xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision bc5ccf886fc7b029025ea4de8c4047e1db2135de)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*bc5ccf88SSatish Balay static char vcid[] = "$Id: mpidense.c,v 1.105 1999/02/15 21:55:24 balay Exp balay $";
38965ea79SLois Curfman McInnes #endif
48965ea79SLois Curfman McInnes 
5ed3cc1f0SBarry Smith /*
6ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
7ed3cc1f0SBarry Smith */
8ed3cc1f0SBarry Smith 
970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"
10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
118965ea79SLois Curfman McInnes 
125615d1e5SSatish Balay #undef __FUNC__
135615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense"
148f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv)
158965ea79SLois Curfman McInnes {
1639b7565bSBarry Smith   Mat_MPIDense *A = (Mat_MPIDense *) mat->data;
1739b7565bSBarry Smith   int          ierr, i, j, rstart = A->rstart, rend = A->rend, row;
1839b7565bSBarry Smith   int          roworiented = A->roworiented;
198965ea79SLois Curfman McInnes 
203a40ed3dSBarry Smith   PetscFunctionBegin;
218965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
225ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
23a8c6a408SBarry Smith     if (idxm[i] >= A->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
248965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
258965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
2639b7565bSBarry Smith       if (roworiented) {
2739b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr);
283a40ed3dSBarry Smith       } else {
298965ea79SLois Curfman McInnes         for ( j=0; j<n; j++ ) {
305ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
31a8c6a408SBarry Smith           if (idxn[j] >= A->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
3239b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr);
3339b7565bSBarry Smith         }
348965ea79SLois Curfman McInnes       }
353a40ed3dSBarry Smith     } else {
3639b7565bSBarry Smith       if (roworiented) {
3739b7565bSBarry Smith         ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr);
383a40ed3dSBarry Smith       } else { /* must stash each seperately */
3939b7565bSBarry Smith         row = idxm[i];
4039b7565bSBarry Smith         for ( j=0; j<n; j++ ) {
417056b6fcSBarry Smith           ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
4239b7565bSBarry Smith         }
4339b7565bSBarry Smith       }
44b49de8d1SLois Curfman McInnes     }
45b49de8d1SLois Curfman McInnes   }
463a40ed3dSBarry Smith   PetscFunctionReturn(0);
47b49de8d1SLois Curfman McInnes }
48b49de8d1SLois Curfman McInnes 
495615d1e5SSatish Balay #undef __FUNC__
505615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense"
518f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
52b49de8d1SLois Curfman McInnes {
53b49de8d1SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
54b49de8d1SLois Curfman McInnes   int          ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row;
55b49de8d1SLois Curfman McInnes 
563a40ed3dSBarry Smith   PetscFunctionBegin;
57b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
58a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
59a8c6a408SBarry Smith     if (idxm[i] >= mdn->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
60b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
61b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
62b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
63a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
64a8c6a408SBarry Smith         if (idxn[j] >= mdn->N) {
65a8c6a408SBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
66a8c6a408SBarry Smith         }
67b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr);
68b49de8d1SLois Curfman McInnes       }
69a8c6a408SBarry Smith     } else {
70a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
718965ea79SLois Curfman McInnes     }
728965ea79SLois Curfman McInnes   }
733a40ed3dSBarry Smith   PetscFunctionReturn(0);
748965ea79SLois Curfman McInnes }
758965ea79SLois Curfman McInnes 
765615d1e5SSatish Balay #undef __FUNC__
775615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense"
788f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array)
79ff14e315SSatish Balay {
80ff14e315SSatish Balay   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
81ff14e315SSatish Balay   int          ierr;
82ff14e315SSatish Balay 
833a40ed3dSBarry Smith   PetscFunctionBegin;
84ff14e315SSatish Balay   ierr = MatGetArray(a->A,array); CHKERRQ(ierr);
853a40ed3dSBarry Smith   PetscFunctionReturn(0);
86ff14e315SSatish Balay }
87ff14e315SSatish Balay 
885615d1e5SSatish Balay #undef __FUNC__
895615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense"
908f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array)
91ff14e315SSatish Balay {
923a40ed3dSBarry Smith   PetscFunctionBegin;
933a40ed3dSBarry Smith   PetscFunctionReturn(0);
94ff14e315SSatish Balay }
95ff14e315SSatish Balay 
965615d1e5SSatish Balay #undef __FUNC__
975615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense"
988f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
998965ea79SLois Curfman McInnes {
10039ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1018965ea79SLois Curfman McInnes   MPI_Comm     comm = mat->comm;
10239ddd567SLois Curfman McInnes   int          size = mdn->size, *owners = mdn->rowners, rank = mdn->rank;
1038965ea79SLois Curfman McInnes   int          *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
10439ddd567SLois Curfman McInnes   int          tag = mat->tag, *owner,*starts,count,ierr;
1058965ea79SLois Curfman McInnes   InsertMode   addv;
10639ddd567SLois Curfman McInnes   MPI_Request  *send_waits,*recv_waits;
1078965ea79SLois Curfman McInnes   Scalar       *rvalues,*svalues;
1088965ea79SLois Curfman McInnes 
1093a40ed3dSBarry Smith   PetscFunctionBegin;
1108965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
111ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
1127056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
113a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Cannot mix adds/inserts on different procs");
1148965ea79SLois Curfman McInnes   }
115e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
1168965ea79SLois Curfman McInnes 
1178965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
1180452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
119cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
1200452661fSBarry Smith   owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
12139ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
12239ddd567SLois Curfman McInnes     idx = mdn->stash.idx[i];
1238965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1248965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
1258965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1268965ea79SLois Curfman McInnes       }
1278965ea79SLois Curfman McInnes     }
1288965ea79SLois Curfman McInnes   }
1298965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1308965ea79SLois Curfman McInnes 
1318965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
1320452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
133ca161407SBarry Smith   ierr = MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
1348965ea79SLois Curfman McInnes   nreceives = work[rank];
135a8c6a408SBarry Smith   if (nreceives > size) SETERRQ(PETSC_ERR_PLIB,0,"Internal PETSc error");
136ca161407SBarry Smith   ierr = MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
1378965ea79SLois Curfman McInnes   nmax = work[rank];
1380452661fSBarry Smith   PetscFree(work);
1398965ea79SLois Curfman McInnes 
1408965ea79SLois Curfman McInnes   /* post receives:
1418965ea79SLois Curfman McInnes        1) each message will consist of ordered pairs
1428965ea79SLois Curfman McInnes      (global index,value) we store the global index as a double
1438965ea79SLois Curfman McInnes      to simplify the message passing.
1448965ea79SLois Curfman McInnes        2) since we don't know how long each individual message is we
1458965ea79SLois Curfman McInnes      allocate the largest needed buffer for each receive. Potentially
1468965ea79SLois Curfman McInnes      this is a lot of wasted space.
1478965ea79SLois Curfman McInnes 
1488965ea79SLois Curfman McInnes        This could be done better.
1498965ea79SLois Curfman McInnes   */
1503b2fbd54SBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
1513b2fbd54SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
1528965ea79SLois Curfman McInnes   for ( i=0; i<nreceives; i++ ) {
153ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
1548965ea79SLois Curfman McInnes   }
1558965ea79SLois Curfman McInnes 
1568965ea79SLois Curfman McInnes   /* do sends:
1578965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
1588965ea79SLois Curfman McInnes          the ith processor
1598965ea79SLois Curfman McInnes   */
1603b2fbd54SBarry Smith   svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
1613b2fbd54SBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
1620452661fSBarry Smith   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
1638965ea79SLois Curfman McInnes   starts[0] = 0;
1648965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16539ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
16639ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]]       = (Scalar)  mdn->stash.idx[i];
16739ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]+1]     = (Scalar)  mdn->stash.idy[i];
16839ddd567SLois Curfman McInnes     svalues[3*(starts[owner[i]]++)+2] =  mdn->stash.array[i];
1698965ea79SLois Curfman McInnes   }
1700452661fSBarry Smith   PetscFree(owner);
1718965ea79SLois Curfman McInnes   starts[0] = 0;
1728965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1738965ea79SLois Curfman McInnes   count = 0;
1748965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1758965ea79SLois Curfman McInnes     if (procs[i]) {
176ca161407SBarry Smith       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
1778965ea79SLois Curfman McInnes     }
1788965ea79SLois Curfman McInnes   }
1790452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
1808965ea79SLois Curfman McInnes 
1818965ea79SLois Curfman McInnes   /* Free cache space */
182d2dc9b81SLois Curfman McInnes   PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n);
183*bc5ccf88SSatish Balay   ierr = StashReset_Private(&mdn->stash); CHKERRQ(ierr);
1848965ea79SLois Curfman McInnes 
18539ddd567SLois Curfman McInnes   mdn->svalues    = svalues;    mdn->rvalues = rvalues;
18639ddd567SLois Curfman McInnes   mdn->nsends     = nsends;     mdn->nrecvs = nreceives;
18739ddd567SLois Curfman McInnes   mdn->send_waits = send_waits; mdn->recv_waits = recv_waits;
18839ddd567SLois Curfman McInnes   mdn->rmax       = nmax;
1898965ea79SLois Curfman McInnes 
1903a40ed3dSBarry Smith   PetscFunctionReturn(0);
1918965ea79SLois Curfman McInnes }
19239ddd567SLois Curfman McInnes extern int MatSetUpMultiply_MPIDense(Mat);
1938965ea79SLois Curfman McInnes 
1945615d1e5SSatish Balay #undef __FUNC__
1955615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense"
1968f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
1978965ea79SLois Curfman McInnes {
19839ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1998965ea79SLois Curfman McInnes   MPI_Status   *send_status,recv_status;
20039ddd567SLois Curfman McInnes   int          imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col;
2018965ea79SLois Curfman McInnes   Scalar       *values,val;
202e0fa3b82SLois Curfman McInnes   InsertMode   addv = mat->insertmode;
2038965ea79SLois Curfman McInnes 
2043a40ed3dSBarry Smith   PetscFunctionBegin;
2058965ea79SLois Curfman McInnes   /*  wait on receives */
2068965ea79SLois Curfman McInnes   while (count) {
207ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
2088965ea79SLois Curfman McInnes     /* unpack receives into our local space */
20939ddd567SLois Curfman McInnes     values = mdn->rvalues + 3*imdex*mdn->rmax;
210ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
2118965ea79SLois Curfman McInnes     n = n/3;
2128965ea79SLois Curfman McInnes     for ( i=0; i<n; i++ ) {
213227d817aSBarry Smith       row = (int) PetscReal(values[3*i]) - mdn->rstart;
214227d817aSBarry Smith       col = (int) PetscReal(values[3*i+1]);
2158965ea79SLois Curfman McInnes       val = values[3*i+2];
21639ddd567SLois Curfman McInnes       if (col >= 0 && col < mdn->N) {
21739ddd567SLois Curfman McInnes         MatSetValues(mdn->A,1,&row,1,&col,&val,addv);
2188965ea79SLois Curfman McInnes       }
219a8c6a408SBarry Smith       else {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid column");}
2208965ea79SLois Curfman McInnes     }
2218965ea79SLois Curfman McInnes     count--;
2228965ea79SLois Curfman McInnes   }
2230452661fSBarry Smith   PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues);
2248965ea79SLois Curfman McInnes 
2258965ea79SLois Curfman McInnes   /* wait on sends */
22639ddd567SLois Curfman McInnes   if (mdn->nsends) {
2277056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
228ca161407SBarry Smith     ierr        = MPI_Waitall(mdn->nsends,mdn->send_waits,send_status);CHKERRQ(ierr);
2290452661fSBarry Smith     PetscFree(send_status);
2308965ea79SLois Curfman McInnes   }
2310452661fSBarry Smith   PetscFree(mdn->send_waits); PetscFree(mdn->svalues);
2328965ea79SLois Curfman McInnes 
23339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr);
23439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr);
2358965ea79SLois Curfman McInnes 
2366d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
23739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr);
2388965ea79SLois Curfman McInnes   }
2393a40ed3dSBarry Smith   PetscFunctionReturn(0);
2408965ea79SLois Curfman McInnes }
2418965ea79SLois Curfman McInnes 
2425615d1e5SSatish Balay #undef __FUNC__
2435615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense"
2448f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A)
2458965ea79SLois Curfman McInnes {
2463a40ed3dSBarry Smith   int          ierr;
24739ddd567SLois Curfman McInnes   Mat_MPIDense *l = (Mat_MPIDense *) A->data;
2483a40ed3dSBarry Smith 
2493a40ed3dSBarry Smith   PetscFunctionBegin;
2503a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
2513a40ed3dSBarry Smith   PetscFunctionReturn(0);
2528965ea79SLois Curfman McInnes }
2538965ea79SLois Curfman McInnes 
2545615d1e5SSatish Balay #undef __FUNC__
2555615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense"
2568f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs)
2574e220ebcSLois Curfman McInnes {
2583a40ed3dSBarry Smith   PetscFunctionBegin;
2594e220ebcSLois Curfman McInnes   *bs = 1;
2603a40ed3dSBarry Smith   PetscFunctionReturn(0);
2614e220ebcSLois Curfman McInnes }
2624e220ebcSLois Curfman McInnes 
2638965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
2648965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
2658965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
2663501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
2678965ea79SLois Curfman McInnes    routine.
2688965ea79SLois Curfman McInnes */
2695615d1e5SSatish Balay #undef __FUNC__
2705615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense"
2718f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag)
2728965ea79SLois Curfman McInnes {
27339ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense *) A->data;
2748965ea79SLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2758965ea79SLois Curfman McInnes   int            *procs,*nprocs,j,found,idx,nsends,*work;
2768965ea79SLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2778965ea79SLois Curfman McInnes   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
2788965ea79SLois Curfman McInnes   int            *lens,imdex,*lrows,*values;
2798965ea79SLois Curfman McInnes   MPI_Comm       comm = A->comm;
2808965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
2818965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
2828965ea79SLois Curfman McInnes   IS             istmp;
2838965ea79SLois Curfman McInnes 
2843a40ed3dSBarry Smith   PetscFunctionBegin;
28577c4ece6SBarry Smith   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
2868965ea79SLois Curfman McInnes   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2878965ea79SLois Curfman McInnes 
2888965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
2890452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
290cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
2910452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2928965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
2938965ea79SLois Curfman McInnes     idx = rows[i];
2948965ea79SLois Curfman McInnes     found = 0;
2958965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2968965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
2978965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2988965ea79SLois Curfman McInnes       }
2998965ea79SLois Curfman McInnes     }
300a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
3018965ea79SLois Curfman McInnes   }
3028965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3038965ea79SLois Curfman McInnes 
3048965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
3050452661fSBarry Smith   work   = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
306ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
3078965ea79SLois Curfman McInnes   nrecvs = work[rank];
308ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
3098965ea79SLois Curfman McInnes   nmax   = work[rank];
3100452661fSBarry Smith   PetscFree(work);
3118965ea79SLois Curfman McInnes 
3128965ea79SLois Curfman McInnes   /* post receives:   */
3133a40ed3dSBarry Smith   rvalues    = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
3143a40ed3dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
3158965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
316ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3178965ea79SLois Curfman McInnes   }
3188965ea79SLois Curfman McInnes 
3198965ea79SLois Curfman McInnes   /* do sends:
3208965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3218965ea79SLois Curfman McInnes          the ith processor
3228965ea79SLois Curfman McInnes   */
3230452661fSBarry Smith   svalues    = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
3247056b6fcSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
3250452661fSBarry Smith   starts     = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3268965ea79SLois Curfman McInnes   starts[0]  = 0;
3278965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3288965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
3298965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3308965ea79SLois Curfman McInnes   }
3318965ea79SLois Curfman McInnes   ISRestoreIndices(is,&rows);
3328965ea79SLois Curfman McInnes 
3338965ea79SLois Curfman McInnes   starts[0] = 0;
3348965ea79SLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3358965ea79SLois Curfman McInnes   count = 0;
3368965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3378965ea79SLois Curfman McInnes     if (procs[i]) {
338ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3398965ea79SLois Curfman McInnes     }
3408965ea79SLois Curfman McInnes   }
3410452661fSBarry Smith   PetscFree(starts);
3428965ea79SLois Curfman McInnes 
3438965ea79SLois Curfman McInnes   base = owners[rank];
3448965ea79SLois Curfman McInnes 
3458965ea79SLois Curfman McInnes   /*  wait on receives */
3460452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3478965ea79SLois Curfman McInnes   source = lens + nrecvs;
3488965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
3498965ea79SLois Curfman McInnes   while (count) {
350ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
3518965ea79SLois Curfman McInnes     /* unpack receives into our local space */
352ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
3538965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
3548965ea79SLois Curfman McInnes     lens[imdex]  = n;
3558965ea79SLois Curfman McInnes     slen += n;
3568965ea79SLois Curfman McInnes     count--;
3578965ea79SLois Curfman McInnes   }
3580452661fSBarry Smith   PetscFree(recv_waits);
3598965ea79SLois Curfman McInnes 
3608965ea79SLois Curfman McInnes   /* move the data into the send scatter */
3610452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3628965ea79SLois Curfman McInnes   count = 0;
3638965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3648965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
3658965ea79SLois Curfman McInnes     for ( j=0; j<lens[i]; j++ ) {
3668965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
3678965ea79SLois Curfman McInnes     }
3688965ea79SLois Curfman McInnes   }
3690452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
3700452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
3718965ea79SLois Curfman McInnes 
3728965ea79SLois Curfman McInnes   /* actually zap the local rows */
373029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
3748965ea79SLois Curfman McInnes   PLogObjectParent(A,istmp);
3750452661fSBarry Smith   PetscFree(lrows);
3768965ea79SLois Curfman McInnes   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
3778965ea79SLois Curfman McInnes   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3788965ea79SLois Curfman McInnes 
3798965ea79SLois Curfman McInnes   /* wait on sends */
3808965ea79SLois Curfman McInnes   if (nsends) {
3817056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
382ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
3830452661fSBarry Smith     PetscFree(send_status);
3848965ea79SLois Curfman McInnes   }
3850452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
3868965ea79SLois Curfman McInnes 
3873a40ed3dSBarry Smith   PetscFunctionReturn(0);
3888965ea79SLois Curfman McInnes }
3898965ea79SLois Curfman McInnes 
3905615d1e5SSatish Balay #undef __FUNC__
3915615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense"
3928f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
3938965ea79SLois Curfman McInnes {
39439ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
3958965ea79SLois Curfman McInnes   int          ierr;
396c456f294SBarry Smith 
3973a40ed3dSBarry Smith   PetscFunctionBegin;
39843a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39943a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
40044cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr);
4013a40ed3dSBarry Smith   PetscFunctionReturn(0);
4028965ea79SLois Curfman McInnes }
4038965ea79SLois Curfman McInnes 
4045615d1e5SSatish Balay #undef __FUNC__
4055615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense"
4068f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4078965ea79SLois Curfman McInnes {
40839ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4098965ea79SLois Curfman McInnes   int          ierr;
410c456f294SBarry Smith 
4113a40ed3dSBarry Smith   PetscFunctionBegin;
41243a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
41343a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
41444cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr);
4153a40ed3dSBarry Smith   PetscFunctionReturn(0);
4168965ea79SLois Curfman McInnes }
4178965ea79SLois Curfman McInnes 
4185615d1e5SSatish Balay #undef __FUNC__
4195615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense"
4208f6be9afSLois Curfman McInnes int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy)
421096963f5SLois Curfman McInnes {
422096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
423096963f5SLois Curfman McInnes   int          ierr;
4243501a2bdSLois Curfman McInnes   Scalar       zero = 0.0;
425096963f5SLois Curfman McInnes 
4263a40ed3dSBarry Smith   PetscFunctionBegin;
4273501a2bdSLois Curfman McInnes   ierr = VecSet(&zero,yy); CHKERRQ(ierr);
42844cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
429537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
430537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
4313a40ed3dSBarry Smith   PetscFunctionReturn(0);
432096963f5SLois Curfman McInnes }
433096963f5SLois Curfman McInnes 
4345615d1e5SSatish Balay #undef __FUNC__
4355615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense"
4368f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
437096963f5SLois Curfman McInnes {
438096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
439096963f5SLois Curfman McInnes   int          ierr;
440096963f5SLois Curfman McInnes 
4413a40ed3dSBarry Smith   PetscFunctionBegin;
4423501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz); CHKERRQ(ierr);
44344cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
444537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
445537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
4463a40ed3dSBarry Smith   PetscFunctionReturn(0);
447096963f5SLois Curfman McInnes }
448096963f5SLois Curfman McInnes 
4495615d1e5SSatish Balay #undef __FUNC__
4505615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense"
4518f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v)
4528965ea79SLois Curfman McInnes {
45339ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
454096963f5SLois Curfman McInnes   Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data;
45544cd7ae7SLois Curfman McInnes   int          ierr, len, i, n, m = a->m, radd;
45644cd7ae7SLois Curfman McInnes   Scalar       *x, zero = 0.0;
457ed3cc1f0SBarry Smith 
4583a40ed3dSBarry Smith   PetscFunctionBegin;
45944cd7ae7SLois Curfman McInnes   VecSet(&zero,v);
460096963f5SLois Curfman McInnes   ierr = VecGetArray(v,&x); CHKERRQ(ierr);
461096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n); CHKERRQ(ierr);
462a8c6a408SBarry Smith   if (n != a->M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming mat and vec");
46344cd7ae7SLois Curfman McInnes   len = PetscMin(aloc->m,aloc->n);
4647ddc982cSLois Curfman McInnes   radd = a->rstart*m;
46544cd7ae7SLois Curfman McInnes   for ( i=0; i<len; i++ ) {
466096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
467096963f5SLois Curfman McInnes   }
4683a40ed3dSBarry Smith   PetscFunctionReturn(0);
4698965ea79SLois Curfman McInnes }
4708965ea79SLois Curfman McInnes 
4715615d1e5SSatish Balay #undef __FUNC__
4725615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense"
473e1311b90SBarry Smith int MatDestroy_MPIDense(Mat mat)
4748965ea79SLois Curfman McInnes {
4753501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4768965ea79SLois Curfman McInnes   int          ierr;
477ed3cc1f0SBarry Smith 
4783a40ed3dSBarry Smith   PetscFunctionBegin;
47994d884c6SBarry Smith   if (--mat->refct > 0) PetscFunctionReturn(0);
48094d884c6SBarry Smith 
48194d884c6SBarry Smith   if (mat->mapping) {
48294d884c6SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
48394d884c6SBarry Smith   }
48494d884c6SBarry Smith   if (mat->bmapping) {
48594d884c6SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr);
48694d884c6SBarry Smith   }
4873a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
488e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mdn->M,mdn->N);
4898965ea79SLois Curfman McInnes #endif
490*bc5ccf88SSatish Balay   ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr);
4910452661fSBarry Smith   PetscFree(mdn->rowners);
4923501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A); CHKERRQ(ierr);
4933501a2bdSLois Curfman McInnes   if (mdn->lvec)   VecDestroy(mdn->lvec);
4943501a2bdSLois Curfman McInnes   if (mdn->Mvctx)  VecScatterDestroy(mdn->Mvctx);
495622d7880SLois Curfman McInnes   if (mdn->factor) {
496622d7880SLois Curfman McInnes     if (mdn->factor->temp)   PetscFree(mdn->factor->temp);
497622d7880SLois Curfman McInnes     if (mdn->factor->tag)    PetscFree(mdn->factor->tag);
498622d7880SLois Curfman McInnes     if (mdn->factor->pivots) PetscFree(mdn->factor->pivots);
499622d7880SLois Curfman McInnes     PetscFree(mdn->factor);
500622d7880SLois Curfman McInnes   }
5010452661fSBarry Smith   PetscFree(mdn);
50261b13de0SBarry Smith   if (mat->rmap) {
50361b13de0SBarry Smith     ierr = MapDestroy(mat->rmap);CHKERRQ(ierr);
50461b13de0SBarry Smith   }
50561b13de0SBarry Smith   if (mat->cmap) {
50661b13de0SBarry Smith     ierr = MapDestroy(mat->cmap);CHKERRQ(ierr);
50790f02eecSBarry Smith   }
5088965ea79SLois Curfman McInnes   PLogObjectDestroy(mat);
5090452661fSBarry Smith   PetscHeaderDestroy(mat);
5103a40ed3dSBarry Smith   PetscFunctionReturn(0);
5118965ea79SLois Curfman McInnes }
51239ddd567SLois Curfman McInnes 
5135615d1e5SSatish Balay #undef __FUNC__
5145615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary"
51539ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer)
5168965ea79SLois Curfman McInnes {
51739ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
5188965ea79SLois Curfman McInnes   int          ierr;
5197056b6fcSBarry Smith 
5203a40ed3dSBarry Smith   PetscFunctionBegin;
52139ddd567SLois Curfman McInnes   if (mdn->size == 1) {
52239ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5238965ea79SLois Curfman McInnes   }
524a8c6a408SBarry Smith   else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
5253a40ed3dSBarry Smith   PetscFunctionReturn(0);
5268965ea79SLois Curfman McInnes }
5278965ea79SLois Curfman McInnes 
5285615d1e5SSatish Balay #undef __FUNC__
5295615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII"
53039ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer)
5318965ea79SLois Curfman McInnes {
53239ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
53377ed5343SBarry Smith   int          ierr, format, size = mdn->size, rank = mdn->rank;
5348965ea79SLois Curfman McInnes   FILE         *fd;
53519bcc07fSBarry Smith   ViewerType   vtype;
5368965ea79SLois Curfman McInnes 
5373a40ed3dSBarry Smith   PetscFunctionBegin;
5383a40ed3dSBarry Smith   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
53990ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
54090ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
541639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
5424e220ebcSLois Curfman McInnes     MatInfo info;
5434e220ebcSLois Curfman McInnes     ierr = MatGetInfo(mat,MAT_LOCAL,&info);
54477c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
5454e220ebcSLois Curfman McInnes       fprintf(fd,"  [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m,
5464e220ebcSLois Curfman McInnes          (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
547096963f5SLois Curfman McInnes       fflush(fd);
54877c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5493501a2bdSLois Curfman McInnes     ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr);
5503a40ed3dSBarry Smith     PetscFunctionReturn(0);
55196f6c058SBarry Smith   } else if (format == VIEWER_FORMAT_ASCII_INFO) {
5523a40ed3dSBarry Smith     PetscFunctionReturn(0);
5538965ea79SLois Curfman McInnes   }
55477ed5343SBarry Smith 
5558965ea79SLois Curfman McInnes   if (size == 1) {
55639ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5573a40ed3dSBarry Smith   } else {
5588965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
5598965ea79SLois Curfman McInnes     Mat          A;
56039ddd567SLois Curfman McInnes     int          M = mdn->M, N = mdn->N,m,row,i, nz, *cols;
56139ddd567SLois Curfman McInnes     Scalar       *vals;
56239ddd567SLois Curfman McInnes     Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data;
5638965ea79SLois Curfman McInnes 
5648965ea79SLois Curfman McInnes     if (!rank) {
5650513a670SBarry Smith       ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5663a40ed3dSBarry Smith     } else {
5670513a670SBarry Smith       ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5688965ea79SLois Curfman McInnes     }
5698965ea79SLois Curfman McInnes     PLogObjectParent(mat,A);
5708965ea79SLois Curfman McInnes 
57139ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
57239ddd567SLois Curfman McInnes        but it's quick for now */
57339ddd567SLois Curfman McInnes     row = mdn->rstart; m = Amdn->m;
5748965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
57539ddd567SLois Curfman McInnes       ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
57639ddd567SLois Curfman McInnes       ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr);
57739ddd567SLois Curfman McInnes       ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
57839ddd567SLois Curfman McInnes       row++;
5798965ea79SLois Curfman McInnes     }
5808965ea79SLois Curfman McInnes 
5816d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5826d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5838965ea79SLois Curfman McInnes     if (!rank) {
58439ddd567SLois Curfman McInnes       ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr);
5858965ea79SLois Curfman McInnes     }
5868965ea79SLois Curfman McInnes     ierr = MatDestroy(A); CHKERRQ(ierr);
5878965ea79SLois Curfman McInnes   }
5883a40ed3dSBarry Smith   PetscFunctionReturn(0);
5898965ea79SLois Curfman McInnes }
5908965ea79SLois Curfman McInnes 
5915615d1e5SSatish Balay #undef __FUNC__
5925615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense"
593e1311b90SBarry Smith int MatView_MPIDense(Mat mat,Viewer viewer)
5948965ea79SLois Curfman McInnes {
59539ddd567SLois Curfman McInnes   int          ierr;
596bcd2baecSBarry Smith   ViewerType   vtype;
5978965ea79SLois Curfman McInnes 
598bcd2baecSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
5993f1db9ecSBarry Smith   if (PetscTypeCompare(vtype,ASCII_VIEWER)) {
60039ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
6013f1db9ecSBarry Smith   } else if (PetscTypeCompare(vtype,BINARY_VIEWER)) {
6023a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
6035cd90555SBarry Smith   } else {
6045cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
6058965ea79SLois Curfman McInnes   }
6063a40ed3dSBarry Smith   PetscFunctionReturn(0);
6078965ea79SLois Curfman McInnes }
6088965ea79SLois Curfman McInnes 
6095615d1e5SSatish Balay #undef __FUNC__
6105615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense"
6118f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6128965ea79SLois Curfman McInnes {
6133501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6143501a2bdSLois Curfman McInnes   Mat          mdn = mat->A;
6154e220ebcSLois Curfman McInnes   int          ierr;
6164e220ebcSLois Curfman McInnes   double       isend[5], irecv[5];
6178965ea79SLois Curfman McInnes 
6183a40ed3dSBarry Smith   PetscFunctionBegin;
6194e220ebcSLois Curfman McInnes   info->rows_global    = (double)mat->M;
6204e220ebcSLois Curfman McInnes   info->columns_global = (double)mat->N;
6214e220ebcSLois Curfman McInnes   info->rows_local     = (double)mat->m;
6224e220ebcSLois Curfman McInnes   info->columns_local  = (double)mat->N;
6234e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
6244e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr);
6254e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6264e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6278965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6284e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
6294e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
6304e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
6314e220ebcSLois Curfman McInnes     info->memory       = isend[3];
6324e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
6338965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
634f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr);
6354e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6364e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6374e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6384e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6394e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6408965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
641f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
6424e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6434e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6444e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6454e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6464e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6478965ea79SLois Curfman McInnes   }
6484e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
6494e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
6504e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
6513a40ed3dSBarry Smith   PetscFunctionReturn(0);
6528965ea79SLois Curfman McInnes }
6538965ea79SLois Curfman McInnes 
6548c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*);
6558aaee692SLois Curfman McInnes    extern int MatLUFactorNumeric_MPIDense(Mat,Mat*);
6568aaee692SLois Curfman McInnes    extern int MatLUFactor_MPIDense(Mat,IS,IS,double);
6578aaee692SLois Curfman McInnes    extern int MatSolve_MPIDense(Mat,Vec,Vec);
6588c469469SLois Curfman McInnes    extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec);
6598aaee692SLois Curfman McInnes    extern int MatSolveTrans_MPIDense(Mat,Vec,Vec);
6608aaee692SLois Curfman McInnes    extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */
6618aaee692SLois Curfman McInnes 
6625615d1e5SSatish Balay #undef __FUNC__
6635615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense"
6648f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op)
6658965ea79SLois Curfman McInnes {
66639ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
6678965ea79SLois Curfman McInnes 
6683a40ed3dSBarry Smith   PetscFunctionBegin;
6696d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
6706d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
6714787f768SSatish Balay       op == MAT_NEW_NONZERO_LOCATION_ERR ||
6724787f768SSatish Balay       op == MAT_NEW_NONZERO_ALLOCATION_ERR ||
673219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
674219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED) {
675b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
676b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
677aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
6788965ea79SLois Curfman McInnes         MatSetOption(a->A,op);
679b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
680219d9a1aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
6816d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
6826d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
683b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
684b51ba29fSSatish Balay              op == MAT_USE_HASH_TABLE) {
685981c4779SBarry Smith     PLogInfo(A,"MatSetOption_MPIDense:Option ignored\n");
6863a40ed3dSBarry Smith   } else if (op == MAT_COLUMN_ORIENTED) {
6873a40ed3dSBarry Smith     a->roworiented = 0; MatSetOption(a->A,op);
6883a40ed3dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
6893a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
6903a40ed3dSBarry Smith   } else {
6913a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
6923a40ed3dSBarry Smith   }
6933a40ed3dSBarry Smith   PetscFunctionReturn(0);
6948965ea79SLois Curfman McInnes }
6958965ea79SLois Curfman McInnes 
6965615d1e5SSatish Balay #undef __FUNC__
6975615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense"
6988f6be9afSLois Curfman McInnes int MatGetSize_MPIDense(Mat A,int *m,int *n)
6998965ea79SLois Curfman McInnes {
7003501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7013a40ed3dSBarry Smith 
7023a40ed3dSBarry Smith   PetscFunctionBegin;
7038965ea79SLois Curfman McInnes   *m = mat->M; *n = mat->N;
7043a40ed3dSBarry Smith   PetscFunctionReturn(0);
7058965ea79SLois Curfman McInnes }
7068965ea79SLois Curfman McInnes 
7075615d1e5SSatish Balay #undef __FUNC__
7085615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense"
7098f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIDense(Mat A,int *m,int *n)
7108965ea79SLois Curfman McInnes {
7113501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7123a40ed3dSBarry Smith 
7133a40ed3dSBarry Smith   PetscFunctionBegin;
7148965ea79SLois Curfman McInnes   *m = mat->m; *n = mat->N;
7153a40ed3dSBarry Smith   PetscFunctionReturn(0);
7168965ea79SLois Curfman McInnes }
7178965ea79SLois Curfman McInnes 
7185615d1e5SSatish Balay #undef __FUNC__
7195615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense"
7208f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n)
7218965ea79SLois Curfman McInnes {
7223501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7233a40ed3dSBarry Smith 
7243a40ed3dSBarry Smith   PetscFunctionBegin;
7258965ea79SLois Curfman McInnes   *m = mat->rstart; *n = mat->rend;
7263a40ed3dSBarry Smith   PetscFunctionReturn(0);
7278965ea79SLois Curfman McInnes }
7288965ea79SLois Curfman McInnes 
7295615d1e5SSatish Balay #undef __FUNC__
7305615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense"
7318f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v)
7328965ea79SLois Curfman McInnes {
7333501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7343a40ed3dSBarry Smith   int          lrow, rstart = mat->rstart, rend = mat->rend,ierr;
7358965ea79SLois Curfman McInnes 
7363a40ed3dSBarry Smith   PetscFunctionBegin;
737a8c6a408SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,0,"only local rows")
7388965ea79SLois Curfman McInnes   lrow = row - rstart;
7393a40ed3dSBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr);
7403a40ed3dSBarry Smith   PetscFunctionReturn(0);
7418965ea79SLois Curfman McInnes }
7428965ea79SLois Curfman McInnes 
7435615d1e5SSatish Balay #undef __FUNC__
7445615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense"
7458f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v)
7468965ea79SLois Curfman McInnes {
7473a40ed3dSBarry Smith   PetscFunctionBegin;
7480452661fSBarry Smith   if (idx) PetscFree(*idx);
7490452661fSBarry Smith   if (v) PetscFree(*v);
7503a40ed3dSBarry Smith   PetscFunctionReturn(0);
7518965ea79SLois Curfman McInnes }
7528965ea79SLois Curfman McInnes 
7535615d1e5SSatish Balay #undef __FUNC__
7545615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense"
7558f6be9afSLois Curfman McInnes int MatNorm_MPIDense(Mat A,NormType type,double *norm)
756096963f5SLois Curfman McInnes {
7573501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
7583501a2bdSLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
7593501a2bdSLois Curfman McInnes   int          ierr, i, j;
7603501a2bdSLois Curfman McInnes   double       sum = 0.0;
7613501a2bdSLois Curfman McInnes   Scalar       *v = mat->v;
7623501a2bdSLois Curfman McInnes 
7633a40ed3dSBarry Smith   PetscFunctionBegin;
7643501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
7653501a2bdSLois Curfman McInnes     ierr =  MatNorm(mdn->A,type,norm); CHKERRQ(ierr);
7663501a2bdSLois Curfman McInnes   } else {
7673501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
7683501a2bdSLois Curfman McInnes       for (i=0; i<mat->n*mat->m; i++ ) {
7693a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
770e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
7713501a2bdSLois Curfman McInnes #else
7723501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
7733501a2bdSLois Curfman McInnes #endif
7743501a2bdSLois Curfman McInnes       }
775ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
7763501a2bdSLois Curfman McInnes       *norm = sqrt(*norm);
7773501a2bdSLois Curfman McInnes       PLogFlops(2*mat->n*mat->m);
7783a40ed3dSBarry Smith     } else if (type == NORM_1) {
7793501a2bdSLois Curfman McInnes       double *tmp, *tmp2;
7800452661fSBarry Smith       tmp  = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp);
7813501a2bdSLois Curfman McInnes       tmp2 = tmp + mdn->N;
782cddf8d76SBarry Smith       PetscMemzero(tmp,2*mdn->N*sizeof(double));
783096963f5SLois Curfman McInnes       *norm = 0.0;
7843501a2bdSLois Curfman McInnes       v = mat->v;
7853501a2bdSLois Curfman McInnes       for ( j=0; j<mat->n; j++ ) {
7863501a2bdSLois Curfman McInnes         for ( i=0; i<mat->m; i++ ) {
78767e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
7883501a2bdSLois Curfman McInnes         }
7893501a2bdSLois Curfman McInnes       }
790ca161407SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
7913501a2bdSLois Curfman McInnes       for ( j=0; j<mdn->N; j++ ) {
7923501a2bdSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
7933501a2bdSLois Curfman McInnes       }
7940452661fSBarry Smith       PetscFree(tmp);
7953501a2bdSLois Curfman McInnes       PLogFlops(mat->n*mat->m);
7963a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
7973501a2bdSLois Curfman McInnes       double ntemp;
7983501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr);
799ca161407SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr);
8003a40ed3dSBarry Smith     } else {
801a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for two norm");
8023501a2bdSLois Curfman McInnes     }
8033501a2bdSLois Curfman McInnes   }
8043a40ed3dSBarry Smith   PetscFunctionReturn(0);
8053501a2bdSLois Curfman McInnes }
8063501a2bdSLois Curfman McInnes 
8075615d1e5SSatish Balay #undef __FUNC__
8085615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense"
8098f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout)
8103501a2bdSLois Curfman McInnes {
8113501a2bdSLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
8123501a2bdSLois Curfman McInnes   Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data;
8133501a2bdSLois Curfman McInnes   Mat          B;
8143501a2bdSLois Curfman McInnes   int          M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart;
8153501a2bdSLois Curfman McInnes   int          j, i, ierr;
8163501a2bdSLois Curfman McInnes   Scalar       *v;
8173501a2bdSLois Curfman McInnes 
8183a40ed3dSBarry Smith   PetscFunctionBegin;
8197056b6fcSBarry Smith   if (matout == PETSC_NULL && M != N) {
820a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"Supports square matrix only in-place");
8217056b6fcSBarry Smith   }
8227056b6fcSBarry Smith   ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr);
8233501a2bdSLois Curfman McInnes 
8243501a2bdSLois Curfman McInnes   m = Aloc->m; n = Aloc->n; v = Aloc->v;
8250452661fSBarry Smith   rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork);
8263501a2bdSLois Curfman McInnes   for ( j=0; j<n; j++ ) {
8273501a2bdSLois Curfman McInnes     for (i=0; i<m; i++) rwork[i] = rstart + i;
8283501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr);
8293501a2bdSLois Curfman McInnes     v   += m;
8303501a2bdSLois Curfman McInnes   }
8310452661fSBarry Smith   PetscFree(rwork);
8326d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8336d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8343638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
8353501a2bdSLois Curfman McInnes     *matout = B;
8363501a2bdSLois Curfman McInnes   } else {
837f830108cSBarry Smith     PetscOps *Abops;
83809dc0095SBarry Smith     MatOps   Aops;
839f830108cSBarry Smith 
8403501a2bdSLois Curfman McInnes     /* This isn't really an in-place transpose, but free data struct from a */
8410452661fSBarry Smith     PetscFree(a->rowners);
8423501a2bdSLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
8433501a2bdSLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
8443501a2bdSLois Curfman McInnes     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
8450452661fSBarry Smith     PetscFree(a);
846f830108cSBarry Smith 
847f830108cSBarry Smith     /*
848f830108cSBarry Smith          This is horrible, horrible code. We need to keep the
849f830108cSBarry Smith       A pointers for the bops and ops but copy everything
850f830108cSBarry Smith       else from C.
851f830108cSBarry Smith     */
852f830108cSBarry Smith     Abops = A->bops;
853f830108cSBarry Smith     Aops  = A->ops;
854f09e8eb9SSatish Balay     PetscMemcpy(A,B,sizeof(struct _p_Mat));
855f830108cSBarry Smith     A->bops = Abops;
856f830108cSBarry Smith     A->ops  = Aops;
857f830108cSBarry Smith 
8580452661fSBarry Smith     PetscHeaderDestroy(B);
8593501a2bdSLois Curfman McInnes   }
8603a40ed3dSBarry Smith   PetscFunctionReturn(0);
861096963f5SLois Curfman McInnes }
862096963f5SLois Curfman McInnes 
863eadb2fb4SBarry Smith #include "pinclude/blaslapack.h"
8645615d1e5SSatish Balay #undef __FUNC__
8655615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense"
8668f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA)
86744cd7ae7SLois Curfman McInnes {
86844cd7ae7SLois Curfman McInnes   Mat_MPIDense *A = (Mat_MPIDense *) inA->data;
86944cd7ae7SLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense *) A->A->data;
87044cd7ae7SLois Curfman McInnes   int          one = 1, nz;
87144cd7ae7SLois Curfman McInnes 
8723a40ed3dSBarry Smith   PetscFunctionBegin;
87344cd7ae7SLois Curfman McInnes   nz = a->m*a->n;
87444cd7ae7SLois Curfman McInnes   BLscal_( &nz, alpha, a->v, &one );
87544cd7ae7SLois Curfman McInnes   PLogFlops(nz);
8763a40ed3dSBarry Smith   PetscFunctionReturn(0);
87744cd7ae7SLois Curfman McInnes }
87844cd7ae7SLois Curfman McInnes 
8795609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
8807b2a1423SBarry Smith extern int MatGetSubMatrices_MPIDense(Mat,int,IS *,IS *,MatReuse,Mat **);
8818965ea79SLois Curfman McInnes 
8828965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
88309dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
88409dc0095SBarry Smith        MatGetRow_MPIDense,
88509dc0095SBarry Smith        MatRestoreRow_MPIDense,
88609dc0095SBarry Smith        MatMult_MPIDense,
88709dc0095SBarry Smith        MatMultAdd_MPIDense,
88809dc0095SBarry Smith        MatMultTrans_MPIDense,
88909dc0095SBarry Smith        MatMultTransAdd_MPIDense,
8908965ea79SLois Curfman McInnes        0,
89109dc0095SBarry Smith        0,
89209dc0095SBarry Smith        0,
89309dc0095SBarry Smith        0,
89409dc0095SBarry Smith        0,
89509dc0095SBarry Smith        0,
89609dc0095SBarry Smith        0,
89709dc0095SBarry Smith        MatTranspose_MPIDense,
89809dc0095SBarry Smith        MatGetInfo_MPIDense,0,
89909dc0095SBarry Smith        MatGetDiagonal_MPIDense,
90009dc0095SBarry Smith        0,
90109dc0095SBarry Smith        MatNorm_MPIDense,
90209dc0095SBarry Smith        MatAssemblyBegin_MPIDense,
90309dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
90409dc0095SBarry Smith        0,
90509dc0095SBarry Smith        MatSetOption_MPIDense,
90609dc0095SBarry Smith        MatZeroEntries_MPIDense,
90709dc0095SBarry Smith        MatZeroRows_MPIDense,
90809dc0095SBarry Smith        0,
90909dc0095SBarry Smith        0,
91009dc0095SBarry Smith        0,
91109dc0095SBarry Smith        0,
91209dc0095SBarry Smith        MatGetSize_MPIDense,
91309dc0095SBarry Smith        MatGetLocalSize_MPIDense,
91439ddd567SLois Curfman McInnes        MatGetOwnershipRange_MPIDense,
91509dc0095SBarry Smith        0,
91609dc0095SBarry Smith        0,
91709dc0095SBarry Smith        MatGetArray_MPIDense,
91809dc0095SBarry Smith        MatRestoreArray_MPIDense,
9195609ef8eSBarry Smith        MatDuplicate_MPIDense,
92009dc0095SBarry Smith        0,
92109dc0095SBarry Smith        0,
92209dc0095SBarry Smith        0,
92309dc0095SBarry Smith        0,
92409dc0095SBarry Smith        0,
9252ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
92609dc0095SBarry Smith        0,
92709dc0095SBarry Smith        MatGetValues_MPIDense,
92809dc0095SBarry Smith        0,
92909dc0095SBarry Smith        0,
93009dc0095SBarry Smith        MatScale_MPIDense,
93109dc0095SBarry Smith        0,
93209dc0095SBarry Smith        0,
93309dc0095SBarry Smith        0,
93409dc0095SBarry Smith        MatGetBlockSize_MPIDense,
93509dc0095SBarry Smith        0,
93609dc0095SBarry Smith        0,
93709dc0095SBarry Smith        0,
93809dc0095SBarry Smith        0,
93909dc0095SBarry Smith        0,
94009dc0095SBarry Smith        0,
94109dc0095SBarry Smith        0,
94209dc0095SBarry Smith        0,
94309dc0095SBarry Smith        0,
94409dc0095SBarry Smith        0,
94509dc0095SBarry Smith        0,
94609dc0095SBarry Smith        0,
94709dc0095SBarry Smith        MatGetMaps_Petsc};
9488965ea79SLois Curfman McInnes 
9495615d1e5SSatish Balay #undef __FUNC__
9505615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense"
9518965ea79SLois Curfman McInnes /*@C
95239ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
9538965ea79SLois Curfman McInnes 
954db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
955db81eaa0SLois Curfman McInnes 
9568965ea79SLois Curfman McInnes    Input Parameters:
957db81eaa0SLois Curfman McInnes +  comm - MPI communicator
9588965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
959db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
9608965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
961db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
962db81eaa0SLois Curfman McInnes -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
963dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
9648965ea79SLois Curfman McInnes 
9658965ea79SLois Curfman McInnes    Output Parameter:
966477f1c0bSLois Curfman McInnes .  A - the matrix
9678965ea79SLois Curfman McInnes 
968b259b22eSLois Curfman McInnes    Notes:
96939ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
97039ddd567SLois Curfman McInnes    storage by columns.
9718965ea79SLois Curfman McInnes 
97218f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
97318f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
974b4fd4287SBarry Smith    set data=PETSC_NULL.
97518f449edSLois Curfman McInnes 
9768965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
9778965ea79SLois Curfman McInnes    (possibly both).
9788965ea79SLois Curfman McInnes 
9793501a2bdSLois Curfman McInnes    Currently, the only parallel dense matrix decomposition is by rows,
9803501a2bdSLois Curfman McInnes    so that n=N and each submatrix owns all of the global columns.
9813501a2bdSLois Curfman McInnes 
982027ccd11SLois Curfman McInnes    Level: intermediate
983027ccd11SLois Curfman McInnes 
98439ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel
9858965ea79SLois Curfman McInnes 
98639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
9878965ea79SLois Curfman McInnes @*/
988477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A)
9898965ea79SLois Curfman McInnes {
9908965ea79SLois Curfman McInnes   Mat          mat;
99139ddd567SLois Curfman McInnes   Mat_MPIDense *a;
99225cdf11fSBarry Smith   int          ierr, i,flg;
9938965ea79SLois Curfman McInnes 
9943a40ed3dSBarry Smith   PetscFunctionBegin;
995ed2daf61SLois Curfman McInnes   /* Note:  For now, when data is specified above, this assumes the user correctly
996ed2daf61SLois Curfman McInnes    allocates the local dense storage space.  We should add error checking. */
99718f449edSLois Curfman McInnes 
998477f1c0bSLois Curfman McInnes   *A = 0;
9993f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",comm,MatDestroy,MatView);
10008965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
10010452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
100209dc0095SBarry Smith   PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));
1003e1311b90SBarry Smith   mat->ops->destroy    = MatDestroy_MPIDense;
1004e1311b90SBarry Smith   mat->ops->view       = MatView_MPIDense;
10058965ea79SLois Curfman McInnes   mat->factor          = 0;
100690f02eecSBarry Smith   mat->mapping         = 0;
10078965ea79SLois Curfman McInnes 
1008622d7880SLois Curfman McInnes   a->factor       = 0;
1009e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
10108965ea79SLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
10118965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
10128965ea79SLois Curfman McInnes 
101396f6c058SBarry Smith   ierr = PetscSplitOwnership(comm,&m,&M);CHKERRQ(ierr);
101439ddd567SLois Curfman McInnes 
1015c7fcc2eaSBarry Smith   /*
1016c7fcc2eaSBarry Smith      The computation of n is wrong below, n should represent the number of local
1017c7fcc2eaSBarry Smith      rows in the right (column vector)
1018c7fcc2eaSBarry Smith   */
1019c7fcc2eaSBarry Smith 
102039ddd567SLois Curfman McInnes   /* each row stores all columns */
102139ddd567SLois Curfman McInnes   if (N == PETSC_DECIDE) N = n;
1022d7e8b826SBarry Smith   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1023a8c6a408SBarry Smith   /*  if (n != N) SETERRQ(PETSC_ERR_SUP,0,"For now, only n=N is supported"); */
1024aca0ad90SLois Curfman McInnes   a->N = mat->N = N;
1025aca0ad90SLois Curfman McInnes   a->M = mat->M = M;
1026aca0ad90SLois Curfman McInnes   a->m = mat->m = m;
1027aca0ad90SLois Curfman McInnes   a->n = mat->n = n;
10288965ea79SLois Curfman McInnes 
1029c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
1030c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
1031488ecbafSBarry Smith   ierr = MapCreateMPI(comm,m,M,&mat->rmap);CHKERRQ(ierr);
103296f6c058SBarry Smith   ierr = MapCreateMPI(comm,PETSC_DECIDE,N,&mat->cmap);CHKERRQ(ierr);
1033c7fcc2eaSBarry Smith 
10348965ea79SLois Curfman McInnes   /* build local table of row and column ownerships */
1035d7e8b826SBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
1036d7e8b826SBarry Smith   a->cowners = a->rowners + a->size + 1;
1037f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
1038ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
10398965ea79SLois Curfman McInnes   a->rowners[0] = 0;
10408965ea79SLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
10418965ea79SLois Curfman McInnes     a->rowners[i] += a->rowners[i-1];
10428965ea79SLois Curfman McInnes   }
10438965ea79SLois Curfman McInnes   a->rstart = a->rowners[a->rank];
10448965ea79SLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1045ca161407SBarry Smith   ierr      = MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1046d7e8b826SBarry Smith   a->cowners[0] = 0;
1047d7e8b826SBarry Smith   for ( i=2; i<=a->size; i++ ) {
1048d7e8b826SBarry Smith     a->cowners[i] += a->cowners[i-1];
1049d7e8b826SBarry Smith   }
10508965ea79SLois Curfman McInnes 
1051029af93fSBarry Smith   ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr);
10528965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
10538965ea79SLois Curfman McInnes 
10548965ea79SLois Curfman McInnes   /* build cache for off array entries formed */
1055*bc5ccf88SSatish Balay   ierr = StashCreate_Private(comm,1,&a->stash); CHKERRQ(ierr);
10568965ea79SLois Curfman McInnes 
10578965ea79SLois Curfman McInnes   /* stuff used for matrix vector multiply */
10588965ea79SLois Curfman McInnes   a->lvec        = 0;
10598965ea79SLois Curfman McInnes   a->Mvctx       = 0;
106039b7565bSBarry Smith   a->roworiented = 1;
10618965ea79SLois Curfman McInnes 
1062477f1c0bSLois Curfman McInnes   *A = mat;
106325cdf11fSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
106425cdf11fSBarry Smith   if (flg) {
10658c469469SLois Curfman McInnes     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
10668c469469SLois Curfman McInnes   }
10673a40ed3dSBarry Smith   PetscFunctionReturn(0);
10688965ea79SLois Curfman McInnes }
10698965ea79SLois Curfman McInnes 
10705615d1e5SSatish Balay #undef __FUNC__
10715609ef8eSBarry Smith #define __FUNC__ "MatDuplicate_MPIDense"
10725609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
10738965ea79SLois Curfman McInnes {
10748965ea79SLois Curfman McInnes   Mat          mat;
10753501a2bdSLois Curfman McInnes   Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data;
107639ddd567SLois Curfman McInnes   int          ierr;
10772ba99913SLois Curfman McInnes   FactorCtx    *factor;
10788965ea79SLois Curfman McInnes 
10793a40ed3dSBarry Smith   PetscFunctionBegin;
10808965ea79SLois Curfman McInnes   *newmat       = 0;
10813f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",A->comm,MatDestroy,MatView);
10828965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
10830452661fSBarry Smith   mat->data      = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
108409dc0095SBarry Smith   PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));
1085e1311b90SBarry Smith   mat->ops->destroy   = MatDestroy_MPIDense;
1086e1311b90SBarry Smith   mat->ops->view      = MatView_MPIDense;
10873501a2bdSLois Curfman McInnes   mat->factor         = A->factor;
1088c456f294SBarry Smith   mat->assembled      = PETSC_TRUE;
10898965ea79SLois Curfman McInnes 
109044cd7ae7SLois Curfman McInnes   a->m = mat->m = oldmat->m;
109144cd7ae7SLois Curfman McInnes   a->n = mat->n = oldmat->n;
109244cd7ae7SLois Curfman McInnes   a->M = mat->M = oldmat->M;
109344cd7ae7SLois Curfman McInnes   a->N = mat->N = oldmat->N;
10942ba99913SLois Curfman McInnes   if (oldmat->factor) {
10952ba99913SLois Curfman McInnes     a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor);
10962ba99913SLois Curfman McInnes     /* copy factor contents ... add this code! */
10972ba99913SLois Curfman McInnes   } else a->factor = 0;
10988965ea79SLois Curfman McInnes 
10998965ea79SLois Curfman McInnes   a->rstart       = oldmat->rstart;
11008965ea79SLois Curfman McInnes   a->rend         = oldmat->rend;
11018965ea79SLois Curfman McInnes   a->size         = oldmat->size;
11028965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1103e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
11048965ea79SLois Curfman McInnes 
11050452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
1106f09e8eb9SSatish Balay   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
11078965ea79SLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1108*bc5ccf88SSatish Balay   ierr = StashCreate_Private(A->comm,1,&a->stash); CHKERRQ(ierr);
11098965ea79SLois Curfman McInnes 
11108965ea79SLois Curfman McInnes   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
11118965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->lvec);
111255659b69SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
11138965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->Mvctx);
11145609ef8eSBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A); CHKERRQ(ierr);
11158965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
11168965ea79SLois Curfman McInnes   *newmat = mat;
11173a40ed3dSBarry Smith   PetscFunctionReturn(0);
11188965ea79SLois Curfman McInnes }
11198965ea79SLois Curfman McInnes 
112077c4ece6SBarry Smith #include "sys.h"
11218965ea79SLois Curfman McInnes 
11225615d1e5SSatish Balay #undef __FUNC__
11235615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile"
112490ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat)
112590ace30eSBarry Smith {
112640011551SBarry Smith   int        *rowners, i,size,rank,m,ierr,nz,j;
112790ace30eSBarry Smith   Scalar     *array,*vals,*vals_ptr;
112890ace30eSBarry Smith   MPI_Status status;
112990ace30eSBarry Smith 
11303a40ed3dSBarry Smith   PetscFunctionBegin;
113190ace30eSBarry Smith   MPI_Comm_rank(comm,&rank);
113290ace30eSBarry Smith   MPI_Comm_size(comm,&size);
113390ace30eSBarry Smith 
113490ace30eSBarry Smith   /* determine ownership of all rows */
113590ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
113690ace30eSBarry Smith   rowners    = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1137ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
113890ace30eSBarry Smith   rowners[0] = 0;
113990ace30eSBarry Smith   for ( i=2; i<=size; i++ ) {
114090ace30eSBarry Smith     rowners[i] += rowners[i-1];
114190ace30eSBarry Smith   }
114290ace30eSBarry Smith 
114390ace30eSBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
114490ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr);
114590ace30eSBarry Smith 
114690ace30eSBarry Smith   if (!rank) {
114790ace30eSBarry Smith     vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
114890ace30eSBarry Smith 
114990ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
11500752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR); CHKERRQ(ierr);
115190ace30eSBarry Smith 
115290ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
115390ace30eSBarry Smith     vals_ptr = vals;
115490ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
115590ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
115690ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
115790ace30eSBarry Smith       }
115890ace30eSBarry Smith     }
115990ace30eSBarry Smith 
116090ace30eSBarry Smith     /* read in other processors and ship out */
116190ace30eSBarry Smith     for ( i=1; i<size; i++ ) {
116290ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
11630752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1164ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr);
116590ace30eSBarry Smith     }
11663a40ed3dSBarry Smith   } else {
116790ace30eSBarry Smith     /* receive numeric values */
116890ace30eSBarry Smith     vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
116990ace30eSBarry Smith 
117090ace30eSBarry Smith     /* receive message of values*/
1171ca161407SBarry Smith     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr);
117290ace30eSBarry Smith 
117390ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
117490ace30eSBarry Smith     vals_ptr = vals;
117590ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
117690ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
117790ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
117890ace30eSBarry Smith       }
117990ace30eSBarry Smith     }
118090ace30eSBarry Smith   }
118190ace30eSBarry Smith   PetscFree(rowners);
118290ace30eSBarry Smith   PetscFree(vals);
11836d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
11846d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
11853a40ed3dSBarry Smith   PetscFunctionReturn(0);
118690ace30eSBarry Smith }
118790ace30eSBarry Smith 
118890ace30eSBarry Smith 
11895615d1e5SSatish Balay #undef __FUNC__
11905615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense"
119119bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat)
11928965ea79SLois Curfman McInnes {
11938965ea79SLois Curfman McInnes   Mat          A;
11948965ea79SLois Curfman McInnes   Scalar       *vals,*svals;
119519bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
11968965ea79SLois Curfman McInnes   MPI_Status   status;
11978965ea79SLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
11988965ea79SLois Curfman McInnes   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
119919bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
12003a40ed3dSBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
12018965ea79SLois Curfman McInnes 
12023a40ed3dSBarry Smith   PetscFunctionBegin;
12038965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
12048965ea79SLois Curfman McInnes   if (!rank) {
120590ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
12060752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
1207a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
12088965ea79SLois Curfman McInnes   }
12098965ea79SLois Curfman McInnes 
1210ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
121190ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
121290ace30eSBarry Smith 
121390ace30eSBarry Smith   /*
121490ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
121590ace30eSBarry Smith   */
121690ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
12173a40ed3dSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
12183a40ed3dSBarry Smith     PetscFunctionReturn(0);
121990ace30eSBarry Smith   }
122090ace30eSBarry Smith 
12218965ea79SLois Curfman McInnes   /* determine ownership of all rows */
12228965ea79SLois Curfman McInnes   m          = M/size + ((M % size) > rank);
12230452661fSBarry Smith   rowners    = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1224ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
12258965ea79SLois Curfman McInnes   rowners[0] = 0;
12268965ea79SLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
12278965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
12288965ea79SLois Curfman McInnes   }
12298965ea79SLois Curfman McInnes   rstart = rowners[rank];
12308965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
12318965ea79SLois Curfman McInnes 
12328965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
12330452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
12348965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
12358965ea79SLois Curfman McInnes   if (!rank) {
12360452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
12370752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
12380452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
12398965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1240ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
12410452661fSBarry Smith     PetscFree(sndcounts);
1242ca161407SBarry Smith   } else {
1243ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr);
12448965ea79SLois Curfman McInnes   }
12458965ea79SLois Curfman McInnes 
12468965ea79SLois Curfman McInnes   if (!rank) {
12478965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
12480452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1249cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
12508965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
12518965ea79SLois Curfman McInnes       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
12528965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
12538965ea79SLois Curfman McInnes       }
12548965ea79SLois Curfman McInnes     }
12550452661fSBarry Smith     PetscFree(rowlengths);
12568965ea79SLois Curfman McInnes 
12578965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
12588965ea79SLois Curfman McInnes     maxnz = 0;
12598965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
12600452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
12618965ea79SLois Curfman McInnes     }
12620452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
12638965ea79SLois Curfman McInnes 
12648965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
12658965ea79SLois Curfman McInnes     nz = procsnz[0];
12660452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
12670752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
12688965ea79SLois Curfman McInnes 
12698965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
12708965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
12718965ea79SLois Curfman McInnes       nz   = procsnz[i];
12720752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
1273ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
12748965ea79SLois Curfman McInnes     }
12750452661fSBarry Smith     PetscFree(cols);
12763a40ed3dSBarry Smith   } else {
12778965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
12788965ea79SLois Curfman McInnes     nz = 0;
12798965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
12808965ea79SLois Curfman McInnes       nz += ourlens[i];
12818965ea79SLois Curfman McInnes     }
12820452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
12838965ea79SLois Curfman McInnes 
12848965ea79SLois Curfman McInnes     /* receive message of column indices*/
1285ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1286ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
1287a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
12888965ea79SLois Curfman McInnes   }
12898965ea79SLois Curfman McInnes 
12908965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
1291cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
12928965ea79SLois Curfman McInnes   jj = 0;
12938965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12948965ea79SLois Curfman McInnes     for ( j=0; j<ourlens[i]; j++ ) {
12958965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
12968965ea79SLois Curfman McInnes       jj++;
12978965ea79SLois Curfman McInnes     }
12988965ea79SLois Curfman McInnes   }
12998965ea79SLois Curfman McInnes 
13008965ea79SLois Curfman McInnes   /* create our matrix */
13018965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
13028965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
13038965ea79SLois Curfman McInnes   }
1304b4fd4287SBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
13058965ea79SLois Curfman McInnes   A = *newmat;
13068965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
13078965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
13088965ea79SLois Curfman McInnes   }
13098965ea79SLois Curfman McInnes 
13108965ea79SLois Curfman McInnes   if (!rank) {
13110452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
13128965ea79SLois Curfman McInnes 
13138965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
13148965ea79SLois Curfman McInnes     nz = procsnz[0];
13150752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
13168965ea79SLois Curfman McInnes 
13178965ea79SLois Curfman McInnes     /* insert into matrix */
13188965ea79SLois Curfman McInnes     jj      = rstart;
13198965ea79SLois Curfman McInnes     smycols = mycols;
13208965ea79SLois Curfman McInnes     svals   = vals;
13218965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
13228965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
13238965ea79SLois Curfman McInnes       smycols += ourlens[i];
13248965ea79SLois Curfman McInnes       svals   += ourlens[i];
13258965ea79SLois Curfman McInnes       jj++;
13268965ea79SLois Curfman McInnes     }
13278965ea79SLois Curfman McInnes 
13288965ea79SLois Curfman McInnes     /* read in other processors and ship out */
13298965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
13308965ea79SLois Curfman McInnes       nz   = procsnz[i];
13310752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1332ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
13338965ea79SLois Curfman McInnes     }
13340452661fSBarry Smith     PetscFree(procsnz);
13353a40ed3dSBarry Smith   } else {
13368965ea79SLois Curfman McInnes     /* receive numeric values */
13370452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
13388965ea79SLois Curfman McInnes 
13398965ea79SLois Curfman McInnes     /* receive message of values*/
1340ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1341ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
1342a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
13438965ea79SLois Curfman McInnes 
13448965ea79SLois Curfman McInnes     /* insert into matrix */
13458965ea79SLois Curfman McInnes     jj      = rstart;
13468965ea79SLois Curfman McInnes     smycols = mycols;
13478965ea79SLois Curfman McInnes     svals   = vals;
13488965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
13498965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
13508965ea79SLois Curfman McInnes       smycols += ourlens[i];
13518965ea79SLois Curfman McInnes       svals   += ourlens[i];
13528965ea79SLois Curfman McInnes       jj++;
13538965ea79SLois Curfman McInnes     }
13548965ea79SLois Curfman McInnes   }
13550452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
13568965ea79SLois Curfman McInnes 
13576d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
13586d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
13593a40ed3dSBarry Smith   PetscFunctionReturn(0);
13608965ea79SLois Curfman McInnes }
136190ace30eSBarry Smith 
136290ace30eSBarry Smith 
136390ace30eSBarry Smith 
136490ace30eSBarry Smith 
136590ace30eSBarry Smith 
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