 
2443a40ed3dSBarry Smith   PetscFunctionBegin;
2458c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2463a40ed3dSBarry Smith   PetscFunctionReturn(0);
247ff14e315SSatish Balay }
248ff14e315SSatish Balay 
249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2508965ea79SLois Curfman McInnes {
25139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
252ce94432eSBarry Smith   MPI_Comm       comm;
253dfbe8321SBarry Smith   PetscErrorCode ierr;
25413f74950SBarry Smith   PetscInt       nstash,reallocs;
2558965ea79SLois Curfman McInnes   InsertMode     addv;
2568965ea79SLois Curfman McInnes 
2573a40ed3dSBarry Smith   PetscFunctionBegin;
258ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2598965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
260b2566f29SBarry Smith   ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
261ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
262e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2638965ea79SLois Curfman McInnes 
264d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
266ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2673a40ed3dSBarry Smith   PetscFunctionReturn(0);
2688965ea79SLois Curfman McInnes }
2698965ea79SLois Curfman McInnes 
270dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2718965ea79SLois Curfman McInnes {
27239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
2736849ba73SBarry Smith   PetscErrorCode ierr;
27413f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
27513f74950SBarry Smith   PetscMPIInt    n;
27687828ca2SBarry Smith   PetscScalar    *val;
2778965ea79SLois Curfman McInnes 
2783a40ed3dSBarry Smith   PetscFunctionBegin;
2798965ea79SLois Curfman McInnes   /*  wait on receives */
2807ef1d9bdSSatish Balay   while (1) {
2818798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2827ef1d9bdSSatish Balay     if (!flg) break;
2838965ea79SLois Curfman McInnes 
2847ef1d9bdSSatish Balay     for (i=0; i<n;) {
2857ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2862205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
2872205254eSKarl Rupp         if (row[j] != rstart) break;
2882205254eSKarl Rupp       }
2897ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2907ef1d9bdSSatish Balay       else       ncols = n-i;
2917ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2924b4eb8d3SJed Brown       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
2937ef1d9bdSSatish Balay       i    = j;
2948965ea79SLois Curfman McInnes     }
2957ef1d9bdSSatish Balay   }
2968798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
2978965ea79SLois Curfman McInnes 
29839ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
29939ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3008965ea79SLois Curfman McInnes 
3016d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30239ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3038965ea79SLois Curfman McInnes   }
3043a40ed3dSBarry Smith   PetscFunctionReturn(0);
3058965ea79SLois Curfman McInnes }
3068965ea79SLois Curfman McInnes 
307dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3088965ea79SLois Curfman McInnes {
309dfbe8321SBarry Smith   PetscErrorCode ierr;
31039ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3113a40ed3dSBarry Smith 
3123a40ed3dSBarry Smith   PetscFunctionBegin;
3133a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3143a40ed3dSBarry Smith   PetscFunctionReturn(0);
3158965ea79SLois Curfman McInnes }
3168965ea79SLois Curfman McInnes 
3178965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3188965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3198965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3203501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3218965ea79SLois Curfman McInnes    routine.
3228965ea79SLois Curfman McInnes */
3232b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3248965ea79SLois Curfman McInnes {
32539ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3266849ba73SBarry Smith   PetscErrorCode    ierr;
327d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
32876ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
32913f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3307adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33113f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
33213f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
333ce94432eSBarry Smith   MPI_Comm          comm;
3348965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3358965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
336ace3abfcSBarry Smith   PetscBool         found;
33797b48c8fSBarry Smith   const PetscScalar *xx;
33897b48c8fSBarry Smith   PetscScalar       *bb;
3398965ea79SLois Curfman McInnes 
3403a40ed3dSBarry Smith   PetscFunctionBegin;
341ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
342ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
343b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3448965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
345f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
346037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3478965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3488965ea79SLois Curfman McInnes     idx   = rows[i];
34935d8aa7fSBarry Smith     found = PETSC_FALSE;
3508965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3518965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
35276ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3538965ea79SLois Curfman McInnes       }
3548965ea79SLois Curfman McInnes     }
355e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3568965ea79SLois Curfman McInnes   }
3572205254eSKarl Rupp   nsends = 0;
35876ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3598965ea79SLois Curfman McInnes 
3608965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
36176ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3628965ea79SLois Curfman McInnes 
3638965ea79SLois Curfman McInnes   /* post receives:   */
364785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
365854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
3668965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
36713f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3688965ea79SLois Curfman McInnes   }
3698965ea79SLois Curfman McInnes 
3708965ea79SLois Curfman McInnes   /* do sends:
3718965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3728965ea79SLois Curfman McInnes          the ith processor
3738965ea79SLois Curfman McInnes   */
374854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
375854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
376854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
3778965ea79SLois Curfman McInnes 
3788965ea79SLois Curfman McInnes   starts[0] = 0;
37976ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3802205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
3812205254eSKarl Rupp 
3822205254eSKarl Rupp   starts[0] = 0;
38376ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3848965ea79SLois Curfman McInnes   count = 0;
3858965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
38676ec1555SBarry Smith     if (sizes[2*i+1]) {
38776ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3888965ea79SLois Curfman McInnes     }
3898965ea79SLois Curfman McInnes   }
390606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3918965ea79SLois Curfman McInnes 
3928965ea79SLois Curfman McInnes   base = owners[rank];
3938965ea79SLois Curfman McInnes 
3948965ea79SLois Curfman McInnes   /*  wait on receives */
395dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
39674ed9c26SBarry Smith   count = nrecvs;
39774ed9c26SBarry Smith   slen  = 0;
3988965ea79SLois Curfman McInnes   while (count) {
399ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4008965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40113f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4022205254eSKarl Rupp 
4038965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4048965ea79SLois Curfman McInnes     lens[imdex]   = n;
4058965ea79SLois Curfman McInnes     slen += n;
4068965ea79SLois Curfman McInnes     count--;
4078965ea79SLois Curfman McInnes   }
408606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4098965ea79SLois Curfman McInnes 
4108965ea79SLois Curfman McInnes   /* move the data into the send scatter */
411854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes   count = 0;
4138965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4148965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4158965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4168965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4178965ea79SLois Curfman McInnes     }
4188965ea79SLois Curfman McInnes   }
419606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
42074ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
421606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
42276ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4238965ea79SLois Curfman McInnes 
42497b48c8fSBarry Smith   /* fix right hand side if needed */
42597b48c8fSBarry Smith   if (x && b) {
42697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
42797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
42897b48c8fSBarry Smith     for (i=0; i<slen; i++) {
42997b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
43097b48c8fSBarry Smith     }
43197b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
43297b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
43397b48c8fSBarry Smith   }
43497b48c8fSBarry Smith 
4358965ea79SLois Curfman McInnes   /* actually zap the local rows */
436b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
437e2eb51b1SBarry Smith   if (diag != 0.0) {
438b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
439b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
440b9679d65SBarry Smith 
441b9679d65SBarry Smith     for (i=0; i<slen; i++) {
442b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
443b9679d65SBarry Smith     }
444b9679d65SBarry Smith   }
445606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4468965ea79SLois Curfman McInnes 
4478965ea79SLois Curfman McInnes   /* wait on sends */
4488965ea79SLois Curfman McInnes   if (nsends) {
449785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
450ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
451606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4528965ea79SLois Curfman McInnes   }
453606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
454606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4553a40ed3dSBarry Smith   PetscFunctionReturn(0);
4568965ea79SLois Curfman McInnes }
4578965ea79SLois Curfman McInnes 
458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
460cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
461cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
462cc2e6a90SBarry Smith 
463dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4648965ea79SLois Curfman McInnes {
46539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
466dfbe8321SBarry Smith   PetscErrorCode ierr;
467c456f294SBarry Smith 
4683a40ed3dSBarry Smith   PetscFunctionBegin;
469ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
470ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
471cc2e6a90SBarry Smith   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4723a40ed3dSBarry Smith   PetscFunctionReturn(0);
4738965ea79SLois Curfman McInnes }
4748965ea79SLois Curfman McInnes 
475dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4768965ea79SLois Curfman McInnes {
47739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479c456f294SBarry Smith 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
481ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
482ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
483cc2e6a90SBarry Smith   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4843a40ed3dSBarry Smith   PetscFunctionReturn(0);
4858965ea79SLois Curfman McInnes }
4868965ea79SLois Curfman McInnes 
487dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
488096963f5SLois Curfman McInnes {
489096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
490dfbe8321SBarry Smith   PetscErrorCode ierr;
49187828ca2SBarry Smith   PetscScalar    zero = 0.0;
492096963f5SLois Curfman McInnes 
4933a40ed3dSBarry Smith   PetscFunctionBegin;
4942dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
495cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
496ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
497ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4983a40ed3dSBarry Smith   PetscFunctionReturn(0);
499096963f5SLois Curfman McInnes }
500096963f5SLois Curfman McInnes 
501dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
502096963f5SLois Curfman McInnes {
503096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
504dfbe8321SBarry Smith   PetscErrorCode ierr;
505096963f5SLois Curfman McInnes 
5063a40ed3dSBarry Smith   PetscFunctionBegin;
5073501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
508cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
509ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
510ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5113a40ed3dSBarry Smith   PetscFunctionReturn(0);
512096963f5SLois Curfman McInnes }
513096963f5SLois Curfman McInnes 
514dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5158965ea79SLois Curfman McInnes {
51639ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
517096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
518dfbe8321SBarry Smith   PetscErrorCode ierr;
519d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
52087828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
521ed3cc1f0SBarry Smith 
5223a40ed3dSBarry Smith   PetscFunctionBegin;
5232dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5241ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
525096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
526e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
527d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
528d0f46423SBarry Smith   radd = A->rmap->rstart*m;
52944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
530096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
531096963f5SLois Curfman McInnes   }
5321ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5333a40ed3dSBarry Smith   PetscFunctionReturn(0);
5348965ea79SLois Curfman McInnes }
5358965ea79SLois Curfman McInnes 
536dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5378965ea79SLois Curfman McInnes {
5383501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
539dfbe8321SBarry Smith   PetscErrorCode ierr;
540ed3cc1f0SBarry Smith 
5413a40ed3dSBarry Smith   PetscFunctionBegin;
542aa482453SBarry Smith #if defined(PETSC_USE_LOG)
543d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5448965ea79SLois Curfman McInnes #endif
5458798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5466bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5476bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5486bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
54901b82886SBarry Smith 
550bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
551dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5528baccfbdSHong Zhang 
5538baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
554d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
555d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
556d3042a70SBarry Smith 
5578baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5588baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5598baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5608baccfbdSHong Zhang #endif
561bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
562bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
563bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
564bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5658baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5668baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5678baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
56886aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
56986aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
5703a40ed3dSBarry Smith   PetscFunctionReturn(0);
5718965ea79SLois Curfman McInnes }
57239ddd567SLois Curfman McInnes 
5736849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5748965ea79SLois Curfman McInnes {
57539ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
576dfbe8321SBarry Smith   PetscErrorCode    ierr;
577aa05aa95SBarry Smith   PetscViewerFormat format;
578aa05aa95SBarry Smith   int               fd;
579d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
580aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
581578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
582aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
5837056b6fcSBarry Smith 
5843a40ed3dSBarry Smith   PetscFunctionBegin;
58539ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58639ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
587aa05aa95SBarry Smith   } else {
588aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
589ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
590ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
591aa05aa95SBarry Smith 
592aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
593f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
594aa05aa95SBarry Smith 
595aa05aa95SBarry Smith       if (!rank) {
596aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
5970700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
598d0f46423SBarry Smith         header[1] = mat->rmap->N;
599aa05aa95SBarry Smith         header[2] = N;
600aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
601aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
602aa05aa95SBarry Smith 
603aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
604d0f46423SBarry Smith         mmax = mat->rmap->n;
605aa05aa95SBarry Smith         for (i=1; i<size; i++) {
606d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6078965ea79SLois Curfman McInnes         }
608785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
609aa05aa95SBarry Smith 
610aa05aa95SBarry Smith         /* write out local array, by rows */
611d0f46423SBarry Smith         m = mat->rmap->n;
612aa05aa95SBarry Smith         v = a->v;
613aa05aa95SBarry Smith         for (j=0; j<N; j++) {
614aa05aa95SBarry Smith           for (i=0; i<m; i++) {
615578230a0SSatish Balay             work[j + i*N] = *v++;
616aa05aa95SBarry Smith           }
617aa05aa95SBarry Smith         }
618aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
619aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
620aa05aa95SBarry Smith         mmax = 0;
621aa05aa95SBarry Smith         for (i=1; i<size; i++) {
622d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
623aa05aa95SBarry Smith         }
624785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
625aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
626f8009846SMatthew Knepley           v    = vv;
627d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
628ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
629aa05aa95SBarry Smith 
630aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
631aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
632578230a0SSatish Balay               work[j + i*N] = *v++;
633aa05aa95SBarry Smith             }
634aa05aa95SBarry Smith           }
635aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
636aa05aa95SBarry Smith         }
637aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
638578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
639aa05aa95SBarry Smith       } else {
640ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
641aa05aa95SBarry Smith       }
6426a9046bcSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)");
643aa05aa95SBarry Smith   }
6443a40ed3dSBarry Smith   PetscFunctionReturn(0);
6458965ea79SLois Curfman McInnes }
6468965ea79SLois Curfman McInnes 
6477da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
6489804daf3SBarry Smith #include <petscdraw.h>
6496849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6508965ea79SLois Curfman McInnes {
65139ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
652dfbe8321SBarry Smith   PetscErrorCode    ierr;
6537da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
65419fd82e9SBarry Smith   PetscViewerType   vtype;
655ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
656b0a32e0cSBarry Smith   PetscViewer       sviewer;
657f3ef73ceSBarry Smith   PetscViewerFormat format;
6588965ea79SLois Curfman McInnes 
6593a40ed3dSBarry Smith   PetscFunctionBegin;
660251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
661251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
66232077d6dSBarry Smith   if (iascii) {
663b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
664b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
665456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6664e220ebcSLois Curfman McInnes       MatInfo info;
667888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6681575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6697b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
670b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6711575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
6725d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6733a40ed3dSBarry Smith       PetscFunctionReturn(0);
674fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6753a40ed3dSBarry Smith       PetscFunctionReturn(0);
6768965ea79SLois Curfman McInnes     }
677f1af5d2fSBarry Smith   } else if (isdraw) {
678b0a32e0cSBarry Smith     PetscDraw draw;
679ace3abfcSBarry Smith     PetscBool isnull;
680f1af5d2fSBarry Smith 
681b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
682b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
683f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
684f1af5d2fSBarry Smith   }
68577ed5343SBarry Smith 
6867da1fb6eSBarry Smith   {
6878965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6888965ea79SLois Curfman McInnes     Mat         A;
689d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
690ba8c8a56SBarry Smith     PetscInt    *cols;
691ba8c8a56SBarry Smith     PetscScalar *vals;
6928965ea79SLois Curfman McInnes 
693ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6948965ea79SLois Curfman McInnes     if (!rank) {
695f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6963a40ed3dSBarry Smith     } else {
697f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6988965ea79SLois Curfman McInnes     }
6997adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
700878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
7010298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7023bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7038965ea79SLois Curfman McInnes 
70439ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
70539ddd567SLois Curfman McInnes        but it's quick for now */
70651022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7072205254eSKarl Rupp 
7082205254eSKarl Rupp     row = mat->rmap->rstart;
7092205254eSKarl Rupp     m   = mdn->A->rmap->n;
7108965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
711ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
712ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
713ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
71439ddd567SLois Curfman McInnes       row++;
7158965ea79SLois Curfman McInnes     }
7168965ea79SLois Curfman McInnes 
7176d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7186d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7193f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
720b9b97703SBarry Smith     if (!rank) {
7211a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7227da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7238965ea79SLois Curfman McInnes     }
7243f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
725b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7266bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7278965ea79SLois Curfman McInnes   }
7283a40ed3dSBarry Smith   PetscFunctionReturn(0);
7298965ea79SLois Curfman McInnes }
7308965ea79SLois Curfman McInnes 
731dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7328965ea79SLois Curfman McInnes {
733dfbe8321SBarry Smith   PetscErrorCode ierr;
734ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7358965ea79SLois Curfman McInnes 
736433994e6SBarry Smith   PetscFunctionBegin;
737251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
739251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
740251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7410f5bd95cSBarry Smith 
74232077d6dSBarry Smith   if (iascii || issocket || isdraw) {
743f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7440f5bd95cSBarry Smith   } else if (isbinary) {
7453a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
74611aeaf0aSBarry Smith   }
7473a40ed3dSBarry Smith   PetscFunctionReturn(0);
7488965ea79SLois Curfman McInnes }
7498965ea79SLois Curfman McInnes 
750dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7518965ea79SLois Curfman McInnes {
7523501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7533501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
754dfbe8321SBarry Smith   PetscErrorCode ierr;
755329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7568965ea79SLois Curfman McInnes 
7573a40ed3dSBarry Smith   PetscFunctionBegin;
7584e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7592205254eSKarl Rupp 
7604e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7612205254eSKarl Rupp 
7624e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7634e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7648965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7654e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7664e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7674e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7684e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7694e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7708965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
771b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7722205254eSKarl Rupp 
7734e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7744e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7754e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7764e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7774e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7788965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
779b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7802205254eSKarl Rupp 
7814e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7824e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7834e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7844e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7854e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7868965ea79SLois Curfman McInnes   }
7874e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7884e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7894e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7903a40ed3dSBarry Smith   PetscFunctionReturn(0);
7918965ea79SLois Curfman McInnes }
7928965ea79SLois Curfman McInnes 
793ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7948965ea79SLois Curfman McInnes {
79539ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
796dfbe8321SBarry Smith   PetscErrorCode ierr;
7978965ea79SLois Curfman McInnes 
7983a40ed3dSBarry Smith   PetscFunctionBegin;
79912c028f9SKris Buschelman   switch (op) {
800512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
80112c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
80212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
80343674050SBarry Smith     MatCheckPreallocated(A,1);
8044e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
80512c028f9SKris Buschelman     break;
80612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
80743674050SBarry Smith     MatCheckPreallocated(A,1);
8084e0d8c25SBarry Smith     a->roworiented = flg;
8094e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
81012c028f9SKris Buschelman     break;
8114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
81213fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
81312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
814290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
81512c028f9SKris Buschelman     break;
81612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8174e0d8c25SBarry Smith     a->donotstash = flg;
81812c028f9SKris Buschelman     break;
81977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
82077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8219a4540c5SBarry Smith   case MAT_HERMITIAN:
8229a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
823600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
824290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82577e54ba9SKris Buschelman     break;
82612c028f9SKris Buschelman   default:
827e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8283a40ed3dSBarry Smith   }
8293a40ed3dSBarry Smith   PetscFunctionReturn(0);
8308965ea79SLois Curfman McInnes }
8318965ea79SLois Curfman McInnes 
8328965ea79SLois Curfman McInnes 
833dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8345b2fa520SLois Curfman McInnes {
8355b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
8365b2fa520SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)mdn->A->data;
837bca11509SBarry Smith   const PetscScalar *l,*r;
838bca11509SBarry Smith   PetscScalar       x,*v;
839dfbe8321SBarry Smith   PetscErrorCode    ierr;
840d0f46423SBarry Smith   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8415b2fa520SLois Curfman McInnes 
8425b2fa520SLois Curfman McInnes   PetscFunctionBegin;
84372d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8445b2fa520SLois Curfman McInnes   if (ll) {
84572d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
846e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
847bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8485b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8495b2fa520SLois Curfman McInnes       x = l[i];
8505b2fa520SLois Curfman McInnes       v = mat->v + i;
8515b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8525b2fa520SLois Curfman McInnes     }
853bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
854efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8555b2fa520SLois Curfman McInnes   }
8565b2fa520SLois Curfman McInnes   if (rr) {
857175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
858e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
859ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861bca11509SBarry Smith     ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
8625b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8635b2fa520SLois Curfman McInnes       x = r[i];
8645b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8652205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8665b2fa520SLois Curfman McInnes     }
867bca11509SBarry Smith     ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
868efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8695b2fa520SLois Curfman McInnes   }
8705b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8715b2fa520SLois Curfman McInnes }
8725b2fa520SLois Curfman McInnes 
873dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
874096963f5SLois Curfman McInnes {
8753501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8763501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
877dfbe8321SBarry Smith   PetscErrorCode ierr;
87813f74950SBarry Smith   PetscInt       i,j;
879329f5518SBarry Smith   PetscReal      sum = 0.0;
88087828ca2SBarry Smith   PetscScalar    *v  = mat->v;
8813501a2bdSLois Curfman McInnes 
8823a40ed3dSBarry Smith   PetscFunctionBegin;
8833501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
884064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8853501a2bdSLois Curfman McInnes   } else {
8863501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
887d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
888329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8893501a2bdSLois Curfman McInnes       }
890b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8918f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
892dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8933a40ed3dSBarry Smith     } else if (type == NORM_1) {
894329f5518SBarry Smith       PetscReal *tmp,*tmp2;
895dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
89674ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
89774ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
898064f8208SBarry Smith       *nrm = 0.0;
8993501a2bdSLois Curfman McInnes       v    = mat->v;
900d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
901d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
90267e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9033501a2bdSLois Curfman McInnes         }
9043501a2bdSLois Curfman McInnes       }
905b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
906d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
907064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9083501a2bdSLois Curfman McInnes       }
9098627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
910d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9113a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
912329f5518SBarry Smith       PetscReal ntemp;
9133501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
914b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
915ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9163501a2bdSLois Curfman McInnes   }
9173a40ed3dSBarry Smith   PetscFunctionReturn(0);
9183501a2bdSLois Curfman McInnes }
9193501a2bdSLois Curfman McInnes 
920fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9213501a2bdSLois Curfman McInnes {
9223501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9233501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9243501a2bdSLois Curfman McInnes   Mat            B;
925d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9266849ba73SBarry Smith   PetscErrorCode ierr;
92713f74950SBarry Smith   PetscInt       j,i;
92887828ca2SBarry Smith   PetscScalar    *v;
9293501a2bdSLois Curfman McInnes 
9303a40ed3dSBarry Smith   PetscFunctionBegin;
931cf37664fSBarry Smith   if (reuse == MAT_INPLACE_MATRIX  && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place");
932cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
933ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
934d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9357adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9360298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
937fc4dec0aSBarry Smith   } else {
938fc4dec0aSBarry Smith     B = *matout;
939fc4dec0aSBarry Smith   }
9403501a2bdSLois Curfman McInnes 
941d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
942785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9433501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9441acff37aSSatish Balay   for (j=0; j<n; j++) {
9453501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9463501a2bdSLois Curfman McInnes     v   += m;
9473501a2bdSLois Curfman McInnes   }
948606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9496d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9506d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
951cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9523501a2bdSLois Curfman McInnes     *matout = B;
9533501a2bdSLois Curfman McInnes   } else {
95428be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9553501a2bdSLois Curfman McInnes   }
9563a40ed3dSBarry Smith   PetscFunctionReturn(0);
957096963f5SLois Curfman McInnes }
958096963f5SLois Curfman McInnes 
95944cd7ae7SLois Curfman McInnes 
9606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
961d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9628965ea79SLois Curfman McInnes 
9634994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
964273d9f13SBarry Smith {
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966273d9f13SBarry Smith 
967273d9f13SBarry Smith   PetscFunctionBegin;
968273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
969273d9f13SBarry Smith   PetscFunctionReturn(0);
970273d9f13SBarry Smith }
971273d9f13SBarry Smith 
972488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
973488007eeSBarry Smith {
974488007eeSBarry Smith   PetscErrorCode ierr;
975488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
976488007eeSBarry Smith 
977488007eeSBarry Smith   PetscFunctionBegin;
978488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
979a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
980488007eeSBarry Smith   PetscFunctionReturn(0);
981488007eeSBarry Smith }
982488007eeSBarry Smith 
9837087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
984ba337c44SJed Brown {
985ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
986ba337c44SJed Brown   PetscErrorCode ierr;
987ba337c44SJed Brown 
988ba337c44SJed Brown   PetscFunctionBegin;
989ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
990ba337c44SJed Brown   PetscFunctionReturn(0);
991ba337c44SJed Brown }
992ba337c44SJed Brown 
993ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
994ba337c44SJed Brown {
995ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
996ba337c44SJed Brown   PetscErrorCode ierr;
997ba337c44SJed Brown 
998ba337c44SJed Brown   PetscFunctionBegin;
999ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1000ba337c44SJed Brown   PetscFunctionReturn(0);
1001ba337c44SJed Brown }
1002ba337c44SJed Brown 
1003ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1004ba337c44SJed Brown {
1005ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1006ba337c44SJed Brown   PetscErrorCode ierr;
1007ba337c44SJed Brown 
1008ba337c44SJed Brown   PetscFunctionBegin;
1009ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1010ba337c44SJed Brown   PetscFunctionReturn(0);
1011ba337c44SJed Brown }
1012ba337c44SJed Brown 
10130716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10140716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10150716a85fSBarry Smith {
10160716a85fSBarry Smith   PetscErrorCode ierr;
10170716a85fSBarry Smith   PetscInt       i,n;
10180716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10190716a85fSBarry Smith   PetscReal      *work;
10200716a85fSBarry Smith 
10210716a85fSBarry Smith   PetscFunctionBegin;
10220298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1023785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10240716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10250716a85fSBarry Smith   if (type == NORM_2) {
10260716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10270716a85fSBarry Smith   }
10280716a85fSBarry Smith   if (type == NORM_INFINITY) {
1029b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10300716a85fSBarry Smith   } else {
1031b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10320716a85fSBarry Smith   }
10330716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10340716a85fSBarry Smith   if (type == NORM_2) {
10358f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10360716a85fSBarry Smith   }
10370716a85fSBarry Smith   PetscFunctionReturn(0);
10380716a85fSBarry Smith }
10390716a85fSBarry Smith 
104073a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
104173a71a0fSBarry Smith {
104273a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
104373a71a0fSBarry Smith   PetscErrorCode ierr;
104473a71a0fSBarry Smith   PetscScalar    *a;
104573a71a0fSBarry Smith   PetscInt       m,n,i;
104673a71a0fSBarry Smith 
104773a71a0fSBarry Smith   PetscFunctionBegin;
104873a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
10498c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
105073a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
105173a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
105273a71a0fSBarry Smith   }
10538c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
105473a71a0fSBarry Smith   PetscFunctionReturn(0);
105573a71a0fSBarry Smith }
105673a71a0fSBarry Smith 
1057fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1058fd4e9aacSBarry Smith 
10593b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
10603b49f96aSBarry Smith {
10613b49f96aSBarry Smith   PetscFunctionBegin;
10623b49f96aSBarry Smith   *missing = PETSC_FALSE;
10633b49f96aSBarry Smith   PetscFunctionReturn(0);
10643b49f96aSBarry Smith }
10653b49f96aSBarry Smith 
10668965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
106709dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
106809dc0095SBarry Smith                                         MatGetRow_MPIDense,
106909dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
107009dc0095SBarry Smith                                         MatMult_MPIDense,
107197304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10727c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
10737c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
10748965ea79SLois Curfman McInnes                                         0,
107509dc0095SBarry Smith                                         0,
107609dc0095SBarry Smith                                         0,
107797304618SKris Buschelman                                 /* 10*/ 0,
107809dc0095SBarry Smith                                         0,
107909dc0095SBarry Smith                                         0,
108009dc0095SBarry Smith                                         0,
108109dc0095SBarry Smith                                         MatTranspose_MPIDense,
108297304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
10836e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
108409dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
10855b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
108609dc0095SBarry Smith                                         MatNorm_MPIDense,
108797304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
108809dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
108909dc0095SBarry Smith                                         MatSetOption_MPIDense,
109009dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1091d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1092919b68f7SBarry Smith                                         0,
109301b82886SBarry Smith                                         0,
109401b82886SBarry Smith                                         0,
109501b82886SBarry Smith                                         0,
10964994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1097273d9f13SBarry Smith                                         0,
109809dc0095SBarry Smith                                         0,
1099c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
11008c778c55SBarry Smith                                         0,
1101d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
110209dc0095SBarry Smith                                         0,
110309dc0095SBarry Smith                                         0,
110409dc0095SBarry Smith                                         0,
110509dc0095SBarry Smith                                         0,
1106d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11077dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
110809dc0095SBarry Smith                                         0,
110909dc0095SBarry Smith                                         MatGetValues_MPIDense,
111009dc0095SBarry Smith                                         0,
1111d519adbfSMatthew Knepley                                 /* 44*/ 0,
111209dc0095SBarry Smith                                         MatScale_MPIDense,
11137d68702bSBarry Smith                                         MatShift_Basic,
111409dc0095SBarry Smith                                         0,
111509dc0095SBarry Smith                                         0,
111673a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
111709dc0095SBarry Smith                                         0,
111809dc0095SBarry Smith                                         0,
111909dc0095SBarry Smith                                         0,
112009dc0095SBarry Smith                                         0,
1121d519adbfSMatthew Knepley                                 /* 54*/ 0,
112209dc0095SBarry Smith                                         0,
112309dc0095SBarry Smith                                         0,
112409dc0095SBarry Smith                                         0,
112509dc0095SBarry Smith                                         0,
11267dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1127b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1128b9b97703SBarry Smith                                         MatView_MPIDense,
1129357abbc8SBarry Smith                                         0,
113097304618SKris Buschelman                                         0,
1131d519adbfSMatthew Knepley                                 /* 64*/ 0,
113297304618SKris Buschelman                                         0,
113397304618SKris Buschelman                                         0,
113497304618SKris Buschelman                                         0,
113597304618SKris Buschelman                                         0,
1136d519adbfSMatthew Knepley                                 /* 69*/ 0,
113797304618SKris Buschelman                                         0,
113897304618SKris Buschelman                                         0,
113997304618SKris Buschelman                                         0,
114097304618SKris Buschelman                                         0,
1141d519adbfSMatthew Knepley                                 /* 74*/ 0,
114297304618SKris Buschelman                                         0,
114397304618SKris Buschelman                                         0,
114497304618SKris Buschelman                                         0,
114597304618SKris Buschelman                                         0,
1146d519adbfSMatthew Knepley                                 /* 79*/ 0,
114797304618SKris Buschelman                                         0,
114897304618SKris Buschelman                                         0,
114997304618SKris Buschelman                                         0,
11505bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1151865e5f61SKris Buschelman                                         0,
1152865e5f61SKris Buschelman                                         0,
1153865e5f61SKris Buschelman                                         0,
1154865e5f61SKris Buschelman                                         0,
1155865e5f61SKris Buschelman                                         0,
11569775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1157320f2790SHong Zhang                                 /* 89*/ MatMatMult_MPIDense_MPIDense,
1158320f2790SHong Zhang                                         MatMatMultSymbolic_MPIDense_MPIDense,
11599775878aSHong Zhang #else
11609775878aSHong Zhang                                 /* 89*/ 0,
1161865e5f61SKris Buschelman                                         0,
11629775878aSHong Zhang #endif
1163fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
11642fbe02b9SBarry Smith                                         0,
1165ba337c44SJed Brown                                         0,
1166d519adbfSMatthew Knepley                                 /* 94*/ 0,
1167865e5f61SKris Buschelman                                         0,
1168865e5f61SKris Buschelman                                         0,
1169ba337c44SJed Brown                                         0,
1170ba337c44SJed Brown                                         0,
1171ba337c44SJed Brown                                 /* 99*/ 0,
1172ba337c44SJed Brown                                         0,
1173ba337c44SJed Brown                                         0,
1174ba337c44SJed Brown                                         MatConjugate_MPIDense,
1175ba337c44SJed Brown                                         0,
1176ba337c44SJed Brown                                 /*104*/ 0,
1177ba337c44SJed Brown                                         MatRealPart_MPIDense,
1178ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
117986d161a7SShri Abhyankar                                         0,
118086d161a7SShri Abhyankar                                         0,
118186d161a7SShri Abhyankar                                 /*109*/ 0,
118286d161a7SShri Abhyankar                                         0,
118386d161a7SShri Abhyankar                                         0,
118486d161a7SShri Abhyankar                                         0,
11853b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
118686d161a7SShri Abhyankar                                 /*114*/ 0,
118786d161a7SShri Abhyankar                                         0,
118886d161a7SShri Abhyankar                                         0,
118986d161a7SShri Abhyankar                                         0,
119086d161a7SShri Abhyankar                                         0,
119186d161a7SShri Abhyankar                                 /*119*/ 0,
119286d161a7SShri Abhyankar                                         0,
119386d161a7SShri Abhyankar                                         0,
11940716a85fSBarry Smith                                         0,
11950716a85fSBarry Smith                                         0,
11960716a85fSBarry Smith                                 /*124*/ 0,
11973964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
11983964eb88SJed Brown                                         0,
11993964eb88SJed Brown                                         0,
12003964eb88SJed Brown                                         0,
12013964eb88SJed Brown                                 /*129*/ 0,
1202cb20be35SHong Zhang                                         MatTransposeMatMult_MPIDense_MPIDense,
1203cb20be35SHong Zhang                                         MatTransposeMatMultSymbolic_MPIDense_MPIDense,
1204cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
12053964eb88SJed Brown                                         0,
12063964eb88SJed Brown                                 /*134*/ 0,
12073964eb88SJed Brown                                         0,
12083964eb88SJed Brown                                         0,
12093964eb88SJed Brown                                         0,
12103964eb88SJed Brown                                         0,
12113964eb88SJed Brown                                 /*139*/ 0,
1212f9426fe0SMark Adams                                         0,
12133964eb88SJed Brown                                         0
1214ba337c44SJed Brown };
12158965ea79SLois Curfman McInnes 
12167087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1217a23d5eceSKris Buschelman {
1218a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1219dfbe8321SBarry Smith   PetscErrorCode ierr;
1220a23d5eceSKris Buschelman 
1221a23d5eceSKris Buschelman   PetscFunctionBegin;
1222a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1223a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1224a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1225a23d5eceSKris Buschelman 
1226a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
122734ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
122834ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
122934ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
123034ef9618SShri Abhyankar 
1231f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1232d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12335c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12345c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1236a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1237a23d5eceSKris Buschelman }
1238a23d5eceSKris Buschelman 
123965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1240cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
12418baccfbdSHong Zhang {
12428ea901baSHong Zhang   Mat            mat_elemental;
12438ea901baSHong Zhang   PetscErrorCode ierr;
124432d7a744SHong Zhang   PetscScalar    *v;
124532d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
12468ea901baSHong Zhang 
12478baccfbdSHong Zhang   PetscFunctionBegin;
1248378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1249378336b6SHong Zhang     mat_elemental = *newmat;
1250378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1251378336b6SHong Zhang   } else {
1252378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1253378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1254378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1255378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
125632d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1257378336b6SHong Zhang   }
1258378336b6SHong Zhang 
125932d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
126032d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
126132d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
12628ea901baSHong Zhang 
12638ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
126432d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
126532d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
12668ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12678ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
126832d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
126932d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
12708ea901baSHong Zhang 
1271511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
127228be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
12738ea901baSHong Zhang   } else {
12748ea901baSHong Zhang     *newmat = mat_elemental;
12758ea901baSHong Zhang   }
12768baccfbdSHong Zhang   PetscFunctionReturn(0);
12778baccfbdSHong Zhang }
127865b80a83SHong Zhang #endif
12798baccfbdSHong Zhang 
1280*af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
128186aefd0dSHong Zhang {
128286aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
128386aefd0dSHong Zhang   PetscErrorCode ierr;
128486aefd0dSHong Zhang 
128586aefd0dSHong Zhang   PetscFunctionBegin;
128686aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
128786aefd0dSHong Zhang   PetscFunctionReturn(0);
128886aefd0dSHong Zhang }
128986aefd0dSHong Zhang 
1290*af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
129186aefd0dSHong Zhang {
129286aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
129386aefd0dSHong Zhang   PetscErrorCode ierr;
129486aefd0dSHong Zhang 
129586aefd0dSHong Zhang   PetscFunctionBegin;
129686aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
129786aefd0dSHong Zhang   PetscFunctionReturn(0);
129886aefd0dSHong Zhang }
129986aefd0dSHong Zhang 
13008cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1301273d9f13SBarry Smith {
1302273d9f13SBarry Smith   Mat_MPIDense   *a;
1303dfbe8321SBarry Smith   PetscErrorCode ierr;
1304273d9f13SBarry Smith 
1305273d9f13SBarry Smith   PetscFunctionBegin;
1306b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1307b0a32e0cSBarry Smith   mat->data = (void*)a;
1308273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1309273d9f13SBarry Smith 
1310273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1311ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1312ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1313273d9f13SBarry Smith 
1314273d9f13SBarry Smith   /* build cache for off array entries formed */
1315273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
13162205254eSKarl Rupp 
1317ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1318273d9f13SBarry Smith 
1319273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1320273d9f13SBarry Smith   a->lvec        = 0;
1321273d9f13SBarry Smith   a->Mvctx       = 0;
1322273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1323273d9f13SBarry Smith 
1324bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
1325d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1326d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
1327bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
13288baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
13298baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
13308baccfbdSHong Zhang #endif
1331bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1332bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1333bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1334bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
13358949adfdSHong Zhang 
13368949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
13378949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
13388949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1339*af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1340*af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
134138aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1342273d9f13SBarry Smith   PetscFunctionReturn(0);
1343273d9f13SBarry Smith }
1344273d9f13SBarry Smith 
1345209238afSKris Buschelman /*MC
1346002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1347209238afSKris Buschelman 
1348209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1349209238afSKris Buschelman    and MATMPIDENSE otherwise.
1350209238afSKris Buschelman 
1351209238afSKris Buschelman    Options Database Keys:
1352209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1353209238afSKris Buschelman 
1354209238afSKris Buschelman   Level: beginner
1355209238afSKris Buschelman 
135601b82886SBarry Smith 
1357209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1358209238afSKris Buschelman M*/
1359209238afSKris Buschelman 
1360273d9f13SBarry Smith /*@C
1361273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1362273d9f13SBarry Smith 
1363273d9f13SBarry Smith    Not collective
1364273d9f13SBarry Smith 
1365273d9f13SBarry Smith    Input Parameters:
13661c4f3114SJed Brown .  B - the matrix
13670298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1368273d9f13SBarry Smith    to control all matrix memory allocation.
1369273d9f13SBarry Smith 
1370273d9f13SBarry Smith    Notes:
1371273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1372273d9f13SBarry Smith    storage by columns.
1373273d9f13SBarry Smith 
1374273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1375273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
13760298fd71SBarry Smith    set data=NULL.
1377273d9f13SBarry Smith 
1378273d9f13SBarry Smith    Level: intermediate
1379273d9f13SBarry Smith 
1380273d9f13SBarry Smith .keywords: matrix,dense, parallel
1381273d9f13SBarry Smith 
1382273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1383273d9f13SBarry Smith @*/
13841c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1385273d9f13SBarry Smith {
13864ac538c5SBarry Smith   PetscErrorCode ierr;
1387273d9f13SBarry Smith 
1388273d9f13SBarry Smith   PetscFunctionBegin;
13891c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1390273d9f13SBarry Smith   PetscFunctionReturn(0);
1391273d9f13SBarry Smith }
1392273d9f13SBarry Smith 
1393d3042a70SBarry Smith /*@
1394d3042a70SBarry Smith    MatDensePlaceArray - Allows one to replace the array in a dense array with an
1395d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1396d3042a70SBarry Smith    into a matrix
1397d3042a70SBarry Smith 
1398d3042a70SBarry Smith    Not Collective
1399d3042a70SBarry Smith 
1400d3042a70SBarry Smith    Input Parameters:
1401d3042a70SBarry Smith +  mat - the matrix
1402d3042a70SBarry Smith -  array - the array in column major order
1403d3042a70SBarry Smith 
1404d3042a70SBarry Smith    Notes:
1405d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1406d3042a70SBarry Smith    freed when the matrix is destroyed.
1407d3042a70SBarry Smith 
1408d3042a70SBarry Smith    Level: developer
1409d3042a70SBarry Smith 
1410d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1411d3042a70SBarry Smith 
1412d3042a70SBarry Smith @*/
1413d3042a70SBarry Smith PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar array[])
1414d3042a70SBarry Smith {
1415d3042a70SBarry Smith   PetscErrorCode ierr;
1416d3042a70SBarry Smith   PetscFunctionBegin;
1417d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1418d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1419d3042a70SBarry Smith   PetscFunctionReturn(0);
1420d3042a70SBarry Smith }
1421d3042a70SBarry Smith 
1422d3042a70SBarry Smith /*@
1423d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1424d3042a70SBarry Smith 
1425d3042a70SBarry Smith    Not Collective
1426d3042a70SBarry Smith 
1427d3042a70SBarry Smith    Input Parameters:
1428d3042a70SBarry Smith .  mat - the matrix
1429d3042a70SBarry Smith 
1430d3042a70SBarry Smith    Notes:
1431d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1432d3042a70SBarry Smith 
1433d3042a70SBarry Smith    Level: developer
1434d3042a70SBarry Smith 
1435d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1436d3042a70SBarry Smith 
1437d3042a70SBarry Smith @*/
1438d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1439d3042a70SBarry Smith {
1440d3042a70SBarry Smith   PetscErrorCode ierr;
1441d3042a70SBarry Smith   PetscFunctionBegin;
1442d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1443d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1444d3042a70SBarry Smith   PetscFunctionReturn(0);
1445d3042a70SBarry Smith }
1446d3042a70SBarry Smith 
14478965ea79SLois Curfman McInnes /*@C
144869b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
14498965ea79SLois Curfman McInnes 
1450db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1451db81eaa0SLois Curfman McInnes 
14528965ea79SLois Curfman McInnes    Input Parameters:
1453db81eaa0SLois Curfman McInnes +  comm - MPI communicator
14548965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1455db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
14568965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1457db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
14586cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1459dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
14608965ea79SLois Curfman McInnes 
14618965ea79SLois Curfman McInnes    Output Parameter:
1462477f1c0bSLois Curfman McInnes .  A - the matrix
14638965ea79SLois Curfman McInnes 
1464b259b22eSLois Curfman McInnes    Notes:
146539ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
146639ddd567SLois Curfman McInnes    storage by columns.
14678965ea79SLois Curfman McInnes 
146818f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
146918f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
14706cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
147118f449edSLois Curfman McInnes 
14728965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
14738965ea79SLois Curfman McInnes    (possibly both).
14748965ea79SLois Curfman McInnes 
1475027ccd11SLois Curfman McInnes    Level: intermediate
1476027ccd11SLois Curfman McInnes 
147739ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
14788965ea79SLois Curfman McInnes 
147939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
14808965ea79SLois Curfman McInnes @*/
148169b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
14828965ea79SLois Curfman McInnes {
14836849ba73SBarry Smith   PetscErrorCode ierr;
148413f74950SBarry Smith   PetscMPIInt    size;
14858965ea79SLois Curfman McInnes 
14863a40ed3dSBarry Smith   PetscFunctionBegin;
1487f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1488f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1489273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1490273d9f13SBarry Smith   if (size > 1) {
1491273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1492273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
14936cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
14946cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
14956cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
14966cfe35ddSJose E. Roman     }
1497273d9f13SBarry Smith   } else {
1498273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1499273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15008c469469SLois Curfman McInnes   }
15013a40ed3dSBarry Smith   PetscFunctionReturn(0);
15028965ea79SLois Curfman McInnes }
15038965ea79SLois Curfman McInnes 
15046849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
15058965ea79SLois Curfman McInnes {
15068965ea79SLois Curfman McInnes   Mat            mat;
15073501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1508dfbe8321SBarry Smith   PetscErrorCode ierr;
15098965ea79SLois Curfman McInnes 
15103a40ed3dSBarry Smith   PetscFunctionBegin;
15118965ea79SLois Curfman McInnes   *newmat = 0;
1512ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1513d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
15147adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1515834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
1516e04c1aa4SHong Zhang   ierr    = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
15175aa7edbeSHong Zhang 
1518d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1519c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1520273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
15218965ea79SLois Curfman McInnes 
15228965ea79SLois Curfman McInnes   a->size         = oldmat->size;
15238965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1524e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1525b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
15263782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1527e04c1aa4SHong Zhang 
15281e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
15291e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
15308965ea79SLois Curfman McInnes 
1531329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
15325609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
15333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
153401b82886SBarry Smith 
15358965ea79SLois Curfman McInnes   *newmat = mat;
15363a40ed3dSBarry Smith   PetscFunctionReturn(0);
15378965ea79SLois Curfman McInnes }
15388965ea79SLois Curfman McInnes 
15399d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat)
154086d161a7SShri Abhyankar {
154186d161a7SShri Abhyankar   PetscErrorCode ierr;
154286d161a7SShri Abhyankar   PetscMPIInt    rank,size;
154374c13d95SBarry Smith   const PetscInt *rowners;
154474c13d95SBarry Smith   PetscInt       i,m,n,nz,j,mMax;
154586d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
15469d36ed5fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)newmat->data;
154786d161a7SShri Abhyankar 
154886d161a7SShri Abhyankar   PetscFunctionBegin;
154986d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
155086d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
155186d161a7SShri Abhyankar 
155274c13d95SBarry Smith   /* determine ownership of rows and columns */
155374c13d95SBarry Smith   m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n;
155474c13d95SBarry Smith   n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n;
155586d161a7SShri Abhyankar 
155674c13d95SBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
15579d36ed5fSBarry Smith   if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) {
15580298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
15599d36ed5fSBarry Smith   }
15608c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
156149467e7dSBarry Smith   ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr);
156274c13d95SBarry Smith   ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr);
1563396e826eSBarry Smith   ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr);
156486d161a7SShri Abhyankar   if (!rank) {
15659d36ed5fSBarry Smith     ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr);
156686d161a7SShri Abhyankar 
156786d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
156886d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
156986d161a7SShri Abhyankar 
157086d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
157186d161a7SShri Abhyankar     vals_ptr = vals;
157286d161a7SShri Abhyankar     for (i=0; i<m; i++) {
157386d161a7SShri Abhyankar       for (j=0; j<N; j++) {
157486d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
157586d161a7SShri Abhyankar       }
157686d161a7SShri Abhyankar     }
157786d161a7SShri Abhyankar 
157886d161a7SShri Abhyankar     /* read in other processors and ship out */
157986d161a7SShri Abhyankar     for (i=1; i<size; i++) {
158086d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
158186d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1582a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
158386d161a7SShri Abhyankar     }
158486d161a7SShri Abhyankar   } else {
158586d161a7SShri Abhyankar     /* receive numeric values */
1586785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
158786d161a7SShri Abhyankar 
158886d161a7SShri Abhyankar     /* receive message of values*/
1589a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
159086d161a7SShri Abhyankar 
159186d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
159286d161a7SShri Abhyankar     vals_ptr = vals;
159386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
159486d161a7SShri Abhyankar       for (j=0; j<N; j++) {
159586d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
159686d161a7SShri Abhyankar       }
159786d161a7SShri Abhyankar     }
159886d161a7SShri Abhyankar   }
15998c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
160086d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
160186d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
160286d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
160386d161a7SShri Abhyankar   PetscFunctionReturn(0);
160486d161a7SShri Abhyankar }
160586d161a7SShri Abhyankar 
1606112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
160786d161a7SShri Abhyankar {
1608dfdea288SBarry Smith   Mat_MPIDense   *a;
160986d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1610ce94432eSBarry Smith   MPI_Comm       comm;
161186d161a7SShri Abhyankar   MPI_Status     status;
161249467e7dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz;
161386d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
161449467e7dSBarry Smith   PetscInt       *ourlens,*procsnz = 0,jj,*mycols,*smycols;
16159d36ed5fSBarry Smith   PetscInt       i,nz,j,rstart,rend;
161686d161a7SShri Abhyankar   int            fd;
161786d161a7SShri Abhyankar   PetscErrorCode ierr;
161886d161a7SShri Abhyankar 
161986d161a7SShri Abhyankar   PetscFunctionBegin;
1620c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1621c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1622ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
162386d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
162486d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
162586d161a7SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
16265872f025SBarry Smith   if (!rank) {
162786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
162886d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
162986d161a7SShri Abhyankar   }
163086d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
163186d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
163286d161a7SShri Abhyankar 
163386d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
16349d36ed5fSBarry Smith   if (newmat->rmap->N < 0) newmat->rmap->N = M;
16359d36ed5fSBarry Smith   if (newmat->cmap->N < 0) newmat->cmap->N = N;
163686d161a7SShri Abhyankar 
16379d36ed5fSBarry Smith   if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N);
16389d36ed5fSBarry Smith   if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N);
163986d161a7SShri Abhyankar 
164086d161a7SShri Abhyankar   /*
164186d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
164286d161a7SShri Abhyankar   */
164386d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
16449d36ed5fSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
164586d161a7SShri Abhyankar     PetscFunctionReturn(0);
164686d161a7SShri Abhyankar   }
164786d161a7SShri Abhyankar 
164886d161a7SShri Abhyankar   /* determine ownership of all rows */
16492205254eSKarl Rupp   if (newmat->rmap->n < 0) {
16502205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
16512205254eSKarl Rupp   } else {
16522205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
16532205254eSKarl Rupp   }
165449467e7dSBarry Smith   if (newmat->cmap->n < 0) {
165549467e7dSBarry Smith     n = PETSC_DECIDE;
165649467e7dSBarry Smith   } else {
165749467e7dSBarry Smith     ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr);
165849467e7dSBarry Smith   }
165949467e7dSBarry Smith 
1660854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
166186d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
166286d161a7SShri Abhyankar   rowners[0] = 0;
166386d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
166486d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
166586d161a7SShri Abhyankar   }
166686d161a7SShri Abhyankar   rstart = rowners[rank];
166786d161a7SShri Abhyankar   rend   = rowners[rank+1];
166886d161a7SShri Abhyankar 
166986d161a7SShri Abhyankar   /* distribute row lengths to all processors */
167049467e7dSBarry Smith   ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr);
167186d161a7SShri Abhyankar   if (!rank) {
1672785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
167386d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1674785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
167586d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
167686d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
167786d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
167886d161a7SShri Abhyankar   } else {
167986d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
168086d161a7SShri Abhyankar   }
168186d161a7SShri Abhyankar 
168286d161a7SShri Abhyankar   if (!rank) {
168386d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1684785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
168586d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
168686d161a7SShri Abhyankar     for (i=0; i<size; i++) {
168786d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
168886d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
168986d161a7SShri Abhyankar       }
169086d161a7SShri Abhyankar     }
169186d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
169286d161a7SShri Abhyankar 
169386d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
169486d161a7SShri Abhyankar     maxnz = 0;
169586d161a7SShri Abhyankar     for (i=0; i<size; i++) {
169686d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
169786d161a7SShri Abhyankar     }
1698785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
169986d161a7SShri Abhyankar 
170086d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
170186d161a7SShri Abhyankar     nz   = procsnz[0];
1702785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
170386d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
170486d161a7SShri Abhyankar 
170586d161a7SShri Abhyankar     /* read in every one elses and ship off */
170686d161a7SShri Abhyankar     for (i=1; i<size; i++) {
170786d161a7SShri Abhyankar       nz   = procsnz[i];
170886d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
170986d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
171086d161a7SShri Abhyankar     }
171186d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
171286d161a7SShri Abhyankar   } else {
171386d161a7SShri Abhyankar     /* determine buffer space needed for message */
171486d161a7SShri Abhyankar     nz = 0;
171586d161a7SShri Abhyankar     for (i=0; i<m; i++) {
171686d161a7SShri Abhyankar       nz += ourlens[i];
171786d161a7SShri Abhyankar     }
1718854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr);
171986d161a7SShri Abhyankar 
172086d161a7SShri Abhyankar     /* receive message of column indices*/
172186d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
172286d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
172386d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
172486d161a7SShri Abhyankar   }
172586d161a7SShri Abhyankar 
172649467e7dSBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1727dfdea288SBarry Smith   a = (Mat_MPIDense*)newmat->data;
17282e3566b0SBarry Smith   if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) {
17290298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1730dfdea288SBarry Smith   }
173186d161a7SShri Abhyankar 
173286d161a7SShri Abhyankar   if (!rank) {
1733785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
173486d161a7SShri Abhyankar 
173586d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
173686d161a7SShri Abhyankar     nz   = procsnz[0];
173786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
173886d161a7SShri Abhyankar 
173986d161a7SShri Abhyankar     /* insert into matrix */
174086d161a7SShri Abhyankar     jj      = rstart;
174186d161a7SShri Abhyankar     smycols = mycols;
174286d161a7SShri Abhyankar     svals   = vals;
174386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
174486d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
174586d161a7SShri Abhyankar       smycols += ourlens[i];
174686d161a7SShri Abhyankar       svals   += ourlens[i];
174786d161a7SShri Abhyankar       jj++;
174886d161a7SShri Abhyankar     }
174986d161a7SShri Abhyankar 
175086d161a7SShri Abhyankar     /* read in other processors and ship out */
175186d161a7SShri Abhyankar     for (i=1; i<size; i++) {
175286d161a7SShri Abhyankar       nz   = procsnz[i];
175386d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
175486d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
175586d161a7SShri Abhyankar     }
175686d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
175786d161a7SShri Abhyankar   } else {
175886d161a7SShri Abhyankar     /* receive numeric values */
1759854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr);
176086d161a7SShri Abhyankar 
176186d161a7SShri Abhyankar     /* receive message of values*/
176286d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
176386d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
176486d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
176586d161a7SShri Abhyankar 
176686d161a7SShri Abhyankar     /* insert into matrix */
176786d161a7SShri Abhyankar     jj      = rstart;
176886d161a7SShri Abhyankar     smycols = mycols;
176986d161a7SShri Abhyankar     svals   = vals;
177086d161a7SShri Abhyankar     for (i=0; i<m; i++) {
177186d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
177286d161a7SShri Abhyankar       smycols += ourlens[i];
177386d161a7SShri Abhyankar       svals   += ourlens[i];
177486d161a7SShri Abhyankar       jj++;
177586d161a7SShri Abhyankar     }
177686d161a7SShri Abhyankar   }
177749467e7dSBarry Smith   ierr = PetscFree(ourlens);CHKERRQ(ierr);
177886d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
177986d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
178086d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
178186d161a7SShri Abhyankar 
178286d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
178386d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
178486d161a7SShri Abhyankar   PetscFunctionReturn(0);
178586d161a7SShri Abhyankar }
178686d161a7SShri Abhyankar 
1787ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
17886e4ee0c6SHong Zhang {
17896e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
17906e4ee0c6SHong Zhang   Mat            a,b;
1791ace3abfcSBarry Smith   PetscBool      flg;
17926e4ee0c6SHong Zhang   PetscErrorCode ierr;
179390ace30eSBarry Smith 
17946e4ee0c6SHong Zhang   PetscFunctionBegin;
17956e4ee0c6SHong Zhang   a    = matA->A;
17966e4ee0c6SHong Zhang   b    = matB->A;
17976e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1798b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17996e4ee0c6SHong Zhang   PetscFunctionReturn(0);
18006e4ee0c6SHong Zhang }
180190ace30eSBarry Smith 
1802baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
1803baa3c1c6SHong Zhang {
1804baa3c1c6SHong Zhang   PetscErrorCode        ierr;
1805baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1806baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
1807baa3c1c6SHong Zhang 
1808baa3c1c6SHong Zhang   PetscFunctionBegin;
1809c5ef1628SHong Zhang   ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr);
1810baa3c1c6SHong Zhang   ierr = (atb->destroy)(A);CHKERRQ(ierr);
1811baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
1812baa3c1c6SHong Zhang   PetscFunctionReturn(0);
1813baa3c1c6SHong Zhang }
1814baa3c1c6SHong Zhang 
1815cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1816cb20be35SHong Zhang {
1817baa3c1c6SHong Zhang   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1818660d5466SHong Zhang   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1819baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
1820cb20be35SHong Zhang   PetscErrorCode ierr;
1821cb20be35SHong Zhang   MPI_Comm       comm;
1822d5017740SHong Zhang   PetscMPIInt    rank,size,*recvcounts=atb->recvcounts;
1823c5ef1628SHong Zhang   PetscScalar    *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf;
1824d5017740SHong Zhang   PetscInt       i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
1825660d5466SHong Zhang   PetscScalar    _DOne=1.0,_DZero=0.0;
1826adc7a786SHong Zhang   PetscBLASInt   am,an,bn,aN;
1827e68c0b26SHong Zhang   const PetscInt *ranges;
1828cb20be35SHong Zhang 
1829cb20be35SHong Zhang   PetscFunctionBegin;
1830cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1831cb20be35SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1832cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1833e68c0b26SHong Zhang 
1834c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
1835660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr);
1836660d5466SHong Zhang   ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr);
1837660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr);
1838adc7a786SHong Zhang   ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr);
1839adc7a786SHong Zhang   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN));
1840cb20be35SHong Zhang 
1841cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
1842c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
1843cb20be35SHong Zhang 
1844660d5466SHong Zhang   /* arrange atbarray into sendbuf */
1845cb20be35SHong Zhang   k = 0;
1846cb20be35SHong Zhang   for (proc=0; proc<size; proc++) {
1847baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
1848c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
1849cb20be35SHong Zhang     }
1850cb20be35SHong Zhang   }
1851c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
1852660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
18533462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
1854660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
1855cb20be35SHong Zhang   PetscFunctionReturn(0);
1856cb20be35SHong Zhang }
1857cb20be35SHong Zhang 
1858cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1859cb20be35SHong Zhang {
1860cb20be35SHong Zhang   PetscErrorCode        ierr;
1861baa3c1c6SHong Zhang   Mat                   Cdense;
1862cb20be35SHong Zhang   MPI_Comm              comm;
1863baa3c1c6SHong Zhang   PetscMPIInt           size;
1864660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
1865baa3c1c6SHong Zhang   Mat_MPIDense          *c;
1866baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
1867cb20be35SHong Zhang 
1868cb20be35SHong Zhang   PetscFunctionBegin;
1869baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1870cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
1871cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1872cb20be35SHong Zhang   }
1873cb20be35SHong Zhang 
1874baa3c1c6SHong Zhang   /* create matrix product Cdense */
1875baa3c1c6SHong Zhang   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
1876660d5466SHong Zhang   ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
1877baa3c1c6SHong Zhang   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
1878baa3c1c6SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
1879baa3c1c6SHong Zhang   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1880baa3c1c6SHong Zhang   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1881baa3c1c6SHong Zhang   *C   = Cdense;
1882baa3c1c6SHong Zhang 
1883baa3c1c6SHong Zhang   /* create data structure for reuse Cdense */
1884baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1885baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
1886660d5466SHong Zhang   cM = Cdense->rmap->N;
1887c5ef1628SHong Zhang   ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr);
1888baa3c1c6SHong Zhang 
1889baa3c1c6SHong Zhang   c                    = (Mat_MPIDense*)Cdense->data;
1890baa3c1c6SHong Zhang   c->atbdense          = atb;
1891baa3c1c6SHong Zhang   atb->destroy         = Cdense->ops->destroy;
1892baa3c1c6SHong Zhang   Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
1893cb20be35SHong Zhang   PetscFunctionReturn(0);
1894cb20be35SHong Zhang }
1895cb20be35SHong Zhang 
1896cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1897cb20be35SHong Zhang {
1898cb20be35SHong Zhang   PetscErrorCode ierr;
1899cb20be35SHong Zhang 
1900cb20be35SHong Zhang   PetscFunctionBegin;
1901cb20be35SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
1902cb20be35SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
1903cb20be35SHong Zhang   }
1904cb20be35SHong Zhang   ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
1905cb20be35SHong Zhang   PetscFunctionReturn(0);
1906cb20be35SHong Zhang }
1907320f2790SHong Zhang 
1908320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
1909320f2790SHong Zhang {
1910320f2790SHong Zhang   PetscErrorCode   ierr;
1911320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
1912320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
1913320f2790SHong Zhang 
1914320f2790SHong Zhang   PetscFunctionBegin;
1915320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
1916320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
1917320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
1918320f2790SHong Zhang 
1919320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
1920320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
1921320f2790SHong Zhang   PetscFunctionReturn(0);
1922320f2790SHong Zhang }
1923320f2790SHong Zhang 
19245242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1925320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1926320f2790SHong Zhang {
1927320f2790SHong Zhang   PetscErrorCode   ierr;
1928320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
1929320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
1930320f2790SHong Zhang 
1931320f2790SHong Zhang   PetscFunctionBegin;
1932de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
1933de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
1934320f2790SHong Zhang   ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
1935de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
1936320f2790SHong Zhang   PetscFunctionReturn(0);
1937320f2790SHong Zhang }
1938320f2790SHong Zhang 
1939320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1940320f2790SHong Zhang {
1941320f2790SHong Zhang   PetscErrorCode   ierr;
1942320f2790SHong Zhang   Mat              Ae,Be,Ce;
1943320f2790SHong Zhang   Mat_MPIDense     *c;
1944320f2790SHong Zhang   Mat_MatMultDense *ab;
1945320f2790SHong Zhang 
1946320f2790SHong Zhang   PetscFunctionBegin;
1947320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
1948378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1949320f2790SHong Zhang   }
1950320f2790SHong Zhang 
1951320f2790SHong Zhang   /* convert A and B to Elemental matrices Ae and Be */
1952320f2790SHong Zhang   ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr);
1953320f2790SHong Zhang   ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr);
1954320f2790SHong Zhang 
1955320f2790SHong Zhang   /* Ce = Ae*Be */
1956320f2790SHong Zhang   ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr);
1957320f2790SHong Zhang   ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr);
1958320f2790SHong Zhang 
1959320f2790SHong Zhang   /* convert Ce to C */
1960320f2790SHong Zhang   ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr);
1961320f2790SHong Zhang 
1962320f2790SHong Zhang   /* create data structure for reuse Cdense */
1963320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
1964320f2790SHong Zhang   c                  = (Mat_MPIDense*)(*C)->data;
1965320f2790SHong Zhang   c->abdense         = ab;
1966320f2790SHong Zhang 
1967320f2790SHong Zhang   ab->Ae             = Ae;
1968320f2790SHong Zhang   ab->Be             = Be;
1969320f2790SHong Zhang   ab->Ce             = Ce;
1970320f2790SHong Zhang   ab->destroy        = (*C)->ops->destroy;
1971320f2790SHong Zhang   (*C)->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
19729775878aSHong Zhang   (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
1973320f2790SHong Zhang   PetscFunctionReturn(0);
1974320f2790SHong Zhang }
1975320f2790SHong Zhang 
1976150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1977320f2790SHong Zhang {
1978320f2790SHong Zhang   PetscErrorCode ierr;
1979320f2790SHong Zhang 
1980320f2790SHong Zhang   PetscFunctionBegin;
1981320f2790SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */
198257299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1983320f2790SHong Zhang     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
198457299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1985320f2790SHong Zhang   } else {
198657299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1987320f2790SHong Zhang     ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
198857299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1989320f2790SHong Zhang   }
1990320f2790SHong Zhang   PetscFunctionReturn(0);
1991320f2790SHong Zhang }
19925242a7b1SHong Zhang #endif
199386aefd0dSHong Zhang 
1994