1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ba8c8a56SBarry Smith #undef __FUNCT__ 12ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 13ab92ecdeSBarry Smith /*@ 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 16ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Input Parameter: 19ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Output Parameter: 22ab92ecdeSBarry Smith . B - the inner matrix 23ab92ecdeSBarry Smith 248e6c10adSSatish Balay Level: intermediate 258e6c10adSSatish Balay 26ab92ecdeSBarry Smith @*/ 27ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 28ab92ecdeSBarry Smith { 29ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 30ab92ecdeSBarry Smith PetscErrorCode ierr; 31ace3abfcSBarry Smith PetscBool flg; 32ab92ecdeSBarry Smith 33ab92ecdeSBarry Smith PetscFunctionBegin; 34251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 352205254eSKarl Rupp if (flg) *B = mat->A; 362205254eSKarl Rupp else *B = A; 37ab92ecdeSBarry Smith PetscFunctionReturn(0); 38ab92ecdeSBarry Smith } 39ab92ecdeSBarry Smith 40ab92ecdeSBarry Smith #undef __FUNCT__ 41ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 42ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 43ba8c8a56SBarry Smith { 44ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 45ba8c8a56SBarry Smith PetscErrorCode ierr; 46d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 47ba8c8a56SBarry Smith 48ba8c8a56SBarry Smith PetscFunctionBegin; 49e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 50ba8c8a56SBarry Smith lrow = row - rstart; 51ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 52ba8c8a56SBarry Smith PetscFunctionReturn(0); 53ba8c8a56SBarry Smith } 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith #undef __FUNCT__ 56ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 57ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 58ba8c8a56SBarry Smith { 59ba8c8a56SBarry Smith PetscErrorCode ierr; 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith PetscFunctionBegin; 62ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 674a2ae208SSatish Balay #undef __FUNCT__ 684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 700de54da6SSatish Balay { 710de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 726849ba73SBarry Smith PetscErrorCode ierr; 73d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7487828ca2SBarry Smith PetscScalar *array; 750de54da6SSatish Balay MPI_Comm comm; 7611bd1e4dSLisandro Dalcin Mat B; 770de54da6SSatish Balay 780de54da6SSatish Balay PetscFunctionBegin; 79e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 800de54da6SSatish Balay 8111bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin if (!B) { 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 878c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 898c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 994a2ae208SSatish Balay #undef __FUNCT__ 1004a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1028965ea79SLois Curfman McInnes { 10339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 104dfbe8321SBarry Smith PetscErrorCode ierr; 105d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 106ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1078965ea79SLois Curfman McInnes 1083a40ed3dSBarry Smith PetscFunctionBegin; 1098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1105ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 111e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1128965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1138965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11439b7565bSBarry Smith if (roworiented) { 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1163a40ed3dSBarry Smith } else { 1178965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1185ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 119e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12139b7565bSBarry Smith } 1228965ea79SLois Curfman McInnes } 1232205254eSKarl Rupp } else if (!A->donotstash) { 1245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12539b7565bSBarry Smith if (roworiented) { 126b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 127d36fbae8SSatish Balay } else { 128b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12939b7565bSBarry Smith } 130b49de8d1SLois Curfman McInnes } 131b49de8d1SLois Curfman McInnes } 1323a40ed3dSBarry Smith PetscFunctionReturn(0); 133b49de8d1SLois Curfman McInnes } 134b49de8d1SLois Curfman McInnes 1354a2ae208SSatish Balay #undef __FUNCT__ 1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 1594a2ae208SSatish Balay #undef __FUNCT__ 1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 162ff14e315SSatish Balay { 163ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 164dfbe8321SBarry Smith PetscErrorCode ierr; 165ff14e315SSatish Balay 1663a40ed3dSBarry Smith PetscFunctionBegin; 1678c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1683a40ed3dSBarry Smith PetscFunctionReturn(0); 169ff14e315SSatish Balay } 170ff14e315SSatish Balay 1714a2ae208SSatish Balay #undef __FUNCT__ 1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 174ca3fa75bSLois Curfman McInnes { 175ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 176ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1776849ba73SBarry Smith PetscErrorCode ierr; 1784aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1795d0c19d7SBarry Smith const PetscInt *irow,*icol; 18087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 181ca3fa75bSLois Curfman McInnes Mat newmat; 1824aa3045dSJed Brown IS iscol_local; 183ca3fa75bSLois Curfman McInnes 184ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1854aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 186ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1874aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 189b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1904aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 191ca3fa75bSLois Curfman McInnes 192ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1937eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1947eba5e9cSLois Curfman McInnes original matrix! */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1977eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 200ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 201e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2027eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 203ca3fa75bSLois Curfman McInnes newmat = *B; 204ca3fa75bSLois Curfman McInnes } else { 205ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 206ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2074aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2087adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2090298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 210ca3fa75bSLois Curfman McInnes } 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 213ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 214ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 215ca3fa75bSLois Curfman McInnes 2164aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21725a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 218ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2197eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes } 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Free work space */ 228ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2295bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes *B = newmat; 232ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 233ca3fa75bSLois Curfman McInnes } 234ca3fa75bSLois Curfman McInnes 2354a2ae208SSatish Balay #undef __FUNCT__ 2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 238ff14e315SSatish Balay { 23973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24073a71a0fSBarry Smith PetscErrorCode ierr; 24173a71a0fSBarry Smith 2423a40ed3dSBarry Smith PetscFunctionBegin; 2438c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2738965ea79SLois Curfman McInnes { 27439ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27713f74950SBarry Smith PetscMPIInt n; 27887828ca2SBarry Smith PetscScalar *val; 2798965ea79SLois Curfman McInnes 2803a40ed3dSBarry Smith PetscFunctionBegin; 2818965ea79SLois Curfman McInnes /* wait on receives */ 2827ef1d9bdSSatish Balay while (1) { 2838798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2847ef1d9bdSSatish Balay if (!flg) break; 2858965ea79SLois Curfman McInnes 2867ef1d9bdSSatish Balay for (i=0; i<n;) { 2877ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2882205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2892205254eSKarl Rupp if (row[j] != rstart) break; 2902205254eSKarl Rupp } 2917ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2927ef1d9bdSSatish Balay else ncols = n-i; 2937ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2944b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 2957ef1d9bdSSatish Balay i = j; 2968965ea79SLois Curfman McInnes } 2977ef1d9bdSSatish Balay } 2988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2998965ea79SLois Curfman McInnes 30039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 3036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes } 3063a40ed3dSBarry Smith PetscFunctionReturn(0); 3078965ea79SLois Curfman McInnes } 3088965ea79SLois Curfman McInnes 3094a2ae208SSatish Balay #undef __FUNCT__ 3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3128965ea79SLois Curfman McInnes { 313dfbe8321SBarry Smith PetscErrorCode ierr; 31439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3153a40ed3dSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3173a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 3198965ea79SLois Curfman McInnes } 3208965ea79SLois Curfman McInnes 3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3228965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3238965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3243501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3258965ea79SLois Curfman McInnes routine. 3268965ea79SLois Curfman McInnes */ 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3308965ea79SLois Curfman McInnes { 33139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3326849ba73SBarry Smith PetscErrorCode ierr; 333d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33476ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33513f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3367adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33713f74950SBarry Smith PetscInt *lens,*lrows,*values; 33813f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 339ce94432eSBarry Smith MPI_Comm comm; 3408965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3418965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 342ace3abfcSBarry Smith PetscBool found; 34397b48c8fSBarry Smith const PetscScalar *xx; 34497b48c8fSBarry Smith PetscScalar *bb; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 347ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 348ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 349b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3508965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 351f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 352037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3538965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3548965ea79SLois Curfman McInnes idx = rows[i]; 35535d8aa7fSBarry Smith found = PETSC_FALSE; 3568965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3578965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35876ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3598965ea79SLois Curfman McInnes } 3608965ea79SLois Curfman McInnes } 361e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3628965ea79SLois Curfman McInnes } 3632205254eSKarl Rupp nsends = 0; 36476ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36776ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3688965ea79SLois Curfman McInnes 3698965ea79SLois Curfman McInnes /* post receives: */ 370785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 371854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37313f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes } 3758965ea79SLois Curfman McInnes 3768965ea79SLois Curfman McInnes /* do sends: 3778965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3788965ea79SLois Curfman McInnes the ith processor 3798965ea79SLois Curfman McInnes */ 380854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 381854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 382854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3838965ea79SLois Curfman McInnes 3848965ea79SLois Curfman McInnes starts[0] = 0; 38576ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3862205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3872205254eSKarl Rupp 3882205254eSKarl Rupp starts[0] = 0; 38976ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3908965ea79SLois Curfman McInnes count = 0; 3918965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39276ec1555SBarry Smith if (sizes[2*i+1]) { 39376ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3948965ea79SLois Curfman McInnes } 3958965ea79SLois Curfman McInnes } 396606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes base = owners[rank]; 3998965ea79SLois Curfman McInnes 4008965ea79SLois Curfman McInnes /* wait on receives */ 401dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40274ed9c26SBarry Smith count = nrecvs; 40374ed9c26SBarry Smith slen = 0; 4048965ea79SLois Curfman McInnes while (count) { 405ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40713f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4082205254eSKarl Rupp 4098965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4108965ea79SLois Curfman McInnes lens[imdex] = n; 4118965ea79SLois Curfman McInnes slen += n; 4128965ea79SLois Curfman McInnes count--; 4138965ea79SLois Curfman McInnes } 414606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes 4168965ea79SLois Curfman McInnes /* move the data into the send scatter */ 417854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4188965ea79SLois Curfman McInnes count = 0; 4198965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4208965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4218965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4228965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42674ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 427606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42876ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes 43097b48c8fSBarry Smith /* fix right hand side if needed */ 43197b48c8fSBarry Smith if (x && b) { 43297b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43397b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43497b48c8fSBarry Smith for (i=0; i<slen; i++) { 43597b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43697b48c8fSBarry Smith } 43797b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43897b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43997b48c8fSBarry Smith } 44097b48c8fSBarry Smith 4418965ea79SLois Curfman McInnes /* actually zap the local rows */ 442b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 443e2eb51b1SBarry Smith if (diag != 0.0) { 444b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 445b9679d65SBarry Smith PetscInt m = ll->lda, i; 446b9679d65SBarry Smith 447b9679d65SBarry Smith for (i=0; i<slen; i++) { 448b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 449b9679d65SBarry Smith } 450b9679d65SBarry Smith } 451606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4528965ea79SLois Curfman McInnes 4538965ea79SLois Curfman McInnes /* wait on sends */ 4548965ea79SLois Curfman McInnes if (nsends) { 455785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 456ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 457606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes } 459606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 460606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 4628965ea79SLois Curfman McInnes } 4638965ea79SLois Curfman McInnes 464cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 465cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 466cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 468cc2e6a90SBarry Smith 4694a2ae208SSatish Balay #undef __FUNCT__ 4704a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 471dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4728965ea79SLois Curfman McInnes { 47339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 474dfbe8321SBarry Smith PetscErrorCode ierr; 475c456f294SBarry Smith 4763a40ed3dSBarry Smith PetscFunctionBegin; 477ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 478ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 479cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4803a40ed3dSBarry Smith PetscFunctionReturn(0); 4818965ea79SLois Curfman McInnes } 4828965ea79SLois Curfman McInnes 4834a2ae208SSatish Balay #undef __FUNCT__ 4844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 485dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4868965ea79SLois Curfman McInnes { 48739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 488dfbe8321SBarry Smith PetscErrorCode ierr; 489c456f294SBarry Smith 4903a40ed3dSBarry Smith PetscFunctionBegin; 491ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 492ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 493cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4943a40ed3dSBarry Smith PetscFunctionReturn(0); 4958965ea79SLois Curfman McInnes } 4968965ea79SLois Curfman McInnes 4974a2ae208SSatish Balay #undef __FUNCT__ 4984a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502dfbe8321SBarry Smith PetscErrorCode ierr; 50387828ca2SBarry Smith PetscScalar zero = 0.0; 504096963f5SLois Curfman McInnes 5053a40ed3dSBarry Smith PetscFunctionBegin; 5062dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 507cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 508ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 509ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5103a40ed3dSBarry Smith PetscFunctionReturn(0); 511096963f5SLois Curfman McInnes } 512096963f5SLois Curfman McInnes 5134a2ae208SSatish Balay #undef __FUNCT__ 5144a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 515dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 516096963f5SLois Curfman McInnes { 517096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 518dfbe8321SBarry Smith PetscErrorCode ierr; 519096963f5SLois Curfman McInnes 5203a40ed3dSBarry Smith PetscFunctionBegin; 5213501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 522cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 523ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 524ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5253a40ed3dSBarry Smith PetscFunctionReturn(0); 526096963f5SLois Curfman McInnes } 527096963f5SLois Curfman McInnes 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 530dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5318965ea79SLois Curfman McInnes { 53239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 537ed3cc1f0SBarry Smith 5383a40ed3dSBarry Smith PetscFunctionBegin; 5392dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5401ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 541096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 542e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 543d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 544d0f46423SBarry Smith radd = A->rmap->rstart*m; 54544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 546096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 547096963f5SLois Curfman McInnes } 5481ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5493a40ed3dSBarry Smith PetscFunctionReturn(0); 5508965ea79SLois Curfman McInnes } 5518965ea79SLois Curfman McInnes 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 554dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5558965ea79SLois Curfman McInnes { 5563501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 557dfbe8321SBarry Smith PetscErrorCode ierr; 558ed3cc1f0SBarry Smith 5593a40ed3dSBarry Smith PetscFunctionBegin; 560aa482453SBarry Smith #if defined(PETSC_USE_LOG) 561d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5628965ea79SLois Curfman McInnes #endif 5638798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5646bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5656bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5666bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56701b82886SBarry Smith 568bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 569dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5708baccfbdSHong Zhang 5718baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5728baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5738baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5748baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5758baccfbdSHong Zhang #endif 576bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 577bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 578bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 579bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5808baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5818baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5828baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5833a40ed3dSBarry Smith PetscFunctionReturn(0); 5848965ea79SLois Curfman McInnes } 58539ddd567SLois Curfman McInnes 5864a2ae208SSatish Balay #undef __FUNCT__ 5874a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5886849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5898965ea79SLois Curfman McInnes { 59039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 591dfbe8321SBarry Smith PetscErrorCode ierr; 592aa05aa95SBarry Smith PetscViewerFormat format; 593aa05aa95SBarry Smith int fd; 594d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 595aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 596578230a0SSatish Balay PetscScalar *work,*v,*vv; 597aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5987056b6fcSBarry Smith 5993a40ed3dSBarry Smith PetscFunctionBegin; 60039ddd567SLois Curfman McInnes if (mdn->size == 1) { 60139ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 602aa05aa95SBarry Smith } else { 603aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 604ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 605ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 606aa05aa95SBarry Smith 607aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 608f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 609aa05aa95SBarry Smith 610aa05aa95SBarry Smith if (!rank) { 611aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6120700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 613d0f46423SBarry Smith header[1] = mat->rmap->N; 614aa05aa95SBarry Smith header[2] = N; 615aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 616aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 617aa05aa95SBarry Smith 618aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 619d0f46423SBarry Smith mmax = mat->rmap->n; 620aa05aa95SBarry Smith for (i=1; i<size; i++) { 621d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6228965ea79SLois Curfman McInnes } 623785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 624aa05aa95SBarry Smith 625aa05aa95SBarry Smith /* write out local array, by rows */ 626d0f46423SBarry Smith m = mat->rmap->n; 627aa05aa95SBarry Smith v = a->v; 628aa05aa95SBarry Smith for (j=0; j<N; j++) { 629aa05aa95SBarry Smith for (i=0; i<m; i++) { 630578230a0SSatish Balay work[j + i*N] = *v++; 631aa05aa95SBarry Smith } 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 634aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 635aa05aa95SBarry Smith mmax = 0; 636aa05aa95SBarry Smith for (i=1; i<size; i++) { 637d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 638aa05aa95SBarry Smith } 639785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 640aa05aa95SBarry Smith for (k = 1; k < size; k++) { 641f8009846SMatthew Knepley v = vv; 642d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 643ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 644aa05aa95SBarry Smith 645aa05aa95SBarry Smith for (j = 0; j < N; j++) { 646aa05aa95SBarry Smith for (i = 0; i < m; i++) { 647578230a0SSatish Balay work[j + i*N] = *v++; 648aa05aa95SBarry Smith } 649aa05aa95SBarry Smith } 650aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 651aa05aa95SBarry Smith } 652aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 653578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 654aa05aa95SBarry Smith } else { 655ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 656aa05aa95SBarry Smith } 6576a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 658aa05aa95SBarry Smith } 6593a40ed3dSBarry Smith PetscFunctionReturn(0); 6608965ea79SLois Curfman McInnes } 6618965ea79SLois Curfman McInnes 6627da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6639804daf3SBarry Smith #include <petscdraw.h> 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6666849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6678965ea79SLois Curfman McInnes { 66839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6707da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 67119fd82e9SBarry Smith PetscViewerType vtype; 672ace3abfcSBarry Smith PetscBool iascii,isdraw; 673b0a32e0cSBarry Smith PetscViewer sviewer; 674f3ef73ceSBarry Smith PetscViewerFormat format; 6758965ea79SLois Curfman McInnes 6763a40ed3dSBarry Smith PetscFunctionBegin; 677251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 678251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 67932077d6dSBarry Smith if (iascii) { 680b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 681b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 682456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6834e220ebcSLois Curfman McInnes MatInfo info; 684888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6851575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6867b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 687b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6881575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6895d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6903a40ed3dSBarry Smith PetscFunctionReturn(0); 691fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6923a40ed3dSBarry Smith PetscFunctionReturn(0); 6938965ea79SLois Curfman McInnes } 694f1af5d2fSBarry Smith } else if (isdraw) { 695b0a32e0cSBarry Smith PetscDraw draw; 696ace3abfcSBarry Smith PetscBool isnull; 697f1af5d2fSBarry Smith 698b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 699b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 700f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 701f1af5d2fSBarry Smith } 70277ed5343SBarry Smith 7037da1fb6eSBarry Smith { 7048965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7058965ea79SLois Curfman McInnes Mat A; 706d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 707ba8c8a56SBarry Smith PetscInt *cols; 708ba8c8a56SBarry Smith PetscScalar *vals; 7098965ea79SLois Curfman McInnes 710ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7118965ea79SLois Curfman McInnes if (!rank) { 712f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7133a40ed3dSBarry Smith } else { 714f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes } 7167adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 717878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7180298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7193bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7208965ea79SLois Curfman McInnes 72139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72239ddd567SLois Curfman McInnes but it's quick for now */ 72351022da4SBarry Smith A->insertmode = INSERT_VALUES; 7242205254eSKarl Rupp 7252205254eSKarl Rupp row = mat->rmap->rstart; 7262205254eSKarl Rupp m = mdn->A->rmap->n; 7278965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 728ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 729ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 730ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 73139ddd567SLois Curfman McInnes row++; 7328965ea79SLois Curfman McInnes } 7338965ea79SLois Curfman McInnes 7346d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7356d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7363f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 737b9b97703SBarry Smith if (!rank) { 7387da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7398965ea79SLois Curfman McInnes } 7403f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 741b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7426bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7438965ea79SLois Curfman McInnes } 7443a40ed3dSBarry Smith PetscFunctionReturn(0); 7458965ea79SLois Curfman McInnes } 7468965ea79SLois Curfman McInnes 7474a2ae208SSatish Balay #undef __FUNCT__ 7484a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 749dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7508965ea79SLois Curfman McInnes { 751dfbe8321SBarry Smith PetscErrorCode ierr; 752ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7538965ea79SLois Curfman McInnes 754433994e6SBarry Smith PetscFunctionBegin; 755251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 756251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 757251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 758251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7590f5bd95cSBarry Smith 76032077d6dSBarry Smith if (iascii || issocket || isdraw) { 761f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7620f5bd95cSBarry Smith } else if (isbinary) { 7633a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 76411aeaf0aSBarry Smith } 7653a40ed3dSBarry Smith PetscFunctionReturn(0); 7668965ea79SLois Curfman McInnes } 7678965ea79SLois Curfman McInnes 7684a2ae208SSatish Balay #undef __FUNCT__ 7694a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 770dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7718965ea79SLois Curfman McInnes { 7723501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7733501a2bdSLois Curfman McInnes Mat mdn = mat->A; 774dfbe8321SBarry Smith PetscErrorCode ierr; 775329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7768965ea79SLois Curfman McInnes 7773a40ed3dSBarry Smith PetscFunctionBegin; 7784e220ebcSLois Curfman McInnes info->block_size = 1.0; 7792205254eSKarl Rupp 7804e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7812205254eSKarl Rupp 7824e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7834e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7848965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7854e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7864e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7874e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7884e220ebcSLois Curfman McInnes info->memory = isend[3]; 7894e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 791b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7922205254eSKarl Rupp 7934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7988965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 799b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8002205254eSKarl Rupp 8014e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8024e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8034e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8044e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8054e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8068965ea79SLois Curfman McInnes } 8074e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8084e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8094e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8103a40ed3dSBarry Smith PetscFunctionReturn(0); 8118965ea79SLois Curfman McInnes } 8128965ea79SLois Curfman McInnes 8134a2ae208SSatish Balay #undef __FUNCT__ 8144a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 815ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8168965ea79SLois Curfman McInnes { 81739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 818dfbe8321SBarry Smith PetscErrorCode ierr; 8198965ea79SLois Curfman McInnes 8203a40ed3dSBarry Smith PetscFunctionBegin; 82112c028f9SKris Buschelman switch (op) { 822512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82543674050SBarry Smith MatCheckPreallocated(A,1); 8264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82712c028f9SKris Buschelman break; 82812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82943674050SBarry Smith MatCheckPreallocated(A,1); 8304e0d8c25SBarry Smith a->roworiented = flg; 8314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 83212c028f9SKris Buschelman break; 8334e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 83413fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 836290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83712c028f9SKris Buschelman break; 83812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8394e0d8c25SBarry Smith a->donotstash = flg; 84012c028f9SKris Buschelman break; 84177e54ba9SKris Buschelman case MAT_SYMMETRIC: 84277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8439a4540c5SBarry Smith case MAT_HERMITIAN: 8449a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 845600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 846290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84777e54ba9SKris Buschelman break; 84812c028f9SKris Buschelman default: 849e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8503a40ed3dSBarry Smith } 8513a40ed3dSBarry Smith PetscFunctionReturn(0); 8528965ea79SLois Curfman McInnes } 8538965ea79SLois Curfman McInnes 8548965ea79SLois Curfman McInnes 8554a2ae208SSatish Balay #undef __FUNCT__ 8564a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 857dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8585b2fa520SLois Curfman McInnes { 8595b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8605b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 86187828ca2SBarry Smith PetscScalar *l,*r,x,*v; 862dfbe8321SBarry Smith PetscErrorCode ierr; 863d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8645b2fa520SLois Curfman McInnes 8655b2fa520SLois Curfman McInnes PetscFunctionBegin; 86672d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes if (ll) { 86872d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 869e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8701ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8715b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8725b2fa520SLois Curfman McInnes x = l[i]; 8735b2fa520SLois Curfman McInnes v = mat->v + i; 8745b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8755b2fa520SLois Curfman McInnes } 8761ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 877efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8785b2fa520SLois Curfman McInnes } 8795b2fa520SLois Curfman McInnes if (rr) { 880175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 881e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 882ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8855b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8865b2fa520SLois Curfman McInnes x = r[i]; 8875b2fa520SLois Curfman McInnes v = mat->v + i*m; 8882205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8895b2fa520SLois Curfman McInnes } 8901ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 891efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8925b2fa520SLois Curfman McInnes } 8935b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8945b2fa520SLois Curfman McInnes } 8955b2fa520SLois Curfman McInnes 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 898dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 899096963f5SLois Curfman McInnes { 9003501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 9013501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 902dfbe8321SBarry Smith PetscErrorCode ierr; 90313f74950SBarry Smith PetscInt i,j; 904329f5518SBarry Smith PetscReal sum = 0.0; 90587828ca2SBarry Smith PetscScalar *v = mat->v; 9063501a2bdSLois Curfman McInnes 9073a40ed3dSBarry Smith PetscFunctionBegin; 9083501a2bdSLois Curfman McInnes if (mdn->size == 1) { 909064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9103501a2bdSLois Curfman McInnes } else { 9113501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 912d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 913329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9143501a2bdSLois Curfman McInnes } 915b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9168f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 917dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9183a40ed3dSBarry Smith } else if (type == NORM_1) { 919329f5518SBarry Smith PetscReal *tmp,*tmp2; 920dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 92174ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 92274ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 923064f8208SBarry Smith *nrm = 0.0; 9243501a2bdSLois Curfman McInnes v = mat->v; 925d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 926d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92767e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9283501a2bdSLois Curfman McInnes } 9293501a2bdSLois Curfman McInnes } 930b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 931d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 932064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9333501a2bdSLois Curfman McInnes } 9348627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 935d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9363a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 937329f5518SBarry Smith PetscReal ntemp; 9383501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 939b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 940ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9413501a2bdSLois Curfman McInnes } 9423a40ed3dSBarry Smith PetscFunctionReturn(0); 9433501a2bdSLois Curfman McInnes } 9443501a2bdSLois Curfman McInnes 9454a2ae208SSatish Balay #undef __FUNCT__ 9464a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 947fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9483501a2bdSLois Curfman McInnes { 9493501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9503501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9513501a2bdSLois Curfman McInnes Mat B; 952d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9536849ba73SBarry Smith PetscErrorCode ierr; 95413f74950SBarry Smith PetscInt j,i; 95587828ca2SBarry Smith PetscScalar *v; 9563501a2bdSLois Curfman McInnes 9573a40ed3dSBarry Smith PetscFunctionBegin; 958ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 959fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 960ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 961d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9627adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9630298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 964fc4dec0aSBarry Smith } else { 965fc4dec0aSBarry Smith B = *matout; 966fc4dec0aSBarry Smith } 9673501a2bdSLois Curfman McInnes 968d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 969785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9703501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9711acff37aSSatish Balay for (j=0; j<n; j++) { 9723501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9733501a2bdSLois Curfman McInnes v += m; 9743501a2bdSLois Curfman McInnes } 975606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9766d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9776d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 978815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9793501a2bdSLois Curfman McInnes *matout = B; 9803501a2bdSLois Curfman McInnes } else { 98128be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9823501a2bdSLois Curfman McInnes } 9833a40ed3dSBarry Smith PetscFunctionReturn(0); 984096963f5SLois Curfman McInnes } 985096963f5SLois Curfman McInnes 98644cd7ae7SLois Curfman McInnes 9876849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 988d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9898965ea79SLois Curfman McInnes 9904a2ae208SSatish Balay #undef __FUNCT__ 9914994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9924994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 993273d9f13SBarry Smith { 994dfbe8321SBarry Smith PetscErrorCode ierr; 995273d9f13SBarry Smith 996273d9f13SBarry Smith PetscFunctionBegin; 997273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 998273d9f13SBarry Smith PetscFunctionReturn(0); 999273d9f13SBarry Smith } 1000273d9f13SBarry Smith 100130716080SHong Zhang #undef __FUNCT__ 1002488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 1003488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 1004488007eeSBarry Smith { 1005488007eeSBarry Smith PetscErrorCode ierr; 1006488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1007488007eeSBarry Smith 1008488007eeSBarry Smith PetscFunctionBegin; 1009488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1010a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1011488007eeSBarry Smith PetscFunctionReturn(0); 1012488007eeSBarry Smith } 1013488007eeSBarry Smith 1014ba337c44SJed Brown #undef __FUNCT__ 1015ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10167087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1017ba337c44SJed Brown { 1018ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1019ba337c44SJed Brown PetscErrorCode ierr; 1020ba337c44SJed Brown 1021ba337c44SJed Brown PetscFunctionBegin; 1022ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1023ba337c44SJed Brown PetscFunctionReturn(0); 1024ba337c44SJed Brown } 1025ba337c44SJed Brown 1026ba337c44SJed Brown #undef __FUNCT__ 1027ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1028ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1029ba337c44SJed Brown { 1030ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1031ba337c44SJed Brown PetscErrorCode ierr; 1032ba337c44SJed Brown 1033ba337c44SJed Brown PetscFunctionBegin; 1034ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1035ba337c44SJed Brown PetscFunctionReturn(0); 1036ba337c44SJed Brown } 1037ba337c44SJed Brown 1038ba337c44SJed Brown #undef __FUNCT__ 1039ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1040ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1041ba337c44SJed Brown { 1042ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1043ba337c44SJed Brown PetscErrorCode ierr; 1044ba337c44SJed Brown 1045ba337c44SJed Brown PetscFunctionBegin; 1046ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1047ba337c44SJed Brown PetscFunctionReturn(0); 1048ba337c44SJed Brown } 1049ba337c44SJed Brown 10500716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10510716a85fSBarry Smith #undef __FUNCT__ 10520716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10530716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10540716a85fSBarry Smith { 10550716a85fSBarry Smith PetscErrorCode ierr; 10560716a85fSBarry Smith PetscInt i,n; 10570716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10580716a85fSBarry Smith PetscReal *work; 10590716a85fSBarry Smith 10600716a85fSBarry Smith PetscFunctionBegin; 10610298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1062785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10630716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10640716a85fSBarry Smith if (type == NORM_2) { 10650716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10660716a85fSBarry Smith } 10670716a85fSBarry Smith if (type == NORM_INFINITY) { 1068b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10690716a85fSBarry Smith } else { 1070b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10710716a85fSBarry Smith } 10720716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10730716a85fSBarry Smith if (type == NORM_2) { 10748f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10750716a85fSBarry Smith } 10760716a85fSBarry Smith PetscFunctionReturn(0); 10770716a85fSBarry Smith } 10780716a85fSBarry Smith 107973a71a0fSBarry Smith #undef __FUNCT__ 108073a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 108173a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 108273a71a0fSBarry Smith { 108373a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 108473a71a0fSBarry Smith PetscErrorCode ierr; 108573a71a0fSBarry Smith PetscScalar *a; 108673a71a0fSBarry Smith PetscInt m,n,i; 108773a71a0fSBarry Smith 108873a71a0fSBarry Smith PetscFunctionBegin; 108973a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10908c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 109173a71a0fSBarry Smith for (i=0; i<m*n; i++) { 109273a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 109373a71a0fSBarry Smith } 10948c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 109573a71a0fSBarry Smith PetscFunctionReturn(0); 109673a71a0fSBarry Smith } 109773a71a0fSBarry Smith 1098fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1099fd4e9aacSBarry Smith 11003b49f96aSBarry Smith #undef __FUNCT__ 11013b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPIDense" 11023b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 11033b49f96aSBarry Smith { 11043b49f96aSBarry Smith PetscFunctionBegin; 11053b49f96aSBarry Smith *missing = PETSC_FALSE; 11063b49f96aSBarry Smith PetscFunctionReturn(0); 11073b49f96aSBarry Smith } 11083b49f96aSBarry Smith 11098965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 111009dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 111109dc0095SBarry Smith MatGetRow_MPIDense, 111209dc0095SBarry Smith MatRestoreRow_MPIDense, 111309dc0095SBarry Smith MatMult_MPIDense, 111497304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11157c922b88SBarry Smith MatMultTranspose_MPIDense, 11167c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11178965ea79SLois Curfman McInnes 0, 111809dc0095SBarry Smith 0, 111909dc0095SBarry Smith 0, 112097304618SKris Buschelman /* 10*/ 0, 112109dc0095SBarry Smith 0, 112209dc0095SBarry Smith 0, 112309dc0095SBarry Smith 0, 112409dc0095SBarry Smith MatTranspose_MPIDense, 112597304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11266e4ee0c6SHong Zhang MatEqual_MPIDense, 112709dc0095SBarry Smith MatGetDiagonal_MPIDense, 11285b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 112909dc0095SBarry Smith MatNorm_MPIDense, 113097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113109dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113209dc0095SBarry Smith MatSetOption_MPIDense, 113309dc0095SBarry Smith MatZeroEntries_MPIDense, 1134d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1135919b68f7SBarry Smith 0, 113601b82886SBarry Smith 0, 113701b82886SBarry Smith 0, 113801b82886SBarry Smith 0, 11394994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1140273d9f13SBarry Smith 0, 114109dc0095SBarry Smith 0, 1142*c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11438c778c55SBarry Smith 0, 1144d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 114509dc0095SBarry Smith 0, 114609dc0095SBarry Smith 0, 114709dc0095SBarry Smith 0, 114809dc0095SBarry Smith 0, 1149d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11502ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 115109dc0095SBarry Smith 0, 115209dc0095SBarry Smith MatGetValues_MPIDense, 115309dc0095SBarry Smith 0, 1154d519adbfSMatthew Knepley /* 44*/ 0, 115509dc0095SBarry Smith MatScale_MPIDense, 11567d68702bSBarry Smith MatShift_Basic, 115709dc0095SBarry Smith 0, 115809dc0095SBarry Smith 0, 115973a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 116009dc0095SBarry Smith 0, 116109dc0095SBarry Smith 0, 116209dc0095SBarry Smith 0, 116309dc0095SBarry Smith 0, 1164d519adbfSMatthew Knepley /* 54*/ 0, 116509dc0095SBarry Smith 0, 116609dc0095SBarry Smith 0, 116709dc0095SBarry Smith 0, 116809dc0095SBarry Smith 0, 1169d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1170b9b97703SBarry Smith MatDestroy_MPIDense, 1171b9b97703SBarry Smith MatView_MPIDense, 1172357abbc8SBarry Smith 0, 117397304618SKris Buschelman 0, 1174d519adbfSMatthew Knepley /* 64*/ 0, 117597304618SKris Buschelman 0, 117697304618SKris Buschelman 0, 117797304618SKris Buschelman 0, 117897304618SKris Buschelman 0, 1179d519adbfSMatthew Knepley /* 69*/ 0, 118097304618SKris Buschelman 0, 118197304618SKris Buschelman 0, 118297304618SKris Buschelman 0, 118397304618SKris Buschelman 0, 1184d519adbfSMatthew Knepley /* 74*/ 0, 118597304618SKris Buschelman 0, 118697304618SKris Buschelman 0, 118797304618SKris Buschelman 0, 118897304618SKris Buschelman 0, 1189d519adbfSMatthew Knepley /* 79*/ 0, 119097304618SKris Buschelman 0, 119197304618SKris Buschelman 0, 119297304618SKris Buschelman 0, 11935bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1194865e5f61SKris Buschelman 0, 1195865e5f61SKris Buschelman 0, 1196865e5f61SKris Buschelman 0, 1197865e5f61SKris Buschelman 0, 1198865e5f61SKris Buschelman 0, 11999775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1200320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1201320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 12029775878aSHong Zhang #else 12039775878aSHong Zhang /* 89*/ 0, 1204865e5f61SKris Buschelman 0, 12059775878aSHong Zhang #endif 1206fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 12072fbe02b9SBarry Smith 0, 1208ba337c44SJed Brown 0, 1209d519adbfSMatthew Knepley /* 94*/ 0, 1210865e5f61SKris Buschelman 0, 1211865e5f61SKris Buschelman 0, 1212ba337c44SJed Brown 0, 1213ba337c44SJed Brown 0, 1214ba337c44SJed Brown /* 99*/ 0, 1215ba337c44SJed Brown 0, 1216ba337c44SJed Brown 0, 1217ba337c44SJed Brown MatConjugate_MPIDense, 1218ba337c44SJed Brown 0, 1219ba337c44SJed Brown /*104*/ 0, 1220ba337c44SJed Brown MatRealPart_MPIDense, 1221ba337c44SJed Brown MatImaginaryPart_MPIDense, 122286d161a7SShri Abhyankar 0, 122386d161a7SShri Abhyankar 0, 122486d161a7SShri Abhyankar /*109*/ 0, 122586d161a7SShri Abhyankar 0, 122686d161a7SShri Abhyankar 0, 122786d161a7SShri Abhyankar 0, 12283b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 122986d161a7SShri Abhyankar /*114*/ 0, 123086d161a7SShri Abhyankar 0, 123186d161a7SShri Abhyankar 0, 123286d161a7SShri Abhyankar 0, 123386d161a7SShri Abhyankar 0, 123486d161a7SShri Abhyankar /*119*/ 0, 123586d161a7SShri Abhyankar 0, 123686d161a7SShri Abhyankar 0, 12370716a85fSBarry Smith 0, 12380716a85fSBarry Smith 0, 12390716a85fSBarry Smith /*124*/ 0, 12403964eb88SJed Brown MatGetColumnNorms_MPIDense, 12413964eb88SJed Brown 0, 12423964eb88SJed Brown 0, 12433964eb88SJed Brown 0, 12443964eb88SJed Brown /*129*/ 0, 1245cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1246cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1247cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12483964eb88SJed Brown 0, 12493964eb88SJed Brown /*134*/ 0, 12503964eb88SJed Brown 0, 12513964eb88SJed Brown 0, 12523964eb88SJed Brown 0, 12533964eb88SJed Brown 0, 12543964eb88SJed Brown /*139*/ 0, 1255f9426fe0SMark Adams 0, 12563964eb88SJed Brown 0 1257ba337c44SJed Brown }; 12588965ea79SLois Curfman McInnes 12594a2ae208SSatish Balay #undef __FUNCT__ 1260a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12617087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1262a23d5eceSKris Buschelman { 1263a23d5eceSKris Buschelman Mat_MPIDense *a; 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a23d5eceSKris Buschelman 1266a23d5eceSKris Buschelman PetscFunctionBegin; 1267a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1268a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1269a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1270a23d5eceSKris Buschelman 1271a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 127234ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 127334ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 127434ef9618SShri Abhyankar a->nvec = mat->cmap->n; 127534ef9618SShri Abhyankar 1276f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1277d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12785c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12795c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12803bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1281a23d5eceSKris Buschelman PetscFunctionReturn(0); 1282a23d5eceSKris Buschelman } 1283a23d5eceSKris Buschelman 128465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1285a23d5eceSKris Buschelman #undef __FUNCT__ 12868baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental" 1287cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12888baccfbdSHong Zhang { 12898ea901baSHong Zhang Mat mat_elemental; 12908ea901baSHong Zhang PetscErrorCode ierr; 129132d7a744SHong Zhang PetscScalar *v; 129232d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12938ea901baSHong Zhang 12948baccfbdSHong Zhang PetscFunctionBegin; 1295378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1296378336b6SHong Zhang mat_elemental = *newmat; 1297378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1298378336b6SHong Zhang } else { 1299378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1300378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1301378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1302378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 130332d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1304378336b6SHong Zhang } 1305378336b6SHong Zhang 130632d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 130732d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 130832d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 13098ea901baSHong Zhang 13108ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 131132d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 131232d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 13138ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13148ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 131532d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 131632d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 13178ea901baSHong Zhang 1318511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 131928be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13208ea901baSHong Zhang } else { 13218ea901baSHong Zhang *newmat = mat_elemental; 13228ea901baSHong Zhang } 13238baccfbdSHong Zhang PetscFunctionReturn(0); 13248baccfbdSHong Zhang } 132565b80a83SHong Zhang #endif 13268baccfbdSHong Zhang 13278baccfbdSHong Zhang #undef __FUNCT__ 13284a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 13298cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1330273d9f13SBarry Smith { 1331273d9f13SBarry Smith Mat_MPIDense *a; 1332dfbe8321SBarry Smith PetscErrorCode ierr; 1333273d9f13SBarry Smith 1334273d9f13SBarry Smith PetscFunctionBegin; 1335b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1336b0a32e0cSBarry Smith mat->data = (void*)a; 1337273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1338273d9f13SBarry Smith 1339273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1340ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1341ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1342273d9f13SBarry Smith 1343273d9f13SBarry Smith /* build cache for off array entries formed */ 1344273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13452205254eSKarl Rupp 1346ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1347273d9f13SBarry Smith 1348273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1349273d9f13SBarry Smith a->lvec = 0; 1350273d9f13SBarry Smith a->Mvctx = 0; 1351273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1352273d9f13SBarry Smith 1353bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1354bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13558baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13568baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13578baccfbdSHong Zhang #endif 1358bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1359bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1360bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1361bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13628949adfdSHong Zhang 13638949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13648949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13658949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 136638aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1367273d9f13SBarry Smith PetscFunctionReturn(0); 1368273d9f13SBarry Smith } 1369273d9f13SBarry Smith 1370209238afSKris Buschelman /*MC 1371002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1372209238afSKris Buschelman 1373209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1374209238afSKris Buschelman and MATMPIDENSE otherwise. 1375209238afSKris Buschelman 1376209238afSKris Buschelman Options Database Keys: 1377209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1378209238afSKris Buschelman 1379209238afSKris Buschelman Level: beginner 1380209238afSKris Buschelman 138101b82886SBarry Smith 1382209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1383209238afSKris Buschelman M*/ 1384209238afSKris Buschelman 13854a2ae208SSatish Balay #undef __FUNCT__ 13864a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1387273d9f13SBarry Smith /*@C 1388273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1389273d9f13SBarry Smith 1390273d9f13SBarry Smith Not collective 1391273d9f13SBarry Smith 1392273d9f13SBarry Smith Input Parameters: 13931c4f3114SJed Brown . B - the matrix 13940298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1395273d9f13SBarry Smith to control all matrix memory allocation. 1396273d9f13SBarry Smith 1397273d9f13SBarry Smith Notes: 1398273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1399273d9f13SBarry Smith storage by columns. 1400273d9f13SBarry Smith 1401273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1402273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14030298fd71SBarry Smith set data=NULL. 1404273d9f13SBarry Smith 1405273d9f13SBarry Smith Level: intermediate 1406273d9f13SBarry Smith 1407273d9f13SBarry Smith .keywords: matrix,dense, parallel 1408273d9f13SBarry Smith 1409273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1410273d9f13SBarry Smith @*/ 14111c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1412273d9f13SBarry Smith { 14134ac538c5SBarry Smith PetscErrorCode ierr; 1414273d9f13SBarry Smith 1415273d9f13SBarry Smith PetscFunctionBegin; 14161c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1417273d9f13SBarry Smith PetscFunctionReturn(0); 1418273d9f13SBarry Smith } 1419273d9f13SBarry Smith 14204a2ae208SSatish Balay #undef __FUNCT__ 142169b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 14228965ea79SLois Curfman McInnes /*@C 142369b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14248965ea79SLois Curfman McInnes 1425db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1426db81eaa0SLois Curfman McInnes 14278965ea79SLois Curfman McInnes Input Parameters: 1428db81eaa0SLois Curfman McInnes + comm - MPI communicator 14298965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1430db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14318965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1432db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14336cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1434dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14358965ea79SLois Curfman McInnes 14368965ea79SLois Curfman McInnes Output Parameter: 1437477f1c0bSLois Curfman McInnes . A - the matrix 14388965ea79SLois Curfman McInnes 1439b259b22eSLois Curfman McInnes Notes: 144039ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 144139ddd567SLois Curfman McInnes storage by columns. 14428965ea79SLois Curfman McInnes 144318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 144418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14456cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 144618f449edSLois Curfman McInnes 14478965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14488965ea79SLois Curfman McInnes (possibly both). 14498965ea79SLois Curfman McInnes 1450027ccd11SLois Curfman McInnes Level: intermediate 1451027ccd11SLois Curfman McInnes 145239ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14538965ea79SLois Curfman McInnes 145439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14558965ea79SLois Curfman McInnes @*/ 145669b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14578965ea79SLois Curfman McInnes { 14586849ba73SBarry Smith PetscErrorCode ierr; 145913f74950SBarry Smith PetscMPIInt size; 14608965ea79SLois Curfman McInnes 14613a40ed3dSBarry Smith PetscFunctionBegin; 1462f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1463f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1464273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1465273d9f13SBarry Smith if (size > 1) { 1466273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1467273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14686cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 14696cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 14706cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 14716cfe35ddSJose E. Roman } 1472273d9f13SBarry Smith } else { 1473273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1474273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14758c469469SLois Curfman McInnes } 14763a40ed3dSBarry Smith PetscFunctionReturn(0); 14778965ea79SLois Curfman McInnes } 14788965ea79SLois Curfman McInnes 14794a2ae208SSatish Balay #undef __FUNCT__ 14804a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14828965ea79SLois Curfman McInnes { 14838965ea79SLois Curfman McInnes Mat mat; 14843501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1485dfbe8321SBarry Smith PetscErrorCode ierr; 14868965ea79SLois Curfman McInnes 14873a40ed3dSBarry Smith PetscFunctionBegin; 14888965ea79SLois Curfman McInnes *newmat = 0; 1489ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1490d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14917adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1492834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1493e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14945aa7edbeSHong Zhang 1495d5f3da31SBarry Smith mat->factortype = A->factortype; 1496c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1497273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14988965ea79SLois Curfman McInnes 14998965ea79SLois Curfman McInnes a->size = oldmat->size; 15008965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1501e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1502b9b97703SBarry Smith a->nvec = oldmat->nvec; 15033782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1504e04c1aa4SHong Zhang 15051e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15061e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15078965ea79SLois Curfman McInnes 1508329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15095609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15103bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 151101b82886SBarry Smith 15128965ea79SLois Curfman McInnes *newmat = mat; 15133a40ed3dSBarry Smith PetscFunctionReturn(0); 15148965ea79SLois Curfman McInnes } 15158965ea79SLois Curfman McInnes 15164a2ae208SSatish Balay #undef __FUNCT__ 15175bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 15189d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 151986d161a7SShri Abhyankar { 152086d161a7SShri Abhyankar PetscErrorCode ierr; 152186d161a7SShri Abhyankar PetscMPIInt rank,size; 152274c13d95SBarry Smith const PetscInt *rowners; 152374c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 152486d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 15259d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 152686d161a7SShri Abhyankar 152786d161a7SShri Abhyankar PetscFunctionBegin; 152886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 152986d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 153086d161a7SShri Abhyankar 153174c13d95SBarry Smith /* determine ownership of rows and columns */ 153274c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 153374c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 153486d161a7SShri Abhyankar 153574c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 15369d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 15370298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15389d36ed5fSBarry Smith } 15398c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 154049467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 154174c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1542396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 154386d161a7SShri Abhyankar if (!rank) { 15449d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 154586d161a7SShri Abhyankar 154686d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 154786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 154886d161a7SShri Abhyankar 154986d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 155086d161a7SShri Abhyankar vals_ptr = vals; 155186d161a7SShri Abhyankar for (i=0; i<m; i++) { 155286d161a7SShri Abhyankar for (j=0; j<N; j++) { 155386d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 155486d161a7SShri Abhyankar } 155586d161a7SShri Abhyankar } 155686d161a7SShri Abhyankar 155786d161a7SShri Abhyankar /* read in other processors and ship out */ 155886d161a7SShri Abhyankar for (i=1; i<size; i++) { 155986d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 156086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1561a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 156286d161a7SShri Abhyankar } 156386d161a7SShri Abhyankar } else { 156486d161a7SShri Abhyankar /* receive numeric values */ 1565785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 156686d161a7SShri Abhyankar 156786d161a7SShri Abhyankar /* receive message of values*/ 1568a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 156986d161a7SShri Abhyankar 157086d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 157186d161a7SShri Abhyankar vals_ptr = vals; 157286d161a7SShri Abhyankar for (i=0; i<m; i++) { 157386d161a7SShri Abhyankar for (j=0; j<N; j++) { 157486d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 157586d161a7SShri Abhyankar } 157686d161a7SShri Abhyankar } 157786d161a7SShri Abhyankar } 15788c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 157986d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 158086d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158186d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158286d161a7SShri Abhyankar PetscFunctionReturn(0); 158386d161a7SShri Abhyankar } 158486d161a7SShri Abhyankar 158586d161a7SShri Abhyankar #undef __FUNCT__ 15865bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1587112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 158886d161a7SShri Abhyankar { 1589dfdea288SBarry Smith Mat_MPIDense *a; 159086d161a7SShri Abhyankar PetscScalar *vals,*svals; 1591ce94432eSBarry Smith MPI_Comm comm; 159286d161a7SShri Abhyankar MPI_Status status; 159349467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 159486d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 159549467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 15969d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 159786d161a7SShri Abhyankar int fd; 159886d161a7SShri Abhyankar PetscErrorCode ierr; 159986d161a7SShri Abhyankar 160086d161a7SShri Abhyankar PetscFunctionBegin; 1601c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1602c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1603ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 160486d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 160586d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 160686d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16075872f025SBarry Smith if (!rank) { 160886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 160986d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 161086d161a7SShri Abhyankar } 161186d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 161286d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 161386d161a7SShri Abhyankar 161486d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16159d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16169d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 161786d161a7SShri Abhyankar 16189d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 16199d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 162086d161a7SShri Abhyankar 162186d161a7SShri Abhyankar /* 162286d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 162386d161a7SShri Abhyankar */ 162486d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16259d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 162686d161a7SShri Abhyankar PetscFunctionReturn(0); 162786d161a7SShri Abhyankar } 162886d161a7SShri Abhyankar 162986d161a7SShri Abhyankar /* determine ownership of all rows */ 16302205254eSKarl Rupp if (newmat->rmap->n < 0) { 16312205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16322205254eSKarl Rupp } else { 16332205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16342205254eSKarl Rupp } 163549467e7dSBarry Smith if (newmat->cmap->n < 0) { 163649467e7dSBarry Smith n = PETSC_DECIDE; 163749467e7dSBarry Smith } else { 163849467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 163949467e7dSBarry Smith } 164049467e7dSBarry Smith 1641854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 164286d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 164386d161a7SShri Abhyankar rowners[0] = 0; 164486d161a7SShri Abhyankar for (i=2; i<=size; i++) { 164586d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 164686d161a7SShri Abhyankar } 164786d161a7SShri Abhyankar rstart = rowners[rank]; 164886d161a7SShri Abhyankar rend = rowners[rank+1]; 164986d161a7SShri Abhyankar 165086d161a7SShri Abhyankar /* distribute row lengths to all processors */ 165149467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 165286d161a7SShri Abhyankar if (!rank) { 1653785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 165486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1655785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 165686d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 165786d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 165886d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 165986d161a7SShri Abhyankar } else { 166086d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 166186d161a7SShri Abhyankar } 166286d161a7SShri Abhyankar 166386d161a7SShri Abhyankar if (!rank) { 166486d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1665785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 166686d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 166786d161a7SShri Abhyankar for (i=0; i<size; i++) { 166886d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 166986d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 167086d161a7SShri Abhyankar } 167186d161a7SShri Abhyankar } 167286d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 167386d161a7SShri Abhyankar 167486d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 167586d161a7SShri Abhyankar maxnz = 0; 167686d161a7SShri Abhyankar for (i=0; i<size; i++) { 167786d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 167886d161a7SShri Abhyankar } 1679785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 168086d161a7SShri Abhyankar 168186d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 168286d161a7SShri Abhyankar nz = procsnz[0]; 1683785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 168486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 168586d161a7SShri Abhyankar 168686d161a7SShri Abhyankar /* read in every one elses and ship off */ 168786d161a7SShri Abhyankar for (i=1; i<size; i++) { 168886d161a7SShri Abhyankar nz = procsnz[i]; 168986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 169086d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 169186d161a7SShri Abhyankar } 169286d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 169386d161a7SShri Abhyankar } else { 169486d161a7SShri Abhyankar /* determine buffer space needed for message */ 169586d161a7SShri Abhyankar nz = 0; 169686d161a7SShri Abhyankar for (i=0; i<m; i++) { 169786d161a7SShri Abhyankar nz += ourlens[i]; 169886d161a7SShri Abhyankar } 1699854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 170086d161a7SShri Abhyankar 170186d161a7SShri Abhyankar /* receive message of column indices*/ 170286d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 170386d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 170486d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 170586d161a7SShri Abhyankar } 170686d161a7SShri Abhyankar 170749467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1708dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17092e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17100298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1711dfdea288SBarry Smith } 171286d161a7SShri Abhyankar 171386d161a7SShri Abhyankar if (!rank) { 1714785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 171586d161a7SShri Abhyankar 171686d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 171786d161a7SShri Abhyankar nz = procsnz[0]; 171886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 171986d161a7SShri Abhyankar 172086d161a7SShri Abhyankar /* insert into matrix */ 172186d161a7SShri Abhyankar jj = rstart; 172286d161a7SShri Abhyankar smycols = mycols; 172386d161a7SShri Abhyankar svals = vals; 172486d161a7SShri Abhyankar for (i=0; i<m; i++) { 172586d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 172686d161a7SShri Abhyankar smycols += ourlens[i]; 172786d161a7SShri Abhyankar svals += ourlens[i]; 172886d161a7SShri Abhyankar jj++; 172986d161a7SShri Abhyankar } 173086d161a7SShri Abhyankar 173186d161a7SShri Abhyankar /* read in other processors and ship out */ 173286d161a7SShri Abhyankar for (i=1; i<size; i++) { 173386d161a7SShri Abhyankar nz = procsnz[i]; 173486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173586d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 173686d161a7SShri Abhyankar } 173786d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 173886d161a7SShri Abhyankar } else { 173986d161a7SShri Abhyankar /* receive numeric values */ 1740854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 174186d161a7SShri Abhyankar 174286d161a7SShri Abhyankar /* receive message of values*/ 174386d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 174486d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 174586d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 174686d161a7SShri Abhyankar 174786d161a7SShri Abhyankar /* insert into matrix */ 174886d161a7SShri Abhyankar jj = rstart; 174986d161a7SShri Abhyankar smycols = mycols; 175086d161a7SShri Abhyankar svals = vals; 175186d161a7SShri Abhyankar for (i=0; i<m; i++) { 175286d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 175386d161a7SShri Abhyankar smycols += ourlens[i]; 175486d161a7SShri Abhyankar svals += ourlens[i]; 175586d161a7SShri Abhyankar jj++; 175686d161a7SShri Abhyankar } 175786d161a7SShri Abhyankar } 175849467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 175986d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 176086d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 176186d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 176286d161a7SShri Abhyankar 176386d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176486d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176586d161a7SShri Abhyankar PetscFunctionReturn(0); 176686d161a7SShri Abhyankar } 176786d161a7SShri Abhyankar 176886d161a7SShri Abhyankar #undef __FUNCT__ 17696e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1770ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17716e4ee0c6SHong Zhang { 17726e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17736e4ee0c6SHong Zhang Mat a,b; 1774ace3abfcSBarry Smith PetscBool flg; 17756e4ee0c6SHong Zhang PetscErrorCode ierr; 177690ace30eSBarry Smith 17776e4ee0c6SHong Zhang PetscFunctionBegin; 17786e4ee0c6SHong Zhang a = matA->A; 17796e4ee0c6SHong Zhang b = matB->A; 17806e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1781b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17826e4ee0c6SHong Zhang PetscFunctionReturn(0); 17836e4ee0c6SHong Zhang } 178490ace30eSBarry Smith 1785cb20be35SHong Zhang #undef __FUNCT__ 1786baa3c1c6SHong Zhang #define __FUNCT__ "MatDestroy_MatTransMatMult_MPIDense_MPIDense" 1787baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1788baa3c1c6SHong Zhang { 1789baa3c1c6SHong Zhang PetscErrorCode ierr; 1790baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1791baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1792baa3c1c6SHong Zhang 1793baa3c1c6SHong Zhang PetscFunctionBegin; 1794c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1795baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1796baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1797baa3c1c6SHong Zhang PetscFunctionReturn(0); 1798baa3c1c6SHong Zhang } 1799baa3c1c6SHong Zhang 1800baa3c1c6SHong Zhang #undef __FUNCT__ 1801cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultNumeric_MPIDense_MPIDense" 1802cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1803cb20be35SHong Zhang { 1804baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1805660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1806baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1807cb20be35SHong Zhang PetscErrorCode ierr; 1808cb20be35SHong Zhang MPI_Comm comm; 1809d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1810c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1811d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1812660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1813adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1814e68c0b26SHong Zhang const PetscInt *ranges; 1815cb20be35SHong Zhang 1816cb20be35SHong Zhang PetscFunctionBegin; 1817cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1818cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1819cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1820e68c0b26SHong Zhang 1821c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1822660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1823660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1824660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1825adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1826adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1827cb20be35SHong Zhang 1828cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1829c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1830cb20be35SHong Zhang 1831660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1832cb20be35SHong Zhang k = 0; 1833cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1834baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1835c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1836cb20be35SHong Zhang } 1837cb20be35SHong Zhang } 1838c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1839660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 18403462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1841660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1842cb20be35SHong Zhang PetscFunctionReturn(0); 1843cb20be35SHong Zhang } 1844cb20be35SHong Zhang 1845cb20be35SHong Zhang #undef __FUNCT__ 1846cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultSymbolic_MPIDense_MPIDense" 1847cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1848cb20be35SHong Zhang { 1849cb20be35SHong Zhang PetscErrorCode ierr; 1850baa3c1c6SHong Zhang Mat Cdense; 1851cb20be35SHong Zhang MPI_Comm comm; 1852baa3c1c6SHong Zhang PetscMPIInt size; 1853660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1854baa3c1c6SHong Zhang Mat_MPIDense *c; 1855baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1856cb20be35SHong Zhang 1857cb20be35SHong Zhang PetscFunctionBegin; 1858baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1859cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1860cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1861cb20be35SHong Zhang } 1862cb20be35SHong Zhang 1863baa3c1c6SHong Zhang /* create matrix product Cdense */ 1864baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1865660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1866baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1867baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1868baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1869baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1870baa3c1c6SHong Zhang *C = Cdense; 1871baa3c1c6SHong Zhang 1872baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1873baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1874baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1875660d5466SHong Zhang cM = Cdense->rmap->N; 1876c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1877baa3c1c6SHong Zhang 1878baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1879baa3c1c6SHong Zhang c->atbdense = atb; 1880baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1881baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1882cb20be35SHong Zhang PetscFunctionReturn(0); 1883cb20be35SHong Zhang } 1884cb20be35SHong Zhang 1885cb20be35SHong Zhang #undef __FUNCT__ 1886cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMult_MPIDense_MPIDense" 1887cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1888cb20be35SHong Zhang { 1889cb20be35SHong Zhang PetscErrorCode ierr; 1890cb20be35SHong Zhang 1891cb20be35SHong Zhang PetscFunctionBegin; 1892cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1893cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1894cb20be35SHong Zhang } 1895cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1896cb20be35SHong Zhang PetscFunctionReturn(0); 1897cb20be35SHong Zhang } 1898320f2790SHong Zhang 1899320f2790SHong Zhang #undef __FUNCT__ 1900320f2790SHong Zhang #define __FUNCT__ "MatDestroy_MatMatMult_MPIDense_MPIDense" 1901320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1902320f2790SHong Zhang { 1903320f2790SHong Zhang PetscErrorCode ierr; 1904320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1905320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1906320f2790SHong Zhang 1907320f2790SHong Zhang PetscFunctionBegin; 1908320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1909320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1910320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1911320f2790SHong Zhang 1912320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1913320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1914320f2790SHong Zhang PetscFunctionReturn(0); 1915320f2790SHong Zhang } 1916320f2790SHong Zhang 19175242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1918320f2790SHong Zhang #undef __FUNCT__ 1919320f2790SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 1920320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1921320f2790SHong Zhang { 1922320f2790SHong Zhang PetscErrorCode ierr; 1923320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1924320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1925320f2790SHong Zhang 1926320f2790SHong Zhang PetscFunctionBegin; 1927de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1928de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1929320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1930de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1931320f2790SHong Zhang PetscFunctionReturn(0); 1932320f2790SHong Zhang } 1933320f2790SHong Zhang 1934320f2790SHong Zhang #undef __FUNCT__ 1935320f2790SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 1936320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1937320f2790SHong Zhang { 1938320f2790SHong Zhang PetscErrorCode ierr; 1939320f2790SHong Zhang Mat Ae,Be,Ce; 1940320f2790SHong Zhang Mat_MPIDense *c; 1941320f2790SHong Zhang Mat_MatMultDense *ab; 1942320f2790SHong Zhang 1943320f2790SHong Zhang PetscFunctionBegin; 1944320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1945378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1946320f2790SHong Zhang } 1947320f2790SHong Zhang 1948320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 1949320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 1950320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 1951320f2790SHong Zhang 1952320f2790SHong Zhang /* Ce = Ae*Be */ 1953320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 1954320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 1955320f2790SHong Zhang 1956320f2790SHong Zhang /* convert Ce to C */ 1957320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 1958320f2790SHong Zhang 1959320f2790SHong Zhang /* create data structure for reuse Cdense */ 1960320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 1961320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 1962320f2790SHong Zhang c->abdense = ab; 1963320f2790SHong Zhang 1964320f2790SHong Zhang ab->Ae = Ae; 1965320f2790SHong Zhang ab->Be = Be; 1966320f2790SHong Zhang ab->Ce = Ce; 1967320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 1968320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19699775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 1970320f2790SHong Zhang PetscFunctionReturn(0); 1971320f2790SHong Zhang } 1972320f2790SHong Zhang 1973320f2790SHong Zhang #undef __FUNCT__ 1974320f2790SHong Zhang #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 1975150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1976320f2790SHong Zhang { 1977320f2790SHong Zhang PetscErrorCode ierr; 1978320f2790SHong Zhang 1979320f2790SHong Zhang PetscFunctionBegin; 1980320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 198157299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1982320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 198357299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1984320f2790SHong Zhang } else { 198557299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1986320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 198757299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1988320f2790SHong Zhang } 1989320f2790SHong Zhang PetscFunctionReturn(0); 1990320f2790SHong Zhang } 19915242a7b1SHong Zhang #endif 1992