1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 52ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 56ba8c8a56SBarry Smith 57ba8c8a56SBarry Smith PetscFunctionBegin; 58aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 59ba8c8a56SBarry Smith lrow = row - rstart; 609566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 61ba8c8a56SBarry Smith PetscFunctionReturn(0); 62ba8c8a56SBarry Smith } 63ba8c8a56SBarry Smith 64637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 65ba8c8a56SBarry Smith { 66637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 67637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 68ba8c8a56SBarry Smith 69ba8c8a56SBarry Smith PetscFunctionBegin; 70aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 71637a0070SStefano Zampini lrow = row - rstart; 729566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 73ba8c8a56SBarry Smith PetscFunctionReturn(0); 74ba8c8a56SBarry Smith } 75ba8c8a56SBarry Smith 7611bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 79d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8087828ca2SBarry Smith PetscScalar *array; 810de54da6SSatish Balay MPI_Comm comm; 824b6ae80fSStefano Zampini PetscBool flg; 8311bd1e4dSLisandro Dalcin Mat B; 840de54da6SSatish Balay 850de54da6SSatish Balay PetscFunctionBegin; 869566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 8728b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 89616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 904b6ae80fSStefano Zampini 919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 9228b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 969566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 989566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1009566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 10111bd1e4dSLisandro Dalcin *a = B; 1029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1032205254eSKarl Rupp } else *a = B; 1040de54da6SSatish Balay PetscFunctionReturn(0); 1050de54da6SSatish Balay } 1060de54da6SSatish Balay 10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1088965ea79SLois Curfman McInnes { 10939b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 111ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1128965ea79SLois Curfman McInnes 1133a40ed3dSBarry Smith PetscFunctionBegin; 1148965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1155ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 11608401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1178965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1188965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11939b7565bSBarry Smith if (roworiented) { 1209566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1213a40ed3dSBarry Smith } else { 1228965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1235ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 12408401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1259566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 12639b7565bSBarry Smith } 1278965ea79SLois Curfman McInnes } 1282205254eSKarl Rupp } else if (!A->donotstash) { 1295080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13039b7565bSBarry Smith if (roworiented) { 1319566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 132d36fbae8SSatish Balay } else { 1339566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 13439b7565bSBarry Smith } 135b49de8d1SLois Curfman McInnes } 136b49de8d1SLois Curfman McInnes } 1373a40ed3dSBarry Smith PetscFunctionReturn(0); 138b49de8d1SLois Curfman McInnes } 139b49de8d1SLois Curfman McInnes 14013f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 141b49de8d1SLois Curfman McInnes { 142b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 143d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 144b49de8d1SLois Curfman McInnes 1453a40ed3dSBarry Smith PetscFunctionBegin; 146b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 14754c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 14854c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 149b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 150b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 151b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15254c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 15354c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1549566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 155b49de8d1SLois Curfman McInnes } 156e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1578965ea79SLois Curfman McInnes } 1583a40ed3dSBarry Smith PetscFunctionReturn(0); 1598965ea79SLois Curfman McInnes } 1608965ea79SLois Curfman McInnes 16149a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 16249a6ff4bSBarry Smith { 16349a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16449a6ff4bSBarry Smith 16549a6ff4bSBarry Smith PetscFunctionBegin; 1669566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 16749a6ff4bSBarry Smith PetscFunctionReturn(0); 16849a6ff4bSBarry Smith } 16949a6ff4bSBarry Smith 170ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 171ad16ce7aSStefano Zampini { 172ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17317359960SJose E. Roman PetscBool iscuda; 174ad16ce7aSStefano Zampini 175ad16ce7aSStefano Zampini PetscFunctionBegin; 17617359960SJose E. Roman if (!a->A) { 17728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1809566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1819566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 1829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1849566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 18517359960SJose E. Roman } 1869566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 187ad16ce7aSStefano Zampini PetscFunctionReturn(0); 188ad16ce7aSStefano Zampini } 189ad16ce7aSStefano Zampini 190637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 191ff14e315SSatish Balay { 192ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 193ff14e315SSatish Balay 1943a40ed3dSBarry Smith PetscFunctionBegin; 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 1973a40ed3dSBarry Smith PetscFunctionReturn(0); 198ff14e315SSatish Balay } 199ff14e315SSatish Balay 200637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2018572280aSBarry Smith { 2028572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2038572280aSBarry Smith 2048572280aSBarry Smith PetscFunctionBegin; 20528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2078572280aSBarry Smith PetscFunctionReturn(0); 2088572280aSBarry Smith } 2098572280aSBarry Smith 2106947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2116947451fSStefano Zampini { 2126947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2136947451fSStefano Zampini 2146947451fSStefano Zampini PetscFunctionBegin; 21528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2176947451fSStefano Zampini PetscFunctionReturn(0); 2186947451fSStefano Zampini } 2196947451fSStefano Zampini 220637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 221d3042a70SBarry Smith { 222d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 223d3042a70SBarry Smith 224d3042a70SBarry Smith PetscFunctionBegin; 22528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 228d3042a70SBarry Smith PetscFunctionReturn(0); 229d3042a70SBarry Smith } 230d3042a70SBarry Smith 231d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 232d3042a70SBarry Smith { 233d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 234d3042a70SBarry Smith 235d3042a70SBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 23728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2389566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 239d3042a70SBarry Smith PetscFunctionReturn(0); 240d3042a70SBarry Smith } 241d3042a70SBarry Smith 242d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 243d5ea218eSStefano Zampini { 244d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 245d5ea218eSStefano Zampini 246d5ea218eSStefano Zampini PetscFunctionBegin; 24728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2499566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 250d5ea218eSStefano Zampini PetscFunctionReturn(0); 251d5ea218eSStefano Zampini } 252d5ea218eSStefano Zampini 2537dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 254ca3fa75bSLois Curfman McInnes { 255ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 256637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2575d0c19d7SBarry Smith const PetscInt *irow,*icol; 258637a0070SStefano Zampini const PetscScalar *v; 259637a0070SStefano Zampini PetscScalar *bv; 260ca3fa75bSLois Curfman McInnes Mat newmat; 2614aa3045dSJed Brown IS iscol_local; 26242a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 263ca3fa75bSLois Curfman McInnes 264ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 26708401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 26842a884f0SBarry Smith 2699566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2749566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 275ca3fa75bSLois Curfman McInnes 276ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2777eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2787eba5e9cSLois Curfman McInnes original matrix! */ 279ca3fa75bSLois Curfman McInnes 2809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 282ca3fa75bSLois Curfman McInnes 283ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 284ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 285e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2867eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 287ca3fa75bSLois Curfman McInnes newmat = *B; 288ca3fa75bSLois Curfman McInnes } else { 289ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2909566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 2919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 2929566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 2939566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 294ca3fa75bSLois Curfman McInnes } 295ca3fa75bSLois Curfman McInnes 296ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 297ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 2989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 2999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3009566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3014aa3045dSJed Brown for (i=0; i<Ncols; i++) { 302637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 303ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3047eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 305ca3fa75bSLois Curfman McInnes } 306ca3fa75bSLois Curfman McInnes } 3079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 309ca3fa75bSLois Curfman McInnes 310ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Free work space */ 3159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 318ca3fa75bSLois Curfman McInnes *B = newmat; 319ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 320ca3fa75bSLois Curfman McInnes } 321ca3fa75bSLois Curfman McInnes 322637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 323ff14e315SSatish Balay { 32473a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 32573a71a0fSBarry Smith 3263a40ed3dSBarry Smith PetscFunctionBegin; 3279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3283a40ed3dSBarry Smith PetscFunctionReturn(0); 329ff14e315SSatish Balay } 330ff14e315SSatish Balay 331637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3328572280aSBarry Smith { 3338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3348572280aSBarry Smith 3358572280aSBarry Smith PetscFunctionBegin; 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3378572280aSBarry Smith PetscFunctionReturn(0); 3388572280aSBarry Smith } 3398572280aSBarry Smith 3406947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3416947451fSStefano Zampini { 3426947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3436947451fSStefano Zampini 3446947451fSStefano Zampini PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3466947451fSStefano Zampini PetscFunctionReturn(0); 3476947451fSStefano Zampini } 3486947451fSStefano Zampini 349dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3508965ea79SLois Curfman McInnes { 35139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 35213f74950SBarry Smith PetscInt nstash,reallocs; 3538965ea79SLois Curfman McInnes 3543a40ed3dSBarry Smith PetscFunctionBegin; 3554067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3568965ea79SLois Curfman McInnes 3579566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3589566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3599566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3603a40ed3dSBarry Smith PetscFunctionReturn(0); 3618965ea79SLois Curfman McInnes } 3628965ea79SLois Curfman McInnes 363dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3648965ea79SLois Curfman McInnes { 36539ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 36613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 36713f74950SBarry Smith PetscMPIInt n; 36887828ca2SBarry Smith PetscScalar *val; 3698965ea79SLois Curfman McInnes 3703a40ed3dSBarry Smith PetscFunctionBegin; 371910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3728965ea79SLois Curfman McInnes /* wait on receives */ 3737ef1d9bdSSatish Balay while (1) { 3749566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3757ef1d9bdSSatish Balay if (!flg) break; 3768965ea79SLois Curfman McInnes 3777ef1d9bdSSatish Balay for (i=0; i<n;) { 3787ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3792205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3802205254eSKarl Rupp if (row[j] != rstart) break; 3812205254eSKarl Rupp } 3827ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3837ef1d9bdSSatish Balay else ncols = n-i; 3847ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3859566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 3867ef1d9bdSSatish Balay i = j; 3878965ea79SLois Curfman McInnes } 3887ef1d9bdSSatish Balay } 3899566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 390910cf402Sprj- } 3918965ea79SLois Curfman McInnes 3929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 3939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 3943a40ed3dSBarry Smith PetscFunctionReturn(0); 3958965ea79SLois Curfman McInnes } 3968965ea79SLois Curfman McInnes 397dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3988965ea79SLois Curfman McInnes { 39939ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4003a40ed3dSBarry Smith 4013a40ed3dSBarry Smith PetscFunctionBegin; 4029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4033a40ed3dSBarry Smith PetscFunctionReturn(0); 4048965ea79SLois Curfman McInnes } 4058965ea79SLois Curfman McInnes 406637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4078965ea79SLois Curfman McInnes { 40839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 409637a0070SStefano Zampini PetscInt i,len,*lrows; 410637a0070SStefano Zampini 411637a0070SStefano Zampini PetscFunctionBegin; 412637a0070SStefano Zampini /* get locally owned rows */ 4139566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 414637a0070SStefano Zampini /* fix right hand side if needed */ 415637a0070SStefano Zampini if (x && b) { 41697b48c8fSBarry Smith const PetscScalar *xx; 41797b48c8fSBarry Smith PetscScalar *bb; 4188965ea79SLois Curfman McInnes 4199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4209566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 421637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4229566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 42497b48c8fSBarry Smith } 4259566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 426e2eb51b1SBarry Smith if (diag != 0.0) { 427637a0070SStefano Zampini Vec d; 428b9679d65SBarry Smith 4299566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4309566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 433b9679d65SBarry Smith } 4349566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4353a40ed3dSBarry Smith PetscFunctionReturn(0); 4368965ea79SLois Curfman McInnes } 4378965ea79SLois Curfman McInnes 438cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 439cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 440cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 441cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 442cc2e6a90SBarry Smith 443dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4448965ea79SLois Curfman McInnes { 44539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 446637a0070SStefano Zampini const PetscScalar *ax; 447637a0070SStefano Zampini PetscScalar *ay; 448d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 449c456f294SBarry Smith 4503a40ed3dSBarry Smith PetscFunctionBegin; 4516f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4529566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4539566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4589566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4593a40ed3dSBarry Smith PetscFunctionReturn(0); 4608965ea79SLois Curfman McInnes } 4618965ea79SLois Curfman McInnes 462dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4638965ea79SLois Curfman McInnes { 46439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 465637a0070SStefano Zampini const PetscScalar *ax; 466637a0070SStefano Zampini PetscScalar *ay; 467d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 468c456f294SBarry Smith 4693a40ed3dSBarry Smith PetscFunctionBegin; 4706f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4729566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4779566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4783a40ed3dSBarry Smith PetscFunctionReturn(0); 4798965ea79SLois Curfman McInnes } 4808965ea79SLois Curfman McInnes 481dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 482096963f5SLois Curfman McInnes { 483096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 484637a0070SStefano Zampini const PetscScalar *ax; 485637a0070SStefano Zampini PetscScalar *ay; 486d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 487096963f5SLois Curfman McInnes 4883a40ed3dSBarry Smith PetscFunctionBegin; 4896f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 4909566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 4919566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 4929566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 4939566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 4949566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 4959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 4969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 4979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 4983a40ed3dSBarry Smith PetscFunctionReturn(0); 499096963f5SLois Curfman McInnes } 500096963f5SLois Curfman McInnes 501dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 502096963f5SLois Curfman McInnes { 503096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 504637a0070SStefano Zampini const PetscScalar *ax; 505637a0070SStefano Zampini PetscScalar *ay; 506d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 507096963f5SLois Curfman McInnes 5083a40ed3dSBarry Smith PetscFunctionBegin; 5096f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5109566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5119566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5129566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5139566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5149566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5159566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5183a40ed3dSBarry Smith PetscFunctionReturn(0); 519096963f5SLois Curfman McInnes } 520096963f5SLois Curfman McInnes 521dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5228965ea79SLois Curfman McInnes { 52339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 524637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 52587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 526637a0070SStefano Zampini const PetscScalar *av; 527ed3cc1f0SBarry Smith 5283a40ed3dSBarry Smith PetscFunctionBegin; 5299566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 53208401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 533d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 534d0f46423SBarry Smith radd = A->rmap->rstart*m; 5359566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5369566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 53744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 538637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 539096963f5SLois Curfman McInnes } 5409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5423a40ed3dSBarry Smith PetscFunctionReturn(0); 5438965ea79SLois Curfman McInnes } 5448965ea79SLois Curfman McInnes 545dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5468965ea79SLois Curfman McInnes { 5473501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 548ed3cc1f0SBarry Smith 5493a40ed3dSBarry Smith PetscFunctionBegin; 550aa482453SBarry Smith #if defined(PETSC_USE_LOG) 551c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5528965ea79SLois Curfman McInnes #endif 5539566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 55428b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 55528b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5569566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 56101b82886SBarry Smith 5629566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5639566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5648baccfbdSHong Zhang 5659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5788baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5808baccfbdSHong Zhang #endif 581d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 583d24d4204SJose E. Roman #endif 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 5876718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 5906718818eSStefano Zampini #endif 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 6013a40ed3dSBarry Smith PetscFunctionReturn(0); 6028965ea79SLois Curfman McInnes } 60339ddd567SLois Curfman McInnes 60452c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 60552c5f739Sprj- 6069804daf3SBarry Smith #include <petscdraw.h> 6076849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6088965ea79SLois Curfman McInnes { 60939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 610616b8fbbSStefano Zampini PetscMPIInt rank; 61119fd82e9SBarry Smith PetscViewerType vtype; 612ace3abfcSBarry Smith PetscBool iascii,isdraw; 613b0a32e0cSBarry Smith PetscViewer sviewer; 614f3ef73ceSBarry Smith PetscViewerFormat format; 6158965ea79SLois Curfman McInnes 6163a40ed3dSBarry Smith PetscFunctionBegin; 6179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 62032077d6dSBarry Smith if (iascii) { 6219566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 623456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6244e220ebcSLois Curfman McInnes MatInfo info; 6259566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6269566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6289566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6306f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6313a40ed3dSBarry Smith PetscFunctionReturn(0); 632fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6333a40ed3dSBarry Smith PetscFunctionReturn(0); 6348965ea79SLois Curfman McInnes } 635f1af5d2fSBarry Smith } else if (isdraw) { 636b0a32e0cSBarry Smith PetscDraw draw; 637ace3abfcSBarry Smith PetscBool isnull; 638f1af5d2fSBarry Smith 6399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 641f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 642f1af5d2fSBarry Smith } 64377ed5343SBarry Smith 6447da1fb6eSBarry Smith { 6458965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6468965ea79SLois Curfman McInnes Mat A; 647d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 648ba8c8a56SBarry Smith PetscInt *cols; 649ba8c8a56SBarry Smith PetscScalar *vals; 6508965ea79SLois Curfman McInnes 6519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 652dd400576SPatrick Sanan if (rank == 0) { 6539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6543a40ed3dSBarry Smith } else { 6559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6568965ea79SLois Curfman McInnes } 6577adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6589566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6599566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6618965ea79SLois Curfman McInnes 66239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 66339ddd567SLois Curfman McInnes but it's quick for now */ 66451022da4SBarry Smith A->insertmode = INSERT_VALUES; 6652205254eSKarl Rupp 6662205254eSKarl Rupp row = mat->rmap->rstart; 6672205254eSKarl Rupp m = mdn->A->rmap->n; 6688965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6699566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6709566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6719566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 67239ddd567SLois Curfman McInnes row++; 6738965ea79SLois Curfman McInnes } 6748965ea79SLois Curfman McInnes 6759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6779566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 678dd400576SPatrick Sanan if (rank == 0) { 6799566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 6809566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 6818965ea79SLois Curfman McInnes } 6829566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6839566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 6858965ea79SLois Curfman McInnes } 6863a40ed3dSBarry Smith PetscFunctionReturn(0); 6878965ea79SLois Curfman McInnes } 6888965ea79SLois Curfman McInnes 689dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6908965ea79SLois Curfman McInnes { 691ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6928965ea79SLois Curfman McInnes 693433994e6SBarry Smith PetscFunctionBegin; 6949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 6979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 6980f5bd95cSBarry Smith 69932077d6dSBarry Smith if (iascii || issocket || isdraw) { 7009566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7010f5bd95cSBarry Smith } else if (isbinary) { 7029566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 70311aeaf0aSBarry Smith } 7043a40ed3dSBarry Smith PetscFunctionReturn(0); 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 707dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7088965ea79SLois Curfman McInnes { 7093501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7103501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7113966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7128965ea79SLois Curfman McInnes 7133a40ed3dSBarry Smith PetscFunctionBegin; 7144e220ebcSLois Curfman McInnes info->block_size = 1.0; 7152205254eSKarl Rupp 7169566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7172205254eSKarl Rupp 7184e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7194e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7208965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7214e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7224e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7234e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7244e220ebcSLois Curfman McInnes info->memory = isend[3]; 7254e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7268965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7282205254eSKarl Rupp 7294e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7304e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7314e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7324e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7334e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7348965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7351c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7362205254eSKarl Rupp 7374e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7384e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7394e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7404e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7414e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7428965ea79SLois Curfman McInnes } 7434e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7444e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7454e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7463a40ed3dSBarry Smith PetscFunctionReturn(0); 7478965ea79SLois Curfman McInnes } 7488965ea79SLois Curfman McInnes 749ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7508965ea79SLois Curfman McInnes { 75139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7528965ea79SLois Curfman McInnes 7533a40ed3dSBarry Smith PetscFunctionBegin; 75412c028f9SKris Buschelman switch (op) { 755512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 75612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 75712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 75843674050SBarry Smith MatCheckPreallocated(A,1); 7599566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 76012c028f9SKris Buschelman break; 76112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 76243674050SBarry Smith MatCheckPreallocated(A,1); 7634e0d8c25SBarry Smith a->roworiented = flg; 7649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 76512c028f9SKris Buschelman break; 7668c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 76713fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 76812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 769071fcb05SBarry Smith case MAT_SORTED_FULL: 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 77112c028f9SKris Buschelman break; 77212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7734e0d8c25SBarry Smith a->donotstash = flg; 77412c028f9SKris Buschelman break; 77577e54ba9SKris Buschelman case MAT_SYMMETRIC: 77677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7779a4540c5SBarry Smith case MAT_HERMITIAN: 7789a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 779600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7805d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 7819566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 78277e54ba9SKris Buschelman break; 78312c028f9SKris Buschelman default: 78498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7853a40ed3dSBarry Smith } 7863a40ed3dSBarry Smith PetscFunctionReturn(0); 7878965ea79SLois Curfman McInnes } 7888965ea79SLois Curfman McInnes 789dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7905b2fa520SLois Curfman McInnes { 7915b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 792637a0070SStefano Zampini const PetscScalar *l; 793637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 794637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7955b2fa520SLois Curfman McInnes 7965b2fa520SLois Curfman McInnes PetscFunctionBegin; 7979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 7989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 7999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8005b2fa520SLois Curfman McInnes if (ll) { 8019566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 80208401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8045b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8055b2fa520SLois Curfman McInnes x = l[i]; 806637a0070SStefano Zampini v = vv + i; 807637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8085b2fa520SLois Curfman McInnes } 8099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8109566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8115b2fa520SLois Curfman McInnes } 8125b2fa520SLois Curfman McInnes if (rr) { 813637a0070SStefano Zampini const PetscScalar *ar; 814637a0070SStefano Zampini 8159566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 81608401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8186f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8199566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8229566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8235b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8245b2fa520SLois Curfman McInnes x = r[i]; 825637a0070SStefano Zampini v = vv + i*lda; 8262205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8275b2fa520SLois Curfman McInnes } 8289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8299566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8305b2fa520SLois Curfman McInnes } 8319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8325b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8335b2fa520SLois Curfman McInnes } 8345b2fa520SLois Curfman McInnes 835dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 836096963f5SLois Curfman McInnes { 8373501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 83813f74950SBarry Smith PetscInt i,j; 839616b8fbbSStefano Zampini PetscMPIInt size; 840329f5518SBarry Smith PetscReal sum = 0.0; 841637a0070SStefano Zampini const PetscScalar *av,*v; 8423501a2bdSLois Curfman McInnes 8433a40ed3dSBarry Smith PetscFunctionBegin; 8449566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 845637a0070SStefano Zampini v = av; 8469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 847616b8fbbSStefano Zampini if (size == 1) { 8489566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8493501a2bdSLois Curfman McInnes } else { 8503501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 851d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 852329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8533501a2bdSLois Curfman McInnes } 8541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8558f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8573a40ed3dSBarry Smith } else if (type == NORM_1) { 858329f5518SBarry Smith PetscReal *tmp,*tmp2; 8599566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 860064f8208SBarry Smith *nrm = 0.0; 861637a0070SStefano Zampini v = av; 862d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 863d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 86467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8653501a2bdSLois Curfman McInnes } 8663501a2bdSLois Curfman McInnes } 8671c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 868d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 869064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8703501a2bdSLois Curfman McInnes } 8719566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8729566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8733a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 874329f5518SBarry Smith PetscReal ntemp; 8759566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 877ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8783501a2bdSLois Curfman McInnes } 8799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 8803a40ed3dSBarry Smith PetscFunctionReturn(0); 8813501a2bdSLois Curfman McInnes } 8823501a2bdSLois Curfman McInnes 883fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8843501a2bdSLois Curfman McInnes { 8853501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8863501a2bdSLois Curfman McInnes Mat B; 887d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 888637a0070SStefano Zampini PetscInt j,i,lda; 88987828ca2SBarry Smith PetscScalar *v; 8903501a2bdSLois Curfman McInnes 8913a40ed3dSBarry Smith PetscFunctionBegin; 892cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 8939566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 8949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 8959566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 8969566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 897637a0070SStefano Zampini } else B = *matout; 8983501a2bdSLois Curfman McInnes 899637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9019566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9033501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9041acff37aSSatish Balay for (j=0; j<n; j++) { 9059566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 906637a0070SStefano Zampini v += lda; 9073501a2bdSLois Curfman McInnes } 9089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9099566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 912cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9133501a2bdSLois Curfman McInnes *matout = B; 9143501a2bdSLois Curfman McInnes } else { 9159566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9163501a2bdSLois Curfman McInnes } 9173a40ed3dSBarry Smith PetscFunctionReturn(0); 918096963f5SLois Curfman McInnes } 919096963f5SLois Curfman McInnes 9206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 92152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9228965ea79SLois Curfman McInnes 9234994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 924273d9f13SBarry Smith { 925273d9f13SBarry Smith PetscFunctionBegin; 9269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9279566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 92818992e5dSStefano Zampini if (!A->preallocated) { 9299566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 93018992e5dSStefano Zampini } 931273d9f13SBarry Smith PetscFunctionReturn(0); 932273d9f13SBarry Smith } 933273d9f13SBarry Smith 934488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 935488007eeSBarry Smith { 936488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 937488007eeSBarry Smith 938488007eeSBarry Smith PetscFunctionBegin; 9399566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 940488007eeSBarry Smith PetscFunctionReturn(0); 941488007eeSBarry Smith } 942488007eeSBarry Smith 9437087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 944ba337c44SJed Brown { 945ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 946ba337c44SJed Brown 947ba337c44SJed Brown PetscFunctionBegin; 9489566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 949ba337c44SJed Brown PetscFunctionReturn(0); 950ba337c44SJed Brown } 951ba337c44SJed Brown 952ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 953ba337c44SJed Brown { 954ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 955ba337c44SJed Brown 956ba337c44SJed Brown PetscFunctionBegin; 9579566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 958ba337c44SJed Brown PetscFunctionReturn(0); 959ba337c44SJed Brown } 960ba337c44SJed Brown 961ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 962ba337c44SJed Brown { 963ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 964ba337c44SJed Brown 965ba337c44SJed Brown PetscFunctionBegin; 9669566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 967ba337c44SJed Brown PetscFunctionReturn(0); 968ba337c44SJed Brown } 969ba337c44SJed Brown 97049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 97149a6ff4bSBarry Smith { 972637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 97349a6ff4bSBarry Smith 97449a6ff4bSBarry Smith PetscFunctionBegin; 97528b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 97628b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9779566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 97849a6ff4bSBarry Smith PetscFunctionReturn(0); 97949a6ff4bSBarry Smith } 98049a6ff4bSBarry Smith 981857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 98252c5f739Sprj- 983857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 9840716a85fSBarry Smith { 985a873a8cdSSam Reynolds PetscInt i,m,n; 9860716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9870716a85fSBarry Smith PetscReal *work; 9880716a85fSBarry Smith 9890716a85fSBarry Smith PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 9919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 992857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 9939566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 994857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 9959566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 996a873a8cdSSam Reynolds } else { 9979566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 998a873a8cdSSam Reynolds } 999857cbf51SRichard Tran Mills if (type == NORM_2) { 10000716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10010716a85fSBarry Smith } 1002857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10040716a85fSBarry Smith } else { 10051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10060716a85fSBarry Smith } 10079566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1008857cbf51SRichard Tran Mills if (type == NORM_2) { 1009a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1010857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1011a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10120716a85fSBarry Smith } 10130716a85fSBarry Smith PetscFunctionReturn(0); 10140716a85fSBarry Smith } 10150716a85fSBarry Smith 1016637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10176947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10186947451fSStefano Zampini { 10196947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10206947451fSStefano Zampini PetscInt lda; 10216947451fSStefano Zampini 10226947451fSStefano Zampini PetscFunctionBegin; 102328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 102428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10256947451fSStefano Zampini if (!a->cvec) { 10269566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10279566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10286947451fSStefano Zampini } 10296947451fSStefano Zampini a->vecinuse = col + 1; 10309566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10319566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10329566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10336947451fSStefano Zampini *v = a->cvec; 10346947451fSStefano Zampini PetscFunctionReturn(0); 10356947451fSStefano Zampini } 10366947451fSStefano Zampini 10376947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10386947451fSStefano Zampini { 10396947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10406947451fSStefano Zampini 10416947451fSStefano Zampini PetscFunctionBegin; 104228b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 104328b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10446947451fSStefano Zampini a->vecinuse = 0; 10459566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10469566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10476947451fSStefano Zampini *v = NULL; 10486947451fSStefano Zampini PetscFunctionReturn(0); 10496947451fSStefano Zampini } 10506947451fSStefano Zampini 10516947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10526947451fSStefano Zampini { 10536947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10546947451fSStefano Zampini PetscInt lda; 10556947451fSStefano Zampini 10566947451fSStefano Zampini PetscFunctionBegin; 105728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 105828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10596947451fSStefano Zampini if (!a->cvec) { 10609566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10626947451fSStefano Zampini } 10636947451fSStefano Zampini a->vecinuse = col + 1; 10649566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10659566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 10669566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10679566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 10686947451fSStefano Zampini *v = a->cvec; 10696947451fSStefano Zampini PetscFunctionReturn(0); 10706947451fSStefano Zampini } 10716947451fSStefano Zampini 10726947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10736947451fSStefano Zampini { 10746947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10756947451fSStefano Zampini 10766947451fSStefano Zampini PetscFunctionBegin; 107728b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 107828b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 10796947451fSStefano Zampini a->vecinuse = 0; 10809566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 10819566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 10829566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10836947451fSStefano Zampini *v = NULL; 10846947451fSStefano Zampini PetscFunctionReturn(0); 10856947451fSStefano Zampini } 10866947451fSStefano Zampini 10876947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10886947451fSStefano Zampini { 10896947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10906947451fSStefano Zampini PetscInt lda; 10916947451fSStefano Zampini 10926947451fSStefano Zampini PetscFunctionBegin; 109328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 109428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10956947451fSStefano Zampini if (!a->cvec) { 10969566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10979566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10986947451fSStefano Zampini } 10996947451fSStefano Zampini a->vecinuse = col + 1; 11009566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11019566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11029566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11036947451fSStefano Zampini *v = a->cvec; 11046947451fSStefano Zampini PetscFunctionReturn(0); 11056947451fSStefano Zampini } 11066947451fSStefano Zampini 11076947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11086947451fSStefano Zampini { 11096947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11106947451fSStefano Zampini 11116947451fSStefano Zampini PetscFunctionBegin; 111228b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 111328b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11146947451fSStefano Zampini a->vecinuse = 0; 11159566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11169566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11176947451fSStefano Zampini *v = NULL; 11186947451fSStefano Zampini PetscFunctionReturn(0); 11196947451fSStefano Zampini } 11206947451fSStefano Zampini 1121637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1122637a0070SStefano Zampini { 1123637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1124637a0070SStefano Zampini 1125637a0070SStefano Zampini PetscFunctionBegin; 112628b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 112728b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11289566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1129637a0070SStefano Zampini PetscFunctionReturn(0); 1130637a0070SStefano Zampini } 1131637a0070SStefano Zampini 1132637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1133637a0070SStefano Zampini { 1134637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1135637a0070SStefano Zampini 1136637a0070SStefano Zampini PetscFunctionBegin; 113728b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 113828b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11399566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1140637a0070SStefano Zampini PetscFunctionReturn(0); 1141637a0070SStefano Zampini } 1142637a0070SStefano Zampini 1143d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1144d5ea218eSStefano Zampini { 1145d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1146d5ea218eSStefano Zampini 1147d5ea218eSStefano Zampini PetscFunctionBegin; 114828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11509566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1151d5ea218eSStefano Zampini PetscFunctionReturn(0); 1152d5ea218eSStefano Zampini } 1153d5ea218eSStefano Zampini 1154637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1155637a0070SStefano Zampini { 1156637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1157637a0070SStefano Zampini 1158637a0070SStefano Zampini PetscFunctionBegin; 11599566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1160637a0070SStefano Zampini PetscFunctionReturn(0); 1161637a0070SStefano Zampini } 1162637a0070SStefano Zampini 1163637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1164637a0070SStefano Zampini { 1165637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1166637a0070SStefano Zampini 1167637a0070SStefano Zampini PetscFunctionBegin; 11689566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1169637a0070SStefano Zampini PetscFunctionReturn(0); 1170637a0070SStefano Zampini } 1171637a0070SStefano Zampini 1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1173637a0070SStefano Zampini { 1174637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1175637a0070SStefano Zampini 1176637a0070SStefano Zampini PetscFunctionBegin; 11779566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1178637a0070SStefano Zampini PetscFunctionReturn(0); 1179637a0070SStefano Zampini } 1180637a0070SStefano Zampini 1181637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1182637a0070SStefano Zampini { 1183637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1184637a0070SStefano Zampini 1185637a0070SStefano Zampini PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1187637a0070SStefano Zampini PetscFunctionReturn(0); 1188637a0070SStefano Zampini } 1189637a0070SStefano Zampini 1190637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1191637a0070SStefano Zampini { 1192637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1193637a0070SStefano Zampini 1194637a0070SStefano Zampini PetscFunctionBegin; 11959566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1196637a0070SStefano Zampini PetscFunctionReturn(0); 1197637a0070SStefano Zampini } 1198637a0070SStefano Zampini 1199637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1200637a0070SStefano Zampini { 1201637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1202637a0070SStefano Zampini 1203637a0070SStefano Zampini PetscFunctionBegin; 12049566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1205637a0070SStefano Zampini PetscFunctionReturn(0); 1206637a0070SStefano Zampini } 1207637a0070SStefano Zampini 12086947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12096947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12106947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12116947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12126947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12136947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12145ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12156947451fSStefano Zampini 1216637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1217637a0070SStefano Zampini { 1218637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1219637a0070SStefano Zampini 1220637a0070SStefano Zampini PetscFunctionBegin; 122128b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 122228b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1223637a0070SStefano Zampini if (d->A) { 12249566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1225637a0070SStefano Zampini } 1226637a0070SStefano Zampini mat->boundtocpu = bind; 12276947451fSStefano Zampini if (!bind) { 12286947451fSStefano Zampini PetscBool iscuda; 12296947451fSStefano Zampini 12309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12316947451fSStefano Zampini if (!iscuda) { 12329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1233616b8fbbSStefano Zampini } 12349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1235616b8fbbSStefano Zampini if (!iscuda) { 12369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12376947451fSStefano Zampini } 12389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 12446947451fSStefano Zampini } else { 12459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1251616b8fbbSStefano Zampini } 1252616b8fbbSStefano Zampini if (d->cmat) { 12539566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12546947451fSStefano Zampini } 1255637a0070SStefano Zampini PetscFunctionReturn(0); 1256637a0070SStefano Zampini } 1257637a0070SStefano Zampini 1258637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1259637a0070SStefano Zampini { 1260637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1261637a0070SStefano Zampini PetscBool iscuda; 1262637a0070SStefano Zampini 1263637a0070SStefano Zampini PetscFunctionBegin; 1264d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 12659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1266637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 12679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 12689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1269637a0070SStefano Zampini if (!d->A) { 12709566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 12719566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 12729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1273637a0070SStefano Zampini } 12749566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 12759566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1276637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 12776f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1278637a0070SStefano Zampini PetscFunctionReturn(0); 1279637a0070SStefano Zampini } 1280637a0070SStefano Zampini #endif 1281637a0070SStefano Zampini 128273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 128373a71a0fSBarry Smith { 128473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 128573a71a0fSBarry Smith 128673a71a0fSBarry Smith PetscFunctionBegin; 12879566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 128873a71a0fSBarry Smith PetscFunctionReturn(0); 128973a71a0fSBarry Smith } 129073a71a0fSBarry Smith 12913b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 12923b49f96aSBarry Smith { 12933b49f96aSBarry Smith PetscFunctionBegin; 12943b49f96aSBarry Smith *missing = PETSC_FALSE; 12953b49f96aSBarry Smith PetscFunctionReturn(0); 12963b49f96aSBarry Smith } 12973b49f96aSBarry Smith 12984222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1299cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13006718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1301a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13026718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13036718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1304cc48ffa7SToby Isaac 13058965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 130609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 130709dc0095SBarry Smith MatGetRow_MPIDense, 130809dc0095SBarry Smith MatRestoreRow_MPIDense, 130909dc0095SBarry Smith MatMult_MPIDense, 131097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13117c922b88SBarry Smith MatMultTranspose_MPIDense, 13127c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1313f4259b30SLisandro Dalcin NULL, 1314f4259b30SLisandro Dalcin NULL, 1315f4259b30SLisandro Dalcin NULL, 1316f4259b30SLisandro Dalcin /* 10*/ NULL, 1317f4259b30SLisandro Dalcin NULL, 1318f4259b30SLisandro Dalcin NULL, 1319f4259b30SLisandro Dalcin NULL, 132009dc0095SBarry Smith MatTranspose_MPIDense, 132197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13226e4ee0c6SHong Zhang MatEqual_MPIDense, 132309dc0095SBarry Smith MatGetDiagonal_MPIDense, 13245b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 132509dc0095SBarry Smith MatNorm_MPIDense, 132697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 132709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 132809dc0095SBarry Smith MatSetOption_MPIDense, 132909dc0095SBarry Smith MatZeroEntries_MPIDense, 1330d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1331f4259b30SLisandro Dalcin NULL, 1332f4259b30SLisandro Dalcin NULL, 1333f4259b30SLisandro Dalcin NULL, 1334f4259b30SLisandro Dalcin NULL, 13354994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1336f4259b30SLisandro Dalcin NULL, 1337f4259b30SLisandro Dalcin NULL, 1338c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1339f4259b30SLisandro Dalcin NULL, 1340d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1341f4259b30SLisandro Dalcin NULL, 1342f4259b30SLisandro Dalcin NULL, 1343f4259b30SLisandro Dalcin NULL, 1344f4259b30SLisandro Dalcin NULL, 1345d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13467dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1347f4259b30SLisandro Dalcin NULL, 134809dc0095SBarry Smith MatGetValues_MPIDense, 1349a76f77c3SStefano Zampini MatCopy_MPIDense, 1350f4259b30SLisandro Dalcin /* 44*/ NULL, 135109dc0095SBarry Smith MatScale_MPIDense, 13527d68702bSBarry Smith MatShift_Basic, 1353f4259b30SLisandro Dalcin NULL, 1354f4259b30SLisandro Dalcin NULL, 135573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1356f4259b30SLisandro Dalcin NULL, 1357f4259b30SLisandro Dalcin NULL, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin /* 54*/ NULL, 1361f4259b30SLisandro Dalcin NULL, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 13657dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1366b9b97703SBarry Smith MatDestroy_MPIDense, 1367b9b97703SBarry Smith MatView_MPIDense, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin /* 64*/ NULL, 1371f4259b30SLisandro Dalcin NULL, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin /* 69*/ NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin /* 74*/ NULL, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 1385f4259b30SLisandro Dalcin /* 79*/ NULL, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 13895bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin /* 89*/ NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin /* 94*/ NULL, 1401f4259b30SLisandro Dalcin NULL, 14026718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1403cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1404f4259b30SLisandro Dalcin NULL, 14054222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408ba337c44SJed Brown MatConjugate_MPIDense, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin /*104*/ NULL, 1411ba337c44SJed Brown MatRealPart_MPIDense, 1412ba337c44SJed Brown MatImaginaryPart_MPIDense, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin /*109*/ NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 141849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14193b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1420f4259b30SLisandro Dalcin /*114*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /*119*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /*124*/ NULL, 1431a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin /*129*/ NULL, 1436f4259b30SLisandro Dalcin NULL, 14376718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1438cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /*134*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /*139*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 14504222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1451f4259b30SLisandro Dalcin /*145*/ NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL 1454ba337c44SJed Brown }; 14558965ea79SLois Curfman McInnes 14567087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1457a23d5eceSKris Buschelman { 1458637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1459637a0070SStefano Zampini PetscBool iscuda; 1460a23d5eceSKris Buschelman 1461a23d5eceSKris Buschelman PetscFunctionBegin; 146228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 14649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1465637a0070SStefano Zampini if (!a->A) { 14669566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 14679566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 14689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1469637a0070SStefano Zampini } 14709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 14719566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 14729566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1473637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 14746f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1475a23d5eceSKris Buschelman PetscFunctionReturn(0); 1476a23d5eceSKris Buschelman } 1477a23d5eceSKris Buschelman 14784e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14794e29119aSPierre Jolivet { 14804e29119aSPierre Jolivet Mat B,C; 14814e29119aSPierre Jolivet 14824e29119aSPierre Jolivet PetscFunctionBegin; 14839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 14849566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 14859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 14864e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14874e29119aSPierre Jolivet C = *newmat; 14884e29119aSPierre Jolivet } else C = NULL; 14899566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 14909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14914e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14929566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 14934e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14944e29119aSPierre Jolivet PetscFunctionReturn(0); 14954e29119aSPierre Jolivet } 14964e29119aSPierre Jolivet 14974e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14984e29119aSPierre Jolivet { 14994e29119aSPierre Jolivet Mat B,C; 15004e29119aSPierre Jolivet 15014e29119aSPierre Jolivet PetscFunctionBegin; 15029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15039566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15044e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15054e29119aSPierre Jolivet C = *newmat; 15064e29119aSPierre Jolivet } else C = NULL; 15079566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15094e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15109566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15114e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15124e29119aSPierre Jolivet PetscFunctionReturn(0); 15134e29119aSPierre Jolivet } 15144e29119aSPierre Jolivet 151565b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1516cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15178baccfbdSHong Zhang { 15188ea901baSHong Zhang Mat mat_elemental; 151932d7a744SHong Zhang PetscScalar *v; 152032d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15218ea901baSHong Zhang 15228baccfbdSHong Zhang PetscFunctionBegin; 1523378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1524378336b6SHong Zhang mat_elemental = *newmat; 15259566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1526378336b6SHong Zhang } else { 15279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15299566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15309566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15319566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1532378336b6SHong Zhang } 1533378336b6SHong Zhang 15349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 153532d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 153632d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15378ea901baSHong Zhang 1538637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15399566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15409566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15439566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15449566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15458ea901baSHong Zhang 1546511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15479566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15488ea901baSHong Zhang } else { 15498ea901baSHong Zhang *newmat = mat_elemental; 15508ea901baSHong Zhang } 15518baccfbdSHong Zhang PetscFunctionReturn(0); 15528baccfbdSHong Zhang } 155365b80a83SHong Zhang #endif 15548baccfbdSHong Zhang 1555af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 155686aefd0dSHong Zhang { 155786aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 155886aefd0dSHong Zhang 155986aefd0dSHong Zhang PetscFunctionBegin; 15609566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 156186aefd0dSHong Zhang PetscFunctionReturn(0); 156286aefd0dSHong Zhang } 156386aefd0dSHong Zhang 1564af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 156586aefd0dSHong Zhang { 156686aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156786aefd0dSHong Zhang 156886aefd0dSHong Zhang PetscFunctionBegin; 15699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 157086aefd0dSHong Zhang PetscFunctionReturn(0); 157186aefd0dSHong Zhang } 157286aefd0dSHong Zhang 157394e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 157494e2cb23SJakub Kruzik { 157594e2cb23SJakub Kruzik Mat_MPIDense *mat; 157694e2cb23SJakub Kruzik PetscInt m,nloc,N; 157794e2cb23SJakub Kruzik 157894e2cb23SJakub Kruzik PetscFunctionBegin; 15799566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 15809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 158194e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 158294e2cb23SJakub Kruzik PetscInt sum; 158394e2cb23SJakub Kruzik 158494e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 15859566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 158694e2cb23SJakub Kruzik } 158794e2cb23SJakub Kruzik /* Check sum(n) = N */ 15881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 158908401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 159094e2cb23SJakub Kruzik 15919566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 15929566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 159394e2cb23SJakub Kruzik } 159494e2cb23SJakub Kruzik 159594e2cb23SJakub Kruzik /* numeric phase */ 159694e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 15979566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 159894e2cb23SJakub Kruzik PetscFunctionReturn(0); 159994e2cb23SJakub Kruzik } 160094e2cb23SJakub Kruzik 1601637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1602637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1603637a0070SStefano Zampini { 1604637a0070SStefano Zampini Mat B; 1605637a0070SStefano Zampini Mat_MPIDense *m; 1606637a0070SStefano Zampini 1607637a0070SStefano Zampini PetscFunctionBegin; 1608637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16099566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1610637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16119566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1612637a0070SStefano Zampini } 1613637a0070SStefano Zampini 1614637a0070SStefano Zampini B = *newmat; 16159566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16169566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16179566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16189566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1633637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1634637a0070SStefano Zampini if (m->A) { 16359566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1636637a0070SStefano Zampini } 1637637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1638637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1639637a0070SStefano Zampini PetscFunctionReturn(0); 1640637a0070SStefano Zampini } 1641637a0070SStefano Zampini 1642637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1643637a0070SStefano Zampini { 1644637a0070SStefano Zampini Mat B; 1645637a0070SStefano Zampini Mat_MPIDense *m; 1646637a0070SStefano Zampini 1647637a0070SStefano Zampini PetscFunctionBegin; 1648637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16499566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1650637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16519566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1652637a0070SStefano Zampini } 1653637a0070SStefano Zampini 1654637a0070SStefano Zampini B = *newmat; 16559566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1672f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1673637a0070SStefano Zampini if (m->A) { 16749566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1675637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1676637a0070SStefano Zampini } else { 1677637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1678637a0070SStefano Zampini } 16799566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1680637a0070SStefano Zampini 1681637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1682637a0070SStefano Zampini PetscFunctionReturn(0); 1683637a0070SStefano Zampini } 1684637a0070SStefano Zampini #endif 1685637a0070SStefano Zampini 16866947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16876947451fSStefano Zampini { 16886947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16896947451fSStefano Zampini PetscInt lda; 16906947451fSStefano Zampini 16916947451fSStefano Zampini PetscFunctionBegin; 169228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 169328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 16946947451fSStefano Zampini if (!a->cvec) { 16959566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 16966947451fSStefano Zampini } 16976947451fSStefano Zampini a->vecinuse = col + 1; 16989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 16999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17009566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17016947451fSStefano Zampini *v = a->cvec; 17026947451fSStefano Zampini PetscFunctionReturn(0); 17036947451fSStefano Zampini } 17046947451fSStefano Zampini 17056947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17066947451fSStefano Zampini { 17076947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17086947451fSStefano Zampini 17096947451fSStefano Zampini PetscFunctionBegin; 171028b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 171128b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17126947451fSStefano Zampini a->vecinuse = 0; 17139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17149566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17156947451fSStefano Zampini *v = NULL; 17166947451fSStefano Zampini PetscFunctionReturn(0); 17176947451fSStefano Zampini } 17186947451fSStefano Zampini 17196947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17206947451fSStefano Zampini { 17216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17226947451fSStefano Zampini PetscInt lda; 17236947451fSStefano Zampini 17246947451fSStefano Zampini PetscFunctionBegin; 172528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 172628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17276947451fSStefano Zampini if (!a->cvec) { 17289566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17296947451fSStefano Zampini } 17306947451fSStefano Zampini a->vecinuse = col + 1; 17319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17329566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17339566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17349566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17356947451fSStefano Zampini *v = a->cvec; 17366947451fSStefano Zampini PetscFunctionReturn(0); 17376947451fSStefano Zampini } 17386947451fSStefano Zampini 17396947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17406947451fSStefano Zampini { 17416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17426947451fSStefano Zampini 17436947451fSStefano Zampini PetscFunctionBegin; 17445f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17455f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17466947451fSStefano Zampini a->vecinuse = 0; 17479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17489566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17499566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17506947451fSStefano Zampini *v = NULL; 17516947451fSStefano Zampini PetscFunctionReturn(0); 17526947451fSStefano Zampini } 17536947451fSStefano Zampini 17546947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17556947451fSStefano Zampini { 17566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17576947451fSStefano Zampini PetscInt lda; 17586947451fSStefano Zampini 17596947451fSStefano Zampini PetscFunctionBegin; 17605f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17615f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17626947451fSStefano Zampini if (!a->cvec) { 17639566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17646947451fSStefano Zampini } 17656947451fSStefano Zampini a->vecinuse = col + 1; 17669566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17689566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17696947451fSStefano Zampini *v = a->cvec; 17706947451fSStefano Zampini PetscFunctionReturn(0); 17716947451fSStefano Zampini } 17726947451fSStefano Zampini 17736947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17746947451fSStefano Zampini { 17756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 17785f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17795f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17806947451fSStefano Zampini a->vecinuse = 0; 17819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17829566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17836947451fSStefano Zampini *v = NULL; 17846947451fSStefano Zampini PetscFunctionReturn(0); 17856947451fSStefano Zampini } 17866947451fSStefano Zampini 17875ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 17885ea7661aSPierre Jolivet { 17895ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1790616b8fbbSStefano Zampini Mat_MPIDense *c; 1791616b8fbbSStefano Zampini MPI_Comm comm; 17925ea7661aSPierre Jolivet 17935ea7661aSPierre Jolivet PetscFunctionBegin; 17949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 17955f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17965f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17975ea7661aSPierre Jolivet if (!a->cmat) { 17989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 17999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18009566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18019566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1804616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 18059566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18069566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18095ea7661aSPierre Jolivet } 1810616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18115f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18129566063dSJacob Faibussowitsch PetscCall(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1813616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1814616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18155ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18165ea7661aSPierre Jolivet *v = a->cmat; 18175ea7661aSPierre Jolivet PetscFunctionReturn(0); 18185ea7661aSPierre Jolivet } 18195ea7661aSPierre Jolivet 18205ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18215ea7661aSPierre Jolivet { 18225ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1823616b8fbbSStefano Zampini Mat_MPIDense *c; 18245ea7661aSPierre Jolivet 18255ea7661aSPierre Jolivet PetscFunctionBegin; 18265f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18275f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18285f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18295ea7661aSPierre Jolivet a->matinuse = 0; 1830616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18325ea7661aSPierre Jolivet *v = NULL; 18335ea7661aSPierre Jolivet PetscFunctionReturn(0); 18345ea7661aSPierre Jolivet } 18355ea7661aSPierre Jolivet 1836002bc6daSRichard Tran Mills /*MC 1837002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1838002bc6daSRichard Tran Mills 1839002bc6daSRichard Tran Mills Options Database Keys: 1840002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1841002bc6daSRichard Tran Mills 1842002bc6daSRichard Tran Mills Level: beginner 1843002bc6daSRichard Tran Mills 1844db781477SPatrick Sanan .seealso: `MatCreateDense()` 1845002bc6daSRichard Tran Mills 1846002bc6daSRichard Tran Mills M*/ 18478cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1848273d9f13SBarry Smith { 1849273d9f13SBarry Smith Mat_MPIDense *a; 1850273d9f13SBarry Smith 1851273d9f13SBarry Smith PetscFunctionBegin; 18529566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1853b0a32e0cSBarry Smith mat->data = (void*)a; 18549566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1855273d9f13SBarry Smith 1856273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1857273d9f13SBarry Smith 1858273d9f13SBarry Smith /* build cache for off array entries formed */ 1859273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18602205254eSKarl Rupp 18619566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1862273d9f13SBarry Smith 1863273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1864f4259b30SLisandro Dalcin a->lvec = NULL; 1865f4259b30SLisandro Dalcin a->Mvctx = NULL; 1866273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1867273d9f13SBarry Smith 18689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 18699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 18709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 18719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 18729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 18739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 18749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 18759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 18769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 18779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 18789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 18799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 18809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 18819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 18829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 18839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 18849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 18859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 18869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 18879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 18889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 18898baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 18918baccfbdSHong Zhang #endif 1892d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1894d24d4204SJose E. Roman #endif 1895637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1897637a0070SStefano Zampini #endif 18989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 18999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19016718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19046718818eSStefano Zampini #endif 19058949adfdSHong Zhang 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1909273d9f13SBarry Smith PetscFunctionReturn(0); 1910273d9f13SBarry Smith } 1911273d9f13SBarry Smith 1912209238afSKris Buschelman /*MC 1913637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1914637a0070SStefano Zampini 1915637a0070SStefano Zampini Options Database Keys: 1916637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1917637a0070SStefano Zampini 1918637a0070SStefano Zampini Level: beginner 1919637a0070SStefano Zampini 1920637a0070SStefano Zampini .seealso: 1921637a0070SStefano Zampini 1922637a0070SStefano Zampini M*/ 1923637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1924a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1925637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1926637a0070SStefano Zampini { 1927637a0070SStefano Zampini PetscFunctionBegin; 19289566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19299566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19309566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1931637a0070SStefano Zampini PetscFunctionReturn(0); 1932637a0070SStefano Zampini } 1933637a0070SStefano Zampini #endif 1934637a0070SStefano Zampini 1935637a0070SStefano Zampini /*MC 1936002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1937209238afSKris Buschelman 1938209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1939209238afSKris Buschelman and MATMPIDENSE otherwise. 1940209238afSKris Buschelman 1941209238afSKris Buschelman Options Database Keys: 1942209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1943209238afSKris Buschelman 1944209238afSKris Buschelman Level: beginner 1945209238afSKris Buschelman 1946*c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 19476947451fSStefano Zampini M*/ 19486947451fSStefano Zampini 19496947451fSStefano Zampini /*MC 19506947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19516947451fSStefano Zampini 19526947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19536947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19546947451fSStefano Zampini 19556947451fSStefano Zampini Options Database Keys: 19566947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19576947451fSStefano Zampini 19586947451fSStefano Zampini Level: beginner 19596947451fSStefano Zampini 1960*c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 1961209238afSKris Buschelman M*/ 1962209238afSKris Buschelman 1963273d9f13SBarry Smith /*@C 1964273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1965273d9f13SBarry Smith 19668f490ea3SStefano Zampini Collective 1967273d9f13SBarry Smith 1968273d9f13SBarry Smith Input Parameters: 19691c4f3114SJed Brown . B - the matrix 19700298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1971273d9f13SBarry Smith to control all matrix memory allocation. 1972273d9f13SBarry Smith 1973273d9f13SBarry Smith Notes: 1974273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1975273d9f13SBarry Smith storage by columns. 1976273d9f13SBarry Smith 1977273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1978273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19790298fd71SBarry Smith set data=NULL. 1980273d9f13SBarry Smith 1981273d9f13SBarry Smith Level: intermediate 1982273d9f13SBarry Smith 1983db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1984273d9f13SBarry Smith @*/ 19851c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1986273d9f13SBarry Smith { 1987273d9f13SBarry Smith PetscFunctionBegin; 1988d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1989cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 1990273d9f13SBarry Smith PetscFunctionReturn(0); 1991273d9f13SBarry Smith } 1992273d9f13SBarry Smith 1993d3042a70SBarry Smith /*@ 1994637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 1995d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1996d3042a70SBarry Smith into a matrix 1997d3042a70SBarry Smith 1998d3042a70SBarry Smith Not Collective 1999d3042a70SBarry Smith 2000d3042a70SBarry Smith Input Parameters: 2001d3042a70SBarry Smith + mat - the matrix 2002d3042a70SBarry Smith - array - the array in column major order 2003d3042a70SBarry Smith 2004d3042a70SBarry Smith Notes: 2005d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2006d3042a70SBarry Smith freed when the matrix is destroyed. 2007d3042a70SBarry Smith 2008d3042a70SBarry Smith Level: developer 2009d3042a70SBarry Smith 2010db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2011d3042a70SBarry Smith 2012d3042a70SBarry Smith @*/ 2013637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2014d3042a70SBarry Smith { 2015d3042a70SBarry Smith PetscFunctionBegin; 2016d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2017cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20189566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2019637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2020637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2021637a0070SStefano Zampini #endif 2022d3042a70SBarry Smith PetscFunctionReturn(0); 2023d3042a70SBarry Smith } 2024d3042a70SBarry Smith 2025d3042a70SBarry Smith /*@ 2026d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2027d3042a70SBarry Smith 2028d3042a70SBarry Smith Not Collective 2029d3042a70SBarry Smith 2030d3042a70SBarry Smith Input Parameters: 2031d3042a70SBarry Smith . mat - the matrix 2032d3042a70SBarry Smith 2033d3042a70SBarry Smith Notes: 2034d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2035d3042a70SBarry Smith 2036d3042a70SBarry Smith Level: developer 2037d3042a70SBarry Smith 2038db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith @*/ 2041d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2042d3042a70SBarry Smith { 2043d3042a70SBarry Smith PetscFunctionBegin; 2044d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2045cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2047d3042a70SBarry Smith PetscFunctionReturn(0); 2048d3042a70SBarry Smith } 2049d3042a70SBarry Smith 2050d5ea218eSStefano Zampini /*@ 2051d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2052d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2053d5ea218eSStefano Zampini into a matrix 2054d5ea218eSStefano Zampini 2055d5ea218eSStefano Zampini Not Collective 2056d5ea218eSStefano Zampini 2057d5ea218eSStefano Zampini Input Parameters: 2058d5ea218eSStefano Zampini + mat - the matrix 2059d5ea218eSStefano Zampini - array - the array in column major order 2060d5ea218eSStefano Zampini 2061d5ea218eSStefano Zampini Notes: 2062d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2063d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2064d5ea218eSStefano Zampini 2065d5ea218eSStefano Zampini Level: developer 2066d5ea218eSStefano Zampini 2067db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2068d5ea218eSStefano Zampini @*/ 2069d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2070d5ea218eSStefano Zampini { 2071d5ea218eSStefano Zampini PetscFunctionBegin; 2072d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2073cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20749566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2075d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2076d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2077d5ea218eSStefano Zampini #endif 2078d5ea218eSStefano Zampini PetscFunctionReturn(0); 2079d5ea218eSStefano Zampini } 2080d5ea218eSStefano Zampini 2081637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 20828965ea79SLois Curfman McInnes /*@C 2083637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2084637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2085637a0070SStefano Zampini into a matrix 2086637a0070SStefano Zampini 2087637a0070SStefano Zampini Not Collective 2088637a0070SStefano Zampini 2089637a0070SStefano Zampini Input Parameters: 2090637a0070SStefano Zampini + mat - the matrix 2091637a0070SStefano Zampini - array - the array in column major order 2092637a0070SStefano Zampini 2093637a0070SStefano Zampini Notes: 2094637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2095637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2096637a0070SStefano Zampini 2097637a0070SStefano Zampini Level: developer 2098637a0070SStefano Zampini 2099db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2100637a0070SStefano Zampini @*/ 2101637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2102637a0070SStefano Zampini { 2103637a0070SStefano Zampini PetscFunctionBegin; 2104d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2105cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21069566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2107637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2108637a0070SStefano Zampini PetscFunctionReturn(0); 2109637a0070SStefano Zampini } 2110637a0070SStefano Zampini 2111637a0070SStefano Zampini /*@C 2112637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2113637a0070SStefano Zampini 2114637a0070SStefano Zampini Not Collective 2115637a0070SStefano Zampini 2116637a0070SStefano Zampini Input Parameters: 2117637a0070SStefano Zampini . mat - the matrix 2118637a0070SStefano Zampini 2119637a0070SStefano Zampini Notes: 2120637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2121637a0070SStefano Zampini 2122637a0070SStefano Zampini Level: developer 2123637a0070SStefano Zampini 2124db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2125637a0070SStefano Zampini 2126637a0070SStefano Zampini @*/ 2127637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2128637a0070SStefano Zampini { 2129637a0070SStefano Zampini PetscFunctionBegin; 2130d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2131cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21329566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2133637a0070SStefano Zampini PetscFunctionReturn(0); 2134637a0070SStefano Zampini } 2135637a0070SStefano Zampini 2136637a0070SStefano Zampini /*@C 2137d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2138d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2139d5ea218eSStefano Zampini into a matrix 2140d5ea218eSStefano Zampini 2141d5ea218eSStefano Zampini Not Collective 2142d5ea218eSStefano Zampini 2143d5ea218eSStefano Zampini Input Parameters: 2144d5ea218eSStefano Zampini + mat - the matrix 2145d5ea218eSStefano Zampini - array - the array in column major order 2146d5ea218eSStefano Zampini 2147d5ea218eSStefano Zampini Notes: 2148d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2149d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2150d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2151d5ea218eSStefano Zampini 2152d5ea218eSStefano Zampini Level: developer 2153d5ea218eSStefano Zampini 2154db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2155d5ea218eSStefano Zampini @*/ 2156d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2157d5ea218eSStefano Zampini { 2158d5ea218eSStefano Zampini PetscFunctionBegin; 2159d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2160cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21619566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2162d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2163d5ea218eSStefano Zampini PetscFunctionReturn(0); 2164d5ea218eSStefano Zampini } 2165d5ea218eSStefano Zampini 2166d5ea218eSStefano Zampini /*@C 2167637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2168637a0070SStefano Zampini 2169637a0070SStefano Zampini Not Collective 2170637a0070SStefano Zampini 2171637a0070SStefano Zampini Input Parameters: 2172637a0070SStefano Zampini . A - the matrix 2173637a0070SStefano Zampini 2174637a0070SStefano Zampini Output Parameters 2175637a0070SStefano Zampini . array - the GPU array in column major order 2176637a0070SStefano Zampini 2177637a0070SStefano Zampini Notes: 2178637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini Level: developer 2181637a0070SStefano Zampini 2182db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2183637a0070SStefano Zampini @*/ 2184637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2185637a0070SStefano Zampini { 2186637a0070SStefano Zampini PetscFunctionBegin; 2187d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2188cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 21899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2190637a0070SStefano Zampini PetscFunctionReturn(0); 2191637a0070SStefano Zampini } 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini /*@C 2194637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini Not Collective 2197637a0070SStefano Zampini 2198637a0070SStefano Zampini Input Parameters: 2199637a0070SStefano Zampini + A - the matrix 2200637a0070SStefano Zampini - array - the GPU array in column major order 2201637a0070SStefano Zampini 2202637a0070SStefano Zampini Notes: 2203637a0070SStefano Zampini 2204637a0070SStefano Zampini Level: developer 2205637a0070SStefano Zampini 2206db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2207637a0070SStefano Zampini @*/ 2208637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2209637a0070SStefano Zampini { 2210637a0070SStefano Zampini PetscFunctionBegin; 2211d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2212cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22139566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2214637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2215637a0070SStefano Zampini PetscFunctionReturn(0); 2216637a0070SStefano Zampini } 2217637a0070SStefano Zampini 2218637a0070SStefano Zampini /*@C 2219637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2220637a0070SStefano Zampini 2221637a0070SStefano Zampini Not Collective 2222637a0070SStefano Zampini 2223637a0070SStefano Zampini Input Parameters: 2224637a0070SStefano Zampini . A - the matrix 2225637a0070SStefano Zampini 2226637a0070SStefano Zampini Output Parameters 2227637a0070SStefano Zampini . array - the GPU array in column major order 2228637a0070SStefano Zampini 2229637a0070SStefano Zampini Notes: 2230637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Level: developer 2233637a0070SStefano Zampini 2234db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2235637a0070SStefano Zampini @*/ 2236637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2237637a0070SStefano Zampini { 2238637a0070SStefano Zampini PetscFunctionBegin; 2239d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2240cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2241637a0070SStefano Zampini PetscFunctionReturn(0); 2242637a0070SStefano Zampini } 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini /*@C 2245637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2246637a0070SStefano Zampini 2247637a0070SStefano Zampini Not Collective 2248637a0070SStefano Zampini 2249637a0070SStefano Zampini Input Parameters: 2250637a0070SStefano Zampini + A - the matrix 2251637a0070SStefano Zampini - array - the GPU array in column major order 2252637a0070SStefano Zampini 2253637a0070SStefano Zampini Notes: 2254637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini Level: developer 2257637a0070SStefano Zampini 2258db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2259637a0070SStefano Zampini @*/ 2260637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2261637a0070SStefano Zampini { 2262637a0070SStefano Zampini PetscFunctionBegin; 2263cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2264637a0070SStefano Zampini PetscFunctionReturn(0); 2265637a0070SStefano Zampini } 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini /*@C 2268637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2269637a0070SStefano Zampini 2270637a0070SStefano Zampini Not Collective 2271637a0070SStefano Zampini 2272637a0070SStefano Zampini Input Parameters: 2273637a0070SStefano Zampini . A - the matrix 2274637a0070SStefano Zampini 2275637a0070SStefano Zampini Output Parameters 2276637a0070SStefano Zampini . array - the GPU array in column major order 2277637a0070SStefano Zampini 2278637a0070SStefano Zampini Notes: 2279637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Level: developer 2282637a0070SStefano Zampini 2283db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2284637a0070SStefano Zampini @*/ 2285637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2286637a0070SStefano Zampini { 2287637a0070SStefano Zampini PetscFunctionBegin; 2288d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2289cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 22909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2291637a0070SStefano Zampini PetscFunctionReturn(0); 2292637a0070SStefano Zampini } 2293637a0070SStefano Zampini 2294637a0070SStefano Zampini /*@C 2295637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini Not Collective 2298637a0070SStefano Zampini 2299637a0070SStefano Zampini Input Parameters: 2300637a0070SStefano Zampini + A - the matrix 2301637a0070SStefano Zampini - array - the GPU array in column major order 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini Notes: 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Level: developer 2306637a0070SStefano Zampini 2307db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2308637a0070SStefano Zampini @*/ 2309637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2310637a0070SStefano Zampini { 2311637a0070SStefano Zampini PetscFunctionBegin; 2312d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2313cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23149566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2315637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2316637a0070SStefano Zampini PetscFunctionReturn(0); 2317637a0070SStefano Zampini } 2318637a0070SStefano Zampini #endif 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini /*@C 2321637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23228965ea79SLois Curfman McInnes 2323d083f849SBarry Smith Collective 2324db81eaa0SLois Curfman McInnes 23258965ea79SLois Curfman McInnes Input Parameters: 2326db81eaa0SLois Curfman McInnes + comm - MPI communicator 23278965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2328db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23298965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2330db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23316cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2332dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23338965ea79SLois Curfman McInnes 23348965ea79SLois Curfman McInnes Output Parameter: 2335477f1c0bSLois Curfman McInnes . A - the matrix 23368965ea79SLois Curfman McInnes 2337b259b22eSLois Curfman McInnes Notes: 233839ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 233939ddd567SLois Curfman McInnes storage by columns. 2340002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2341002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23428965ea79SLois Curfman McInnes 234318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 234418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23456cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 234618f449edSLois Curfman McInnes 23478965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23488965ea79SLois Curfman McInnes (possibly both). 23498965ea79SLois Curfman McInnes 2350027ccd11SLois Curfman McInnes Level: intermediate 2351027ccd11SLois Curfman McInnes 2352db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 23538965ea79SLois Curfman McInnes @*/ 235469b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23558965ea79SLois Curfman McInnes { 23563a40ed3dSBarry Smith PetscFunctionBegin; 23579566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 23596f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 23609566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 23616f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 23623a40ed3dSBarry Smith PetscFunctionReturn(0); 23638965ea79SLois Curfman McInnes } 23648965ea79SLois Curfman McInnes 2365637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2366637a0070SStefano Zampini /*@C 2367637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2368637a0070SStefano Zampini 2369637a0070SStefano Zampini Collective 2370637a0070SStefano Zampini 2371637a0070SStefano Zampini Input Parameters: 2372637a0070SStefano Zampini + comm - MPI communicator 2373637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2374637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2375637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2376637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2377637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2378637a0070SStefano Zampini to control matrix memory allocation. 2379637a0070SStefano Zampini 2380637a0070SStefano Zampini Output Parameter: 2381637a0070SStefano Zampini . A - the matrix 2382637a0070SStefano Zampini 2383637a0070SStefano Zampini Notes: 2384637a0070SStefano Zampini 2385637a0070SStefano Zampini Level: intermediate 2386637a0070SStefano Zampini 2387db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2388637a0070SStefano Zampini @*/ 2389637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2390637a0070SStefano Zampini { 2391637a0070SStefano Zampini PetscFunctionBegin; 23929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2393637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 23949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 23956f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 23969566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 23976f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2398637a0070SStefano Zampini PetscFunctionReturn(0); 2399637a0070SStefano Zampini } 2400637a0070SStefano Zampini #endif 2401637a0070SStefano Zampini 24026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24038965ea79SLois Curfman McInnes { 24048965ea79SLois Curfman McInnes Mat mat; 24053501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24068965ea79SLois Curfman McInnes 24073a40ed3dSBarry Smith PetscFunctionBegin; 2408f4259b30SLisandro Dalcin *newmat = NULL; 24099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24119566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2412834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24135aa7edbeSHong Zhang 2414d5f3da31SBarry Smith mat->factortype = A->factortype; 2415c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2416273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24178965ea79SLois Curfman McInnes 2418e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24193782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2420e04c1aa4SHong Zhang 24219566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24229566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24238965ea79SLois Curfman McInnes 24249566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24259566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 242601b82886SBarry Smith 24278965ea79SLois Curfman McInnes *newmat = mat; 24283a40ed3dSBarry Smith PetscFunctionReturn(0); 24298965ea79SLois Curfman McInnes } 24308965ea79SLois Curfman McInnes 2431eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2432eb91f321SVaclav Hapla { 243387d5ce66SSatish Balay PetscBool isbinary; 243487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 243587d5ce66SSatish Balay PetscBool ishdf5; 243687d5ce66SSatish Balay #endif 2437eb91f321SVaclav Hapla 2438eb91f321SVaclav Hapla PetscFunctionBegin; 2439eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2440eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2441eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24429566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 244487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24459566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 244687d5ce66SSatish Balay #endif 2447eb91f321SVaclav Hapla if (isbinary) { 24489566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2449eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 245087d5ce66SSatish Balay } else if (ishdf5) { 24519566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2452eb91f321SVaclav Hapla #endif 245398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2454eb91f321SVaclav Hapla PetscFunctionReturn(0); 2455eb91f321SVaclav Hapla } 2456eb91f321SVaclav Hapla 24576718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24586e4ee0c6SHong Zhang { 24596e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24606e4ee0c6SHong Zhang Mat a,b; 246190ace30eSBarry Smith 24626e4ee0c6SHong Zhang PetscFunctionBegin; 24636e4ee0c6SHong Zhang a = matA->A; 24646e4ee0c6SHong Zhang b = matB->A; 24652cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 24662cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 24676e4ee0c6SHong Zhang PetscFunctionReturn(0); 24686e4ee0c6SHong Zhang } 246990ace30eSBarry Smith 24706718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2471baa3c1c6SHong Zhang { 24726718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2473baa3c1c6SHong Zhang 2474baa3c1c6SHong Zhang PetscFunctionBegin; 24759566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 24769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 24779566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2478baa3c1c6SHong Zhang PetscFunctionReturn(0); 2479baa3c1c6SHong Zhang } 2480baa3c1c6SHong Zhang 24816718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2482cc48ffa7SToby Isaac { 24836718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2484cc48ffa7SToby Isaac 2485cc48ffa7SToby Isaac PetscFunctionBegin; 24869566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 24879566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 24889566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2489cc48ffa7SToby Isaac PetscFunctionReturn(0); 2490cc48ffa7SToby Isaac } 2491cc48ffa7SToby Isaac 24926718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2493cb20be35SHong Zhang { 2494baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 24956718818eSStefano Zampini Mat_TransMatMultDense *atb; 2496cb20be35SHong Zhang MPI_Comm comm; 24976718818eSStefano Zampini PetscMPIInt size,*recvcounts; 24986718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2499637a0070SStefano Zampini const PetscScalar *atbarray; 2500a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2501e68c0b26SHong Zhang const PetscInt *ranges; 2502cb20be35SHong Zhang 2503cb20be35SHong Zhang PetscFunctionBegin; 25046718818eSStefano Zampini MatCheckProduct(C,3); 25055f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25066718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25076718818eSStefano Zampini recvcounts = atb->recvcounts; 25086718818eSStefano Zampini sendbuf = atb->sendbuf; 25096718818eSStefano Zampini 25109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2512e68c0b26SHong Zhang 2513c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25149566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2515cb20be35SHong Zhang 25169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2517cb20be35SHong Zhang 2518660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25199566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25209566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2521637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2522baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2523a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2524cb20be35SHong Zhang } 2525cb20be35SHong Zhang } 25269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2527637a0070SStefano Zampini 2528c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2534cb20be35SHong Zhang PetscFunctionReturn(0); 2535cb20be35SHong Zhang } 2536cb20be35SHong Zhang 25376718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2538cb20be35SHong Zhang { 2539cb20be35SHong Zhang MPI_Comm comm; 2540baa3c1c6SHong Zhang PetscMPIInt size; 2541660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2542baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25436718818eSStefano Zampini PetscBool cisdense; 25440acaeb71SStefano Zampini PetscInt i; 25450acaeb71SStefano Zampini const PetscInt *ranges; 2546cb20be35SHong Zhang 2547cb20be35SHong Zhang PetscFunctionBegin; 25486718818eSStefano Zampini MatCheckProduct(C,3); 25495f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2551cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 255298921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2553cb20be35SHong Zhang } 2554cb20be35SHong Zhang 25554222ddf1SHong Zhang /* create matrix product C */ 25569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25586718818eSStefano Zampini if (!cisdense) { 25599566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 25606718818eSStefano Zampini } 25619566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2562baa3c1c6SHong Zhang 25634222ddf1SHong Zhang /* create data structure for reuse C */ 25649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 25659566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 25664222ddf1SHong Zhang cM = C->rmap->N; 25679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 25689566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 25690acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2570baa3c1c6SHong Zhang 25716718818eSStefano Zampini C->product->data = atb; 25726718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2573cb20be35SHong Zhang PetscFunctionReturn(0); 2574cb20be35SHong Zhang } 2575cb20be35SHong Zhang 25764222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2577cb20be35SHong Zhang { 2578cc48ffa7SToby Isaac MPI_Comm comm; 2579cc48ffa7SToby Isaac PetscMPIInt i, size; 2580cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2581cc48ffa7SToby Isaac PetscMPIInt tag; 25824222ddf1SHong Zhang PetscInt alg; 2583cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 25844222ddf1SHong Zhang Mat_Product *product = C->product; 25854222ddf1SHong Zhang PetscBool flg; 2586cc48ffa7SToby Isaac 2587cc48ffa7SToby Isaac PetscFunctionBegin; 25886718818eSStefano Zampini MatCheckProduct(C,4); 25895f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25904222ddf1SHong Zhang /* check local size of A and B */ 25915f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2592cc48ffa7SToby Isaac 25939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2594637a0070SStefano Zampini alg = flg ? 0 : 1; 2595cc48ffa7SToby Isaac 25964222ddf1SHong Zhang /* setup matrix product C */ 25979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 25989566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 25999566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26014222ddf1SHong Zhang 26024222ddf1SHong Zhang /* create data structure for reuse C */ 26039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26059566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2606cc48ffa7SToby Isaac abt->tag = tag; 2607faa55883SToby Isaac abt->alg = alg; 2608faa55883SToby Isaac switch (alg) { 26094222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2610cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2611cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26129566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2613faa55883SToby Isaac break; 26144222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2617faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2618faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2619faa55883SToby Isaac break; 2620faa55883SToby Isaac } 2621cc48ffa7SToby Isaac 26226718818eSStefano Zampini C->product->data = abt; 26236718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26244222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2625cc48ffa7SToby Isaac PetscFunctionReturn(0); 2626cc48ffa7SToby Isaac } 2627cc48ffa7SToby Isaac 2628faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2629cc48ffa7SToby Isaac { 2630cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26316718818eSStefano Zampini Mat_MatTransMultDense *abt; 2632cc48ffa7SToby Isaac MPI_Comm comm; 2633cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2634f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2635cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2636cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2637637a0070SStefano Zampini const PetscScalar *av,*bv; 263823fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2639cc48ffa7SToby Isaac MPI_Request reqs[2]; 2640cc48ffa7SToby Isaac const PetscInt *ranges; 2641cc48ffa7SToby Isaac 2642cc48ffa7SToby Isaac PetscFunctionBegin; 26436718818eSStefano Zampini MatCheckProduct(C,3); 26445f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26456718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 26489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26499566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 26509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 26519566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 26529566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 26539566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 26549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 26559566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 26569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 26579566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 26589566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2659cc48ffa7SToby Isaac bn = B->rmap->n; 2660637a0070SStefano Zampini if (blda == bn) { 2661637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2662cc48ffa7SToby Isaac } else { 2663cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2664cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2665cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2666637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2667cc48ffa7SToby Isaac } 2668cc48ffa7SToby Isaac } 2669cc48ffa7SToby Isaac } 2670cc48ffa7SToby Isaac if (size > 1) { 2671cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2672cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2673cc48ffa7SToby Isaac } else { 2674cc48ffa7SToby Isaac sendto = recvfrom = 0; 2675cc48ffa7SToby Isaac } 26769566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 26779566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2678cc48ffa7SToby Isaac recvisfrom = rank; 2679cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2680cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2681cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2682cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2683cc48ffa7SToby Isaac 2684cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2685cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2686cc48ffa7SToby Isaac sendsiz = cK * bn; 2687cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2688cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 26899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 26909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2691cc48ffa7SToby Isaac } 2692cc48ffa7SToby Isaac 2693cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 26949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 269550ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2696cc48ffa7SToby Isaac 2697cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2698cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 26999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2700cc48ffa7SToby Isaac } 2701cc48ffa7SToby Isaac bn = nextbn; 2702cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2703cc48ffa7SToby Isaac sendbuf = recvbuf; 2704cc48ffa7SToby Isaac } 27059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2710cc48ffa7SToby Isaac PetscFunctionReturn(0); 2711cc48ffa7SToby Isaac } 2712cc48ffa7SToby Isaac 2713faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2714faa55883SToby Isaac { 2715faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27166718818eSStefano Zampini Mat_MatTransMultDense *abt; 2717faa55883SToby Isaac MPI_Comm comm; 2718637a0070SStefano Zampini PetscMPIInt size; 2719637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2720637a0070SStefano Zampini const PetscScalar *av,*bv; 2721637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2722faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2723637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2724faa55883SToby Isaac 2725faa55883SToby Isaac PetscFunctionBegin; 27266718818eSStefano Zampini MatCheckProduct(C,3); 27275f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27286718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27319566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27329566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27369566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27379566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27389566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2739faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2740faa55883SToby Isaac bn = B->rmap->n; 2741faa55883SToby Isaac sendbuf = abt->buf[0]; 2742faa55883SToby Isaac recvbuf = abt->buf[1]; 2743faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2744faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2745637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2746faa55883SToby Isaac } 2747faa55883SToby Isaac } 27489566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27509566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27519566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 27529566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 275350ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2759faa55883SToby Isaac PetscFunctionReturn(0); 2760faa55883SToby Isaac } 2761faa55883SToby Isaac 2762faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2763faa55883SToby Isaac { 27646718818eSStefano Zampini Mat_MatTransMultDense *abt; 2765faa55883SToby Isaac 2766faa55883SToby Isaac PetscFunctionBegin; 27676718818eSStefano Zampini MatCheckProduct(C,3); 27685f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27696718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2770faa55883SToby Isaac switch (abt->alg) { 2771faa55883SToby Isaac case 1: 27729566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2773faa55883SToby Isaac break; 2774faa55883SToby Isaac default: 27759566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2776faa55883SToby Isaac break; 2777faa55883SToby Isaac } 2778faa55883SToby Isaac PetscFunctionReturn(0); 2779faa55883SToby Isaac } 2780faa55883SToby Isaac 27816718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2782320f2790SHong Zhang { 27836718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2784320f2790SHong Zhang 2785320f2790SHong Zhang PetscFunctionBegin; 27869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 27879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 27889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 27899566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2790320f2790SHong Zhang PetscFunctionReturn(0); 2791320f2790SHong Zhang } 2792320f2790SHong Zhang 27935242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2794320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2795320f2790SHong Zhang { 27966718818eSStefano Zampini Mat_MatMultDense *ab; 2797320f2790SHong Zhang 2798320f2790SHong Zhang PetscFunctionBegin; 27996718818eSStefano Zampini MatCheckProduct(C,3); 28005f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28016718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28029566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28039566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28049566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28059566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2806320f2790SHong Zhang PetscFunctionReturn(0); 2807320f2790SHong Zhang } 2808320f2790SHong Zhang 28096718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2810320f2790SHong Zhang { 2811320f2790SHong Zhang Mat Ae,Be,Ce; 2812320f2790SHong Zhang Mat_MatMultDense *ab; 2813320f2790SHong Zhang 2814320f2790SHong Zhang PetscFunctionBegin; 28156718818eSStefano Zampini MatCheckProduct(C,4); 28165f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28174222ddf1SHong Zhang /* check local size of A and B */ 2818320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 281998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2820320f2790SHong Zhang } 2821320f2790SHong Zhang 28224222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28269566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28279566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2828320f2790SHong Zhang 28299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28319566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28329566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28339566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2834320f2790SHong Zhang 28354222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28369566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28379566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28384222ddf1SHong Zhang 28394222ddf1SHong Zhang /* setup C */ 28409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28419566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 28429566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2843320f2790SHong Zhang 2844320f2790SHong Zhang /* create data structure for reuse Cdense */ 28459566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2846320f2790SHong Zhang ab->Ae = Ae; 2847320f2790SHong Zhang ab->Be = Be; 2848320f2790SHong Zhang ab->Ce = Ce; 28496718818eSStefano Zampini 28506718818eSStefano Zampini C->product->data = ab; 28516718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28524222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2853320f2790SHong Zhang PetscFunctionReturn(0); 2854320f2790SHong Zhang } 28554222ddf1SHong Zhang #endif 28564222ddf1SHong Zhang /* ----------------------------------------------- */ 28574222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28584222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2859320f2790SHong Zhang { 2860320f2790SHong Zhang PetscFunctionBegin; 28614222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28624222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2863320f2790SHong Zhang PetscFunctionReturn(0); 2864320f2790SHong Zhang } 28655242a7b1SHong Zhang #endif 286686aefd0dSHong Zhang 28674222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 28684222ddf1SHong Zhang { 28694222ddf1SHong Zhang Mat_Product *product = C->product; 28704222ddf1SHong Zhang Mat A = product->A,B=product->B; 28714222ddf1SHong Zhang 28724222ddf1SHong Zhang PetscFunctionBegin; 28734222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 287498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 28756718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 28766718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 28774222ddf1SHong Zhang PetscFunctionReturn(0); 28784222ddf1SHong Zhang } 28794222ddf1SHong Zhang 28804222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 28814222ddf1SHong Zhang { 28824222ddf1SHong Zhang Mat_Product *product = C->product; 28834222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 28844222ddf1SHong Zhang PetscInt alg,nalg = 2; 28854222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 28864222ddf1SHong Zhang 28874222ddf1SHong Zhang PetscFunctionBegin; 28884222ddf1SHong Zhang /* Set default algorithm */ 28894222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 28909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 28914222ddf1SHong Zhang if (flg) { 28929566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 28934222ddf1SHong Zhang } 28944222ddf1SHong Zhang 28954222ddf1SHong Zhang /* Get runtime option */ 28964222ddf1SHong Zhang if (product->api_user) { 2897d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 28989566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2899d0609cedSBarry Smith PetscOptionsEnd(); 29004222ddf1SHong Zhang } else { 2901d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29029566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2903d0609cedSBarry Smith PetscOptionsEnd(); 29044222ddf1SHong Zhang } 29054222ddf1SHong Zhang if (flg) { 29069566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29074222ddf1SHong Zhang } 29084222ddf1SHong Zhang 29094222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29104222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29114222ddf1SHong Zhang PetscFunctionReturn(0); 29124222ddf1SHong Zhang } 29134222ddf1SHong Zhang 29144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29154222ddf1SHong Zhang { 29164222ddf1SHong Zhang Mat_Product *product = C->product; 29174222ddf1SHong Zhang 29184222ddf1SHong Zhang PetscFunctionBegin; 29194222ddf1SHong Zhang switch (product->type) { 29204222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29214222ddf1SHong Zhang case MATPRODUCT_AB: 29229566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29234222ddf1SHong Zhang break; 29244222ddf1SHong Zhang #endif 29254222ddf1SHong Zhang case MATPRODUCT_AtB: 29269566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29274222ddf1SHong Zhang break; 29284222ddf1SHong Zhang case MATPRODUCT_ABt: 29299566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29304222ddf1SHong Zhang break; 29316718818eSStefano Zampini default: 29326718818eSStefano Zampini break; 29334222ddf1SHong Zhang } 29344222ddf1SHong Zhang PetscFunctionReturn(0); 29354222ddf1SHong Zhang } 2936