xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision c2653b3d308917c4b5698e5f59fd76add26d7f41)
18965ea79SLois Curfman McInnes #ifndef lint
2*c2653b3dSLois Curfman McInnes static char vcid[] = "$Id: mpidense.c,v 1.66 1997/03/09 17:58:12 curfman Exp bsmith $";
38965ea79SLois Curfman McInnes #endif
48965ea79SLois Curfman McInnes 
5ed3cc1f0SBarry Smith /*
6ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
7ed3cc1f0SBarry Smith */
8ed3cc1f0SBarry Smith 
970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"
10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
118965ea79SLois Curfman McInnes 
125615d1e5SSatish Balay #undef __FUNC__
135615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense"
147056b6fcSBarry Smith static int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv)
158965ea79SLois Curfman McInnes {
1639b7565bSBarry Smith   Mat_MPIDense *A = (Mat_MPIDense *) mat->data;
1739b7565bSBarry Smith   int          ierr, i, j, rstart = A->rstart, rend = A->rend, row;
1839b7565bSBarry Smith   int          roworiented = A->roworiented;
198965ea79SLois Curfman McInnes 
208965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
21e3372554SBarry Smith     if (idxm[i] < 0) SETERRQ(1,0,"Negative row");
22e3372554SBarry Smith     if (idxm[i] >= A->M) SETERRQ(1,0,"Row too large");
238965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
248965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
2539b7565bSBarry Smith       if (roworiented) {
2639b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr);
2739b7565bSBarry Smith       }
2839b7565bSBarry Smith       else {
298965ea79SLois Curfman McInnes         for ( j=0; j<n; j++ ) {
30e3372554SBarry Smith           if (idxn[j] < 0) SETERRQ(1,0,"Negative column");
31e3372554SBarry Smith           if (idxn[j] >= A->N) SETERRQ(1,0,"Column too large");
3239b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr);
3339b7565bSBarry Smith         }
348965ea79SLois Curfman McInnes       }
358965ea79SLois Curfman McInnes     }
368965ea79SLois Curfman McInnes     else {
3739b7565bSBarry Smith       if (roworiented) {
3839b7565bSBarry Smith         ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr);
3939b7565bSBarry Smith       }
4039b7565bSBarry Smith       else { /* must stash each seperately */
4139b7565bSBarry Smith         row = idxm[i];
4239b7565bSBarry Smith         for ( j=0; j<n; j++ ) {
437056b6fcSBarry Smith           ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
4439b7565bSBarry Smith         }
4539b7565bSBarry Smith       }
46b49de8d1SLois Curfman McInnes     }
47b49de8d1SLois Curfman McInnes   }
48b49de8d1SLois Curfman McInnes   return 0;
49b49de8d1SLois Curfman McInnes }
50b49de8d1SLois Curfman McInnes 
515615d1e5SSatish Balay #undef __FUNC__
525615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense"
53b49de8d1SLois Curfman McInnes static int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
54b49de8d1SLois Curfman McInnes {
55b49de8d1SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
56b49de8d1SLois Curfman McInnes   int          ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row;
57b49de8d1SLois Curfman McInnes 
58b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
59e3372554SBarry Smith     if (idxm[i] < 0) SETERRQ(1,0,"Negative row");
60e3372554SBarry Smith     if (idxm[i] >= mdn->M) SETERRQ(1,0,"Row too large");
61b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
62b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
63b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
64e3372554SBarry Smith         if (idxn[j] < 0) SETERRQ(1,0,"Negative column");
65b49de8d1SLois Curfman McInnes         if (idxn[j] >= mdn->N)
66e3372554SBarry Smith           SETERRQ(1,0,"Column too large");
67b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr);
68b49de8d1SLois Curfman McInnes       }
69b49de8d1SLois Curfman McInnes     }
70b49de8d1SLois Curfman McInnes     else {
71e3372554SBarry Smith       SETERRQ(1,0,"Only local values currently supported");
728965ea79SLois Curfman McInnes     }
738965ea79SLois Curfman McInnes   }
748965ea79SLois Curfman McInnes   return 0;
758965ea79SLois Curfman McInnes }
768965ea79SLois Curfman McInnes 
775615d1e5SSatish Balay #undef __FUNC__
785615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense"
79ff14e315SSatish Balay static int MatGetArray_MPIDense(Mat A,Scalar **array)
80ff14e315SSatish Balay {
81ff14e315SSatish Balay   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
82ff14e315SSatish Balay   int ierr;
83ff14e315SSatish Balay 
84ff14e315SSatish Balay   ierr = MatGetArray(a->A,array); CHKERRQ(ierr);
85ff14e315SSatish Balay   return 0;
86ff14e315SSatish Balay }
87ff14e315SSatish Balay 
885615d1e5SSatish Balay #undef __FUNC__
895615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense"
90ff14e315SSatish Balay static int MatRestoreArray_MPIDense(Mat A,Scalar **array)
91ff14e315SSatish Balay {
92ff14e315SSatish Balay   return 0;
93ff14e315SSatish Balay }
94ff14e315SSatish Balay 
955615d1e5SSatish Balay #undef __FUNC__
965615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense"
9739ddd567SLois Curfman McInnes static int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
988965ea79SLois Curfman McInnes {
9939ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1008965ea79SLois Curfman McInnes   MPI_Comm     comm = mat->comm;
10139ddd567SLois Curfman McInnes   int          size = mdn->size, *owners = mdn->rowners, rank = mdn->rank;
1028965ea79SLois Curfman McInnes   int          *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
10339ddd567SLois Curfman McInnes   int          tag = mat->tag, *owner,*starts,count,ierr;
1048965ea79SLois Curfman McInnes   InsertMode   addv;
10539ddd567SLois Curfman McInnes   MPI_Request  *send_waits,*recv_waits;
1068965ea79SLois Curfman McInnes   Scalar       *rvalues,*svalues;
1078965ea79SLois Curfman McInnes 
1088965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
109e0fa3b82SLois Curfman McInnes   MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
1107056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
111e3372554SBarry Smith     SETERRQ(1,0,"Cannot mix adds/inserts on different procs");
1128965ea79SLois Curfman McInnes   }
113e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
1148965ea79SLois Curfman McInnes 
1158965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
1160452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
117cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
1180452661fSBarry Smith   owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
11939ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
12039ddd567SLois Curfman McInnes     idx = mdn->stash.idx[i];
1218965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1228965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
1238965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1248965ea79SLois Curfman McInnes       }
1258965ea79SLois Curfman McInnes     }
1268965ea79SLois Curfman McInnes   }
1278965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1288965ea79SLois Curfman McInnes 
1298965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
1300452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
1316d84be18SBarry Smith   MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm);
1328965ea79SLois Curfman McInnes   nreceives = work[rank];
133e3372554SBarry Smith   if (nreceives > size) SETERRQ(1,0,"Internal PETSc error");
1346d84be18SBarry Smith   MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm);
1358965ea79SLois Curfman McInnes   nmax = work[rank];
1360452661fSBarry Smith   PetscFree(work);
1378965ea79SLois Curfman McInnes 
1388965ea79SLois Curfman McInnes   /* post receives:
1398965ea79SLois Curfman McInnes        1) each message will consist of ordered pairs
1408965ea79SLois Curfman McInnes      (global index,value) we store the global index as a double
1418965ea79SLois Curfman McInnes      to simplify the message passing.
1428965ea79SLois Curfman McInnes        2) since we don't know how long each individual message is we
1438965ea79SLois Curfman McInnes      allocate the largest needed buffer for each receive. Potentially
1448965ea79SLois Curfman McInnes      this is a lot of wasted space.
1458965ea79SLois Curfman McInnes 
1468965ea79SLois Curfman McInnes        This could be done better.
1478965ea79SLois Curfman McInnes   */
1483b2fbd54SBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
1493b2fbd54SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
1508965ea79SLois Curfman McInnes   for ( i=0; i<nreceives; i++ ) {
1517056b6fcSBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
1528965ea79SLois Curfman McInnes   }
1538965ea79SLois Curfman McInnes 
1548965ea79SLois Curfman McInnes   /* do sends:
1558965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
1568965ea79SLois Curfman McInnes          the ith processor
1578965ea79SLois Curfman McInnes   */
1583b2fbd54SBarry Smith   svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
1593b2fbd54SBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
1600452661fSBarry Smith   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
1618965ea79SLois Curfman McInnes   starts[0] = 0;
1628965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16339ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
16439ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]]       = (Scalar)  mdn->stash.idx[i];
16539ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]+1]     = (Scalar)  mdn->stash.idy[i];
16639ddd567SLois Curfman McInnes     svalues[3*(starts[owner[i]]++)+2] =  mdn->stash.array[i];
1678965ea79SLois Curfman McInnes   }
1680452661fSBarry Smith   PetscFree(owner);
1698965ea79SLois Curfman McInnes   starts[0] = 0;
1708965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1718965ea79SLois Curfman McInnes   count = 0;
1728965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1738965ea79SLois Curfman McInnes     if (procs[i]) {
1747056b6fcSBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);
1758965ea79SLois Curfman McInnes     }
1768965ea79SLois Curfman McInnes   }
1770452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
1788965ea79SLois Curfman McInnes 
1798965ea79SLois Curfman McInnes   /* Free cache space */
180d2dc9b81SLois Curfman McInnes   PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n);
18139ddd567SLois Curfman McInnes   ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr);
1828965ea79SLois Curfman McInnes 
18339ddd567SLois Curfman McInnes   mdn->svalues    = svalues;    mdn->rvalues = rvalues;
18439ddd567SLois Curfman McInnes   mdn->nsends     = nsends;     mdn->nrecvs = nreceives;
18539ddd567SLois Curfman McInnes   mdn->send_waits = send_waits; mdn->recv_waits = recv_waits;
18639ddd567SLois Curfman McInnes   mdn->rmax       = nmax;
1878965ea79SLois Curfman McInnes 
1888965ea79SLois Curfman McInnes   return 0;
1898965ea79SLois Curfman McInnes }
19039ddd567SLois Curfman McInnes extern int MatSetUpMultiply_MPIDense(Mat);
1918965ea79SLois Curfman McInnes 
1925615d1e5SSatish Balay #undef __FUNC__
1935615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense"
19439ddd567SLois Curfman McInnes static int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
1958965ea79SLois Curfman McInnes {
19639ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1978965ea79SLois Curfman McInnes   MPI_Status   *send_status,recv_status;
19839ddd567SLois Curfman McInnes   int          imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col;
1998965ea79SLois Curfman McInnes   Scalar       *values,val;
200e0fa3b82SLois Curfman McInnes   InsertMode   addv = mat->insertmode;
2018965ea79SLois Curfman McInnes 
2028965ea79SLois Curfman McInnes   /*  wait on receives */
2038965ea79SLois Curfman McInnes   while (count) {
20439ddd567SLois Curfman McInnes     MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status);
2058965ea79SLois Curfman McInnes     /* unpack receives into our local space */
20639ddd567SLois Curfman McInnes     values = mdn->rvalues + 3*imdex*mdn->rmax;
2078965ea79SLois Curfman McInnes     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2088965ea79SLois Curfman McInnes     n = n/3;
2098965ea79SLois Curfman McInnes     for ( i=0; i<n; i++ ) {
210227d817aSBarry Smith       row = (int) PetscReal(values[3*i]) - mdn->rstart;
211227d817aSBarry Smith       col = (int) PetscReal(values[3*i+1]);
2128965ea79SLois Curfman McInnes       val = values[3*i+2];
21339ddd567SLois Curfman McInnes       if (col >= 0 && col < mdn->N) {
21439ddd567SLois Curfman McInnes         MatSetValues(mdn->A,1,&row,1,&col,&val,addv);
2158965ea79SLois Curfman McInnes       }
216e3372554SBarry Smith       else {SETERRQ(1,0,"Invalid column");}
2178965ea79SLois Curfman McInnes     }
2188965ea79SLois Curfman McInnes     count--;
2198965ea79SLois Curfman McInnes   }
2200452661fSBarry Smith   PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues);
2218965ea79SLois Curfman McInnes 
2228965ea79SLois Curfman McInnes   /* wait on sends */
22339ddd567SLois Curfman McInnes   if (mdn->nsends) {
2247056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
22539ddd567SLois Curfman McInnes     MPI_Waitall(mdn->nsends,mdn->send_waits,send_status);
2260452661fSBarry Smith     PetscFree(send_status);
2278965ea79SLois Curfman McInnes   }
2280452661fSBarry Smith   PetscFree(mdn->send_waits); PetscFree(mdn->svalues);
2298965ea79SLois Curfman McInnes 
23039ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr);
23139ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr);
2328965ea79SLois Curfman McInnes 
2336d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
23439ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr);
2358965ea79SLois Curfman McInnes   }
2368965ea79SLois Curfman McInnes   return 0;
2378965ea79SLois Curfman McInnes }
2388965ea79SLois Curfman McInnes 
2395615d1e5SSatish Balay #undef __FUNC__
2405615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense"
24139ddd567SLois Curfman McInnes static int MatZeroEntries_MPIDense(Mat A)
2428965ea79SLois Curfman McInnes {
24339ddd567SLois Curfman McInnes   Mat_MPIDense *l = (Mat_MPIDense *) A->data;
24439ddd567SLois Curfman McInnes   return MatZeroEntries(l->A);
2458965ea79SLois Curfman McInnes }
2468965ea79SLois Curfman McInnes 
2475615d1e5SSatish Balay #undef __FUNC__
2485615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense"
2494e220ebcSLois Curfman McInnes static int MatGetBlockSize_MPIDense(Mat A,int *bs)
2504e220ebcSLois Curfman McInnes {
2514e220ebcSLois Curfman McInnes   *bs = 1;
2524e220ebcSLois Curfman McInnes   return 0;
2534e220ebcSLois Curfman McInnes }
2544e220ebcSLois Curfman McInnes 
2558965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
2568965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
2578965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
2583501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
2598965ea79SLois Curfman McInnes    routine.
2608965ea79SLois Curfman McInnes */
2615615d1e5SSatish Balay #undef __FUNC__
2625615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense"
26339ddd567SLois Curfman McInnes static int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag)
2648965ea79SLois Curfman McInnes {
26539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense *) A->data;
2668965ea79SLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2678965ea79SLois Curfman McInnes   int            *procs,*nprocs,j,found,idx,nsends,*work;
2688965ea79SLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2698965ea79SLois Curfman McInnes   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
2708965ea79SLois Curfman McInnes   int            *lens,imdex,*lrows,*values;
2718965ea79SLois Curfman McInnes   MPI_Comm       comm = A->comm;
2728965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
2738965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
2748965ea79SLois Curfman McInnes   IS             istmp;
2758965ea79SLois Curfman McInnes 
27677c4ece6SBarry Smith   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
2778965ea79SLois Curfman McInnes   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2788965ea79SLois Curfman McInnes 
2798965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
2800452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
281cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
2820452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2838965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
2848965ea79SLois Curfman McInnes     idx = rows[i];
2858965ea79SLois Curfman McInnes     found = 0;
2868965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2878965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
2888965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2898965ea79SLois Curfman McInnes       }
2908965ea79SLois Curfman McInnes     }
291e3372554SBarry Smith     if (!found) SETERRQ(1,0,"Index out of range");
2928965ea79SLois Curfman McInnes   }
2938965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
2948965ea79SLois Curfman McInnes 
2958965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
2960452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
2978965ea79SLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
2988965ea79SLois Curfman McInnes   nrecvs = work[rank];
2998965ea79SLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
3008965ea79SLois Curfman McInnes   nmax = work[rank];
3010452661fSBarry Smith   PetscFree(work);
3028965ea79SLois Curfman McInnes 
3038965ea79SLois Curfman McInnes   /* post receives:   */
3040452661fSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
3058965ea79SLois Curfman McInnes   CHKPTRQ(rvalues);
3060452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));
3078965ea79SLois Curfman McInnes   CHKPTRQ(recv_waits);
3088965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3098965ea79SLois Curfman McInnes     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3108965ea79SLois Curfman McInnes   }
3118965ea79SLois Curfman McInnes 
3128965ea79SLois Curfman McInnes   /* do sends:
3138965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3148965ea79SLois Curfman McInnes          the ith processor
3158965ea79SLois Curfman McInnes   */
3160452661fSBarry Smith   svalues    = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
3177056b6fcSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
3180452661fSBarry Smith   starts     = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3198965ea79SLois Curfman McInnes   starts[0]  = 0;
3208965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3218965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
3228965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3238965ea79SLois Curfman McInnes   }
3248965ea79SLois Curfman McInnes   ISRestoreIndices(is,&rows);
3258965ea79SLois Curfman McInnes 
3268965ea79SLois Curfman McInnes   starts[0] = 0;
3278965ea79SLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3288965ea79SLois Curfman McInnes   count = 0;
3298965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3308965ea79SLois Curfman McInnes     if (procs[i]) {
3318965ea79SLois Curfman McInnes       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3328965ea79SLois Curfman McInnes     }
3338965ea79SLois Curfman McInnes   }
3340452661fSBarry Smith   PetscFree(starts);
3358965ea79SLois Curfman McInnes 
3368965ea79SLois Curfman McInnes   base = owners[rank];
3378965ea79SLois Curfman McInnes 
3388965ea79SLois Curfman McInnes   /*  wait on receives */
3390452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3408965ea79SLois Curfman McInnes   source = lens + nrecvs;
3418965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
3428965ea79SLois Curfman McInnes   while (count) {
3438965ea79SLois Curfman McInnes     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3448965ea79SLois Curfman McInnes     /* unpack receives into our local space */
3458965ea79SLois Curfman McInnes     MPI_Get_count(&recv_status,MPI_INT,&n);
3468965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
3478965ea79SLois Curfman McInnes     lens[imdex]  = n;
3488965ea79SLois Curfman McInnes     slen += n;
3498965ea79SLois Curfman McInnes     count--;
3508965ea79SLois Curfman McInnes   }
3510452661fSBarry Smith   PetscFree(recv_waits);
3528965ea79SLois Curfman McInnes 
3538965ea79SLois Curfman McInnes   /* move the data into the send scatter */
3540452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3558965ea79SLois Curfman McInnes   count = 0;
3568965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3578965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
3588965ea79SLois Curfman McInnes     for ( j=0; j<lens[i]; j++ ) {
3598965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
3608965ea79SLois Curfman McInnes     }
3618965ea79SLois Curfman McInnes   }
3620452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
3630452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
3648965ea79SLois Curfman McInnes 
3658965ea79SLois Curfman McInnes   /* actually zap the local rows */
366537820f0SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
3678965ea79SLois Curfman McInnes   PLogObjectParent(A,istmp);
3680452661fSBarry Smith   PetscFree(lrows);
3698965ea79SLois Curfman McInnes   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
3708965ea79SLois Curfman McInnes   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3718965ea79SLois Curfman McInnes 
3728965ea79SLois Curfman McInnes   /* wait on sends */
3738965ea79SLois Curfman McInnes   if (nsends) {
3747056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
3758965ea79SLois Curfman McInnes     MPI_Waitall(nsends,send_waits,send_status);
3760452661fSBarry Smith     PetscFree(send_status);
3778965ea79SLois Curfman McInnes   }
3780452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
3798965ea79SLois Curfman McInnes 
3808965ea79SLois Curfman McInnes   return 0;
3818965ea79SLois Curfman McInnes }
3828965ea79SLois Curfman McInnes 
3835615d1e5SSatish Balay #undef __FUNC__
3845615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense"
38539ddd567SLois Curfman McInnes static int MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
3868965ea79SLois Curfman McInnes {
38739ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
3888965ea79SLois Curfman McInnes   int          ierr;
389c456f294SBarry Smith 
39043a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39143a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39244cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr);
3938965ea79SLois Curfman McInnes   return 0;
3948965ea79SLois Curfman McInnes }
3958965ea79SLois Curfman McInnes 
3965615d1e5SSatish Balay #undef __FUNC__
3975615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense"
39839ddd567SLois Curfman McInnes static int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
3998965ea79SLois Curfman McInnes {
40039ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4018965ea79SLois Curfman McInnes   int          ierr;
402c456f294SBarry Smith 
40343a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
40443a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
40544cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr);
4068965ea79SLois Curfman McInnes   return 0;
4078965ea79SLois Curfman McInnes }
4088965ea79SLois Curfman McInnes 
4095615d1e5SSatish Balay #undef __FUNC__
4105615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense"
411096963f5SLois Curfman McInnes static int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy)
412096963f5SLois Curfman McInnes {
413096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
414096963f5SLois Curfman McInnes   int          ierr;
4153501a2bdSLois Curfman McInnes   Scalar       zero = 0.0;
416096963f5SLois Curfman McInnes 
4173501a2bdSLois Curfman McInnes   ierr = VecSet(&zero,yy); CHKERRQ(ierr);
41844cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
419537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
420537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
421096963f5SLois Curfman McInnes   return 0;
422096963f5SLois Curfman McInnes }
423096963f5SLois Curfman McInnes 
4245615d1e5SSatish Balay #undef __FUNC__
4255615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense"
426096963f5SLois Curfman McInnes static int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
427096963f5SLois Curfman McInnes {
428096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
429096963f5SLois Curfman McInnes   int          ierr;
430096963f5SLois Curfman McInnes 
4313501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz); CHKERRQ(ierr);
43244cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
433537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
434537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
435096963f5SLois Curfman McInnes   return 0;
436096963f5SLois Curfman McInnes }
437096963f5SLois Curfman McInnes 
4385615d1e5SSatish Balay #undef __FUNC__
4395615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense"
44039ddd567SLois Curfman McInnes static int MatGetDiagonal_MPIDense(Mat A,Vec v)
4418965ea79SLois Curfman McInnes {
44239ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
443096963f5SLois Curfman McInnes   Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data;
44444cd7ae7SLois Curfman McInnes   int          ierr, len, i, n, m = a->m, radd;
44544cd7ae7SLois Curfman McInnes   Scalar       *x, zero = 0.0;
446ed3cc1f0SBarry Smith 
44744cd7ae7SLois Curfman McInnes   VecSet(&zero,v);
448096963f5SLois Curfman McInnes   ierr = VecGetArray(v,&x); CHKERRQ(ierr);
449096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n); CHKERRQ(ierr);
450e3372554SBarry Smith   if (n != a->M) SETERRQ(1,0,"Nonconforming mat and vec");
45144cd7ae7SLois Curfman McInnes   len = PetscMin(aloc->m,aloc->n);
4527ddc982cSLois Curfman McInnes   radd = a->rstart*m;
45344cd7ae7SLois Curfman McInnes   for ( i=0; i<len; i++ ) {
454096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
455096963f5SLois Curfman McInnes   }
456096963f5SLois Curfman McInnes   return 0;
4578965ea79SLois Curfman McInnes }
4588965ea79SLois Curfman McInnes 
4595615d1e5SSatish Balay #undef __FUNC__
4605615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense"
46139ddd567SLois Curfman McInnes static int MatDestroy_MPIDense(PetscObject obj)
4628965ea79SLois Curfman McInnes {
4638965ea79SLois Curfman McInnes   Mat          mat = (Mat) obj;
4643501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4658965ea79SLois Curfman McInnes   int          ierr;
466ed3cc1f0SBarry Smith 
4678965ea79SLois Curfman McInnes #if defined(PETSC_LOG)
4683501a2bdSLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",mdn->M,mdn->N);
4698965ea79SLois Curfman McInnes #endif
4700452661fSBarry Smith   PetscFree(mdn->rowners);
4713501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A); CHKERRQ(ierr);
4723501a2bdSLois Curfman McInnes   if (mdn->lvec)   VecDestroy(mdn->lvec);
4733501a2bdSLois Curfman McInnes   if (mdn->Mvctx)  VecScatterDestroy(mdn->Mvctx);
474622d7880SLois Curfman McInnes   if (mdn->factor) {
475622d7880SLois Curfman McInnes     if (mdn->factor->temp)   PetscFree(mdn->factor->temp);
476622d7880SLois Curfman McInnes     if (mdn->factor->tag)    PetscFree(mdn->factor->tag);
477622d7880SLois Curfman McInnes     if (mdn->factor->pivots) PetscFree(mdn->factor->pivots);
478622d7880SLois Curfman McInnes     PetscFree(mdn->factor);
479622d7880SLois Curfman McInnes   }
4800452661fSBarry Smith   PetscFree(mdn);
48190f02eecSBarry Smith   if (mat->mapping) {
48290f02eecSBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
48390f02eecSBarry Smith   }
4848965ea79SLois Curfman McInnes   PLogObjectDestroy(mat);
4850452661fSBarry Smith   PetscHeaderDestroy(mat);
4868965ea79SLois Curfman McInnes   return 0;
4878965ea79SLois Curfman McInnes }
48839ddd567SLois Curfman McInnes 
4898965ea79SLois Curfman McInnes #include "pinclude/pviewer.h"
4908965ea79SLois Curfman McInnes 
4915615d1e5SSatish Balay #undef __FUNC__
4925615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary"
49339ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer)
4948965ea79SLois Curfman McInnes {
49539ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4968965ea79SLois Curfman McInnes   int          ierr;
4977056b6fcSBarry Smith 
49839ddd567SLois Curfman McInnes   if (mdn->size == 1) {
49939ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5008965ea79SLois Curfman McInnes   }
501e3372554SBarry Smith   else SETERRQ(1,0,"Only uniprocessor output supported");
5028965ea79SLois Curfman McInnes   return 0;
5038965ea79SLois Curfman McInnes }
5048965ea79SLois Curfman McInnes 
5055615d1e5SSatish Balay #undef __FUNC__
5065615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII"
50739ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer)
5088965ea79SLois Curfman McInnes {
50939ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
51039ddd567SLois Curfman McInnes   int          ierr, format;
5118965ea79SLois Curfman McInnes   FILE         *fd;
51219bcc07fSBarry Smith   ViewerType   vtype;
5138965ea79SLois Curfman McInnes 
51419bcc07fSBarry Smith   ViewerGetType(viewer,&vtype);
51590ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
51690ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
517639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
5184e220ebcSLois Curfman McInnes     int rank;
5194e220ebcSLois Curfman McInnes     MatInfo info;
520096963f5SLois Curfman McInnes     MPI_Comm_rank(mat->comm,&rank);
5214e220ebcSLois Curfman McInnes     ierr = MatGetInfo(mat,MAT_LOCAL,&info);
52277c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
5234e220ebcSLois Curfman McInnes       fprintf(fd,"  [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m,
5244e220ebcSLois Curfman McInnes          (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
525096963f5SLois Curfman McInnes       fflush(fd);
52677c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5273501a2bdSLois Curfman McInnes     ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr);
5283501a2bdSLois Curfman McInnes     return 0;
5293501a2bdSLois Curfman McInnes   }
53002cad45dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_INFO) {
531096963f5SLois Curfman McInnes     return 0;
5328965ea79SLois Curfman McInnes   }
53319bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
53477c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
53539ddd567SLois Curfman McInnes     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n",
53639ddd567SLois Curfman McInnes              mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n);
53739ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5388965ea79SLois Curfman McInnes     fflush(fd);
53977c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5408965ea79SLois Curfman McInnes   }
5418965ea79SLois Curfman McInnes   else {
54239ddd567SLois Curfman McInnes     int size = mdn->size, rank = mdn->rank;
5438965ea79SLois Curfman McInnes     if (size == 1) {
54439ddd567SLois Curfman McInnes       ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5458965ea79SLois Curfman McInnes     }
5468965ea79SLois Curfman McInnes     else {
5478965ea79SLois Curfman McInnes       /* assemble the entire matrix onto first processor. */
5488965ea79SLois Curfman McInnes       Mat          A;
54939ddd567SLois Curfman McInnes       int          M = mdn->M, N = mdn->N,m,row,i, nz, *cols;
55039ddd567SLois Curfman McInnes       Scalar       *vals;
55139ddd567SLois Curfman McInnes       Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data;
5528965ea79SLois Curfman McInnes 
5538965ea79SLois Curfman McInnes       if (!rank) {
5540513a670SBarry Smith         ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5558965ea79SLois Curfman McInnes       }
5568965ea79SLois Curfman McInnes       else {
5570513a670SBarry Smith         ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5588965ea79SLois Curfman McInnes       }
5598965ea79SLois Curfman McInnes       PLogObjectParent(mat,A);
5608965ea79SLois Curfman McInnes 
56139ddd567SLois Curfman McInnes       /* Copy the matrix ... This isn't the most efficient means,
56239ddd567SLois Curfman McInnes          but it's quick for now */
56339ddd567SLois Curfman McInnes       row = mdn->rstart; m = Amdn->m;
5648965ea79SLois Curfman McInnes       for ( i=0; i<m; i++ ) {
56539ddd567SLois Curfman McInnes         ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
56639ddd567SLois Curfman McInnes         ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr);
56739ddd567SLois Curfman McInnes         ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
56839ddd567SLois Curfman McInnes         row++;
5698965ea79SLois Curfman McInnes       }
5708965ea79SLois Curfman McInnes 
5716d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5726d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5738965ea79SLois Curfman McInnes       if (!rank) {
57439ddd567SLois Curfman McInnes         ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr);
5758965ea79SLois Curfman McInnes       }
5768965ea79SLois Curfman McInnes       ierr = MatDestroy(A); CHKERRQ(ierr);
5778965ea79SLois Curfman McInnes     }
5788965ea79SLois Curfman McInnes   }
5798965ea79SLois Curfman McInnes   return 0;
5808965ea79SLois Curfman McInnes }
5818965ea79SLois Curfman McInnes 
5825615d1e5SSatish Balay #undef __FUNC__
5835615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense"
58439ddd567SLois Curfman McInnes static int MatView_MPIDense(PetscObject obj,Viewer viewer)
5858965ea79SLois Curfman McInnes {
5868965ea79SLois Curfman McInnes   Mat          mat = (Mat) obj;
58739ddd567SLois Curfman McInnes   int          ierr;
588bcd2baecSBarry Smith   ViewerType   vtype;
5898965ea79SLois Curfman McInnes 
590bcd2baecSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
591bcd2baecSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
59239ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
5938965ea79SLois Curfman McInnes   }
594bcd2baecSBarry Smith   else if (vtype == ASCII_FILES_VIEWER) {
59539ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
5968965ea79SLois Curfman McInnes   }
597bcd2baecSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
59839ddd567SLois Curfman McInnes     return MatView_MPIDense_Binary(mat,viewer);
5998965ea79SLois Curfman McInnes   }
6008965ea79SLois Curfman McInnes   return 0;
6018965ea79SLois Curfman McInnes }
6028965ea79SLois Curfman McInnes 
6035615d1e5SSatish Balay #undef __FUNC__
6045615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense"
6054e220ebcSLois Curfman McInnes static int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6068965ea79SLois Curfman McInnes {
6073501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6083501a2bdSLois Curfman McInnes   Mat          mdn = mat->A;
6094e220ebcSLois Curfman McInnes   int          ierr;
6104e220ebcSLois Curfman McInnes   double       isend[5], irecv[5];
6118965ea79SLois Curfman McInnes 
6124e220ebcSLois Curfman McInnes   info->rows_global    = (double)mat->M;
6134e220ebcSLois Curfman McInnes   info->columns_global = (double)mat->N;
6144e220ebcSLois Curfman McInnes   info->rows_local     = (double)mat->m;
6154e220ebcSLois Curfman McInnes   info->columns_local  = (double)mat->N;
6164e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
6174e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr);
6184e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6194e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6208965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6214e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
6224e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
6234e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
6244e220ebcSLois Curfman McInnes     info->memory       = isend[3];
6254e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
6268965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
627dd2c0978SLois Curfman McInnes     MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,A->comm);
6284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6338965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
634dd2c0978SLois Curfman McInnes     MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,A->comm);
6354e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6364e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6374e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6384e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6394e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6408965ea79SLois Curfman McInnes   }
6414e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
6424e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
6434e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
6448965ea79SLois Curfman McInnes   return 0;
6458965ea79SLois Curfman McInnes }
6468965ea79SLois Curfman McInnes 
6478c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*);
6488aaee692SLois Curfman McInnes    extern int MatLUFactorNumeric_MPIDense(Mat,Mat*);
6498aaee692SLois Curfman McInnes    extern int MatLUFactor_MPIDense(Mat,IS,IS,double);
6508aaee692SLois Curfman McInnes    extern int MatSolve_MPIDense(Mat,Vec,Vec);
6518c469469SLois Curfman McInnes    extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec);
6528aaee692SLois Curfman McInnes    extern int MatSolveTrans_MPIDense(Mat,Vec,Vec);
6538aaee692SLois Curfman McInnes    extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */
6548aaee692SLois Curfman McInnes 
6555615d1e5SSatish Balay #undef __FUNC__
6565615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense"
65739ddd567SLois Curfman McInnes static int MatSetOption_MPIDense(Mat A,MatOption op)
6588965ea79SLois Curfman McInnes {
65939ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
6608965ea79SLois Curfman McInnes 
6616d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
6626d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
663*c2653b3dSLois Curfman McInnes       op == MAT_NEW_NONZERO_LOCATION_ERROR ||
664219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
665219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED) {
666b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
667b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
668aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
6698965ea79SLois Curfman McInnes         MatSetOption(a->A,op);
670b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
671219d9a1aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
6726d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
6736d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
6746d4a8577SBarry Smith              op == MAT_YES_NEW_DIAGONALS)
67594a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_MPIDense:Option ignored\n");
6766d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)
67739b7565bSBarry Smith     {a->roworiented = 0; MatSetOption(a->A,op);}
6786d4a8577SBarry Smith   else if (op == MAT_NO_NEW_DIAGONALS)
679e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");}
6808965ea79SLois Curfman McInnes   else
681e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"unknown option");}
6828965ea79SLois Curfman McInnes   return 0;
6838965ea79SLois Curfman McInnes }
6848965ea79SLois Curfman McInnes 
6855615d1e5SSatish Balay #undef __FUNC__
6865615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense"
6873501a2bdSLois Curfman McInnes static int MatGetSize_MPIDense(Mat A,int *m,int *n)
6888965ea79SLois Curfman McInnes {
6893501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6908965ea79SLois Curfman McInnes   *m = mat->M; *n = mat->N;
6918965ea79SLois Curfman McInnes   return 0;
6928965ea79SLois Curfman McInnes }
6938965ea79SLois Curfman McInnes 
6945615d1e5SSatish Balay #undef __FUNC__
6955615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense"
6963501a2bdSLois Curfman McInnes static int MatGetLocalSize_MPIDense(Mat A,int *m,int *n)
6978965ea79SLois Curfman McInnes {
6983501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6998965ea79SLois Curfman McInnes   *m = mat->m; *n = mat->N;
7008965ea79SLois Curfman McInnes   return 0;
7018965ea79SLois Curfman McInnes }
7028965ea79SLois Curfman McInnes 
7035615d1e5SSatish Balay #undef __FUNC__
7045615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense"
7053501a2bdSLois Curfman McInnes static int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n)
7068965ea79SLois Curfman McInnes {
7073501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7088965ea79SLois Curfman McInnes   *m = mat->rstart; *n = mat->rend;
7098965ea79SLois Curfman McInnes   return 0;
7108965ea79SLois Curfman McInnes }
7118965ea79SLois Curfman McInnes 
7125615d1e5SSatish Balay #undef __FUNC__
7135615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense"
7143501a2bdSLois Curfman McInnes static int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v)
7158965ea79SLois Curfman McInnes {
7163501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
71739ddd567SLois Curfman McInnes   int          lrow, rstart = mat->rstart, rend = mat->rend;
7188965ea79SLois Curfman McInnes 
719e3372554SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,0,"only local rows")
7208965ea79SLois Curfman McInnes   lrow = row - rstart;
72139ddd567SLois Curfman McInnes   return MatGetRow(mat->A,lrow,nz,idx,v);
7228965ea79SLois Curfman McInnes }
7238965ea79SLois Curfman McInnes 
7245615d1e5SSatish Balay #undef __FUNC__
7255615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense"
72639ddd567SLois Curfman McInnes static int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v)
7278965ea79SLois Curfman McInnes {
7280452661fSBarry Smith   if (idx) PetscFree(*idx);
7290452661fSBarry Smith   if (v) PetscFree(*v);
7308965ea79SLois Curfman McInnes   return 0;
7318965ea79SLois Curfman McInnes }
7328965ea79SLois Curfman McInnes 
7335615d1e5SSatish Balay #undef __FUNC__
7345615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense"
735cddf8d76SBarry Smith static int MatNorm_MPIDense(Mat A,NormType type,double *norm)
736096963f5SLois Curfman McInnes {
7373501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
7383501a2bdSLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
7393501a2bdSLois Curfman McInnes   int          ierr, i, j;
7403501a2bdSLois Curfman McInnes   double       sum = 0.0;
7413501a2bdSLois Curfman McInnes   Scalar       *v = mat->v;
7423501a2bdSLois Curfman McInnes 
7433501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
7443501a2bdSLois Curfman McInnes     ierr =  MatNorm(mdn->A,type,norm); CHKERRQ(ierr);
7453501a2bdSLois Curfman McInnes   } else {
7463501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
7473501a2bdSLois Curfman McInnes       for (i=0; i<mat->n*mat->m; i++ ) {
7483501a2bdSLois Curfman McInnes #if defined(PETSC_COMPLEX)
7493501a2bdSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
7503501a2bdSLois Curfman McInnes #else
7513501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
7523501a2bdSLois Curfman McInnes #endif
7533501a2bdSLois Curfman McInnes       }
7546d84be18SBarry Smith       MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);
7553501a2bdSLois Curfman McInnes       *norm = sqrt(*norm);
7563501a2bdSLois Curfman McInnes       PLogFlops(2*mat->n*mat->m);
7573501a2bdSLois Curfman McInnes     }
7583501a2bdSLois Curfman McInnes     else if (type == NORM_1) {
7593501a2bdSLois Curfman McInnes       double *tmp, *tmp2;
7600452661fSBarry Smith       tmp  = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp);
7613501a2bdSLois Curfman McInnes       tmp2 = tmp + mdn->N;
762cddf8d76SBarry Smith       PetscMemzero(tmp,2*mdn->N*sizeof(double));
763096963f5SLois Curfman McInnes       *norm = 0.0;
7643501a2bdSLois Curfman McInnes       v = mat->v;
7653501a2bdSLois Curfman McInnes       for ( j=0; j<mat->n; j++ ) {
7663501a2bdSLois Curfman McInnes         for ( i=0; i<mat->m; i++ ) {
76767e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
7683501a2bdSLois Curfman McInnes         }
7693501a2bdSLois Curfman McInnes       }
7706d84be18SBarry Smith       MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);
7713501a2bdSLois Curfman McInnes       for ( j=0; j<mdn->N; j++ ) {
7723501a2bdSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
7733501a2bdSLois Curfman McInnes       }
7740452661fSBarry Smith       PetscFree(tmp);
7753501a2bdSLois Curfman McInnes       PLogFlops(mat->n*mat->m);
7763501a2bdSLois Curfman McInnes     }
7773501a2bdSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
7783501a2bdSLois Curfman McInnes       double ntemp;
7793501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr);
7806d84be18SBarry Smith       MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);
7813501a2bdSLois Curfman McInnes     }
7823501a2bdSLois Curfman McInnes     else {
783e3372554SBarry Smith       SETERRQ(1,0,"No support for two norm");
7843501a2bdSLois Curfman McInnes     }
7853501a2bdSLois Curfman McInnes   }
7863501a2bdSLois Curfman McInnes   return 0;
7873501a2bdSLois Curfman McInnes }
7883501a2bdSLois Curfman McInnes 
7895615d1e5SSatish Balay #undef __FUNC__
7905615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense"
7913501a2bdSLois Curfman McInnes static int MatTranspose_MPIDense(Mat A,Mat *matout)
7923501a2bdSLois Curfman McInnes {
7933501a2bdSLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
7943501a2bdSLois Curfman McInnes   Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data;
7953501a2bdSLois Curfman McInnes   Mat          B;
7963501a2bdSLois Curfman McInnes   int          M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart;
7973501a2bdSLois Curfman McInnes   int          j, i, ierr;
7983501a2bdSLois Curfman McInnes   Scalar       *v;
7993501a2bdSLois Curfman McInnes 
8007056b6fcSBarry Smith   if (matout == PETSC_NULL && M != N) {
801e3372554SBarry Smith     SETERRQ(1,0,"Supports square matrix only in-place");
8027056b6fcSBarry Smith   }
8037056b6fcSBarry Smith   ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr);
8043501a2bdSLois Curfman McInnes 
8053501a2bdSLois Curfman McInnes   m = Aloc->m; n = Aloc->n; v = Aloc->v;
8060452661fSBarry Smith   rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork);
8073501a2bdSLois Curfman McInnes   for ( j=0; j<n; j++ ) {
8083501a2bdSLois Curfman McInnes     for (i=0; i<m; i++) rwork[i] = rstart + i;
8093501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr);
8103501a2bdSLois Curfman McInnes     v   += m;
8113501a2bdSLois Curfman McInnes   }
8120452661fSBarry Smith   PetscFree(rwork);
8136d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8146d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8153638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
8163501a2bdSLois Curfman McInnes     *matout = B;
8173501a2bdSLois Curfman McInnes   } else {
8183501a2bdSLois Curfman McInnes     /* This isn't really an in-place transpose, but free data struct from a */
8190452661fSBarry Smith     PetscFree(a->rowners);
8203501a2bdSLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
8213501a2bdSLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
8223501a2bdSLois Curfman McInnes     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
8230452661fSBarry Smith     PetscFree(a);
8243501a2bdSLois Curfman McInnes     PetscMemcpy(A,B,sizeof(struct _Mat));
8250452661fSBarry Smith     PetscHeaderDestroy(B);
8263501a2bdSLois Curfman McInnes   }
827096963f5SLois Curfman McInnes   return 0;
828096963f5SLois Curfman McInnes }
829096963f5SLois Curfman McInnes 
83044cd7ae7SLois Curfman McInnes #include "pinclude/plapack.h"
8315615d1e5SSatish Balay #undef __FUNC__
8325615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense"
83344cd7ae7SLois Curfman McInnes static int MatScale_MPIDense(Scalar *alpha,Mat inA)
83444cd7ae7SLois Curfman McInnes {
83544cd7ae7SLois Curfman McInnes   Mat_MPIDense *A = (Mat_MPIDense *) inA->data;
83644cd7ae7SLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense *) A->A->data;
83744cd7ae7SLois Curfman McInnes   int          one = 1, nz;
83844cd7ae7SLois Curfman McInnes 
83944cd7ae7SLois Curfman McInnes   nz = a->m*a->n;
84044cd7ae7SLois Curfman McInnes   BLscal_( &nz, alpha, a->v, &one );
84144cd7ae7SLois Curfman McInnes   PLogFlops(nz);
84244cd7ae7SLois Curfman McInnes   return 0;
84344cd7ae7SLois Curfman McInnes }
84444cd7ae7SLois Curfman McInnes 
8453d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat,Mat *,int);
8468965ea79SLois Curfman McInnes 
8478965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
84839ddd567SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIDense,
84939ddd567SLois Curfman McInnes        MatGetRow_MPIDense,MatRestoreRow_MPIDense,
85039ddd567SLois Curfman McInnes        MatMult_MPIDense,MatMultAdd_MPIDense,
851096963f5SLois Curfman McInnes        MatMultTrans_MPIDense,MatMultTransAdd_MPIDense,
852e7ca0642SLois Curfman McInnes /*       MatSolve_MPIDense,0, */
853e7ca0642SLois Curfman McInnes        0,0,
85439ddd567SLois Curfman McInnes        0,0,
8558c469469SLois Curfman McInnes        0,0,
8568c469469SLois Curfman McInnes /*       MatLUFactor_MPIDense,0, */
8578aaee692SLois Curfman McInnes        0,MatTranspose_MPIDense,
85839ddd567SLois Curfman McInnes        MatGetInfo_MPIDense,0,
859096963f5SLois Curfman McInnes        MatGetDiagonal_MPIDense,0,MatNorm_MPIDense,
86039ddd567SLois Curfman McInnes        MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense,
8618965ea79SLois Curfman McInnes        0,
86239ddd567SLois Curfman McInnes        MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense,
8633b2fbd54SBarry Smith        0,0,
8648c469469SLois Curfman McInnes /*       0,MatLUFactorSymbolic_MPIDense,MatLUFactorNumeric_MPIDense, */
8658aaee692SLois Curfman McInnes        0,0,
86639ddd567SLois Curfman McInnes        MatGetSize_MPIDense,MatGetLocalSize_MPIDense,
86739ddd567SLois Curfman McInnes        MatGetOwnershipRange_MPIDense,
868ff14e315SSatish Balay        0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense,
86994a9d846SBarry Smith        MatConvertSameType_MPIDense,
870b49de8d1SLois Curfman McInnes        0,0,0,0,0,
8714e220ebcSLois Curfman McInnes        0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense,
8724e220ebcSLois Curfman McInnes        0,0,0,MatGetBlockSize_MPIDense};
8738965ea79SLois Curfman McInnes 
8745615d1e5SSatish Balay #undef __FUNC__
8755615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense"
8768965ea79SLois Curfman McInnes /*@C
87739ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
8788965ea79SLois Curfman McInnes 
8798965ea79SLois Curfman McInnes    Input Parameters:
8808965ea79SLois Curfman McInnes .  comm - MPI communicator
8818965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
8828965ea79SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
8838965ea79SLois Curfman McInnes            if N is given)
8848965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
8858965ea79SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
8868965ea79SLois Curfman McInnes            if n is given)
887b4fd4287SBarry Smith .  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
888dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
8898965ea79SLois Curfman McInnes 
8908965ea79SLois Curfman McInnes    Output Parameter:
891477f1c0bSLois Curfman McInnes .  A - the matrix
8928965ea79SLois Curfman McInnes 
8938965ea79SLois Curfman McInnes    Notes:
89439ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
89539ddd567SLois Curfman McInnes    storage by columns.
8968965ea79SLois Curfman McInnes 
89718f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
89818f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
899b4fd4287SBarry Smith    set data=PETSC_NULL.
90018f449edSLois Curfman McInnes 
9018965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
9028965ea79SLois Curfman McInnes    (possibly both).
9038965ea79SLois Curfman McInnes 
9043501a2bdSLois Curfman McInnes    Currently, the only parallel dense matrix decomposition is by rows,
9053501a2bdSLois Curfman McInnes    so that n=N and each submatrix owns all of the global columns.
9063501a2bdSLois Curfman McInnes 
90739ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel
9088965ea79SLois Curfman McInnes 
90939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
9108965ea79SLois Curfman McInnes @*/
911477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A)
9128965ea79SLois Curfman McInnes {
9138965ea79SLois Curfman McInnes   Mat          mat;
91439ddd567SLois Curfman McInnes   Mat_MPIDense *a;
91525cdf11fSBarry Smith   int          ierr, i,flg;
9168965ea79SLois Curfman McInnes 
917ed2daf61SLois Curfman McInnes   /* Note:  For now, when data is specified above, this assumes the user correctly
918ed2daf61SLois Curfman McInnes    allocates the local dense storage space.  We should add error checking. */
91918f449edSLois Curfman McInnes 
920477f1c0bSLois Curfman McInnes   *A = 0;
9210452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,comm);
9228965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
9230452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
9248965ea79SLois Curfman McInnes   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
92539ddd567SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIDense;
92639ddd567SLois Curfman McInnes   mat->view       = MatView_MPIDense;
9278965ea79SLois Curfman McInnes   mat->factor     = 0;
92890f02eecSBarry Smith   mat->mapping    = 0;
9298965ea79SLois Curfman McInnes 
930622d7880SLois Curfman McInnes   a->factor       = 0;
931e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
9328965ea79SLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
9338965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
9348965ea79SLois Curfman McInnes 
93539ddd567SLois Curfman McInnes   if (M == PETSC_DECIDE) MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm);
9368965ea79SLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
93739ddd567SLois Curfman McInnes 
93839ddd567SLois Curfman McInnes   /* each row stores all columns */
93939ddd567SLois Curfman McInnes   if (N == PETSC_DECIDE) N = n;
940d7e8b826SBarry Smith   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
941e3372554SBarry Smith   /*  if (n != N) SETERRQ(1,0,"For now, only n=N is supported"); */
942aca0ad90SLois Curfman McInnes   a->N = mat->N = N;
943aca0ad90SLois Curfman McInnes   a->M = mat->M = M;
944aca0ad90SLois Curfman McInnes   a->m = mat->m = m;
945aca0ad90SLois Curfman McInnes   a->n = mat->n = n;
9468965ea79SLois Curfman McInnes 
9478965ea79SLois Curfman McInnes   /* build local table of row and column ownerships */
948d7e8b826SBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
949d7e8b826SBarry Smith   a->cowners = a->rowners + a->size + 1;
9507056b6fcSBarry Smith   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense));
9518965ea79SLois Curfman McInnes   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
9528965ea79SLois Curfman McInnes   a->rowners[0] = 0;
9538965ea79SLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
9548965ea79SLois Curfman McInnes     a->rowners[i] += a->rowners[i-1];
9558965ea79SLois Curfman McInnes   }
9568965ea79SLois Curfman McInnes   a->rstart = a->rowners[a->rank];
9578965ea79SLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
958d7e8b826SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
959d7e8b826SBarry Smith   a->cowners[0] = 0;
960d7e8b826SBarry Smith   for ( i=2; i<=a->size; i++ ) {
961d7e8b826SBarry Smith     a->cowners[i] += a->cowners[i-1];
962d7e8b826SBarry Smith   }
9638965ea79SLois Curfman McInnes 
96418f449edSLois Curfman McInnes   ierr = MatCreateSeqDense(MPI_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr);
9658965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
9668965ea79SLois Curfman McInnes 
9678965ea79SLois Curfman McInnes   /* build cache for off array entries formed */
9688965ea79SLois Curfman McInnes   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
9698965ea79SLois Curfman McInnes 
9708965ea79SLois Curfman McInnes   /* stuff used for matrix vector multiply */
9718965ea79SLois Curfman McInnes   a->lvec        = 0;
9728965ea79SLois Curfman McInnes   a->Mvctx       = 0;
97339b7565bSBarry Smith   a->roworiented = 1;
9748965ea79SLois Curfman McInnes 
975477f1c0bSLois Curfman McInnes   *A = mat;
97625cdf11fSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
97725cdf11fSBarry Smith   if (flg) {
9788c469469SLois Curfman McInnes     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
9798c469469SLois Curfman McInnes   }
9808965ea79SLois Curfman McInnes   return 0;
9818965ea79SLois Curfman McInnes }
9828965ea79SLois Curfman McInnes 
9835615d1e5SSatish Balay #undef __FUNC__
9845615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIDense"
9853d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues)
9868965ea79SLois Curfman McInnes {
9878965ea79SLois Curfman McInnes   Mat          mat;
9883501a2bdSLois Curfman McInnes   Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data;
98939ddd567SLois Curfman McInnes   int          ierr;
9902ba99913SLois Curfman McInnes   FactorCtx    *factor;
9918965ea79SLois Curfman McInnes 
9928965ea79SLois Curfman McInnes   *newmat       = 0;
9930452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,A->comm);
9948965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
9950452661fSBarry Smith   mat->data      = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
9968965ea79SLois Curfman McInnes   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
99739ddd567SLois Curfman McInnes   mat->destroy   = MatDestroy_MPIDense;
99839ddd567SLois Curfman McInnes   mat->view      = MatView_MPIDense;
9993501a2bdSLois Curfman McInnes   mat->factor    = A->factor;
1000c456f294SBarry Smith   mat->assembled = PETSC_TRUE;
10018965ea79SLois Curfman McInnes 
100244cd7ae7SLois Curfman McInnes   a->m = mat->m = oldmat->m;
100344cd7ae7SLois Curfman McInnes   a->n = mat->n = oldmat->n;
100444cd7ae7SLois Curfman McInnes   a->M = mat->M = oldmat->M;
100544cd7ae7SLois Curfman McInnes   a->N = mat->N = oldmat->N;
10062ba99913SLois Curfman McInnes   if (oldmat->factor) {
10072ba99913SLois Curfman McInnes     a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor);
10082ba99913SLois Curfman McInnes     /* copy factor contents ... add this code! */
10092ba99913SLois Curfman McInnes   } else a->factor = 0;
10108965ea79SLois Curfman McInnes 
10118965ea79SLois Curfman McInnes   a->rstart       = oldmat->rstart;
10128965ea79SLois Curfman McInnes   a->rend         = oldmat->rend;
10138965ea79SLois Curfman McInnes   a->size         = oldmat->size;
10148965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1015e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
10168965ea79SLois Curfman McInnes 
10170452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
101839ddd567SLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense));
10198965ea79SLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
10208965ea79SLois Curfman McInnes   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
10218965ea79SLois Curfman McInnes 
10228965ea79SLois Curfman McInnes   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
10238965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->lvec);
102455659b69SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
10258965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->Mvctx);
10268965ea79SLois Curfman McInnes   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
10278965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
10288965ea79SLois Curfman McInnes   *newmat = mat;
10298965ea79SLois Curfman McInnes   return 0;
10308965ea79SLois Curfman McInnes }
10318965ea79SLois Curfman McInnes 
103277c4ece6SBarry Smith #include "sys.h"
10338965ea79SLois Curfman McInnes 
10345615d1e5SSatish Balay #undef __FUNC__
10355615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile"
103690ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat)
103790ace30eSBarry Smith {
103890ace30eSBarry Smith   int        *rowners, i,size,rank,m,rstart,rend,ierr,nz,j;
103990ace30eSBarry Smith   Scalar     *array,*vals,*vals_ptr;
104090ace30eSBarry Smith   MPI_Status status;
104190ace30eSBarry Smith 
104290ace30eSBarry Smith   MPI_Comm_rank(comm,&rank);
104390ace30eSBarry Smith   MPI_Comm_size(comm,&size);
104490ace30eSBarry Smith 
104590ace30eSBarry Smith   /* determine ownership of all rows */
104690ace30eSBarry Smith   m = M/size + ((M % size) > rank);
104790ace30eSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
104890ace30eSBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
104990ace30eSBarry Smith   rowners[0] = 0;
105090ace30eSBarry Smith   for ( i=2; i<=size; i++ ) {
105190ace30eSBarry Smith     rowners[i] += rowners[i-1];
105290ace30eSBarry Smith   }
105390ace30eSBarry Smith   rstart = rowners[rank];
105490ace30eSBarry Smith   rend   = rowners[rank+1];
105590ace30eSBarry Smith 
105690ace30eSBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
105790ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr);
105890ace30eSBarry Smith 
105990ace30eSBarry Smith   if (!rank) {
106090ace30eSBarry Smith     vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
106190ace30eSBarry Smith 
106290ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
106377c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,BINARY_SCALAR); CHKERRQ(ierr);
106490ace30eSBarry Smith 
106590ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
106690ace30eSBarry Smith     vals_ptr = vals;
106790ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
106890ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
106990ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
107090ace30eSBarry Smith       }
107190ace30eSBarry Smith     }
107290ace30eSBarry Smith 
107390ace30eSBarry Smith     /* read in other processors and ship out */
107490ace30eSBarry Smith     for ( i=1; i<size; i++ ) {
107590ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
107677c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
107790ace30eSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);
107890ace30eSBarry Smith     }
107990ace30eSBarry Smith   }
108090ace30eSBarry Smith   else {
108190ace30eSBarry Smith     /* receive numeric values */
108290ace30eSBarry Smith     vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
108390ace30eSBarry Smith 
108490ace30eSBarry Smith     /* receive message of values*/
108590ace30eSBarry Smith     MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);
108690ace30eSBarry Smith 
108790ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
108890ace30eSBarry Smith     vals_ptr = vals;
108990ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
109090ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
109190ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
109290ace30eSBarry Smith       }
109390ace30eSBarry Smith     }
109490ace30eSBarry Smith   }
109590ace30eSBarry Smith   PetscFree(rowners);
109690ace30eSBarry Smith   PetscFree(vals);
10976d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
10986d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
109990ace30eSBarry Smith   return 0;
110090ace30eSBarry Smith }
110190ace30eSBarry Smith 
110290ace30eSBarry Smith 
11035615d1e5SSatish Balay #undef __FUNC__
11045615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense"
110519bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat)
11068965ea79SLois Curfman McInnes {
11078965ea79SLois Curfman McInnes   Mat          A;
11088965ea79SLois Curfman McInnes   int          i, nz, ierr, j,rstart, rend, fd;
11098965ea79SLois Curfman McInnes   Scalar       *vals,*svals;
111019bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
11118965ea79SLois Curfman McInnes   MPI_Status   status;
11128965ea79SLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
11138965ea79SLois Curfman McInnes   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
111419bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
11158965ea79SLois Curfman McInnes 
11168965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
11178965ea79SLois Curfman McInnes   if (!rank) {
111890ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
111977c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr);
1120e3372554SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object");
11218965ea79SLois Curfman McInnes   }
11228965ea79SLois Curfman McInnes 
11238965ea79SLois Curfman McInnes   MPI_Bcast(header+1,3,MPI_INT,0,comm);
112490ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
112590ace30eSBarry Smith 
112690ace30eSBarry Smith   /*
112790ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
112890ace30eSBarry Smith   */
112990ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
113090ace30eSBarry Smith     return MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);
113190ace30eSBarry Smith   }
113290ace30eSBarry Smith 
11338965ea79SLois Curfman McInnes   /* determine ownership of all rows */
11348965ea79SLois Curfman McInnes   m = M/size + ((M % size) > rank);
11350452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
11368965ea79SLois Curfman McInnes   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
11378965ea79SLois Curfman McInnes   rowners[0] = 0;
11388965ea79SLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
11398965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
11408965ea79SLois Curfman McInnes   }
11418965ea79SLois Curfman McInnes   rstart = rowners[rank];
11428965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
11438965ea79SLois Curfman McInnes 
11448965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
11450452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
11468965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
11478965ea79SLois Curfman McInnes   if (!rank) {
11480452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
114977c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
11500452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
11518965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
11528965ea79SLois Curfman McInnes     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
11530452661fSBarry Smith     PetscFree(sndcounts);
11548965ea79SLois Curfman McInnes   }
11558965ea79SLois Curfman McInnes   else {
11568965ea79SLois Curfman McInnes     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
11578965ea79SLois Curfman McInnes   }
11588965ea79SLois Curfman McInnes 
11598965ea79SLois Curfman McInnes   if (!rank) {
11608965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
11610452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1162cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
11638965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
11648965ea79SLois Curfman McInnes       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
11658965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
11668965ea79SLois Curfman McInnes       }
11678965ea79SLois Curfman McInnes     }
11680452661fSBarry Smith     PetscFree(rowlengths);
11698965ea79SLois Curfman McInnes 
11708965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
11718965ea79SLois Curfman McInnes     maxnz = 0;
11728965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
11730452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
11748965ea79SLois Curfman McInnes     }
11750452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
11768965ea79SLois Curfman McInnes 
11778965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
11788965ea79SLois Curfman McInnes     nz = procsnz[0];
11790452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
118077c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr);
11818965ea79SLois Curfman McInnes 
11828965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
11838965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
11848965ea79SLois Curfman McInnes       nz = procsnz[i];
118577c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr);
11868965ea79SLois Curfman McInnes       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
11878965ea79SLois Curfman McInnes     }
11880452661fSBarry Smith     PetscFree(cols);
11898965ea79SLois Curfman McInnes   }
11908965ea79SLois Curfman McInnes   else {
11918965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
11928965ea79SLois Curfman McInnes     nz = 0;
11938965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
11948965ea79SLois Curfman McInnes       nz += ourlens[i];
11958965ea79SLois Curfman McInnes     }
11960452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
11978965ea79SLois Curfman McInnes 
11988965ea79SLois Curfman McInnes     /* receive message of column indices*/
11998965ea79SLois Curfman McInnes     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
12008965ea79SLois Curfman McInnes     MPI_Get_count(&status,MPI_INT,&maxnz);
1201e3372554SBarry Smith     if (maxnz != nz) SETERRQ(1,0,"something is wrong with file");
12028965ea79SLois Curfman McInnes   }
12038965ea79SLois Curfman McInnes 
12048965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
1205cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
12068965ea79SLois Curfman McInnes   jj = 0;
12078965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12088965ea79SLois Curfman McInnes     for ( j=0; j<ourlens[i]; j++ ) {
12098965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
12108965ea79SLois Curfman McInnes       jj++;
12118965ea79SLois Curfman McInnes     }
12128965ea79SLois Curfman McInnes   }
12138965ea79SLois Curfman McInnes 
12148965ea79SLois Curfman McInnes   /* create our matrix */
12158965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12168965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
12178965ea79SLois Curfman McInnes   }
1218b4fd4287SBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
12198965ea79SLois Curfman McInnes   A = *newmat;
12208965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12218965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
12228965ea79SLois Curfman McInnes   }
12238965ea79SLois Curfman McInnes 
12248965ea79SLois Curfman McInnes   if (!rank) {
12250452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
12268965ea79SLois Curfman McInnes 
12278965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
12288965ea79SLois Curfman McInnes     nz = procsnz[0];
122977c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
12308965ea79SLois Curfman McInnes 
12318965ea79SLois Curfman McInnes     /* insert into matrix */
12328965ea79SLois Curfman McInnes     jj      = rstart;
12338965ea79SLois Curfman McInnes     smycols = mycols;
12348965ea79SLois Curfman McInnes     svals   = vals;
12358965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
12368965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
12378965ea79SLois Curfman McInnes       smycols += ourlens[i];
12388965ea79SLois Curfman McInnes       svals   += ourlens[i];
12398965ea79SLois Curfman McInnes       jj++;
12408965ea79SLois Curfman McInnes     }
12418965ea79SLois Curfman McInnes 
12428965ea79SLois Curfman McInnes     /* read in other processors and ship out */
12438965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
12448965ea79SLois Curfman McInnes       nz = procsnz[i];
124577c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
12468965ea79SLois Curfman McInnes       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
12478965ea79SLois Curfman McInnes     }
12480452661fSBarry Smith     PetscFree(procsnz);
12498965ea79SLois Curfman McInnes   }
12508965ea79SLois Curfman McInnes   else {
12518965ea79SLois Curfman McInnes     /* receive numeric values */
12520452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
12538965ea79SLois Curfman McInnes 
12548965ea79SLois Curfman McInnes     /* receive message of values*/
12558965ea79SLois Curfman McInnes     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
12568965ea79SLois Curfman McInnes     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
1257e3372554SBarry Smith     if (maxnz != nz) SETERRQ(1,0,"something is wrong with file");
12588965ea79SLois Curfman McInnes 
12598965ea79SLois Curfman McInnes     /* insert into matrix */
12608965ea79SLois Curfman McInnes     jj      = rstart;
12618965ea79SLois Curfman McInnes     smycols = mycols;
12628965ea79SLois Curfman McInnes     svals   = vals;
12638965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
12648965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
12658965ea79SLois Curfman McInnes       smycols += ourlens[i];
12668965ea79SLois Curfman McInnes       svals   += ourlens[i];
12678965ea79SLois Curfman McInnes       jj++;
12688965ea79SLois Curfman McInnes     }
12698965ea79SLois Curfman McInnes   }
12700452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
12718965ea79SLois Curfman McInnes 
12726d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
12736d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
12748965ea79SLois Curfman McInnes   return 0;
12758965ea79SLois Curfman McInnes }
127690ace30eSBarry Smith 
127790ace30eSBarry Smith 
127890ace30eSBarry Smith 
127990ace30eSBarry Smith 
128090ace30eSBarry Smith 
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