1*b0a32e0cSBarry Smith /*$Id: mpidense.c,v 1.146 2000/11/28 17:28:53 bsmith Exp bsmith $*/ 28965ea79SLois Curfman McInnes 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 770f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" 8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 98965ea79SLois Curfman McInnes 100de54da6SSatish Balay EXTERN_C_BEGIN 110de54da6SSatish Balay #undef __FUNC__ 12*b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIDense" 130de54da6SSatish Balay int MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 140de54da6SSatish Balay { 150de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 16273d9f13SBarry Smith int m = A->m,rstart = mdn->rstart,rank,ierr; 170de54da6SSatish Balay Scalar *array; 180de54da6SSatish Balay MPI_Comm comm; 190de54da6SSatish Balay 200de54da6SSatish Balay PetscFunctionBegin; 21273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 220de54da6SSatish Balay 230de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 240de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 250de54da6SSatish Balay 260de54da6SSatish Balay ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 270de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 280de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 290de54da6SSatish Balay ierr = MatCreateSeqDense(comm,m,m,array+m*rstart,B);CHKERRQ(ierr); 300de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 310de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 320de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 330de54da6SSatish Balay 340de54da6SSatish Balay *iscopy = PETSC_TRUE; 350de54da6SSatish Balay PetscFunctionReturn(0); 360de54da6SSatish Balay } 370de54da6SSatish Balay EXTERN_C_END 380de54da6SSatish Balay 39ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIDense(Mat); 407ef1d9bdSSatish Balay 415615d1e5SSatish Balay #undef __FUNC__ 42*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIDense" 438f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 448965ea79SLois Curfman McInnes { 4539b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 4639b7565bSBarry Smith int ierr,i,j,rstart = A->rstart,rend = A->rend,row; 47273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 488965ea79SLois Curfman McInnes 493a40ed3dSBarry Smith PetscFunctionBegin; 508965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 515ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 52273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 538965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 548965ea79SLois Curfman McInnes row = idxm[i] - rstart; 5539b7565bSBarry Smith if (roworiented) { 5639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 573a40ed3dSBarry Smith } else { 588965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 595ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 60273d9f13SBarry Smith if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 6139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 6239b7565bSBarry Smith } 638965ea79SLois Curfman McInnes } 643a40ed3dSBarry Smith } else { 653782ba37SSatish Balay if (!A->donotstash) { 6639b7565bSBarry Smith if (roworiented) { 678798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 68d36fbae8SSatish Balay } else { 698798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 7039b7565bSBarry Smith } 71b49de8d1SLois Curfman McInnes } 72b49de8d1SLois Curfman McInnes } 733782ba37SSatish Balay } 743a40ed3dSBarry Smith PetscFunctionReturn(0); 75b49de8d1SLois Curfman McInnes } 76b49de8d1SLois Curfman McInnes 775615d1e5SSatish Balay #undef __FUNC__ 78*b0a32e0cSBarry Smith #define __FUNC__ "MatGetValues_MPIDense" 798f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 80b49de8d1SLois Curfman McInnes { 81b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 82b49de8d1SLois Curfman McInnes int ierr,i,j,rstart = mdn->rstart,rend = mdn->rend,row; 83b49de8d1SLois Curfman McInnes 843a40ed3dSBarry Smith PetscFunctionBegin; 85b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 8629bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 87273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 88b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 89b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 90b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 9129bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 92273d9f13SBarry Smith if (idxn[j] >= mat->N) { 9329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 94a8c6a408SBarry Smith } 95b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 96b49de8d1SLois Curfman McInnes } 97a8c6a408SBarry Smith } else { 9829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 998965ea79SLois Curfman McInnes } 1008965ea79SLois Curfman McInnes } 1013a40ed3dSBarry Smith PetscFunctionReturn(0); 1028965ea79SLois Curfman McInnes } 1038965ea79SLois Curfman McInnes 1045615d1e5SSatish Balay #undef __FUNC__ 105*b0a32e0cSBarry Smith #define __FUNC__ "MatGetArray_MPIDense" 1068f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array) 107ff14e315SSatish Balay { 108ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 109ff14e315SSatish Balay int ierr; 110ff14e315SSatish Balay 1113a40ed3dSBarry Smith PetscFunctionBegin; 112ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1133a40ed3dSBarry Smith PetscFunctionReturn(0); 114ff14e315SSatish Balay } 115ff14e315SSatish Balay 1165615d1e5SSatish Balay #undef __FUNC__ 117*b0a32e0cSBarry Smith #define __FUNC__ "MatGetSubMatrix_MPIDense" 118ca3fa75bSLois Curfman McInnes static int MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,int cs,MatReuse scall,Mat *B) 119ca3fa75bSLois Curfman McInnes { 120ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 121ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 12272d926a5SLois Curfman McInnes int i,j,ierr,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols,rank; 123ca3fa75bSLois Curfman McInnes Scalar *av,*bv,*v = lmat->v; 124ca3fa75bSLois Curfman McInnes Mat newmat; 125ca3fa75bSLois Curfman McInnes 126ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1277eba5e9cSLois Curfman McInnes ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 128ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 129ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 130b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 131b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 132ca3fa75bSLois Curfman McInnes 133ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1347eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1357eba5e9cSLois Curfman McInnes original matrix! */ 136ca3fa75bSLois Curfman McInnes 137ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1387eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 139ca3fa75bSLois Curfman McInnes 140ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 141ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 14229bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 1437eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 144ca3fa75bSLois Curfman McInnes newmat = *B; 145ca3fa75bSLois Curfman McInnes } else { 146ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 14732828cfdSBarry Smith ierr = MatCreateMPIDense(A->comm,nrows,cs,PETSC_DECIDE,ncols,PETSC_NULL,&newmat);CHKERRQ(ierr); 148ca3fa75bSLois Curfman McInnes } 149ca3fa75bSLois Curfman McInnes 150ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 151ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 152ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 153ca3fa75bSLois Curfman McInnes 154ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 155ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 156ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 1577eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 158ca3fa75bSLois Curfman McInnes } 159ca3fa75bSLois Curfman McInnes } 160ca3fa75bSLois Curfman McInnes 161ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 162ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 163ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 164ca3fa75bSLois Curfman McInnes 165ca3fa75bSLois Curfman McInnes /* Free work space */ 166ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 167ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 168ca3fa75bSLois Curfman McInnes *B = newmat; 169ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 170ca3fa75bSLois Curfman McInnes } 171ca3fa75bSLois Curfman McInnes 172ca3fa75bSLois Curfman McInnes #undef __FUNC__ 173*b0a32e0cSBarry Smith #define __FUNC__ "MatRestoreArray_MPIDense" 1748f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array) 175ff14e315SSatish Balay { 1763a40ed3dSBarry Smith PetscFunctionBegin; 1773a40ed3dSBarry Smith PetscFunctionReturn(0); 178ff14e315SSatish Balay } 179ff14e315SSatish Balay 1805615d1e5SSatish Balay #undef __FUNC__ 181*b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyBegin_MPIDense" 1828f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 1838965ea79SLois Curfman McInnes { 18439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 1858965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 186d36fbae8SSatish Balay int ierr,nstash,reallocs; 1878965ea79SLois Curfman McInnes InsertMode addv; 1888965ea79SLois Curfman McInnes 1893a40ed3dSBarry Smith PetscFunctionBegin; 1908965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 191ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 1927056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 19329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 1948965ea79SLois Curfman McInnes } 195e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 1968965ea79SLois Curfman McInnes 1978798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,mdn->rowners);CHKERRQ(ierr); 1988798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 199*b0a32e0cSBarry Smith PetscLogInfo(mdn->A,"MatAssemblyBegin_MPIDense:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 2003a40ed3dSBarry Smith PetscFunctionReturn(0); 2018965ea79SLois Curfman McInnes } 2028965ea79SLois Curfman McInnes 2035615d1e5SSatish Balay #undef __FUNC__ 204*b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyEnd_MPIDense" 2058f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2068965ea79SLois Curfman McInnes { 20739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2087ef1d9bdSSatish Balay int i,n,ierr,*row,*col,flg,j,rstart,ncols; 2097ef1d9bdSSatish Balay Scalar *val; 210e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2118965ea79SLois Curfman McInnes 2123a40ed3dSBarry Smith PetscFunctionBegin; 2138965ea79SLois Curfman McInnes /* wait on receives */ 2147ef1d9bdSSatish Balay while (1) { 2158798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2167ef1d9bdSSatish Balay if (!flg) break; 2178965ea79SLois Curfman McInnes 2187ef1d9bdSSatish Balay for (i=0; i<n;) { 2197ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2207ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2217ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2227ef1d9bdSSatish Balay else ncols = n-i; 2237ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2247ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2257ef1d9bdSSatish Balay i = j; 2268965ea79SLois Curfman McInnes } 2277ef1d9bdSSatish Balay } 2288798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2298965ea79SLois Curfman McInnes 23039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 23139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 2328965ea79SLois Curfman McInnes 2336d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 23439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 2358965ea79SLois Curfman McInnes } 2363a40ed3dSBarry Smith PetscFunctionReturn(0); 2378965ea79SLois Curfman McInnes } 2388965ea79SLois Curfman McInnes 2395615d1e5SSatish Balay #undef __FUNC__ 240*b0a32e0cSBarry Smith #define __FUNC__ "MatZeroEntries_MPIDense" 2418f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A) 2428965ea79SLois Curfman McInnes { 2433a40ed3dSBarry Smith int ierr; 24439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 2453a40ed3dSBarry Smith 2463a40ed3dSBarry Smith PetscFunctionBegin; 2473a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 2483a40ed3dSBarry Smith PetscFunctionReturn(0); 2498965ea79SLois Curfman McInnes } 2508965ea79SLois Curfman McInnes 2515615d1e5SSatish Balay #undef __FUNC__ 252*b0a32e0cSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIDense" 2538f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs) 2544e220ebcSLois Curfman McInnes { 2553a40ed3dSBarry Smith PetscFunctionBegin; 2564e220ebcSLois Curfman McInnes *bs = 1; 2573a40ed3dSBarry Smith PetscFunctionReturn(0); 2584e220ebcSLois Curfman McInnes } 2594e220ebcSLois Curfman McInnes 2608965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 2618965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 2628965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 2633501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 2648965ea79SLois Curfman McInnes routine. 2658965ea79SLois Curfman McInnes */ 2665615d1e5SSatish Balay #undef __FUNC__ 267*b0a32e0cSBarry Smith #define __FUNC__ "MatZeroRows_MPIDense" 2688f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 2698965ea79SLois Curfman McInnes { 27039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 2718965ea79SLois Curfman McInnes int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 27235d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work; 2738965ea79SLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2748965ea79SLois Curfman McInnes int *rvalues,tag = A->tag,count,base,slen,n,*source; 2758965ea79SLois Curfman McInnes int *lens,imdex,*lrows,*values; 2768965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 2778965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 2788965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 2798965ea79SLois Curfman McInnes IS istmp; 28035d8aa7fSBarry Smith PetscTruth found; 2818965ea79SLois Curfman McInnes 2823a40ed3dSBarry Smith PetscFunctionBegin; 283b9b97703SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 2848965ea79SLois Curfman McInnes ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 2858965ea79SLois Curfman McInnes 2868965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 287*b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 288549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 289549d3d68SSatish Balay procs = nprocs + size; 290*b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 2918965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 2928965ea79SLois Curfman McInnes idx = rows[i]; 29335d8aa7fSBarry Smith found = PETSC_FALSE; 2948965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 2958965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 29635d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 2978965ea79SLois Curfman McInnes } 2988965ea79SLois Curfman McInnes } 29929bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3008965ea79SLois Curfman McInnes } 3018965ea79SLois Curfman McInnes nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 3028965ea79SLois Curfman McInnes 3038965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 304*b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 3056831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 3068965ea79SLois Curfman McInnes nmax = work[rank]; 3076831982aSBarry Smith nrecvs = work[size+rank]; 308606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 3098965ea79SLois Curfman McInnes 3108965ea79SLois Curfman McInnes /* post receives: */ 311*b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 312*b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3138965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 314ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3158965ea79SLois Curfman McInnes } 3168965ea79SLois Curfman McInnes 3178965ea79SLois Curfman McInnes /* do sends: 3188965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3198965ea79SLois Curfman McInnes the ith processor 3208965ea79SLois Curfman McInnes */ 321*b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 322*b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 323*b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 3248965ea79SLois Curfman McInnes starts[0] = 0; 3258965ea79SLois Curfman McInnes for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 3268965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3278965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3288965ea79SLois Curfman McInnes } 3298965ea79SLois Curfman McInnes ISRestoreIndices(is,&rows); 3308965ea79SLois Curfman McInnes 3318965ea79SLois Curfman McInnes starts[0] = 0; 3328965ea79SLois Curfman McInnes for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 3338965ea79SLois Curfman McInnes count = 0; 3348965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 3358965ea79SLois Curfman McInnes if (procs[i]) { 336ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3378965ea79SLois Curfman McInnes } 3388965ea79SLois Curfman McInnes } 339606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3408965ea79SLois Curfman McInnes 3418965ea79SLois Curfman McInnes base = owners[rank]; 3428965ea79SLois Curfman McInnes 3438965ea79SLois Curfman McInnes /* wait on receives */ 344*b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 3458965ea79SLois Curfman McInnes source = lens + nrecvs; 3468965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 3478965ea79SLois Curfman McInnes while (count) { 348ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 3498965ea79SLois Curfman McInnes /* unpack receives into our local space */ 350ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 3518965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 3528965ea79SLois Curfman McInnes lens[imdex] = n; 3538965ea79SLois Curfman McInnes slen += n; 3548965ea79SLois Curfman McInnes count--; 3558965ea79SLois Curfman McInnes } 356606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 3578965ea79SLois Curfman McInnes 3588965ea79SLois Curfman McInnes /* move the data into the send scatter */ 359*b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 3608965ea79SLois Curfman McInnes count = 0; 3618965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 3628965ea79SLois Curfman McInnes values = rvalues + i*nmax; 3638965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 3648965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 3658965ea79SLois Curfman McInnes } 3668965ea79SLois Curfman McInnes } 367606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 368606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 369606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 370606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 3718965ea79SLois Curfman McInnes 3728965ea79SLois Curfman McInnes /* actually zap the local rows */ 373029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 374*b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 375606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 3768965ea79SLois Curfman McInnes ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 3778965ea79SLois Curfman McInnes ierr = ISDestroy(istmp);CHKERRQ(ierr); 3788965ea79SLois Curfman McInnes 3798965ea79SLois Curfman McInnes /* wait on sends */ 3808965ea79SLois Curfman McInnes if (nsends) { 381*b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 382ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 383606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 3848965ea79SLois Curfman McInnes } 385606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 386606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionReturn(0); 3898965ea79SLois Curfman McInnes } 3908965ea79SLois Curfman McInnes 3915615d1e5SSatish Balay #undef __FUNC__ 392*b0a32e0cSBarry Smith #define __FUNC__ "MatMult_MPIDense" 3938f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3948965ea79SLois Curfman McInnes { 39539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 3968965ea79SLois Curfman McInnes int ierr; 397c456f294SBarry Smith 3983a40ed3dSBarry Smith PetscFunctionBegin; 39943a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 40043a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 40144cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4023a40ed3dSBarry Smith PetscFunctionReturn(0); 4038965ea79SLois Curfman McInnes } 4048965ea79SLois Curfman McInnes 4055615d1e5SSatish Balay #undef __FUNC__ 406*b0a32e0cSBarry Smith #define __FUNC__ "MatMultAdd_MPIDense" 4078f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4088965ea79SLois Curfman McInnes { 40939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 4108965ea79SLois Curfman McInnes int ierr; 411c456f294SBarry Smith 4123a40ed3dSBarry Smith PetscFunctionBegin; 41343a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41443a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41544cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4163a40ed3dSBarry Smith PetscFunctionReturn(0); 4178965ea79SLois Curfman McInnes } 4188965ea79SLois Curfman McInnes 4195615d1e5SSatish Balay #undef __FUNC__ 420*b0a32e0cSBarry Smith #define __FUNC__ "MatMultTranspose_MPIDense" 4217c922b88SBarry Smith int MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 422096963f5SLois Curfman McInnes { 423096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 424096963f5SLois Curfman McInnes int ierr; 4253501a2bdSLois Curfman McInnes Scalar zero = 0.0; 426096963f5SLois Curfman McInnes 4273a40ed3dSBarry Smith PetscFunctionBegin; 4283501a2bdSLois Curfman McInnes ierr = VecSet(&zero,yy);CHKERRQ(ierr); 4297c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 430537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 431537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 4323a40ed3dSBarry Smith PetscFunctionReturn(0); 433096963f5SLois Curfman McInnes } 434096963f5SLois Curfman McInnes 4355615d1e5SSatish Balay #undef __FUNC__ 436*b0a32e0cSBarry Smith #define __FUNC__ "MatMultTransposeAdd_MPIDense" 4377c922b88SBarry Smith int MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 438096963f5SLois Curfman McInnes { 439096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 440096963f5SLois Curfman McInnes int ierr; 441096963f5SLois Curfman McInnes 4423a40ed3dSBarry Smith PetscFunctionBegin; 4433501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4447c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 445537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 446537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 4473a40ed3dSBarry Smith PetscFunctionReturn(0); 448096963f5SLois Curfman McInnes } 449096963f5SLois Curfman McInnes 4505615d1e5SSatish Balay #undef __FUNC__ 451*b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonal_MPIDense" 4528f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v) 4538965ea79SLois Curfman McInnes { 45439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 455096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 456273d9f13SBarry Smith int ierr,len,i,n,m = A->m,radd; 45744cd7ae7SLois Curfman McInnes Scalar *x,zero = 0.0; 458ed3cc1f0SBarry Smith 4593a40ed3dSBarry Smith PetscFunctionBegin; 460273d9f13SBarry Smith ierr = VecSet(&zero,v);CHKERRQ(ierr); 461096963f5SLois Curfman McInnes ierr = VecGetArray(v,&x);CHKERRQ(ierr); 462096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 463273d9f13SBarry Smith if (n != A->M) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 464273d9f13SBarry Smith len = PetscMin(a->A->m,a->A->n); 4657ddc982cSLois Curfman McInnes radd = a->rstart*m; 46644cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 467096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 468096963f5SLois Curfman McInnes } 4699a8c540fSSatish Balay ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 4703a40ed3dSBarry Smith PetscFunctionReturn(0); 4718965ea79SLois Curfman McInnes } 4728965ea79SLois Curfman McInnes 4735615d1e5SSatish Balay #undef __FUNC__ 474*b0a32e0cSBarry Smith #define __FUNC__ "MatDestroy_MPIDense" 475e1311b90SBarry Smith int MatDestroy_MPIDense(Mat mat) 4768965ea79SLois Curfman McInnes { 4773501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 4788965ea79SLois Curfman McInnes int ierr; 479ed3cc1f0SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 48194d884c6SBarry Smith 482aa482453SBarry Smith #if defined(PETSC_USE_LOG) 483*b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mat->M,mat->N); 4848965ea79SLois Curfman McInnes #endif 4858798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 486606d414cSSatish Balay ierr = PetscFree(mdn->rowners);CHKERRQ(ierr); 4873501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 4883501a2bdSLois Curfman McInnes if (mdn->lvec) VecDestroy(mdn->lvec); 4893501a2bdSLois Curfman McInnes if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 490622d7880SLois Curfman McInnes if (mdn->factor) { 491606d414cSSatish Balay if (mdn->factor->temp) {ierr = PetscFree(mdn->factor->temp);CHKERRQ(ierr);} 492606d414cSSatish Balay if (mdn->factor->tag) {ierr = PetscFree(mdn->factor->tag);CHKERRQ(ierr);} 493606d414cSSatish Balay if (mdn->factor->pivots) {ierr = PetscFree(mdn->factor->pivots);CHKERRQ(ierr);} 494606d414cSSatish Balay ierr = PetscFree(mdn->factor);CHKERRQ(ierr); 495622d7880SLois Curfman McInnes } 496606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 4973a40ed3dSBarry Smith PetscFunctionReturn(0); 4988965ea79SLois Curfman McInnes } 49939ddd567SLois Curfman McInnes 5005615d1e5SSatish Balay #undef __FUNC__ 501*b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIDense_Binary" 502*b0a32e0cSBarry Smith static int MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5038965ea79SLois Curfman McInnes { 50439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 5058965ea79SLois Curfman McInnes int ierr; 5067056b6fcSBarry Smith 5073a40ed3dSBarry Smith PetscFunctionBegin; 50839ddd567SLois Curfman McInnes if (mdn->size == 1) { 50939ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 5108965ea79SLois Curfman McInnes } 51129bbc08cSBarry Smith else SETERRQ(PETSC_ERR_SUP,"Only uniprocessor output supported"); 5123a40ed3dSBarry Smith PetscFunctionReturn(0); 5138965ea79SLois Curfman McInnes } 5148965ea79SLois Curfman McInnes 5155615d1e5SSatish Balay #undef __FUNC__ 516*b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIDense_ASCIIorDraworSocket" 517*b0a32e0cSBarry Smith static int MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 5188965ea79SLois Curfman McInnes { 51939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 52077ed5343SBarry Smith int ierr,format,size = mdn->size,rank = mdn->rank; 521*b0a32e0cSBarry Smith PetscViewerType vtype; 522f1af5d2fSBarry Smith PetscTruth isascii,isdraw; 523*b0a32e0cSBarry Smith PetscViewer sviewer; 5248965ea79SLois Curfman McInnes 5253a40ed3dSBarry Smith PetscFunctionBegin; 526*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 527*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 528f1af5d2fSBarry Smith if (isascii) { 529*b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 530*b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 531*b0a32e0cSBarry Smith if (format == PETSC_VIEWER_FORMAT_ASCII_INFO_LONG) { 5324e220ebcSLois Curfman McInnes MatInfo info; 533888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 534*b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mat->m, 5356831982aSBarry Smith (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr); 536*b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5373501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 5383a40ed3dSBarry Smith PetscFunctionReturn(0); 539*b0a32e0cSBarry Smith } else if (format == PETSC_VIEWER_FORMAT_ASCII_INFO) { 5403a40ed3dSBarry Smith PetscFunctionReturn(0); 5418965ea79SLois Curfman McInnes } 542f1af5d2fSBarry Smith } else if (isdraw) { 543*b0a32e0cSBarry Smith PetscDraw draw; 544f1af5d2fSBarry Smith PetscTruth isnull; 545f1af5d2fSBarry Smith 546*b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 547*b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 548f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 549f1af5d2fSBarry Smith } 55077ed5343SBarry Smith 5518965ea79SLois Curfman McInnes if (size == 1) { 55239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 5533a40ed3dSBarry Smith } else { 5548965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 5558965ea79SLois Curfman McInnes Mat A; 556273d9f13SBarry Smith int M = mat->M,N = mat->N,m,row,i,nz,*cols; 55739ddd567SLois Curfman McInnes Scalar *vals; 5588965ea79SLois Curfman McInnes 5598965ea79SLois Curfman McInnes if (!rank) { 560f1af5d2fSBarry Smith ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A);CHKERRQ(ierr); 5613a40ed3dSBarry Smith } else { 562f1af5d2fSBarry Smith ierr = MatCreateMPIDense(mat->comm,0,0,M,N,PETSC_NULL,&A);CHKERRQ(ierr); 5638965ea79SLois Curfman McInnes } 564*b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 5658965ea79SLois Curfman McInnes 56639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 56739ddd567SLois Curfman McInnes but it's quick for now */ 568273d9f13SBarry Smith row = mdn->rstart; m = mdn->A->m; 5698965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 57039ddd567SLois Curfman McInnes ierr = MatGetRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 57139ddd567SLois Curfman McInnes ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 57239ddd567SLois Curfman McInnes ierr = MatRestoreRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 57339ddd567SLois Curfman McInnes row++; 5748965ea79SLois Curfman McInnes } 5758965ea79SLois Curfman McInnes 5766d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 5776d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 578*b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 579b9b97703SBarry Smith if (!rank) { 5806831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 5818965ea79SLois Curfman McInnes } 582*b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 583*b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5848965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 5858965ea79SLois Curfman McInnes } 5863a40ed3dSBarry Smith PetscFunctionReturn(0); 5878965ea79SLois Curfman McInnes } 5888965ea79SLois Curfman McInnes 5895615d1e5SSatish Balay #undef __FUNC__ 590*b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIDense" 591*b0a32e0cSBarry Smith int MatView_MPIDense(Mat mat,PetscViewer viewer) 5928965ea79SLois Curfman McInnes { 59339ddd567SLois Curfman McInnes int ierr; 594f1af5d2fSBarry Smith PetscTruth isascii,isbinary,isdraw,issocket; 5958965ea79SLois Curfman McInnes 596433994e6SBarry Smith PetscFunctionBegin; 5970f5bd95cSBarry Smith 598*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 599*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 600*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 601*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 6020f5bd95cSBarry Smith 603f1af5d2fSBarry Smith if (isascii || issocket || isdraw) { 604f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6050f5bd95cSBarry Smith } else if (isbinary) { 6063a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 6075cd90555SBarry Smith } else { 60829bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 6098965ea79SLois Curfman McInnes } 6103a40ed3dSBarry Smith PetscFunctionReturn(0); 6118965ea79SLois Curfman McInnes } 6128965ea79SLois Curfman McInnes 6135615d1e5SSatish Balay #undef __FUNC__ 614*b0a32e0cSBarry Smith #define __FUNC__ "MatGetInfo_MPIDense" 6158f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6168965ea79SLois Curfman McInnes { 6173501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6183501a2bdSLois Curfman McInnes Mat mdn = mat->A; 6194e220ebcSLois Curfman McInnes int ierr; 620329f5518SBarry Smith PetscReal isend[5],irecv[5]; 6218965ea79SLois Curfman McInnes 6223a40ed3dSBarry Smith PetscFunctionBegin; 623273d9f13SBarry Smith info->rows_global = (double)A->M; 624273d9f13SBarry Smith info->columns_global = (double)A->N; 625273d9f13SBarry Smith info->rows_local = (double)A->m; 626273d9f13SBarry Smith info->columns_local = (double)A->N; 6274e220ebcSLois Curfman McInnes info->block_size = 1.0; 6284e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 6294e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 6304e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 6318965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 6324e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 6334e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 6344e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 6354e220ebcSLois Curfman McInnes info->memory = isend[3]; 6364e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 6378965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 638f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 6394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6448965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 645f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 6464e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6474e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6484e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6494e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6504e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6518965ea79SLois Curfman McInnes } 6524e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 6534e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 6544e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 6553a40ed3dSBarry Smith PetscFunctionReturn(0); 6568965ea79SLois Curfman McInnes } 6578965ea79SLois Curfman McInnes 6585615d1e5SSatish Balay #undef __FUNC__ 659*b0a32e0cSBarry Smith #define __FUNC__ "MatSetOption_MPIDense" 6608f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op) 6618965ea79SLois Curfman McInnes { 66239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 663273d9f13SBarry Smith int ierr; 6648965ea79SLois Curfman McInnes 6653a40ed3dSBarry Smith PetscFunctionBegin; 6666d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 6676d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 6684787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR || 6694787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 670219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 671219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED) { 672273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 673b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 674273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 675273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 676b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 677219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 6786d4a8577SBarry Smith op == MAT_SYMMETRIC || 6796d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 680b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 681b51ba29fSSatish Balay op == MAT_USE_HASH_TABLE) { 682*b0a32e0cSBarry Smith PetscLogInfo(A,"MatSetOption_MPIDense:Option ignored\n"); 6833a40ed3dSBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 684273d9f13SBarry Smith a->roworiented = PETSC_FALSE; 685273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 6863782ba37SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 687273d9f13SBarry Smith a->donotstash = PETSC_TRUE; 6883a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 68929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 6903a40ed3dSBarry Smith } else { 69129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 6923a40ed3dSBarry Smith } 6933a40ed3dSBarry Smith PetscFunctionReturn(0); 6948965ea79SLois Curfman McInnes } 6958965ea79SLois Curfman McInnes 6965615d1e5SSatish Balay #undef __FUNC__ 697*b0a32e0cSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIDense" 6988f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 6998965ea79SLois Curfman McInnes { 7003501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7013a40ed3dSBarry Smith 7023a40ed3dSBarry Smith PetscFunctionBegin; 7034c49b128SBarry Smith if (m) *m = mat->rstart; 7044c49b128SBarry Smith if (n) *n = mat->rend; 7053a40ed3dSBarry Smith PetscFunctionReturn(0); 7068965ea79SLois Curfman McInnes } 7078965ea79SLois Curfman McInnes 7085615d1e5SSatish Balay #undef __FUNC__ 709*b0a32e0cSBarry Smith #define __FUNC__ "MatGetRow_MPIDense" 7108f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 7118965ea79SLois Curfman McInnes { 7123501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7133a40ed3dSBarry Smith int lrow,rstart = mat->rstart,rend = mat->rend,ierr; 7148965ea79SLois Curfman McInnes 7153a40ed3dSBarry Smith PetscFunctionBegin; 71629bbc08cSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 7178965ea79SLois Curfman McInnes lrow = row - rstart; 7183a40ed3dSBarry Smith ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr); 7193a40ed3dSBarry Smith PetscFunctionReturn(0); 7208965ea79SLois Curfman McInnes } 7218965ea79SLois Curfman McInnes 7225615d1e5SSatish Balay #undef __FUNC__ 723*b0a32e0cSBarry Smith #define __FUNC__ "MatRestoreRow_MPIDense" 7248f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 7258965ea79SLois Curfman McInnes { 726606d414cSSatish Balay int ierr; 727606d414cSSatish Balay 7283a40ed3dSBarry Smith PetscFunctionBegin; 729606d414cSSatish Balay if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 730606d414cSSatish Balay if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 7313a40ed3dSBarry Smith PetscFunctionReturn(0); 7328965ea79SLois Curfman McInnes } 7338965ea79SLois Curfman McInnes 7345615d1e5SSatish Balay #undef __FUNC__ 735*b0a32e0cSBarry Smith #define __FUNC__ "MatDiagonalScale_MPIDense" 7365b2fa520SLois Curfman McInnes int MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7375b2fa520SLois Curfman McInnes { 7385b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 7395b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 7405b2fa520SLois Curfman McInnes Scalar *l,*r,x,*v; 741273d9f13SBarry Smith int ierr,i,j,s2a,s3a,s2,s3,m=mdn->A->m,n=mdn->A->n; 7425b2fa520SLois Curfman McInnes 7435b2fa520SLois Curfman McInnes PetscFunctionBegin; 74472d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7455b2fa520SLois Curfman McInnes if (ll) { 74672d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 74729bbc08cSBarry Smith if (s2a != s2) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size"); 7485b2fa520SLois Curfman McInnes ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 7495b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 7505b2fa520SLois Curfman McInnes x = l[i]; 7515b2fa520SLois Curfman McInnes v = mat->v + i; 7525b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 7535b2fa520SLois Curfman McInnes } 7545b2fa520SLois Curfman McInnes ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 755*b0a32e0cSBarry Smith PetscLogFlops(n*m); 7565b2fa520SLois Curfman McInnes } 7575b2fa520SLois Curfman McInnes if (rr) { 75872d926a5SLois Curfman McInnes ierr = VecGetSize(rr,&s3a);CHKERRQ(ierr); 75929bbc08cSBarry Smith if (s3a != s3) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size"); 7605b2fa520SLois Curfman McInnes ierr = VecScatterBegin(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 7615b2fa520SLois Curfman McInnes ierr = VecScatterEnd(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 7625b2fa520SLois Curfman McInnes ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 7635b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 7645b2fa520SLois Curfman McInnes x = r[i]; 7655b2fa520SLois Curfman McInnes v = mat->v + i*m; 7665b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 7675b2fa520SLois Curfman McInnes } 76872d926a5SLois Curfman McInnes ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 769*b0a32e0cSBarry Smith PetscLogFlops(n*m); 7705b2fa520SLois Curfman McInnes } 7715b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 7725b2fa520SLois Curfman McInnes } 7735b2fa520SLois Curfman McInnes 7745b2fa520SLois Curfman McInnes #undef __FUNC__ 775*b0a32e0cSBarry Smith #define __FUNC__ "MatNorm_MPIDense" 776329f5518SBarry Smith int MatNorm_MPIDense(Mat A,NormType type,PetscReal *norm) 777096963f5SLois Curfman McInnes { 7783501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 7793501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 7803501a2bdSLois Curfman McInnes int ierr,i,j; 781329f5518SBarry Smith PetscReal sum = 0.0; 7823501a2bdSLois Curfman McInnes Scalar *v = mat->v; 7833501a2bdSLois Curfman McInnes 7843a40ed3dSBarry Smith PetscFunctionBegin; 7853501a2bdSLois Curfman McInnes if (mdn->size == 1) { 7863501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,norm);CHKERRQ(ierr); 7873501a2bdSLois Curfman McInnes } else { 7883501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 789273d9f13SBarry Smith for (i=0; i<mdn->A->n*mdn->A->m; i++) { 790aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 791329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 7923501a2bdSLois Curfman McInnes #else 7933501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 7943501a2bdSLois Curfman McInnes #endif 7953501a2bdSLois Curfman McInnes } 796ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 7973501a2bdSLois Curfman McInnes *norm = sqrt(*norm); 798*b0a32e0cSBarry Smith PetscLogFlops(2*mdn->A->n*mdn->A->m); 7993a40ed3dSBarry Smith } else if (type == NORM_1) { 800329f5518SBarry Smith PetscReal *tmp,*tmp2; 801*b0a32e0cSBarry Smith ierr = PetscMalloc(2*A->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 802273d9f13SBarry Smith tmp2 = tmp + A->N; 803273d9f13SBarry Smith ierr = PetscMemzero(tmp,2*A->N*sizeof(PetscReal));CHKERRQ(ierr); 804096963f5SLois Curfman McInnes *norm = 0.0; 8053501a2bdSLois Curfman McInnes v = mat->v; 806273d9f13SBarry Smith for (j=0; j<mdn->A->n; j++) { 807273d9f13SBarry Smith for (i=0; i<mdn->A->m; i++) { 80867e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8093501a2bdSLois Curfman McInnes } 8103501a2bdSLois Curfman McInnes } 811273d9f13SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 812273d9f13SBarry Smith for (j=0; j<A->N; j++) { 8133501a2bdSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 8143501a2bdSLois Curfman McInnes } 815606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 816*b0a32e0cSBarry Smith PetscLogFlops(A->n*A->m); 8173a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 818329f5518SBarry Smith PetscReal ntemp; 8193501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 820ca161407SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 8213a40ed3dSBarry Smith } else { 82229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 8233501a2bdSLois Curfman McInnes } 8243501a2bdSLois Curfman McInnes } 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 8263501a2bdSLois Curfman McInnes } 8273501a2bdSLois Curfman McInnes 8285615d1e5SSatish Balay #undef __FUNC__ 829*b0a32e0cSBarry Smith #define __FUNC__ "MatTranspose_MPIDense" 8308f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout) 8313501a2bdSLois Curfman McInnes { 8323501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8333501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 8343501a2bdSLois Curfman McInnes Mat B; 835273d9f13SBarry Smith int M = A->M,N = A->N,m,n,*rwork,rstart = a->rstart; 8363501a2bdSLois Curfman McInnes int j,i,ierr; 8373501a2bdSLois Curfman McInnes Scalar *v; 8383501a2bdSLois Curfman McInnes 8393a40ed3dSBarry Smith PetscFunctionBegin; 8407c922b88SBarry Smith if (!matout && M != N) { 84129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 8427056b6fcSBarry Smith } 8437056b6fcSBarry Smith ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 8443501a2bdSLois Curfman McInnes 845273d9f13SBarry Smith m = a->A->m; n = a->A->n; v = Aloc->v; 846*b0a32e0cSBarry Smith ierr = PetscMalloc(n*sizeof(int),&rwork);CHKERRQ(ierr); 8473501a2bdSLois Curfman McInnes for (j=0; j<n; j++) { 8483501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8493501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 8503501a2bdSLois Curfman McInnes v += m; 8513501a2bdSLois Curfman McInnes } 852606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 8536d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8546d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8557c922b88SBarry Smith if (matout) { 8563501a2bdSLois Curfman McInnes *matout = B; 8573501a2bdSLois Curfman McInnes } else { 858273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 8593501a2bdSLois Curfman McInnes } 8603a40ed3dSBarry Smith PetscFunctionReturn(0); 861096963f5SLois Curfman McInnes } 862096963f5SLois Curfman McInnes 863d9eff348SSatish Balay #include "petscblaslapack.h" 8645615d1e5SSatish Balay #undef __FUNC__ 865*b0a32e0cSBarry Smith #define __FUNC__ "MatScale_MPIDense" 8668f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA) 86744cd7ae7SLois Curfman McInnes { 86844cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 86944cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 87044cd7ae7SLois Curfman McInnes int one = 1,nz; 87144cd7ae7SLois Curfman McInnes 8723a40ed3dSBarry Smith PetscFunctionBegin; 873273d9f13SBarry Smith nz = inA->m*inA->N; 87444cd7ae7SLois Curfman McInnes BLscal_(&nz,alpha,a->v,&one); 875*b0a32e0cSBarry Smith PetscLogFlops(nz); 8763a40ed3dSBarry Smith PetscFunctionReturn(0); 87744cd7ae7SLois Curfman McInnes } 87844cd7ae7SLois Curfman McInnes 8795609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 880ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIDense(Mat,int,IS *,IS *,MatReuse,Mat **); 8818965ea79SLois Curfman McInnes 882273d9f13SBarry Smith #undef __FUNC__ 883*b0a32e0cSBarry Smith #define __FUNC__ "MatSetUpPreallocation_MPIDense" 884273d9f13SBarry Smith int MatSetUpPreallocation_MPIDense(Mat A) 885273d9f13SBarry Smith { 886273d9f13SBarry Smith int ierr; 887273d9f13SBarry Smith 888273d9f13SBarry Smith PetscFunctionBegin; 889273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 890273d9f13SBarry Smith PetscFunctionReturn(0); 891273d9f13SBarry Smith } 892273d9f13SBarry Smith 8938965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 89409dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 89509dc0095SBarry Smith MatGetRow_MPIDense, 89609dc0095SBarry Smith MatRestoreRow_MPIDense, 89709dc0095SBarry Smith MatMult_MPIDense, 89809dc0095SBarry Smith MatMultAdd_MPIDense, 8997c922b88SBarry Smith MatMultTranspose_MPIDense, 9007c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 9018965ea79SLois Curfman McInnes 0, 90209dc0095SBarry Smith 0, 90309dc0095SBarry Smith 0, 90409dc0095SBarry Smith 0, 90509dc0095SBarry Smith 0, 90609dc0095SBarry Smith 0, 90709dc0095SBarry Smith 0, 90809dc0095SBarry Smith MatTranspose_MPIDense, 90909dc0095SBarry Smith MatGetInfo_MPIDense,0, 91009dc0095SBarry Smith MatGetDiagonal_MPIDense, 9115b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 91209dc0095SBarry Smith MatNorm_MPIDense, 91309dc0095SBarry Smith MatAssemblyBegin_MPIDense, 91409dc0095SBarry Smith MatAssemblyEnd_MPIDense, 91509dc0095SBarry Smith 0, 91609dc0095SBarry Smith MatSetOption_MPIDense, 91709dc0095SBarry Smith MatZeroEntries_MPIDense, 91809dc0095SBarry Smith MatZeroRows_MPIDense, 91909dc0095SBarry Smith 0, 92009dc0095SBarry Smith 0, 92109dc0095SBarry Smith 0, 92209dc0095SBarry Smith 0, 923273d9f13SBarry Smith MatSetUpPreallocation_MPIDense, 924273d9f13SBarry Smith 0, 92539ddd567SLois Curfman McInnes MatGetOwnershipRange_MPIDense, 92609dc0095SBarry Smith 0, 92709dc0095SBarry Smith 0, 92809dc0095SBarry Smith MatGetArray_MPIDense, 92909dc0095SBarry Smith MatRestoreArray_MPIDense, 9305609ef8eSBarry Smith MatDuplicate_MPIDense, 93109dc0095SBarry Smith 0, 93209dc0095SBarry Smith 0, 93309dc0095SBarry Smith 0, 93409dc0095SBarry Smith 0, 93509dc0095SBarry Smith 0, 9362ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 93709dc0095SBarry Smith 0, 93809dc0095SBarry Smith MatGetValues_MPIDense, 93909dc0095SBarry Smith 0, 94009dc0095SBarry Smith 0, 94109dc0095SBarry Smith MatScale_MPIDense, 94209dc0095SBarry Smith 0, 94309dc0095SBarry Smith 0, 94409dc0095SBarry Smith 0, 94509dc0095SBarry Smith MatGetBlockSize_MPIDense, 94609dc0095SBarry Smith 0, 94709dc0095SBarry Smith 0, 94809dc0095SBarry Smith 0, 94909dc0095SBarry Smith 0, 95009dc0095SBarry Smith 0, 95109dc0095SBarry Smith 0, 95209dc0095SBarry Smith 0, 95309dc0095SBarry Smith 0, 95409dc0095SBarry Smith 0, 955ca3fa75bSLois Curfman McInnes MatGetSubMatrix_MPIDense, 956b9b97703SBarry Smith MatDestroy_MPIDense, 957b9b97703SBarry Smith MatView_MPIDense, 95809dc0095SBarry Smith MatGetMaps_Petsc}; 9598965ea79SLois Curfman McInnes 960273d9f13SBarry Smith EXTERN_C_BEGIN 961273d9f13SBarry Smith #undef __FUNC__ 962*b0a32e0cSBarry Smith #define __FUNC__ "MatCreate_MPIDense" 963273d9f13SBarry Smith int MatCreate_MPIDense(Mat mat) 964273d9f13SBarry Smith { 965273d9f13SBarry Smith Mat_MPIDense *a; 966273d9f13SBarry Smith int ierr,i; 967273d9f13SBarry Smith 968273d9f13SBarry Smith PetscFunctionBegin; 969*b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr); 970*b0a32e0cSBarry Smith mat->data = (void*)a; 971273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 972273d9f13SBarry Smith mat->factor = 0; 973273d9f13SBarry Smith mat->mapping = 0; 974273d9f13SBarry Smith 975273d9f13SBarry Smith a->factor = 0; 976273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 977273d9f13SBarry Smith ierr = MPI_Comm_rank(mat->comm,&a->rank);CHKERRQ(ierr); 978273d9f13SBarry Smith ierr = MPI_Comm_size(mat->comm,&a->size);CHKERRQ(ierr); 979273d9f13SBarry Smith 980273d9f13SBarry Smith ierr = PetscSplitOwnership(mat->comm,&mat->m,&mat->M);CHKERRQ(ierr); 981273d9f13SBarry Smith ierr = PetscSplitOwnership(mat->comm,&mat->n,&mat->N);CHKERRQ(ierr); 982273d9f13SBarry Smith a->nvec = mat->n; 983273d9f13SBarry Smith 984273d9f13SBarry Smith /* the information in the maps duplicates the information computed below, eventually 985273d9f13SBarry Smith we should remove the duplicate information that is not contained in the maps */ 986273d9f13SBarry Smith ierr = MapCreateMPI(mat->comm,mat->m,mat->M,&mat->rmap);CHKERRQ(ierr); 987273d9f13SBarry Smith ierr = MapCreateMPI(mat->comm,mat->n,mat->N,&mat->cmap);CHKERRQ(ierr); 988273d9f13SBarry Smith 989273d9f13SBarry Smith /* build local table of row and column ownerships */ 990*b0a32e0cSBarry Smith ierr = PetscMalloc(2*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 991273d9f13SBarry Smith a->cowners = a->rowners + a->size + 1; 992*b0a32e0cSBarry Smith PetscLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 993273d9f13SBarry Smith ierr = MPI_Allgather(&mat->m,1,MPI_INT,a->rowners+1,1,MPI_INT,mat->comm);CHKERRQ(ierr); 994273d9f13SBarry Smith a->rowners[0] = 0; 995273d9f13SBarry Smith for (i=2; i<=a->size; i++) { 996273d9f13SBarry Smith a->rowners[i] += a->rowners[i-1]; 997273d9f13SBarry Smith } 998273d9f13SBarry Smith a->rstart = a->rowners[a->rank]; 999273d9f13SBarry Smith a->rend = a->rowners[a->rank+1]; 1000273d9f13SBarry Smith ierr = MPI_Allgather(&mat->n,1,MPI_INT,a->cowners+1,1,MPI_INT,mat->comm);CHKERRQ(ierr); 1001273d9f13SBarry Smith a->cowners[0] = 0; 1002273d9f13SBarry Smith for (i=2; i<=a->size; i++) { 1003273d9f13SBarry Smith a->cowners[i] += a->cowners[i-1]; 1004273d9f13SBarry Smith } 1005273d9f13SBarry Smith 1006273d9f13SBarry Smith /* build cache for off array entries formed */ 1007273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 1008273d9f13SBarry Smith ierr = MatStashCreate_Private(mat->comm,1,&mat->stash);CHKERRQ(ierr); 1009273d9f13SBarry Smith 1010273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1011273d9f13SBarry Smith a->lvec = 0; 1012273d9f13SBarry Smith a->Mvctx = 0; 1013273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1014273d9f13SBarry Smith 1015273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1016273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1017273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1018273d9f13SBarry Smith PetscFunctionReturn(0); 1019273d9f13SBarry Smith } 1020273d9f13SBarry Smith EXTERN_C_END 1021273d9f13SBarry Smith 1022273d9f13SBarry Smith #undef __FUNC__ 1023*b0a32e0cSBarry Smith #define __FUNC__ "MatMPIDenseSetPreallocation" 1024273d9f13SBarry Smith /*@C 1025273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1026273d9f13SBarry Smith 1027273d9f13SBarry Smith Not collective 1028273d9f13SBarry Smith 1029273d9f13SBarry Smith Input Parameters: 1030273d9f13SBarry Smith . A - the matrix 1031273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1032273d9f13SBarry Smith to control all matrix memory allocation. 1033273d9f13SBarry Smith 1034273d9f13SBarry Smith Notes: 1035273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1036273d9f13SBarry Smith storage by columns. 1037273d9f13SBarry Smith 1038273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1039273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1040273d9f13SBarry Smith set data=PETSC_NULL. 1041273d9f13SBarry Smith 1042273d9f13SBarry Smith Level: intermediate 1043273d9f13SBarry Smith 1044273d9f13SBarry Smith .keywords: matrix,dense, parallel 1045273d9f13SBarry Smith 1046273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1047273d9f13SBarry Smith @*/ 1048273d9f13SBarry Smith int MatMPIDenseSetPreallocation(Mat mat,Scalar *data) 1049273d9f13SBarry Smith { 1050273d9f13SBarry Smith Mat_MPIDense *a; 1051273d9f13SBarry Smith int ierr; 1052273d9f13SBarry Smith PetscTruth flg2; 1053273d9f13SBarry Smith 1054273d9f13SBarry Smith PetscFunctionBegin; 1055273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)mat,MATMPIDENSE,&flg2);CHKERRQ(ierr); 1056273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1057273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1058273d9f13SBarry Smith /* Note: For now, when data is specified above, this assumes the user correctly 1059273d9f13SBarry Smith allocates the local dense storage space. We should add error checking. */ 1060273d9f13SBarry Smith 1061273d9f13SBarry Smith a = (Mat_MPIDense*)mat->data; 1062273d9f13SBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,mat->m,mat->N,data,&a->A);CHKERRQ(ierr); 1063*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1064273d9f13SBarry Smith PetscFunctionReturn(0); 1065273d9f13SBarry Smith } 1066273d9f13SBarry Smith 10675615d1e5SSatish Balay #undef __FUNC__ 1068*b0a32e0cSBarry Smith #define __FUNC__ "MatCreateMPIDense" 10698965ea79SLois Curfman McInnes /*@C 107039ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 10718965ea79SLois Curfman McInnes 1072db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1073db81eaa0SLois Curfman McInnes 10748965ea79SLois Curfman McInnes Input Parameters: 1075db81eaa0SLois Curfman McInnes + comm - MPI communicator 10768965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1077db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 10788965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1079db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 1080db81eaa0SLois Curfman McInnes - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1081dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 10828965ea79SLois Curfman McInnes 10838965ea79SLois Curfman McInnes Output Parameter: 1084477f1c0bSLois Curfman McInnes . A - the matrix 10858965ea79SLois Curfman McInnes 1086b259b22eSLois Curfman McInnes Notes: 108739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 108839ddd567SLois Curfman McInnes storage by columns. 10898965ea79SLois Curfman McInnes 109018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 109118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1092b4fd4287SBarry Smith set data=PETSC_NULL. 109318f449edSLois Curfman McInnes 10948965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 10958965ea79SLois Curfman McInnes (possibly both). 10968965ea79SLois Curfman McInnes 1097027ccd11SLois Curfman McInnes Level: intermediate 1098027ccd11SLois Curfman McInnes 109939ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 11008965ea79SLois Curfman McInnes 110139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 11028965ea79SLois Curfman McInnes @*/ 1103477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 11048965ea79SLois Curfman McInnes { 1105273d9f13SBarry Smith int ierr,size; 11068965ea79SLois Curfman McInnes 11073a40ed3dSBarry Smith PetscFunctionBegin; 1108273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1109273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1110273d9f13SBarry Smith if (size > 1) { 1111273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1112273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1113273d9f13SBarry Smith } else { 1114273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1115273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 11168c469469SLois Curfman McInnes } 11173a40ed3dSBarry Smith PetscFunctionReturn(0); 11188965ea79SLois Curfman McInnes } 11198965ea79SLois Curfman McInnes 11205615d1e5SSatish Balay #undef __FUNC__ 1121*b0a32e0cSBarry Smith #define __FUNC__ "MatDuplicate_MPIDense" 11225609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 11238965ea79SLois Curfman McInnes { 11248965ea79SLois Curfman McInnes Mat mat; 11253501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 112639ddd567SLois Curfman McInnes int ierr; 11272ba99913SLois Curfman McInnes FactorCtx *factor; 11288965ea79SLois Curfman McInnes 11293a40ed3dSBarry Smith PetscFunctionBegin; 11308965ea79SLois Curfman McInnes *newmat = 0; 1131273d9f13SBarry Smith ierr = MatCreate(A->comm,A->m,A->n,A->M,A->N,&mat);CHKERRQ(ierr); 1132273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIDENSE);CHKERRQ(ierr); 1133*b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr); 1134*b0a32e0cSBarry Smith mat->data = (void*)a; 1135549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 11363501a2bdSLois Curfman McInnes mat->factor = A->factor; 1137c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1138273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 11398965ea79SLois Curfman McInnes 11408965ea79SLois Curfman McInnes a->rstart = oldmat->rstart; 11418965ea79SLois Curfman McInnes a->rend = oldmat->rend; 11428965ea79SLois Curfman McInnes a->size = oldmat->size; 11438965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1144e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1145b9b97703SBarry Smith a->nvec = oldmat->nvec; 11463782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1147*b0a32e0cSBarry Smith ierr = PetscMalloc((a->size+1)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1148*b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 1149549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));CHKERRQ(ierr); 11508798bf22SSatish Balay ierr = MatStashCreate_Private(A->comm,1,&mat->stash);CHKERRQ(ierr); 11518965ea79SLois Curfman McInnes 1152329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 11535609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1154*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 11558965ea79SLois Curfman McInnes *newmat = mat; 11563a40ed3dSBarry Smith PetscFunctionReturn(0); 11578965ea79SLois Curfman McInnes } 11588965ea79SLois Curfman McInnes 1159e090d566SSatish Balay #include "petscsys.h" 11608965ea79SLois Curfman McInnes 11615615d1e5SSatish Balay #undef __FUNC__ 1162*b0a32e0cSBarry Smith #define __FUNC__ "MatLoad_MPIDense_DenseInFile" 116390ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M,int N,Mat *newmat) 116490ace30eSBarry Smith { 116540011551SBarry Smith int *rowners,i,size,rank,m,ierr,nz,j; 116690ace30eSBarry Smith Scalar *array,*vals,*vals_ptr; 116790ace30eSBarry Smith MPI_Status status; 116890ace30eSBarry Smith 11693a40ed3dSBarry Smith PetscFunctionBegin; 1170d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1171d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 117290ace30eSBarry Smith 117390ace30eSBarry Smith /* determine ownership of all rows */ 117490ace30eSBarry Smith m = M/size + ((M % size) > rank); 1175*b0a32e0cSBarry Smith ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 1176ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 117790ace30eSBarry Smith rowners[0] = 0; 117890ace30eSBarry Smith for (i=2; i<=size; i++) { 117990ace30eSBarry Smith rowners[i] += rowners[i-1]; 118090ace30eSBarry Smith } 118190ace30eSBarry Smith 118290ace30eSBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 118390ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 118490ace30eSBarry Smith 118590ace30eSBarry Smith if (!rank) { 1186*b0a32e0cSBarry Smith ierr = PetscMalloc(m*N*sizeof(Scalar),&vals);CHKERRQ(ierr); 118790ace30eSBarry Smith 118890ace30eSBarry Smith /* read in my part of the matrix numerical values */ 11890752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 119090ace30eSBarry Smith 119190ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 119290ace30eSBarry Smith vals_ptr = vals; 119390ace30eSBarry Smith for (i=0; i<m; i++) { 119490ace30eSBarry Smith for (j=0; j<N; j++) { 119590ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 119690ace30eSBarry Smith } 119790ace30eSBarry Smith } 119890ace30eSBarry Smith 119990ace30eSBarry Smith /* read in other processors and ship out */ 120090ace30eSBarry Smith for (i=1; i<size; i++) { 120190ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 12020752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1203ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr); 120490ace30eSBarry Smith } 12053a40ed3dSBarry Smith } else { 120690ace30eSBarry Smith /* receive numeric values */ 1207*b0a32e0cSBarry Smith ierr = PetscMalloc(m*N*sizeof(Scalar),&vals);CHKERRQ(ierr); 120890ace30eSBarry Smith 120990ace30eSBarry Smith /* receive message of values*/ 1210ca161407SBarry Smith ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr); 121190ace30eSBarry Smith 121290ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 121390ace30eSBarry Smith vals_ptr = vals; 121490ace30eSBarry Smith for (i=0; i<m; i++) { 121590ace30eSBarry Smith for (j=0; j<N; j++) { 121690ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 121790ace30eSBarry Smith } 121890ace30eSBarry Smith } 121990ace30eSBarry Smith } 1220606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1221606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 12226d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12236d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 122590ace30eSBarry Smith } 122690ace30eSBarry Smith 1227273d9f13SBarry Smith EXTERN_C_BEGIN 12285615d1e5SSatish Balay #undef __FUNC__ 1229*b0a32e0cSBarry Smith #define __FUNC__ "MatLoad_MPIDense" 1230*b0a32e0cSBarry Smith int MatLoad_MPIDense(PetscViewer viewer,MatType type,Mat *newmat) 12318965ea79SLois Curfman McInnes { 12328965ea79SLois Curfman McInnes Mat A; 12338965ea79SLois Curfman McInnes Scalar *vals,*svals; 123419bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 12358965ea79SLois Curfman McInnes MPI_Status status; 12368965ea79SLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 12378965ea79SLois Curfman McInnes int *ourlens,*sndcounts = 0,*procsnz = 0,*offlens,jj,*mycols,*smycols; 123819bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 12393a40ed3dSBarry Smith int i,nz,ierr,j,rstart,rend,fd; 12408965ea79SLois Curfman McInnes 12413a40ed3dSBarry Smith PetscFunctionBegin; 1242d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1243d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 12448965ea79SLois Curfman McInnes if (!rank) { 1245*b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 12460752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 124729bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 12488965ea79SLois Curfman McInnes } 12498965ea79SLois Curfman McInnes 1250ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 125190ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 125290ace30eSBarry Smith 125390ace30eSBarry Smith /* 125490ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 125590ace30eSBarry Smith */ 125690ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 12573a40ed3dSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 12583a40ed3dSBarry Smith PetscFunctionReturn(0); 125990ace30eSBarry Smith } 126090ace30eSBarry Smith 12618965ea79SLois Curfman McInnes /* determine ownership of all rows */ 12628965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 1263*b0a32e0cSBarry Smith ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 1264ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 12658965ea79SLois Curfman McInnes rowners[0] = 0; 12668965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 12678965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 12688965ea79SLois Curfman McInnes } 12698965ea79SLois Curfman McInnes rstart = rowners[rank]; 12708965ea79SLois Curfman McInnes rend = rowners[rank+1]; 12718965ea79SLois Curfman McInnes 12728965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 1273*b0a32e0cSBarry Smith ierr = PetscMalloc(2*(rend-rstart)*sizeof(int),&ourlens);CHKERRQ(ierr); 12748965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 12758965ea79SLois Curfman McInnes if (!rank) { 1276*b0a32e0cSBarry Smith ierr = PetscMalloc(M*sizeof(int),&rowlengths);CHKERRQ(ierr); 12770752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1278*b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 12798965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 1280ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 1281606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1282ca161407SBarry Smith } else { 1283ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 12848965ea79SLois Curfman McInnes } 12858965ea79SLois Curfman McInnes 12868965ea79SLois Curfman McInnes if (!rank) { 12878965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 1288*b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 1289549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 12908965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 12918965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 12928965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 12938965ea79SLois Curfman McInnes } 12948965ea79SLois Curfman McInnes } 1295606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 12968965ea79SLois Curfman McInnes 12978965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 12988965ea79SLois Curfman McInnes maxnz = 0; 12998965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 13000452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 13018965ea79SLois Curfman McInnes } 1302*b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 13038965ea79SLois Curfman McInnes 13048965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 13058965ea79SLois Curfman McInnes nz = procsnz[0]; 1306*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr); 13070752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 13088965ea79SLois Curfman McInnes 13098965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 13108965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 13118965ea79SLois Curfman McInnes nz = procsnz[i]; 13120752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 1313ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 13148965ea79SLois Curfman McInnes } 1315606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 13163a40ed3dSBarry Smith } else { 13178965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 13188965ea79SLois Curfman McInnes nz = 0; 13198965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13208965ea79SLois Curfman McInnes nz += ourlens[i]; 13218965ea79SLois Curfman McInnes } 1322*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr); 13238965ea79SLois Curfman McInnes 13248965ea79SLois Curfman McInnes /* receive message of column indices*/ 1325ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1326ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 132729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 13288965ea79SLois Curfman McInnes } 13298965ea79SLois Curfman McInnes 13308965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 1331549d3d68SSatish Balay ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr); 13328965ea79SLois Curfman McInnes jj = 0; 13338965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13348965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 13358965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 13368965ea79SLois Curfman McInnes jj++; 13378965ea79SLois Curfman McInnes } 13388965ea79SLois Curfman McInnes } 13398965ea79SLois Curfman McInnes 13408965ea79SLois Curfman McInnes /* create our matrix */ 13418965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13428965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 13438965ea79SLois Curfman McInnes } 1344b4fd4287SBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 13458965ea79SLois Curfman McInnes A = *newmat; 13468965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13478965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 13488965ea79SLois Curfman McInnes } 13498965ea79SLois Curfman McInnes 13508965ea79SLois Curfman McInnes if (!rank) { 1351*b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(Scalar),&vals);CHKERRQ(ierr); 13528965ea79SLois Curfman McInnes 13538965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 13548965ea79SLois Curfman McInnes nz = procsnz[0]; 13550752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 13568965ea79SLois Curfman McInnes 13578965ea79SLois Curfman McInnes /* insert into matrix */ 13588965ea79SLois Curfman McInnes jj = rstart; 13598965ea79SLois Curfman McInnes smycols = mycols; 13608965ea79SLois Curfman McInnes svals = vals; 13618965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13628965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 13638965ea79SLois Curfman McInnes smycols += ourlens[i]; 13648965ea79SLois Curfman McInnes svals += ourlens[i]; 13658965ea79SLois Curfman McInnes jj++; 13668965ea79SLois Curfman McInnes } 13678965ea79SLois Curfman McInnes 13688965ea79SLois Curfman McInnes /* read in other processors and ship out */ 13698965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 13708965ea79SLois Curfman McInnes nz = procsnz[i]; 13710752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1372ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 13738965ea79SLois Curfman McInnes } 1374606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 13753a40ed3dSBarry Smith } else { 13768965ea79SLois Curfman McInnes /* receive numeric values */ 1377*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(Scalar),&vals);CHKERRQ(ierr); 13788965ea79SLois Curfman McInnes 13798965ea79SLois Curfman McInnes /* receive message of values*/ 1380ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1381ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 138229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 13838965ea79SLois Curfman McInnes 13848965ea79SLois Curfman McInnes /* insert into matrix */ 13858965ea79SLois Curfman McInnes jj = rstart; 13868965ea79SLois Curfman McInnes smycols = mycols; 13878965ea79SLois Curfman McInnes svals = vals; 13888965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13898965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 13908965ea79SLois Curfman McInnes smycols += ourlens[i]; 13918965ea79SLois Curfman McInnes svals += ourlens[i]; 13928965ea79SLois Curfman McInnes jj++; 13938965ea79SLois Curfman McInnes } 13948965ea79SLois Curfman McInnes } 1395606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 1396606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 1397606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 1398606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 13998965ea79SLois Curfman McInnes 14006d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14016d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14023a40ed3dSBarry Smith PetscFunctionReturn(0); 14038965ea79SLois Curfman McInnes } 1404273d9f13SBarry Smith EXTERN_C_END 140590ace30eSBarry Smith 140690ace30eSBarry Smith 140790ace30eSBarry Smith 140890ace30eSBarry Smith 140990ace30eSBarry Smith 1410