1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",NULL)); 6092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidensecuda_mpidense_C",NULL)); 6102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 6112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 6122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 6132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 6142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArray_C",NULL)); 6152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayRead_C",NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayWrite_C",NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArray_C",NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayRead_C",NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayWrite_C",NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAPlaceArray_C",NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAResetArray_C",NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAReplaceArray_C",NULL)); 6236718818eSStefano Zampini #endif 6249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 634f8103e6bSStefano Zampini 635f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6363a40ed3dSBarry Smith PetscFunctionReturn(0); 6378965ea79SLois Curfman McInnes } 63839ddd567SLois Curfman McInnes 63952c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 64052c5f739Sprj- 6419804daf3SBarry Smith #include <petscdraw.h> 6426849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6438965ea79SLois Curfman McInnes { 64439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 645616b8fbbSStefano Zampini PetscMPIInt rank; 64619fd82e9SBarry Smith PetscViewerType vtype; 647ace3abfcSBarry Smith PetscBool iascii,isdraw; 648b0a32e0cSBarry Smith PetscViewer sviewer; 649f3ef73ceSBarry Smith PetscViewerFormat format; 6508965ea79SLois Curfman McInnes 6513a40ed3dSBarry Smith PetscFunctionBegin; 6529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 65532077d6dSBarry Smith if (iascii) { 6569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 658456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6594e220ebcSLois Curfman McInnes MatInfo info; 6609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6656f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6663a40ed3dSBarry Smith PetscFunctionReturn(0); 667fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6683a40ed3dSBarry Smith PetscFunctionReturn(0); 6698965ea79SLois Curfman McInnes } 670f1af5d2fSBarry Smith } else if (isdraw) { 671b0a32e0cSBarry Smith PetscDraw draw; 672ace3abfcSBarry Smith PetscBool isnull; 673f1af5d2fSBarry Smith 6749566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6759566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 676f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 677f1af5d2fSBarry Smith } 67877ed5343SBarry Smith 6797da1fb6eSBarry Smith { 6808965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6818965ea79SLois Curfman McInnes Mat A; 682d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 683ba8c8a56SBarry Smith PetscInt *cols; 684ba8c8a56SBarry Smith PetscScalar *vals; 6858965ea79SLois Curfman McInnes 6869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 687dd400576SPatrick Sanan if (rank == 0) { 6889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6893a40ed3dSBarry Smith } else { 6909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6918965ea79SLois Curfman McInnes } 6927adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6949566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6968965ea79SLois Curfman McInnes 69739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69839ddd567SLois Curfman McInnes but it's quick for now */ 69951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7002205254eSKarl Rupp 7012205254eSKarl Rupp row = mat->rmap->rstart; 7022205254eSKarl Rupp m = mdn->A->rmap->n; 7038965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 7049566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 7059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 7069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 70739ddd567SLois Curfman McInnes row++; 7088965ea79SLois Curfman McInnes } 7098965ea79SLois Curfman McInnes 7109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 7119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 713dd400576SPatrick Sanan if (rank == 0) { 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7159566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7168965ea79SLois Curfman McInnes } 7179566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7208965ea79SLois Curfman McInnes } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 7228965ea79SLois Curfman McInnes } 7238965ea79SLois Curfman McInnes 724dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7258965ea79SLois Curfman McInnes { 726ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7278965ea79SLois Curfman McInnes 728433994e6SBarry Smith PetscFunctionBegin; 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7330f5bd95cSBarry Smith 73432077d6dSBarry Smith if (iascii || issocket || isdraw) { 7359566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7361baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat,viewer)); 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7443966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7458965ea79SLois Curfman McInnes 7463a40ed3dSBarry Smith PetscFunctionBegin; 7474e220ebcSLois Curfman McInnes info->block_size = 1.0; 7482205254eSKarl Rupp 7499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7502205254eSKarl Rupp 7514e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7524e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7538965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7544e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7554e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7564e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7574e220ebcSLois Curfman McInnes info->memory = isend[3]; 7584e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7598965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7612205254eSKarl Rupp 7624e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7634e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7644e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7654e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7664e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7678965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7692205254eSKarl Rupp 7704e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7714e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7724e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7734e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7744e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7758965ea79SLois Curfman McInnes } 7764e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7774e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7784e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7793a40ed3dSBarry Smith PetscFunctionReturn(0); 7808965ea79SLois Curfman McInnes } 7818965ea79SLois Curfman McInnes 782ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7838965ea79SLois Curfman McInnes { 78439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7858965ea79SLois Curfman McInnes 7863a40ed3dSBarry Smith PetscFunctionBegin; 78712c028f9SKris Buschelman switch (op) { 788512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79143674050SBarry Smith MatCheckPreallocated(A,1); 7929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79543674050SBarry Smith MatCheckPreallocated(A,1); 7964e0d8c25SBarry Smith a->roworiented = flg; 7979566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79812c028f9SKris Buschelman break; 7998c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 802071fcb05SBarry Smith case MAT_SORTED_FULL: 8039566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80412c028f9SKris Buschelman break; 80512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8064e0d8c25SBarry Smith a->donotstash = flg; 80712c028f9SKris Buschelman break; 80877e54ba9SKris Buschelman case MAT_SYMMETRIC: 80977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8109a4540c5SBarry Smith case MAT_HERMITIAN: 8119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 812*b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 813*b94d7dedSBarry Smith case MAT_SPD: 814600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8155d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 816*b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 817*b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8189566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 81977e54ba9SKris Buschelman break; 82012c028f9SKris Buschelman default: 82198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8223a40ed3dSBarry Smith } 8233a40ed3dSBarry Smith PetscFunctionReturn(0); 8248965ea79SLois Curfman McInnes } 8258965ea79SLois Curfman McInnes 826dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8275b2fa520SLois Curfman McInnes { 8285b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 829637a0070SStefano Zampini const PetscScalar *l; 830637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 831637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8325b2fa520SLois Curfman McInnes 8335b2fa520SLois Curfman McInnes PetscFunctionBegin; 8349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8359566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8369566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8375b2fa520SLois Curfman McInnes if (ll) { 8389566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 83908401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8415b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8425b2fa520SLois Curfman McInnes x = l[i]; 843637a0070SStefano Zampini v = vv + i; 844637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8455b2fa520SLois Curfman McInnes } 8469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8485b2fa520SLois Curfman McInnes } 8495b2fa520SLois Curfman McInnes if (rr) { 850637a0070SStefano Zampini const PetscScalar *ar; 851637a0070SStefano Zampini 8529566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 85308401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8556f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8569566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8605b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8615b2fa520SLois Curfman McInnes x = r[i]; 862637a0070SStefano Zampini v = vv + i*lda; 8632205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8645b2fa520SLois Curfman McInnes } 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8669566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8675b2fa520SLois Curfman McInnes } 8689566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8695b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8705b2fa520SLois Curfman McInnes } 8715b2fa520SLois Curfman McInnes 872dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 873096963f5SLois Curfman McInnes { 8743501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 87513f74950SBarry Smith PetscInt i,j; 876616b8fbbSStefano Zampini PetscMPIInt size; 877329f5518SBarry Smith PetscReal sum = 0.0; 878637a0070SStefano Zampini const PetscScalar *av,*v; 8793501a2bdSLois Curfman McInnes 8803a40ed3dSBarry Smith PetscFunctionBegin; 8819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 882637a0070SStefano Zampini v = av; 8839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 884616b8fbbSStefano Zampini if (size == 1) { 8859566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8863501a2bdSLois Curfman McInnes } else { 8873501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 888d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 889329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8903501a2bdSLois Curfman McInnes } 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8928f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8943a40ed3dSBarry Smith } else if (type == NORM_1) { 895329f5518SBarry Smith PetscReal *tmp,*tmp2; 8969566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 897064f8208SBarry Smith *nrm = 0.0; 898637a0070SStefano Zampini v = av; 899d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 900d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90167e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9023501a2bdSLois Curfman McInnes } 9033501a2bdSLois Curfman McInnes } 9041c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 905d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 906064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9073501a2bdSLois Curfman McInnes } 9089566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 9099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 9103a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 911329f5518SBarry Smith PetscReal ntemp; 9129566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 9131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 914ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9153501a2bdSLois Curfman McInnes } 9169566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9173a40ed3dSBarry Smith PetscFunctionReturn(0); 9183501a2bdSLois Curfman McInnes } 9193501a2bdSLois Curfman McInnes 920fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9213501a2bdSLois Curfman McInnes { 9223501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9233501a2bdSLois Curfman McInnes Mat B; 924d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 925637a0070SStefano Zampini PetscInt j,i,lda; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9309566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9329566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9339566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 934637a0070SStefano Zampini } else B = *matout; 9353501a2bdSLois Curfman McInnes 936637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9403501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9411acff37aSSatish Balay for (j=0; j<n; j++) { 9429566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 943637a0070SStefano Zampini v += lda; 9443501a2bdSLois Curfman McInnes } 9459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9469566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9479566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9489566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 949cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9503501a2bdSLois Curfman McInnes *matout = B; 9513501a2bdSLois Curfman McInnes } else { 9529566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 955096963f5SLois Curfman McInnes } 956096963f5SLois Curfman McInnes 9576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9598965ea79SLois Curfman McInnes 9604994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 961273d9f13SBarry Smith { 962273d9f13SBarry Smith PetscFunctionBegin; 9639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 96518992e5dSStefano Zampini if (!A->preallocated) { 9669566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 96718992e5dSStefano Zampini } 968273d9f13SBarry Smith PetscFunctionReturn(0); 969273d9f13SBarry Smith } 970273d9f13SBarry Smith 971488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 972488007eeSBarry Smith { 973488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 974488007eeSBarry Smith 975488007eeSBarry Smith PetscFunctionBegin; 9769566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 977488007eeSBarry Smith PetscFunctionReturn(0); 978488007eeSBarry Smith } 979488007eeSBarry Smith 9807087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 981ba337c44SJed Brown { 982ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 983ba337c44SJed Brown 984ba337c44SJed Brown PetscFunctionBegin; 9859566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 986ba337c44SJed Brown PetscFunctionReturn(0); 987ba337c44SJed Brown } 988ba337c44SJed Brown 989ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 990ba337c44SJed Brown { 991ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 992ba337c44SJed Brown 993ba337c44SJed Brown PetscFunctionBegin; 9949566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 995ba337c44SJed Brown PetscFunctionReturn(0); 996ba337c44SJed Brown } 997ba337c44SJed Brown 998ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 999ba337c44SJed Brown { 1000ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1001ba337c44SJed Brown 1002ba337c44SJed Brown PetscFunctionBegin; 10039566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 1004ba337c44SJed Brown PetscFunctionReturn(0); 1005ba337c44SJed Brown } 1006ba337c44SJed Brown 100749a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 100849a6ff4bSBarry Smith { 1009637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101049a6ff4bSBarry Smith 101149a6ff4bSBarry Smith PetscFunctionBegin; 101228b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 101328b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 10149566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 101549a6ff4bSBarry Smith PetscFunctionReturn(0); 101649a6ff4bSBarry Smith } 101749a6ff4bSBarry Smith 1018857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 101952c5f739Sprj- 1020857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10210716a85fSBarry Smith { 1022a873a8cdSSam Reynolds PetscInt i,m,n; 10230716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10240716a85fSBarry Smith PetscReal *work; 10250716a85fSBarry Smith 10260716a85fSBarry Smith PetscFunctionBegin; 10279566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1029857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10309566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1031857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10329566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1033a873a8cdSSam Reynolds } else { 10349566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1035a873a8cdSSam Reynolds } 1036857cbf51SRichard Tran Mills if (type == NORM_2) { 10370716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10380716a85fSBarry Smith } 1039857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10410716a85fSBarry Smith } else { 10421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10430716a85fSBarry Smith } 10449566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1045857cbf51SRichard Tran Mills if (type == NORM_2) { 1046a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1047857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1048a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10490716a85fSBarry Smith } 10500716a85fSBarry Smith PetscFunctionReturn(0); 10510716a85fSBarry Smith } 10520716a85fSBarry Smith 1053637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1054126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1055126e4e93SJose E. Roman { 1056126e4e93SJose E. Roman PetscScalar *da; 1057126e4e93SJose E. Roman PetscInt lda; 1058126e4e93SJose E. Roman 1059126e4e93SJose E. Roman PetscFunctionBegin; 1060126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1061126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1062126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1063126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1064126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1065126e4e93SJose E. Roman PetscFunctionReturn(0); 1066126e4e93SJose E. Roman } 1067126e4e93SJose E. Roman 10686947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10696947451fSStefano Zampini { 10706947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10716947451fSStefano Zampini PetscInt lda; 10726947451fSStefano Zampini 10736947451fSStefano Zampini PetscFunctionBegin; 107428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 107528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10766947451fSStefano Zampini if (!a->cvec) { 10779566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10789566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10796947451fSStefano Zampini } 10806947451fSStefano Zampini a->vecinuse = col + 1; 10819566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10829566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10839566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10846947451fSStefano Zampini *v = a->cvec; 10856947451fSStefano Zampini PetscFunctionReturn(0); 10866947451fSStefano Zampini } 10876947451fSStefano Zampini 10886947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10896947451fSStefano Zampini { 10906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10916947451fSStefano Zampini 10926947451fSStefano Zampini PetscFunctionBegin; 109328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 109428b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10956947451fSStefano Zampini a->vecinuse = 0; 10969566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10979566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10986947451fSStefano Zampini *v = NULL; 10996947451fSStefano Zampini PetscFunctionReturn(0); 11006947451fSStefano Zampini } 11016947451fSStefano Zampini 11026947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11036947451fSStefano Zampini { 11046947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11056947451fSStefano Zampini PetscInt lda; 11066947451fSStefano Zampini 11076947451fSStefano Zampini PetscFunctionBegin; 110828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 110928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11106947451fSStefano Zampini if (!a->cvec) { 11119566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11129566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11136947451fSStefano Zampini } 11146947451fSStefano Zampini a->vecinuse = col + 1; 11159566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11169566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11179566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11189566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11196947451fSStefano Zampini *v = a->cvec; 11206947451fSStefano Zampini PetscFunctionReturn(0); 11216947451fSStefano Zampini } 11226947451fSStefano Zampini 11236947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11246947451fSStefano Zampini { 11256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11266947451fSStefano Zampini 11276947451fSStefano Zampini PetscFunctionBegin; 112828b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 112928b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11306947451fSStefano Zampini a->vecinuse = 0; 11319566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11329566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11339566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11346947451fSStefano Zampini *v = NULL; 11356947451fSStefano Zampini PetscFunctionReturn(0); 11366947451fSStefano Zampini } 11376947451fSStefano Zampini 11386947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11396947451fSStefano Zampini { 11406947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11416947451fSStefano Zampini PetscInt lda; 11426947451fSStefano Zampini 11436947451fSStefano Zampini PetscFunctionBegin; 114428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11466947451fSStefano Zampini if (!a->cvec) { 11479566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11489566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11496947451fSStefano Zampini } 11506947451fSStefano Zampini a->vecinuse = col + 1; 11519566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11529566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11539566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11546947451fSStefano Zampini *v = a->cvec; 11556947451fSStefano Zampini PetscFunctionReturn(0); 11566947451fSStefano Zampini } 11576947451fSStefano Zampini 11586947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11596947451fSStefano Zampini { 11606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11616947451fSStefano Zampini 11626947451fSStefano Zampini PetscFunctionBegin; 116328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 116428b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11656947451fSStefano Zampini a->vecinuse = 0; 11669566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11679566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11686947451fSStefano Zampini *v = NULL; 11696947451fSStefano Zampini PetscFunctionReturn(0); 11706947451fSStefano Zampini } 11716947451fSStefano Zampini 1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1173637a0070SStefano Zampini { 1174637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1175637a0070SStefano Zampini 1176637a0070SStefano Zampini PetscFunctionBegin; 117728b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117828b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11799566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1180637a0070SStefano Zampini PetscFunctionReturn(0); 1181637a0070SStefano Zampini } 1182637a0070SStefano Zampini 1183637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1184637a0070SStefano Zampini { 1185637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1186637a0070SStefano Zampini 1187637a0070SStefano Zampini PetscFunctionBegin; 118828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11909566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1191637a0070SStefano Zampini PetscFunctionReturn(0); 1192637a0070SStefano Zampini } 1193637a0070SStefano Zampini 1194d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1195d5ea218eSStefano Zampini { 1196d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1197d5ea218eSStefano Zampini 1198d5ea218eSStefano Zampini PetscFunctionBegin; 119928b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 120028b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 12019566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1202d5ea218eSStefano Zampini PetscFunctionReturn(0); 1203d5ea218eSStefano Zampini } 1204d5ea218eSStefano Zampini 1205637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1206637a0070SStefano Zampini { 1207637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1208637a0070SStefano Zampini 1209637a0070SStefano Zampini PetscFunctionBegin; 12109566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1211637a0070SStefano Zampini PetscFunctionReturn(0); 1212637a0070SStefano Zampini } 1213637a0070SStefano Zampini 1214637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1215637a0070SStefano Zampini { 1216637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1217637a0070SStefano Zampini 1218637a0070SStefano Zampini PetscFunctionBegin; 12199566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1220637a0070SStefano Zampini PetscFunctionReturn(0); 1221637a0070SStefano Zampini } 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1224637a0070SStefano Zampini { 1225637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1226637a0070SStefano Zampini 1227637a0070SStefano Zampini PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1229637a0070SStefano Zampini PetscFunctionReturn(0); 1230637a0070SStefano Zampini } 1231637a0070SStefano Zampini 1232637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1233637a0070SStefano Zampini { 1234637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1235637a0070SStefano Zampini 1236637a0070SStefano Zampini PetscFunctionBegin; 12379566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1238637a0070SStefano Zampini PetscFunctionReturn(0); 1239637a0070SStefano Zampini } 1240637a0070SStefano Zampini 1241637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1242637a0070SStefano Zampini { 1243637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1244637a0070SStefano Zampini 1245637a0070SStefano Zampini PetscFunctionBegin; 12469566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1247637a0070SStefano Zampini PetscFunctionReturn(0); 1248637a0070SStefano Zampini } 1249637a0070SStefano Zampini 1250637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1251637a0070SStefano Zampini { 1252637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1253637a0070SStefano Zampini 1254637a0070SStefano Zampini PetscFunctionBegin; 12559566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1256637a0070SStefano Zampini PetscFunctionReturn(0); 1257637a0070SStefano Zampini } 1258637a0070SStefano Zampini 12596947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12606947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12616947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12626947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12636947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12646947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12655ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12666947451fSStefano Zampini 1267637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1268637a0070SStefano Zampini { 1269637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1270637a0070SStefano Zampini 1271637a0070SStefano Zampini PetscFunctionBegin; 127228b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 127328b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 12741baa6e33SBarry Smith if (d->A) PetscCall(MatBindToCPU(d->A,bind)); 1275637a0070SStefano Zampini mat->boundtocpu = bind; 12766947451fSStefano Zampini if (!bind) { 12776947451fSStefano Zampini PetscBool iscuda; 12786947451fSStefano Zampini 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12806947451fSStefano Zampini if (!iscuda) { 12819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1282616b8fbbSStefano Zampini } 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1284616b8fbbSStefano Zampini if (!iscuda) { 12859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12866947451fSStefano Zampini } 12879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1293126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12946947451fSStefano Zampini } else { 12959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 13009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1301126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1302616b8fbbSStefano Zampini } 13031baa6e33SBarry Smith if (d->cmat) PetscCall(MatBindToCPU(d->cmat,bind)); 1304637a0070SStefano Zampini PetscFunctionReturn(0); 1305637a0070SStefano Zampini } 1306637a0070SStefano Zampini 1307637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1308637a0070SStefano Zampini { 1309637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1310637a0070SStefano Zampini PetscBool iscuda; 1311637a0070SStefano Zampini 1312637a0070SStefano Zampini PetscFunctionBegin; 1313d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1315637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1318637a0070SStefano Zampini if (!d->A) { 13199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13209566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1322637a0070SStefano Zampini } 13239566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13249566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1325637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13266f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1327637a0070SStefano Zampini PetscFunctionReturn(0); 1328637a0070SStefano Zampini } 1329637a0070SStefano Zampini #endif 1330637a0070SStefano Zampini 133173a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 133273a71a0fSBarry Smith { 133373a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133473a71a0fSBarry Smith 133573a71a0fSBarry Smith PetscFunctionBegin; 13369566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 133773a71a0fSBarry Smith PetscFunctionReturn(0); 133873a71a0fSBarry Smith } 133973a71a0fSBarry Smith 13403b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13413b49f96aSBarry Smith { 13423b49f96aSBarry Smith PetscFunctionBegin; 13433b49f96aSBarry Smith *missing = PETSC_FALSE; 13443b49f96aSBarry Smith PetscFunctionReturn(0); 13453b49f96aSBarry Smith } 13463b49f96aSBarry Smith 13474222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1348cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13496718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1350a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13516718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13526718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1353cc48ffa7SToby Isaac 13548965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135609dc0095SBarry Smith MatGetRow_MPIDense, 135709dc0095SBarry Smith MatRestoreRow_MPIDense, 135809dc0095SBarry Smith MatMult_MPIDense, 135997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13607c922b88SBarry Smith MatMultTranspose_MPIDense, 13617c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 1365f4259b30SLisandro Dalcin /* 10*/ NULL, 1366f4259b30SLisandro Dalcin NULL, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 136909dc0095SBarry Smith MatTranspose_MPIDense, 137097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13716e4ee0c6SHong Zhang MatEqual_MPIDense, 137209dc0095SBarry Smith MatGetDiagonal_MPIDense, 13735b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137409dc0095SBarry Smith MatNorm_MPIDense, 137597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137709dc0095SBarry Smith MatSetOption_MPIDense, 137809dc0095SBarry Smith MatZeroEntries_MPIDense, 1379d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1380f4259b30SLisandro Dalcin NULL, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383f4259b30SLisandro Dalcin NULL, 13844994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1385f4259b30SLisandro Dalcin NULL, 1386f4259b30SLisandro Dalcin NULL, 1387c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1388f4259b30SLisandro Dalcin NULL, 1389d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13957dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1396f4259b30SLisandro Dalcin NULL, 139709dc0095SBarry Smith MatGetValues_MPIDense, 1398a76f77c3SStefano Zampini MatCopy_MPIDense, 1399f4259b30SLisandro Dalcin /* 44*/ NULL, 140009dc0095SBarry Smith MatScale_MPIDense, 14012f605a99SJose E. Roman MatShift_MPIDense, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 140473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin /* 54*/ NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 14147dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1415b9b97703SBarry Smith MatDestroy_MPIDense, 1416b9b97703SBarry Smith MatView_MPIDense, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin /* 64*/ NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin /* 69*/ NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin /* 74*/ NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin /* 79*/ NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 14385bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin /* 89*/ NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin /* 94*/ NULL, 1450f4259b30SLisandro Dalcin NULL, 14516718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1452cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1453f4259b30SLisandro Dalcin NULL, 14544222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1455f4259b30SLisandro Dalcin NULL, 1456f4259b30SLisandro Dalcin NULL, 1457ba337c44SJed Brown MatConjugate_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin /*104*/ NULL, 1460ba337c44SJed Brown MatRealPart_MPIDense, 1461ba337c44SJed Brown MatImaginaryPart_MPIDense, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin /*109*/ NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin NULL, 146749a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14683b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1469f4259b30SLisandro Dalcin /*114*/ NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin /*119*/ NULL, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin /*124*/ NULL, 1480a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1481f4259b30SLisandro Dalcin NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin /*129*/ NULL, 1485f4259b30SLisandro Dalcin NULL, 14866718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1487cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin /*134*/ NULL, 1490f4259b30SLisandro Dalcin NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin /*139*/ NULL, 1495f4259b30SLisandro Dalcin NULL, 1496f4259b30SLisandro Dalcin NULL, 1497f4259b30SLisandro Dalcin NULL, 1498f4259b30SLisandro Dalcin NULL, 14994222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1500f4259b30SLisandro Dalcin /*145*/ NULL, 1501f4259b30SLisandro Dalcin NULL, 150299a7f59eSMark Adams NULL, 150399a7f59eSMark Adams NULL, 1504f4259b30SLisandro Dalcin NULL 1505ba337c44SJed Brown }; 15068965ea79SLois Curfman McInnes 15077087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1508a23d5eceSKris Buschelman { 1509637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1510637a0070SStefano Zampini PetscBool iscuda; 1511a23d5eceSKris Buschelman 1512a23d5eceSKris Buschelman PetscFunctionBegin; 151328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 15149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15159566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1516637a0070SStefano Zampini if (!a->A) { 15179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15189566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1520637a0070SStefano Zampini } 15219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15229566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15239566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1524637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15256f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1526a23d5eceSKris Buschelman PetscFunctionReturn(0); 1527a23d5eceSKris Buschelman } 1528a23d5eceSKris Buschelman 15294e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15304e29119aSPierre Jolivet { 15314e29119aSPierre Jolivet Mat B,C; 15324e29119aSPierre Jolivet 15334e29119aSPierre Jolivet PetscFunctionBegin; 15349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15359566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15374e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15384e29119aSPierre Jolivet C = *newmat; 15394e29119aSPierre Jolivet } else C = NULL; 15409566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15424e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15439566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15444e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15454e29119aSPierre Jolivet PetscFunctionReturn(0); 15464e29119aSPierre Jolivet } 15474e29119aSPierre Jolivet 15484e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15494e29119aSPierre Jolivet { 15504e29119aSPierre Jolivet Mat B,C; 15514e29119aSPierre Jolivet 15524e29119aSPierre Jolivet PetscFunctionBegin; 15539566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15549566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15554e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15564e29119aSPierre Jolivet C = *newmat; 15574e29119aSPierre Jolivet } else C = NULL; 15589566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15604e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15619566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15624e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15634e29119aSPierre Jolivet PetscFunctionReturn(0); 15644e29119aSPierre Jolivet } 15654e29119aSPierre Jolivet 156665b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1567cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15688baccfbdSHong Zhang { 15698ea901baSHong Zhang Mat mat_elemental; 157032d7a744SHong Zhang PetscScalar *v; 157132d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15728ea901baSHong Zhang 15738baccfbdSHong Zhang PetscFunctionBegin; 1574378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1575378336b6SHong Zhang mat_elemental = *newmat; 15769566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1577378336b6SHong Zhang } else { 15789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15809566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15819566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15829566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1583378336b6SHong Zhang } 1584378336b6SHong Zhang 15859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 158632d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 158732d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15888ea901baSHong Zhang 1589637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15909566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15919566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15968ea901baSHong Zhang 1597511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15989566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15998ea901baSHong Zhang } else { 16008ea901baSHong Zhang *newmat = mat_elemental; 16018ea901baSHong Zhang } 16028baccfbdSHong Zhang PetscFunctionReturn(0); 16038baccfbdSHong Zhang } 160465b80a83SHong Zhang #endif 16058baccfbdSHong Zhang 1606af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 160786aefd0dSHong Zhang { 160886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160986aefd0dSHong Zhang 161086aefd0dSHong Zhang PetscFunctionBegin; 16119566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 161286aefd0dSHong Zhang PetscFunctionReturn(0); 161386aefd0dSHong Zhang } 161486aefd0dSHong Zhang 1615af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 161686aefd0dSHong Zhang { 161786aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 161886aefd0dSHong Zhang 161986aefd0dSHong Zhang PetscFunctionBegin; 16209566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 162186aefd0dSHong Zhang PetscFunctionReturn(0); 162286aefd0dSHong Zhang } 162386aefd0dSHong Zhang 162494e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 162594e2cb23SJakub Kruzik { 162694e2cb23SJakub Kruzik Mat_MPIDense *mat; 162794e2cb23SJakub Kruzik PetscInt m,nloc,N; 162894e2cb23SJakub Kruzik 162994e2cb23SJakub Kruzik PetscFunctionBegin; 16309566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16319566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 163294e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 163394e2cb23SJakub Kruzik PetscInt sum; 163494e2cb23SJakub Kruzik 163594e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16369566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 163794e2cb23SJakub Kruzik } 163894e2cb23SJakub Kruzik /* Check sum(n) = N */ 16391c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 164008401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 164194e2cb23SJakub Kruzik 16429566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16439566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 164494e2cb23SJakub Kruzik } 164594e2cb23SJakub Kruzik 164694e2cb23SJakub Kruzik /* numeric phase */ 164794e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16489566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 164994e2cb23SJakub Kruzik PetscFunctionReturn(0); 165094e2cb23SJakub Kruzik } 165194e2cb23SJakub Kruzik 1652637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1653637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1654637a0070SStefano Zampini { 1655637a0070SStefano Zampini Mat B; 1656637a0070SStefano Zampini Mat_MPIDense *m; 1657637a0070SStefano Zampini 1658637a0070SStefano Zampini PetscFunctionBegin; 1659637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16609566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1661637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16629566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1663637a0070SStefano Zampini } 1664637a0070SStefano Zampini 1665637a0070SStefano Zampini B = *newmat; 16669566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16679566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16689566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1684637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1685637a0070SStefano Zampini if (m->A) { 16869566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1687637a0070SStefano Zampini } 1688637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1689637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1690637a0070SStefano Zampini PetscFunctionReturn(0); 1691637a0070SStefano Zampini } 1692637a0070SStefano Zampini 1693637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1694637a0070SStefano Zampini { 1695637a0070SStefano Zampini Mat B; 1696637a0070SStefano Zampini Mat_MPIDense *m; 1697637a0070SStefano Zampini 1698637a0070SStefano Zampini PetscFunctionBegin; 1699637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 17009566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1701637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 17029566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1703637a0070SStefano Zampini } 1704637a0070SStefano Zampini 1705637a0070SStefano Zampini B = *newmat; 17069566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17079566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 17089566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 17099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 17109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 17149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1723f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1724637a0070SStefano Zampini if (m->A) { 17259566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1726637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1727637a0070SStefano Zampini } else { 1728637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1729637a0070SStefano Zampini } 17309566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1731637a0070SStefano Zampini 1732637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1733637a0070SStefano Zampini PetscFunctionReturn(0); 1734637a0070SStefano Zampini } 1735637a0070SStefano Zampini #endif 1736637a0070SStefano Zampini 17376947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17386947451fSStefano Zampini { 17396947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17406947451fSStefano Zampini PetscInt lda; 17416947451fSStefano Zampini 17426947451fSStefano Zampini PetscFunctionBegin; 174328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 174428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17456947451fSStefano Zampini if (!a->cvec) { 17469566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17476947451fSStefano Zampini } 17486947451fSStefano Zampini a->vecinuse = col + 1; 17499566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17519566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17526947451fSStefano Zampini *v = a->cvec; 17536947451fSStefano Zampini PetscFunctionReturn(0); 17546947451fSStefano Zampini } 17556947451fSStefano Zampini 17566947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17576947451fSStefano Zampini { 17586947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17596947451fSStefano Zampini 17606947451fSStefano Zampini PetscFunctionBegin; 176128b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 176228b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17636947451fSStefano Zampini a->vecinuse = 0; 17649566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17659566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17666947451fSStefano Zampini *v = NULL; 17676947451fSStefano Zampini PetscFunctionReturn(0); 17686947451fSStefano Zampini } 17696947451fSStefano Zampini 17706947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17716947451fSStefano Zampini { 17726947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17736947451fSStefano Zampini PetscInt lda; 17746947451fSStefano Zampini 17756947451fSStefano Zampini PetscFunctionBegin; 177628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 177728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17786947451fSStefano Zampini if (!a->cvec) { 17799566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17806947451fSStefano Zampini } 17816947451fSStefano Zampini a->vecinuse = col + 1; 17829566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17849566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17859566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17866947451fSStefano Zampini *v = a->cvec; 17876947451fSStefano Zampini PetscFunctionReturn(0); 17886947451fSStefano Zampini } 17896947451fSStefano Zampini 17906947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17916947451fSStefano Zampini { 17926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17936947451fSStefano Zampini 17946947451fSStefano Zampini PetscFunctionBegin; 17955f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17965f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17976947451fSStefano Zampini a->vecinuse = 0; 17989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17999566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 18009566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18016947451fSStefano Zampini *v = NULL; 18026947451fSStefano Zampini PetscFunctionReturn(0); 18036947451fSStefano Zampini } 18046947451fSStefano Zampini 18056947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18066947451fSStefano Zampini { 18076947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18086947451fSStefano Zampini PetscInt lda; 18096947451fSStefano Zampini 18106947451fSStefano Zampini PetscFunctionBegin; 18115f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18125f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18136947451fSStefano Zampini if (!a->cvec) { 18149566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18156947451fSStefano Zampini } 18166947451fSStefano Zampini a->vecinuse = col + 1; 18179566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18199566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18206947451fSStefano Zampini *v = a->cvec; 18216947451fSStefano Zampini PetscFunctionReturn(0); 18226947451fSStefano Zampini } 18236947451fSStefano Zampini 18246947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18256947451fSStefano Zampini { 18266947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18276947451fSStefano Zampini 18286947451fSStefano Zampini PetscFunctionBegin; 18295f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18305f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18316947451fSStefano Zampini a->vecinuse = 0; 18329566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18339566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18346947451fSStefano Zampini *v = NULL; 18356947451fSStefano Zampini PetscFunctionReturn(0); 18366947451fSStefano Zampini } 18376947451fSStefano Zampini 1838a2748737SPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt rbegin,PetscInt rend,PetscInt cbegin,PetscInt cend,Mat *v) 18395ea7661aSPierre Jolivet { 18405ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1841616b8fbbSStefano Zampini Mat_MPIDense *c; 1842616b8fbbSStefano Zampini MPI_Comm comm; 1843a2748737SPierre Jolivet PetscInt pbegin, pend; 18445ea7661aSPierre Jolivet 18455ea7661aSPierre Jolivet PetscFunctionBegin; 18469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18475f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18485f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1849a2748737SPierre Jolivet pbegin = PetscMax(0,PetscMin(A->rmap->rend,rbegin)-A->rmap->rstart); 1850a2748737SPierre Jolivet pend = PetscMin(A->rmap->n,PetscMax(0,rend-A->rmap->rstart)); 18515ea7661aSPierre Jolivet if (!a->cmat) { 18529566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18539566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18549566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 1855a2748737SPierre Jolivet if (rend-rbegin==A->rmap->N) PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 1856a2748737SPierre Jolivet else { 1857a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1858a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1859a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1860a2748737SPierre Jolivet } 18619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1863a2748737SPierre Jolivet } else { 1864a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend-rbegin == a->cmat->rmap->N); 1865a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1866a2748737SPierre Jolivet same = (PetscBool)(pend-pbegin == a->cmat->rmap->n); 1867a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,&same,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1868a2748737SPierre Jolivet } 1869a2748737SPierre Jolivet if (!same) { 1870a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1871a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm,&a->cmat->rmap)); 1872a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1873a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1874a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1875a2748737SPierre Jolivet } 1876a2748737SPierre Jolivet if (cend-cbegin != a->cmat->cmap->N) { 18779566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18789566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18815ea7661aSPierre Jolivet } 1882a2748737SPierre Jolivet } 1883616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18845f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1885a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A,pbegin,pend,cbegin,cend,&c->A)); 1886616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1887616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18885ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18895ea7661aSPierre Jolivet *v = a->cmat; 18905ea7661aSPierre Jolivet PetscFunctionReturn(0); 18915ea7661aSPierre Jolivet } 18925ea7661aSPierre Jolivet 18935ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18945ea7661aSPierre Jolivet { 18955ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1896616b8fbbSStefano Zampini Mat_MPIDense *c; 18975ea7661aSPierre Jolivet 18985ea7661aSPierre Jolivet PetscFunctionBegin; 18995f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 19005f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 19015f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 19025ea7661aSPierre Jolivet a->matinuse = 0; 1903616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 19049566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 19055ea7661aSPierre Jolivet *v = NULL; 19065ea7661aSPierre Jolivet PetscFunctionReturn(0); 19075ea7661aSPierre Jolivet } 19085ea7661aSPierre Jolivet 1909002bc6daSRichard Tran Mills /*MC 1910002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1911002bc6daSRichard Tran Mills 1912002bc6daSRichard Tran Mills Options Database Keys: 1913002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1914002bc6daSRichard Tran Mills 1915002bc6daSRichard Tran Mills Level: beginner 1916002bc6daSRichard Tran Mills 1917db781477SPatrick Sanan .seealso: `MatCreateDense()` 1918002bc6daSRichard Tran Mills 1919002bc6daSRichard Tran Mills M*/ 19208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1921273d9f13SBarry Smith { 1922273d9f13SBarry Smith Mat_MPIDense *a; 1923273d9f13SBarry Smith 1924273d9f13SBarry Smith PetscFunctionBegin; 19259566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1926b0a32e0cSBarry Smith mat->data = (void*)a; 19279566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1928273d9f13SBarry Smith 1929273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1930273d9f13SBarry Smith 1931273d9f13SBarry Smith /* build cache for off array entries formed */ 1932273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19332205254eSKarl Rupp 19349566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1935273d9f13SBarry Smith 1936273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1937f4259b30SLisandro Dalcin a->lvec = NULL; 1938f4259b30SLisandro Dalcin a->Mvctx = NULL; 1939273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1940273d9f13SBarry Smith 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19628baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19648baccfbdSHong Zhang #endif 1965d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1967d24d4204SJose E. Roman #endif 1968637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1970637a0070SStefano Zampini #endif 19719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19746718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19776718818eSStefano Zampini #endif 19788949adfdSHong Zhang 19799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1982273d9f13SBarry Smith PetscFunctionReturn(0); 1983273d9f13SBarry Smith } 1984273d9f13SBarry Smith 1985209238afSKris Buschelman /*MC 1986637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1987637a0070SStefano Zampini 1988637a0070SStefano Zampini Options Database Keys: 1989637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1990637a0070SStefano Zampini 1991637a0070SStefano Zampini Level: beginner 1992637a0070SStefano Zampini 1993637a0070SStefano Zampini .seealso: 1994637a0070SStefano Zampini 1995637a0070SStefano Zampini M*/ 1996637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1997a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1998637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1999637a0070SStefano Zampini { 2000637a0070SStefano Zampini PetscFunctionBegin; 20019566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 20029566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 20039566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 2004637a0070SStefano Zampini PetscFunctionReturn(0); 2005637a0070SStefano Zampini } 2006637a0070SStefano Zampini #endif 2007637a0070SStefano Zampini 2008637a0070SStefano Zampini /*MC 2009002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2010209238afSKris Buschelman 2011209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2012209238afSKris Buschelman and MATMPIDENSE otherwise. 2013209238afSKris Buschelman 2014209238afSKris Buschelman Options Database Keys: 2015209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2016209238afSKris Buschelman 2017209238afSKris Buschelman Level: beginner 2018209238afSKris Buschelman 2019c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20206947451fSStefano Zampini M*/ 20216947451fSStefano Zampini 20226947451fSStefano Zampini /*MC 20236947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20246947451fSStefano Zampini 20256947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20266947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20276947451fSStefano Zampini 20286947451fSStefano Zampini Options Database Keys: 20296947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20306947451fSStefano Zampini 20316947451fSStefano Zampini Level: beginner 20326947451fSStefano Zampini 2033c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2034209238afSKris Buschelman M*/ 2035209238afSKris Buschelman 2036273d9f13SBarry Smith /*@C 2037273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2038273d9f13SBarry Smith 20398f490ea3SStefano Zampini Collective 2040273d9f13SBarry Smith 2041273d9f13SBarry Smith Input Parameters: 20421c4f3114SJed Brown . B - the matrix 20430298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2044273d9f13SBarry Smith to control all matrix memory allocation. 2045273d9f13SBarry Smith 2046273d9f13SBarry Smith Notes: 2047273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2048273d9f13SBarry Smith storage by columns. 2049273d9f13SBarry Smith 2050273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2051273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20520298fd71SBarry Smith set data=NULL. 2053273d9f13SBarry Smith 2054273d9f13SBarry Smith Level: intermediate 2055273d9f13SBarry Smith 2056db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2057273d9f13SBarry Smith @*/ 20581c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2059273d9f13SBarry Smith { 2060273d9f13SBarry Smith PetscFunctionBegin; 2061d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2062cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2063273d9f13SBarry Smith PetscFunctionReturn(0); 2064273d9f13SBarry Smith } 2065273d9f13SBarry Smith 2066d3042a70SBarry Smith /*@ 2067637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2068d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2069d3042a70SBarry Smith into a matrix 2070d3042a70SBarry Smith 2071d3042a70SBarry Smith Not Collective 2072d3042a70SBarry Smith 2073d3042a70SBarry Smith Input Parameters: 2074d3042a70SBarry Smith + mat - the matrix 2075d3042a70SBarry Smith - array - the array in column major order 2076d3042a70SBarry Smith 2077d3042a70SBarry Smith Notes: 2078d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2079d3042a70SBarry Smith freed when the matrix is destroyed. 2080d3042a70SBarry Smith 2081d3042a70SBarry Smith Level: developer 2082d3042a70SBarry Smith 2083db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2084d3042a70SBarry Smith 2085d3042a70SBarry Smith @*/ 2086637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2087d3042a70SBarry Smith { 2088d3042a70SBarry Smith PetscFunctionBegin; 2089d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2090cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20919566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2092637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2093637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2094637a0070SStefano Zampini #endif 2095d3042a70SBarry Smith PetscFunctionReturn(0); 2096d3042a70SBarry Smith } 2097d3042a70SBarry Smith 2098d3042a70SBarry Smith /*@ 2099d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2100d3042a70SBarry Smith 2101d3042a70SBarry Smith Not Collective 2102d3042a70SBarry Smith 2103d3042a70SBarry Smith Input Parameters: 2104d3042a70SBarry Smith . mat - the matrix 2105d3042a70SBarry Smith 2106d3042a70SBarry Smith Notes: 2107d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2108d3042a70SBarry Smith 2109d3042a70SBarry Smith Level: developer 2110d3042a70SBarry Smith 2111db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2112d3042a70SBarry Smith 2113d3042a70SBarry Smith @*/ 2114d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2115d3042a70SBarry Smith { 2116d3042a70SBarry Smith PetscFunctionBegin; 2117d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2118cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 21199566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2120d3042a70SBarry Smith PetscFunctionReturn(0); 2121d3042a70SBarry Smith } 2122d3042a70SBarry Smith 2123d5ea218eSStefano Zampini /*@ 2124d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2125d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2126d5ea218eSStefano Zampini into a matrix 2127d5ea218eSStefano Zampini 2128d5ea218eSStefano Zampini Not Collective 2129d5ea218eSStefano Zampini 2130d5ea218eSStefano Zampini Input Parameters: 2131d5ea218eSStefano Zampini + mat - the matrix 2132d5ea218eSStefano Zampini - array - the array in column major order 2133d5ea218eSStefano Zampini 2134d5ea218eSStefano Zampini Notes: 2135d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2136d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2137d5ea218eSStefano Zampini 2138d5ea218eSStefano Zampini Level: developer 2139d5ea218eSStefano Zampini 2140db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2141d5ea218eSStefano Zampini @*/ 2142d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2143d5ea218eSStefano Zampini { 2144d5ea218eSStefano Zampini PetscFunctionBegin; 2145d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2146cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2148d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2149d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2150d5ea218eSStefano Zampini #endif 2151d5ea218eSStefano Zampini PetscFunctionReturn(0); 2152d5ea218eSStefano Zampini } 2153d5ea218eSStefano Zampini 2154637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21558965ea79SLois Curfman McInnes /*@C 2156637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2157637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2158637a0070SStefano Zampini into a matrix 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini Not Collective 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini Input Parameters: 2163637a0070SStefano Zampini + mat - the matrix 2164637a0070SStefano Zampini - array - the array in column major order 2165637a0070SStefano Zampini 2166637a0070SStefano Zampini Notes: 2167637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2168637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2169637a0070SStefano Zampini 2170637a0070SStefano Zampini Level: developer 2171637a0070SStefano Zampini 2172db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2173637a0070SStefano Zampini @*/ 2174637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2175637a0070SStefano Zampini { 2176637a0070SStefano Zampini PetscFunctionBegin; 2177d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2178cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21799566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2180637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2181637a0070SStefano Zampini PetscFunctionReturn(0); 2182637a0070SStefano Zampini } 2183637a0070SStefano Zampini 2184637a0070SStefano Zampini /*@C 2185637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2186637a0070SStefano Zampini 2187637a0070SStefano Zampini Not Collective 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Input Parameters: 2190637a0070SStefano Zampini . mat - the matrix 2191637a0070SStefano Zampini 2192637a0070SStefano Zampini Notes: 2193637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2194637a0070SStefano Zampini 2195637a0070SStefano Zampini Level: developer 2196637a0070SStefano Zampini 2197db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini @*/ 2200637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2201637a0070SStefano Zampini { 2202637a0070SStefano Zampini PetscFunctionBegin; 2203d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2204cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 22059566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2206637a0070SStefano Zampini PetscFunctionReturn(0); 2207637a0070SStefano Zampini } 2208637a0070SStefano Zampini 2209637a0070SStefano Zampini /*@C 2210d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2211d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2212d5ea218eSStefano Zampini into a matrix 2213d5ea218eSStefano Zampini 2214d5ea218eSStefano Zampini Not Collective 2215d5ea218eSStefano Zampini 2216d5ea218eSStefano Zampini Input Parameters: 2217d5ea218eSStefano Zampini + mat - the matrix 2218d5ea218eSStefano Zampini - array - the array in column major order 2219d5ea218eSStefano Zampini 2220d5ea218eSStefano Zampini Notes: 2221d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2222d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2223d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2224d5ea218eSStefano Zampini 2225d5ea218eSStefano Zampini Level: developer 2226d5ea218eSStefano Zampini 2227db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2228d5ea218eSStefano Zampini @*/ 2229d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2230d5ea218eSStefano Zampini { 2231d5ea218eSStefano Zampini PetscFunctionBegin; 2232d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2233cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 22349566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2235d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2236d5ea218eSStefano Zampini PetscFunctionReturn(0); 2237d5ea218eSStefano Zampini } 2238d5ea218eSStefano Zampini 2239d5ea218eSStefano Zampini /*@C 2240637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2241637a0070SStefano Zampini 2242637a0070SStefano Zampini Not Collective 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini Input Parameters: 2245637a0070SStefano Zampini . A - the matrix 2246637a0070SStefano Zampini 2247637a0070SStefano Zampini Output Parameters 2248637a0070SStefano Zampini . array - the GPU array in column major order 2249637a0070SStefano Zampini 2250637a0070SStefano Zampini Notes: 2251637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2252637a0070SStefano Zampini 2253637a0070SStefano Zampini Level: developer 2254637a0070SStefano Zampini 2255db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2256637a0070SStefano Zampini @*/ 2257637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2258637a0070SStefano Zampini { 2259637a0070SStefano Zampini PetscFunctionBegin; 2260d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2261cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22629566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2263637a0070SStefano Zampini PetscFunctionReturn(0); 2264637a0070SStefano Zampini } 2265637a0070SStefano Zampini 2266637a0070SStefano Zampini /*@C 2267637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2268637a0070SStefano Zampini 2269637a0070SStefano Zampini Not Collective 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Input Parameters: 2272637a0070SStefano Zampini + A - the matrix 2273637a0070SStefano Zampini - array - the GPU array in column major order 2274637a0070SStefano Zampini 2275637a0070SStefano Zampini Notes: 2276637a0070SStefano Zampini 2277637a0070SStefano Zampini Level: developer 2278637a0070SStefano Zampini 2279db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2280637a0070SStefano Zampini @*/ 2281637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2282637a0070SStefano Zampini { 2283637a0070SStefano Zampini PetscFunctionBegin; 2284d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2285cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22869566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2287637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2288637a0070SStefano Zampini PetscFunctionReturn(0); 2289637a0070SStefano Zampini } 2290637a0070SStefano Zampini 2291637a0070SStefano Zampini /*@C 2292637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2293637a0070SStefano Zampini 2294637a0070SStefano Zampini Not Collective 2295637a0070SStefano Zampini 2296637a0070SStefano Zampini Input Parameters: 2297637a0070SStefano Zampini . A - the matrix 2298637a0070SStefano Zampini 2299637a0070SStefano Zampini Output Parameters 2300637a0070SStefano Zampini . array - the GPU array in column major order 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini Notes: 2303637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Level: developer 2306637a0070SStefano Zampini 2307db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2308637a0070SStefano Zampini @*/ 2309637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2310637a0070SStefano Zampini { 2311637a0070SStefano Zampini PetscFunctionBegin; 2312d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2313cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2314637a0070SStefano Zampini PetscFunctionReturn(0); 2315637a0070SStefano Zampini } 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini /*@C 2318637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini Not Collective 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Input Parameters: 2323637a0070SStefano Zampini + A - the matrix 2324637a0070SStefano Zampini - array - the GPU array in column major order 2325637a0070SStefano Zampini 2326637a0070SStefano Zampini Notes: 2327637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2328637a0070SStefano Zampini 2329637a0070SStefano Zampini Level: developer 2330637a0070SStefano Zampini 2331db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2332637a0070SStefano Zampini @*/ 2333637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2334637a0070SStefano Zampini { 2335637a0070SStefano Zampini PetscFunctionBegin; 2336cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2337637a0070SStefano Zampini PetscFunctionReturn(0); 2338637a0070SStefano Zampini } 2339637a0070SStefano Zampini 2340637a0070SStefano Zampini /*@C 2341637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2342637a0070SStefano Zampini 2343637a0070SStefano Zampini Not Collective 2344637a0070SStefano Zampini 2345637a0070SStefano Zampini Input Parameters: 2346637a0070SStefano Zampini . A - the matrix 2347637a0070SStefano Zampini 2348637a0070SStefano Zampini Output Parameters 2349637a0070SStefano Zampini . array - the GPU array in column major order 2350637a0070SStefano Zampini 2351637a0070SStefano Zampini Notes: 2352637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2353637a0070SStefano Zampini 2354637a0070SStefano Zampini Level: developer 2355637a0070SStefano Zampini 2356db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2357637a0070SStefano Zampini @*/ 2358637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2359637a0070SStefano Zampini { 2360637a0070SStefano Zampini PetscFunctionBegin; 2361d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2362cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23639566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2364637a0070SStefano Zampini PetscFunctionReturn(0); 2365637a0070SStefano Zampini } 2366637a0070SStefano Zampini 2367637a0070SStefano Zampini /*@C 2368637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2369637a0070SStefano Zampini 2370637a0070SStefano Zampini Not Collective 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini Input Parameters: 2373637a0070SStefano Zampini + A - the matrix 2374637a0070SStefano Zampini - array - the GPU array in column major order 2375637a0070SStefano Zampini 2376637a0070SStefano Zampini Notes: 2377637a0070SStefano Zampini 2378637a0070SStefano Zampini Level: developer 2379637a0070SStefano Zampini 2380db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2381637a0070SStefano Zampini @*/ 2382637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2383637a0070SStefano Zampini { 2384637a0070SStefano Zampini PetscFunctionBegin; 2385d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2386cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2388637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2389637a0070SStefano Zampini PetscFunctionReturn(0); 2390637a0070SStefano Zampini } 2391637a0070SStefano Zampini #endif 2392637a0070SStefano Zampini 2393637a0070SStefano Zampini /*@C 2394637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23958965ea79SLois Curfman McInnes 2396d083f849SBarry Smith Collective 2397db81eaa0SLois Curfman McInnes 23988965ea79SLois Curfman McInnes Input Parameters: 2399db81eaa0SLois Curfman McInnes + comm - MPI communicator 24008965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2401db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 24028965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2403db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24046cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2405dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24068965ea79SLois Curfman McInnes 24078965ea79SLois Curfman McInnes Output Parameter: 2408477f1c0bSLois Curfman McInnes . A - the matrix 24098965ea79SLois Curfman McInnes 2410b259b22eSLois Curfman McInnes Notes: 241139ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 241239ddd567SLois Curfman McInnes storage by columns. 2413002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2414002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24158965ea79SLois Curfman McInnes 241618f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 241718f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24186cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 241918f449edSLois Curfman McInnes 24208965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24218965ea79SLois Curfman McInnes (possibly both). 24228965ea79SLois Curfman McInnes 2423027ccd11SLois Curfman McInnes Level: intermediate 2424027ccd11SLois Curfman McInnes 2425db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24268965ea79SLois Curfman McInnes @*/ 242769b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24288965ea79SLois Curfman McInnes { 24293a40ed3dSBarry Smith PetscFunctionBegin; 24309566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24326f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 24339566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 24346f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 24353a40ed3dSBarry Smith PetscFunctionReturn(0); 24368965ea79SLois Curfman McInnes } 24378965ea79SLois Curfman McInnes 2438637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2439637a0070SStefano Zampini /*@C 2440637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2441637a0070SStefano Zampini 2442637a0070SStefano Zampini Collective 2443637a0070SStefano Zampini 2444637a0070SStefano Zampini Input Parameters: 2445637a0070SStefano Zampini + comm - MPI communicator 2446637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2447637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2448637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2449637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2450637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2451637a0070SStefano Zampini to control matrix memory allocation. 2452637a0070SStefano Zampini 2453637a0070SStefano Zampini Output Parameter: 2454637a0070SStefano Zampini . A - the matrix 2455637a0070SStefano Zampini 2456637a0070SStefano Zampini Notes: 2457637a0070SStefano Zampini 2458637a0070SStefano Zampini Level: intermediate 2459637a0070SStefano Zampini 2460db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2461637a0070SStefano Zampini @*/ 2462637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2463637a0070SStefano Zampini { 2464637a0070SStefano Zampini PetscFunctionBegin; 24659566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2466637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24686f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24699566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24706f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2471637a0070SStefano Zampini PetscFunctionReturn(0); 2472637a0070SStefano Zampini } 2473637a0070SStefano Zampini #endif 2474637a0070SStefano Zampini 24756849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24768965ea79SLois Curfman McInnes { 24778965ea79SLois Curfman McInnes Mat mat; 24783501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24798965ea79SLois Curfman McInnes 24803a40ed3dSBarry Smith PetscFunctionBegin; 2481f4259b30SLisandro Dalcin *newmat = NULL; 24829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24849566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2485834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24865aa7edbeSHong Zhang 2487d5f3da31SBarry Smith mat->factortype = A->factortype; 2488c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2489273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24908965ea79SLois Curfman McInnes 2491e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24923782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2493e04c1aa4SHong Zhang 24949566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24959566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24968965ea79SLois Curfman McInnes 24979566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24989566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 249901b82886SBarry Smith 25008965ea79SLois Curfman McInnes *newmat = mat; 25013a40ed3dSBarry Smith PetscFunctionReturn(0); 25028965ea79SLois Curfman McInnes } 25038965ea79SLois Curfman McInnes 2504eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2505eb91f321SVaclav Hapla { 250687d5ce66SSatish Balay PetscBool isbinary; 250787d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 250887d5ce66SSatish Balay PetscBool ishdf5; 250987d5ce66SSatish Balay #endif 2510eb91f321SVaclav Hapla 2511eb91f321SVaclav Hapla PetscFunctionBegin; 2512eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2513eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2514eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25159566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 251787d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 251987d5ce66SSatish Balay #endif 2520eb91f321SVaclav Hapla if (isbinary) { 25219566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2522eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 252387d5ce66SSatish Balay } else if (ishdf5) { 25249566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2525eb91f321SVaclav Hapla #endif 252698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2527eb91f321SVaclav Hapla PetscFunctionReturn(0); 2528eb91f321SVaclav Hapla } 2529eb91f321SVaclav Hapla 25306718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25316e4ee0c6SHong Zhang { 25326e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25336e4ee0c6SHong Zhang Mat a,b; 253490ace30eSBarry Smith 25356e4ee0c6SHong Zhang PetscFunctionBegin; 25366e4ee0c6SHong Zhang a = matA->A; 25376e4ee0c6SHong Zhang b = matB->A; 25382cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25392cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25406e4ee0c6SHong Zhang PetscFunctionReturn(0); 25416e4ee0c6SHong Zhang } 254290ace30eSBarry Smith 25436718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2544baa3c1c6SHong Zhang { 25456718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2546baa3c1c6SHong Zhang 2547baa3c1c6SHong Zhang PetscFunctionBegin; 25489566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25499566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25509566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2551baa3c1c6SHong Zhang PetscFunctionReturn(0); 2552baa3c1c6SHong Zhang } 2553baa3c1c6SHong Zhang 25546718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2555cc48ffa7SToby Isaac { 25566718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2557cc48ffa7SToby Isaac 2558cc48ffa7SToby Isaac PetscFunctionBegin; 25599566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25609566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25619566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2562cc48ffa7SToby Isaac PetscFunctionReturn(0); 2563cc48ffa7SToby Isaac } 2564cc48ffa7SToby Isaac 25656718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2566cb20be35SHong Zhang { 2567baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25686718818eSStefano Zampini Mat_TransMatMultDense *atb; 2569cb20be35SHong Zhang MPI_Comm comm; 25706718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25716718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2572637a0070SStefano Zampini const PetscScalar *atbarray; 2573a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2574e68c0b26SHong Zhang const PetscInt *ranges; 2575cb20be35SHong Zhang 2576cb20be35SHong Zhang PetscFunctionBegin; 25776718818eSStefano Zampini MatCheckProduct(C,3); 25785f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25796718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25806718818eSStefano Zampini recvcounts = atb->recvcounts; 25816718818eSStefano Zampini sendbuf = atb->sendbuf; 25826718818eSStefano Zampini 25839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2585e68c0b26SHong Zhang 2586c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25879566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2588cb20be35SHong Zhang 25899566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2590cb20be35SHong Zhang 2591660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25929566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25939566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2594637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2595baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2596a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2597cb20be35SHong Zhang } 2598cb20be35SHong Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2600637a0070SStefano Zampini 2601c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 26039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 26049566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 26059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 26069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2607cb20be35SHong Zhang PetscFunctionReturn(0); 2608cb20be35SHong Zhang } 2609cb20be35SHong Zhang 26106718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2611cb20be35SHong Zhang { 2612cb20be35SHong Zhang MPI_Comm comm; 2613baa3c1c6SHong Zhang PetscMPIInt size; 2614660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2615baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26166718818eSStefano Zampini PetscBool cisdense; 26170acaeb71SStefano Zampini PetscInt i; 26180acaeb71SStefano Zampini const PetscInt *ranges; 2619cb20be35SHong Zhang 2620cb20be35SHong Zhang PetscFunctionBegin; 26216718818eSStefano Zampini MatCheckProduct(C,3); 26225f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2624cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 262598921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2626cb20be35SHong Zhang } 2627cb20be35SHong Zhang 26284222ddf1SHong Zhang /* create matrix product C */ 26299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 26309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 26316718818eSStefano Zampini if (!cisdense) { 26329566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 26336718818eSStefano Zampini } 26349566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2635baa3c1c6SHong Zhang 26364222ddf1SHong Zhang /* create data structure for reuse C */ 26379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26389566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26394222ddf1SHong Zhang cM = C->rmap->N; 26409566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26419566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26420acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2643baa3c1c6SHong Zhang 26446718818eSStefano Zampini C->product->data = atb; 26456718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2646cb20be35SHong Zhang PetscFunctionReturn(0); 2647cb20be35SHong Zhang } 2648cb20be35SHong Zhang 26494222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2650cb20be35SHong Zhang { 2651cc48ffa7SToby Isaac MPI_Comm comm; 2652cc48ffa7SToby Isaac PetscMPIInt i, size; 2653cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2654cc48ffa7SToby Isaac PetscMPIInt tag; 26554222ddf1SHong Zhang PetscInt alg; 2656cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26574222ddf1SHong Zhang Mat_Product *product = C->product; 26584222ddf1SHong Zhang PetscBool flg; 2659cc48ffa7SToby Isaac 2660cc48ffa7SToby Isaac PetscFunctionBegin; 26616718818eSStefano Zampini MatCheckProduct(C,4); 26625f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26634222ddf1SHong Zhang /* check local size of A and B */ 26645f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2665cc48ffa7SToby Isaac 26669566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2667637a0070SStefano Zampini alg = flg ? 0 : 1; 2668cc48ffa7SToby Isaac 26694222ddf1SHong Zhang /* setup matrix product C */ 26709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26719566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26729566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26744222ddf1SHong Zhang 26754222ddf1SHong Zhang /* create data structure for reuse C */ 26769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26789566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2679cc48ffa7SToby Isaac abt->tag = tag; 2680faa55883SToby Isaac abt->alg = alg; 2681faa55883SToby Isaac switch (alg) { 26824222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2683cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2684cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2686faa55883SToby Isaac break; 26874222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2690faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2691faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2692faa55883SToby Isaac break; 2693faa55883SToby Isaac } 2694cc48ffa7SToby Isaac 26956718818eSStefano Zampini C->product->data = abt; 26966718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26974222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2698cc48ffa7SToby Isaac PetscFunctionReturn(0); 2699cc48ffa7SToby Isaac } 2700cc48ffa7SToby Isaac 2701faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2702cc48ffa7SToby Isaac { 2703cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27046718818eSStefano Zampini Mat_MatTransMultDense *abt; 2705cc48ffa7SToby Isaac MPI_Comm comm; 2706cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2707f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2708cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2709cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2710637a0070SStefano Zampini const PetscScalar *av,*bv; 271123fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2712cc48ffa7SToby Isaac MPI_Request reqs[2]; 2713cc48ffa7SToby Isaac const PetscInt *ranges; 2714cc48ffa7SToby Isaac 2715cc48ffa7SToby Isaac PetscFunctionBegin; 27166718818eSStefano Zampini MatCheckProduct(C,3); 27175f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27186718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 27209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 27219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27229566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27239566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27259566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27279566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 27289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 27299566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 27319566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2732cc48ffa7SToby Isaac bn = B->rmap->n; 2733637a0070SStefano Zampini if (blda == bn) { 2734637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2735cc48ffa7SToby Isaac } else { 2736cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2737cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2738cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2739637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2740cc48ffa7SToby Isaac } 2741cc48ffa7SToby Isaac } 2742cc48ffa7SToby Isaac } 2743cc48ffa7SToby Isaac if (size > 1) { 2744cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2745cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2746cc48ffa7SToby Isaac } else { 2747cc48ffa7SToby Isaac sendto = recvfrom = 0; 2748cc48ffa7SToby Isaac } 27499566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27509566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2751cc48ffa7SToby Isaac recvisfrom = rank; 2752cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2753cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2754cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2755cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2756cc48ffa7SToby Isaac 2757cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2758cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2759cc48ffa7SToby Isaac sendsiz = cK * bn; 2760cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2761cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2764cc48ffa7SToby Isaac } 2765cc48ffa7SToby Isaac 2766cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27679566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 276850ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2769cc48ffa7SToby Isaac 2770cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2771cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2773cc48ffa7SToby Isaac } 2774cc48ffa7SToby Isaac bn = nextbn; 2775cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2776cc48ffa7SToby Isaac sendbuf = recvbuf; 2777cc48ffa7SToby Isaac } 27789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2783cc48ffa7SToby Isaac PetscFunctionReturn(0); 2784cc48ffa7SToby Isaac } 2785cc48ffa7SToby Isaac 2786faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2787faa55883SToby Isaac { 2788faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27896718818eSStefano Zampini Mat_MatTransMultDense *abt; 2790faa55883SToby Isaac MPI_Comm comm; 2791637a0070SStefano Zampini PetscMPIInt size; 2792637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2793637a0070SStefano Zampini const PetscScalar *av,*bv; 2794637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2795faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2796637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2797faa55883SToby Isaac 2798faa55883SToby Isaac PetscFunctionBegin; 27996718818eSStefano Zampini MatCheckProduct(C,3); 28005f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28016718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 28029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 28039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 28049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 28059566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 28069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 28079566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 28089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 28099566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 28109566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 28119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2812faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2813faa55883SToby Isaac bn = B->rmap->n; 2814faa55883SToby Isaac sendbuf = abt->buf[0]; 2815faa55883SToby Isaac recvbuf = abt->buf[1]; 2816faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2817faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2818637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2819faa55883SToby Isaac } 2820faa55883SToby Isaac } 28219566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28239566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 28249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 28259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 282650ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 28279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 28289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 28309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 28319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2832faa55883SToby Isaac PetscFunctionReturn(0); 2833faa55883SToby Isaac } 2834faa55883SToby Isaac 2835faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2836faa55883SToby Isaac { 28376718818eSStefano Zampini Mat_MatTransMultDense *abt; 2838faa55883SToby Isaac 2839faa55883SToby Isaac PetscFunctionBegin; 28406718818eSStefano Zampini MatCheckProduct(C,3); 28415f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28426718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2843faa55883SToby Isaac switch (abt->alg) { 2844faa55883SToby Isaac case 1: 28459566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2846faa55883SToby Isaac break; 2847faa55883SToby Isaac default: 28489566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2849faa55883SToby Isaac break; 2850faa55883SToby Isaac } 2851faa55883SToby Isaac PetscFunctionReturn(0); 2852faa55883SToby Isaac } 2853faa55883SToby Isaac 28546718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2855320f2790SHong Zhang { 28566718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2857320f2790SHong Zhang 2858320f2790SHong Zhang PetscFunctionBegin; 28599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28629566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2863320f2790SHong Zhang PetscFunctionReturn(0); 2864320f2790SHong Zhang } 2865320f2790SHong Zhang 28665242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2867320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2868320f2790SHong Zhang { 28696718818eSStefano Zampini Mat_MatMultDense *ab; 2870320f2790SHong Zhang 2871320f2790SHong Zhang PetscFunctionBegin; 28726718818eSStefano Zampini MatCheckProduct(C,3); 28735f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28746718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28759566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28769566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28779566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28789566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2879320f2790SHong Zhang PetscFunctionReturn(0); 2880320f2790SHong Zhang } 2881320f2790SHong Zhang 28826718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2883320f2790SHong Zhang { 2884320f2790SHong Zhang Mat Ae,Be,Ce; 2885320f2790SHong Zhang Mat_MatMultDense *ab; 2886320f2790SHong Zhang 2887320f2790SHong Zhang PetscFunctionBegin; 28886718818eSStefano Zampini MatCheckProduct(C,4); 28895f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28904222ddf1SHong Zhang /* check local size of A and B */ 2891320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 289298921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2893320f2790SHong Zhang } 2894320f2790SHong Zhang 28954222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28989566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28999566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2901320f2790SHong Zhang 29029566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 29039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 29049566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 29059566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 29069566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2907320f2790SHong Zhang 29084222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 29109566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 29114222ddf1SHong Zhang 29124222ddf1SHong Zhang /* setup C */ 29139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 29149566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2916320f2790SHong Zhang 2917320f2790SHong Zhang /* create data structure for reuse Cdense */ 29189566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2919320f2790SHong Zhang ab->Ae = Ae; 2920320f2790SHong Zhang ab->Be = Be; 2921320f2790SHong Zhang ab->Ce = Ce; 29226718818eSStefano Zampini 29236718818eSStefano Zampini C->product->data = ab; 29246718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29254222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2926320f2790SHong Zhang PetscFunctionReturn(0); 2927320f2790SHong Zhang } 29284222ddf1SHong Zhang #endif 29294222ddf1SHong Zhang /* ----------------------------------------------- */ 29304222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29314222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2932320f2790SHong Zhang { 2933320f2790SHong Zhang PetscFunctionBegin; 29344222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29354222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2936320f2790SHong Zhang PetscFunctionReturn(0); 2937320f2790SHong Zhang } 29385242a7b1SHong Zhang #endif 293986aefd0dSHong Zhang 29404222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29414222ddf1SHong Zhang { 29424222ddf1SHong Zhang Mat_Product *product = C->product; 29434222ddf1SHong Zhang Mat A = product->A,B=product->B; 29444222ddf1SHong Zhang 29454222ddf1SHong Zhang PetscFunctionBegin; 29464222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 294798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29486718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29496718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29504222ddf1SHong Zhang PetscFunctionReturn(0); 29514222ddf1SHong Zhang } 29524222ddf1SHong Zhang 29534222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29544222ddf1SHong Zhang { 29554222ddf1SHong Zhang Mat_Product *product = C->product; 29564222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29574222ddf1SHong Zhang PetscInt alg,nalg = 2; 29584222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29594222ddf1SHong Zhang 29604222ddf1SHong Zhang PetscFunctionBegin; 29614222ddf1SHong Zhang /* Set default algorithm */ 29624222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29639566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29644222ddf1SHong Zhang if (flg) { 29659566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29664222ddf1SHong Zhang } 29674222ddf1SHong Zhang 29684222ddf1SHong Zhang /* Get runtime option */ 29694222ddf1SHong Zhang if (product->api_user) { 2970d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29719566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2972d0609cedSBarry Smith PetscOptionsEnd(); 29734222ddf1SHong Zhang } else { 2974d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29759566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2976d0609cedSBarry Smith PetscOptionsEnd(); 29774222ddf1SHong Zhang } 29784222ddf1SHong Zhang if (flg) { 29799566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29804222ddf1SHong Zhang } 29814222ddf1SHong Zhang 29824222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29834222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29844222ddf1SHong Zhang PetscFunctionReturn(0); 29854222ddf1SHong Zhang } 29864222ddf1SHong Zhang 29874222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29884222ddf1SHong Zhang { 29894222ddf1SHong Zhang Mat_Product *product = C->product; 29904222ddf1SHong Zhang 29914222ddf1SHong Zhang PetscFunctionBegin; 29924222ddf1SHong Zhang switch (product->type) { 29934222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29944222ddf1SHong Zhang case MATPRODUCT_AB: 29959566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29964222ddf1SHong Zhang break; 29974222ddf1SHong Zhang #endif 29984222ddf1SHong Zhang case MATPRODUCT_AtB: 29999566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 30004222ddf1SHong Zhang break; 30014222ddf1SHong Zhang case MATPRODUCT_ABt: 30029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 30034222ddf1SHong Zhang break; 30046718818eSStefano Zampini default: 30056718818eSStefano Zampini break; 30064222ddf1SHong Zhang } 30074222ddf1SHong Zhang PetscFunctionReturn(0); 30084222ddf1SHong Zhang } 3009