1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 704fea9ffSBarry Smith 889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg; 11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d; 12eae6fb2eSBarry Smith #endif 138965ea79SLois Curfman McInnes 14ba8c8a56SBarry Smith #undef __FUNCT__ 15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 16ab92ecdeSBarry Smith /*@ 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 19ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Input Parameter: 22ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 23ab92ecdeSBarry Smith 24ab92ecdeSBarry Smith Output Parameter: 25ab92ecdeSBarry Smith . B - the inner matrix 26ab92ecdeSBarry Smith 278e6c10adSSatish Balay Level: intermediate 288e6c10adSSatish Balay 29ab92ecdeSBarry Smith @*/ 30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 31ab92ecdeSBarry Smith { 32ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 33ab92ecdeSBarry Smith PetscErrorCode ierr; 34ab92ecdeSBarry Smith PetscTruth flg; 35ab92ecdeSBarry Smith 36ab92ecdeSBarry Smith PetscFunctionBegin; 37ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 38ab92ecdeSBarry Smith if (flg) { 39ab92ecdeSBarry Smith *B = mat->A; 40ab92ecdeSBarry Smith } else { 41ab92ecdeSBarry Smith *B = A; 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith PetscFunctionReturn(0); 44ab92ecdeSBarry Smith } 45ab92ecdeSBarry Smith 46ab92ecdeSBarry Smith #undef __FUNCT__ 47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 49ba8c8a56SBarry Smith { 50ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 51ba8c8a56SBarry Smith PetscErrorCode ierr; 52899cda47SBarry Smith PetscInt lrow,rstart = A->rmap.rstart,rend = A->rmap.rend; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 56ba8c8a56SBarry Smith lrow = row - rstart; 57ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith #undef __FUNCT__ 62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 64ba8c8a56SBarry Smith { 65ba8c8a56SBarry Smith PetscErrorCode ierr; 66ba8c8a56SBarry Smith 67ba8c8a56SBarry Smith PetscFunctionBegin; 68ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 69ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 70ba8c8a56SBarry Smith PetscFunctionReturn(0); 71ba8c8a56SBarry Smith } 72ba8c8a56SBarry Smith 730de54da6SSatish Balay EXTERN_C_BEGIN 744a2ae208SSatish Balay #undef __FUNCT__ 754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80899cda47SBarry Smith PetscInt m = A->rmap.n,rstart = A->rmap.rstart; 8187828ca2SBarry Smith PetscScalar *array; 820de54da6SSatish Balay MPI_Comm comm; 830de54da6SSatish Balay 840de54da6SSatish Balay PetscFunctionBegin; 85899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 860de54da6SSatish Balay 870de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 880de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 890de54da6SSatish Balay 900de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 910de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 92f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 93f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 947adad957SLisandro Dalcin ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 955c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 960de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 970de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 990de54da6SSatish Balay 1000de54da6SSatish Balay *iscopy = PETSC_TRUE; 1010de54da6SSatish Balay PetscFunctionReturn(0); 1020de54da6SSatish Balay } 1030de54da6SSatish Balay EXTERN_C_END 1040de54da6SSatish Balay 1054a2ae208SSatish Balay #undef __FUNCT__ 1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1088965ea79SLois Curfman McInnes { 10939b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110dfbe8321SBarry Smith PetscErrorCode ierr; 111899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 112273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1138965ea79SLois Curfman McInnes 1143a40ed3dSBarry Smith PetscFunctionBegin; 1158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1165ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 117899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1188965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1198965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12039b7565bSBarry Smith if (roworiented) { 12139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1223a40ed3dSBarry Smith } else { 1238965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1245ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 125899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12739b7565bSBarry Smith } 1288965ea79SLois Curfman McInnes } 1293a40ed3dSBarry Smith } else { 1303782ba37SSatish Balay if (!A->donotstash) { 13139b7565bSBarry Smith if (roworiented) { 1328798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 133d36fbae8SSatish Balay } else { 1348798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 13539b7565bSBarry Smith } 136b49de8d1SLois Curfman McInnes } 137b49de8d1SLois Curfman McInnes } 1383782ba37SSatish Balay } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 1424a2ae208SSatish Balay #undef __FUNCT__ 1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 145b49de8d1SLois Curfman McInnes { 146b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 147dfbe8321SBarry Smith PetscErrorCode ierr; 148899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 149b49de8d1SLois Curfman McInnes 1503a40ed3dSBarry Smith PetscFunctionBegin; 151b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 15297e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 153899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 154b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 155b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 156b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15797e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 158899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) { 15929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 160a8c6a408SBarry Smith } 161b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 162b49de8d1SLois Curfman McInnes } 163a8c6a408SBarry Smith } else { 16429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1658965ea79SLois Curfman McInnes } 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 173ff14e315SSatish Balay { 174ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 175dfbe8321SBarry Smith PetscErrorCode ierr; 176ff14e315SSatish Balay 1773a40ed3dSBarry Smith PetscFunctionBegin; 178ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1793a40ed3dSBarry Smith PetscFunctionReturn(0); 180ff14e315SSatish Balay } 181ff14e315SSatish Balay 1824a2ae208SSatish Balay #undef __FUNCT__ 1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 185ca3fa75bSLois Curfman McInnes { 186ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 187ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1886849ba73SBarry Smith PetscErrorCode ierr; 18913f74950SBarry Smith PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 19087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 191ca3fa75bSLois Curfman McInnes Mat newmat; 192ca3fa75bSLois Curfman McInnes 193ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 194ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 195ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 196b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 197b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2007eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2017eba5e9cSLois Curfman McInnes original matrix! */ 202ca3fa75bSLois Curfman McInnes 203ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2047eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 205ca3fa75bSLois Curfman McInnes 206ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 207ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 20829bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2097eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 210ca3fa75bSLois Curfman McInnes newmat = *B; 211ca3fa75bSLois Curfman McInnes } else { 212ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2137adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 214f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 2157adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 216878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 217ca3fa75bSLois Curfman McInnes } 218ca3fa75bSLois Curfman McInnes 219ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 220ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 221ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 224ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 225ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2267eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 227ca3fa75bSLois Curfman McInnes } 228ca3fa75bSLois Curfman McInnes } 229ca3fa75bSLois Curfman McInnes 230ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 231ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233ca3fa75bSLois Curfman McInnes 234ca3fa75bSLois Curfman McInnes /* Free work space */ 235ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 236ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 237ca3fa75bSLois Curfman McInnes *B = newmat; 238ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes 2414a2ae208SSatish Balay #undef __FUNCT__ 2424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 243dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 244ff14e315SSatish Balay { 2453a40ed3dSBarry Smith PetscFunctionBegin; 2463a40ed3dSBarry Smith PetscFunctionReturn(0); 247ff14e315SSatish Balay } 248ff14e315SSatish Balay 2494a2ae208SSatish Balay #undef __FUNCT__ 2504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 251dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2528965ea79SLois Curfman McInnes { 25339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2547adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mat)->comm; 255dfbe8321SBarry Smith PetscErrorCode ierr; 25613f74950SBarry Smith PetscInt nstash,reallocs; 2578965ea79SLois Curfman McInnes InsertMode addv; 2588965ea79SLois Curfman McInnes 2593a40ed3dSBarry Smith PetscFunctionBegin; 2608965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 261ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2627056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 26329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2648965ea79SLois Curfman McInnes } 265e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2668965ea79SLois Curfman McInnes 2671e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 2688798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 269ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2703a40ed3dSBarry Smith PetscFunctionReturn(0); 2718965ea79SLois Curfman McInnes } 2728965ea79SLois Curfman McInnes 2734a2ae208SSatish Balay #undef __FUNCT__ 2744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 275dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2768965ea79SLois Curfman McInnes { 27739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2786849ba73SBarry Smith PetscErrorCode ierr; 27913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 28013f74950SBarry Smith PetscMPIInt n; 28187828ca2SBarry Smith PetscScalar *val; 282e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2838965ea79SLois Curfman McInnes 2843a40ed3dSBarry Smith PetscFunctionBegin; 2858965ea79SLois Curfman McInnes /* wait on receives */ 2867ef1d9bdSSatish Balay while (1) { 2878798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2887ef1d9bdSSatish Balay if (!flg) break; 2898965ea79SLois Curfman McInnes 2907ef1d9bdSSatish Balay for (i=0; i<n;) { 2917ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2927ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2937ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2947ef1d9bdSSatish Balay else ncols = n-i; 2957ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2967ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2977ef1d9bdSSatish Balay i = j; 2988965ea79SLois Curfman McInnes } 2997ef1d9bdSSatish Balay } 3008798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3018965ea79SLois Curfman McInnes 30239ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30339ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3048965ea79SLois Curfman McInnes 3056d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30639ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3078965ea79SLois Curfman McInnes } 3083a40ed3dSBarry Smith PetscFunctionReturn(0); 3098965ea79SLois Curfman McInnes } 3108965ea79SLois Curfman McInnes 3114a2ae208SSatish Balay #undef __FUNCT__ 3124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 313dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3148965ea79SLois Curfman McInnes { 315dfbe8321SBarry Smith PetscErrorCode ierr; 31639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3173a40ed3dSBarry Smith 3183a40ed3dSBarry Smith PetscFunctionBegin; 3193a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3203a40ed3dSBarry Smith PetscFunctionReturn(0); 3218965ea79SLois Curfman McInnes } 3228965ea79SLois Curfman McInnes 3238965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3248965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3258965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3263501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3278965ea79SLois Curfman McInnes routine. 3288965ea79SLois Curfman McInnes */ 3294a2ae208SSatish Balay #undef __FUNCT__ 3304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 331f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3328965ea79SLois Curfman McInnes { 33339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3346849ba73SBarry Smith PetscErrorCode ierr; 335899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 33613f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 33713f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3387adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33913f74950SBarry Smith PetscInt *lens,*lrows,*values; 34013f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3417adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 3428965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3438965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 34435d8aa7fSBarry Smith PetscTruth found; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 3478965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 34813f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 34913f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 35013f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3518965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3528965ea79SLois Curfman McInnes idx = rows[i]; 35335d8aa7fSBarry Smith found = PETSC_FALSE; 3548965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3558965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 356c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3578965ea79SLois Curfman McInnes } 3588965ea79SLois Curfman McInnes } 35929bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3608965ea79SLois Curfman McInnes } 361c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3628965ea79SLois Curfman McInnes 3638965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 364c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* post receives: */ 36713f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 368b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37013f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3718965ea79SLois Curfman McInnes } 3728965ea79SLois Curfman McInnes 3738965ea79SLois Curfman McInnes /* do sends: 3748965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3758965ea79SLois Curfman McInnes the ith processor 3768965ea79SLois Curfman McInnes */ 37713f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 378b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 37913f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 3808965ea79SLois Curfman McInnes starts[0] = 0; 381c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3828965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3838965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3848965ea79SLois Curfman McInnes } 3858965ea79SLois Curfman McInnes 3868965ea79SLois Curfman McInnes starts[0] = 0; 387c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3888965ea79SLois Curfman McInnes count = 0; 3898965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 390c1dc657dSBarry Smith if (nprocs[2*i+1]) { 39113f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3928965ea79SLois Curfman McInnes } 3938965ea79SLois Curfman McInnes } 394606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3958965ea79SLois Curfman McInnes 3968965ea79SLois Curfman McInnes base = owners[rank]; 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* wait on receives */ 39913f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 4008965ea79SLois Curfman McInnes source = lens + nrecvs; 4018965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4028965ea79SLois Curfman McInnes while (count) { 403ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4048965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40513f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4078965ea79SLois Curfman McInnes lens[imdex] = n; 4088965ea79SLois Curfman McInnes slen += n; 4098965ea79SLois Curfman McInnes count--; 4108965ea79SLois Curfman McInnes } 411606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes 4138965ea79SLois Curfman McInnes /* move the data into the send scatter */ 41413f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes count = 0; 4168965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4178965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4188965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4198965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4208965ea79SLois Curfman McInnes } 4218965ea79SLois Curfman McInnes } 422606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 423606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 424606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 425606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4268965ea79SLois Curfman McInnes 4278965ea79SLois Curfman McInnes /* actually zap the local rows */ 428f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 429606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes 4318965ea79SLois Curfman McInnes /* wait on sends */ 4328965ea79SLois Curfman McInnes if (nsends) { 433b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 434ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 435606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4368965ea79SLois Curfman McInnes } 437606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 438606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4398965ea79SLois Curfman McInnes 4403a40ed3dSBarry Smith PetscFunctionReturn(0); 4418965ea79SLois Curfman McInnes } 4428965ea79SLois Curfman McInnes 4434a2ae208SSatish Balay #undef __FUNCT__ 4444a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4468965ea79SLois Curfman McInnes { 44739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449c456f294SBarry Smith 4503a40ed3dSBarry Smith PetscFunctionBegin; 451ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 452ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 45344cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 4558965ea79SLois Curfman McInnes } 4568965ea79SLois Curfman McInnes 4574a2ae208SSatish Balay #undef __FUNCT__ 4584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 459dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4608965ea79SLois Curfman McInnes { 46139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 462dfbe8321SBarry Smith PetscErrorCode ierr; 463c456f294SBarry Smith 4643a40ed3dSBarry Smith PetscFunctionBegin; 465ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 466ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 46744cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4683a40ed3dSBarry Smith PetscFunctionReturn(0); 4698965ea79SLois Curfman McInnes } 4708965ea79SLois Curfman McInnes 4714a2ae208SSatish Balay #undef __FUNCT__ 4724a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 473dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 474096963f5SLois Curfman McInnes { 475096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 476dfbe8321SBarry Smith PetscErrorCode ierr; 47787828ca2SBarry Smith PetscScalar zero = 0.0; 478096963f5SLois Curfman McInnes 4793a40ed3dSBarry Smith PetscFunctionBegin; 4802dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 4817c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 482ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 483ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 485096963f5SLois Curfman McInnes } 486096963f5SLois Curfman McInnes 4874a2ae208SSatish Balay #undef __FUNCT__ 4884a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 489dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 490096963f5SLois Curfman McInnes { 491096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 492dfbe8321SBarry Smith PetscErrorCode ierr; 493096963f5SLois Curfman McInnes 4943a40ed3dSBarry Smith PetscFunctionBegin; 4953501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4967c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 497ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 498ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4993a40ed3dSBarry Smith PetscFunctionReturn(0); 500096963f5SLois Curfman McInnes } 501096963f5SLois Curfman McInnes 5024a2ae208SSatish Balay #undef __FUNCT__ 5034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5058965ea79SLois Curfman McInnes { 50639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 507096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 508dfbe8321SBarry Smith PetscErrorCode ierr; 509899cda47SBarry Smith PetscInt len,i,n,m = A->rmap.n,radd; 51087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 511ed3cc1f0SBarry Smith 5123a40ed3dSBarry Smith PetscFunctionBegin; 5132dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5141ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 515096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 516899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 517899cda47SBarry Smith len = PetscMin(a->A->rmap.n,a->A->cmap.n); 518899cda47SBarry Smith radd = A->rmap.rstart*m; 51944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 520096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 521096963f5SLois Curfman McInnes } 5221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5233a40ed3dSBarry Smith PetscFunctionReturn(0); 5248965ea79SLois Curfman McInnes } 5258965ea79SLois Curfman McInnes 5264a2ae208SSatish Balay #undef __FUNCT__ 5274a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 528dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5298965ea79SLois Curfman McInnes { 5303501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 531dfbe8321SBarry Smith PetscErrorCode ierr; 53201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 53301b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 53401b82886SBarry Smith #endif 535ed3cc1f0SBarry Smith 5363a40ed3dSBarry Smith PetscFunctionBegin; 53794d884c6SBarry Smith 538aa482453SBarry Smith #if defined(PETSC_USE_LOG) 539899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N); 5408965ea79SLois Curfman McInnes #endif 5418798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5423501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 54305b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 54405b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 54501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 5462fbe02b9SBarry Smith if (lu) { 54762b4c0b3SBarry Smith ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 54862b4c0b3SBarry Smith ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 54962b4c0b3SBarry Smith ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 55009d27a7eSBarry Smith 5512fbe02b9SBarry Smith if (lu->is_pla) { 55201b82886SBarry Smith ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 55301b82886SBarry Smith ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 55401b82886SBarry Smith ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 555622d7880SLois Curfman McInnes } 5562fbe02b9SBarry Smith } 55701b82886SBarry Smith #endif 55801b82886SBarry Smith 559606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 560dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 561901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 562901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5634ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5644ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5654ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5663a40ed3dSBarry Smith PetscFunctionReturn(0); 5678965ea79SLois Curfman McInnes } 56839ddd567SLois Curfman McInnes 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5728965ea79SLois Curfman McInnes { 57339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575aa05aa95SBarry Smith PetscViewerFormat format; 576aa05aa95SBarry Smith int fd; 577aa05aa95SBarry Smith PetscInt header[4],mmax,N = mat->cmap.N,i,j,m,k; 578aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 579578230a0SSatish Balay PetscScalar *work,*v,*vv; 580aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 581aa05aa95SBarry Smith MPI_Status status; 5827056b6fcSBarry Smith 5833a40ed3dSBarry Smith PetscFunctionBegin; 58439ddd567SLois Curfman McInnes if (mdn->size == 1) { 58539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 586aa05aa95SBarry Smith } else { 587aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 5887adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 5897adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 590aa05aa95SBarry Smith 591aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 592aa05aa95SBarry Smith if (format == PETSC_VIEWER_BINARY_NATIVE) { 593aa05aa95SBarry Smith 594aa05aa95SBarry Smith if (!rank) { 595aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 596aa05aa95SBarry Smith header[0] = MAT_FILE_COOKIE; 597aa05aa95SBarry Smith header[1] = mat->rmap.N; 598aa05aa95SBarry Smith header[2] = N; 599aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 600aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 601aa05aa95SBarry Smith 602aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 603aa05aa95SBarry Smith mmax = mat->rmap.n; 604aa05aa95SBarry Smith for (i=1; i<size; i++) { 605aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 6068965ea79SLois Curfman McInnes } 607aa05aa95SBarry Smith ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 608aa05aa95SBarry Smith 609aa05aa95SBarry Smith /* write out local array, by rows */ 610aa05aa95SBarry Smith m = mat->rmap.n; 611aa05aa95SBarry Smith v = a->v; 612aa05aa95SBarry Smith for (j=0; j<N; j++) { 613aa05aa95SBarry Smith for (i=0; i<m; i++) { 614578230a0SSatish Balay work[j + i*N] = *v++; 615aa05aa95SBarry Smith } 616aa05aa95SBarry Smith } 617aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 618aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 619aa05aa95SBarry Smith mmax = 0; 620aa05aa95SBarry Smith for (i=1; i<size; i++) { 621aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 622aa05aa95SBarry Smith } 623578230a0SSatish Balay ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 624578230a0SSatish Balay v = vv; 625aa05aa95SBarry Smith for (k=1; k<size; k++) { 626aa05aa95SBarry Smith m = mat->rmap.range[k+1] - mat->rmap.range[k]; 6277adad957SLisandro Dalcin ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith for (j=0; j<N; j++) { 630aa05aa95SBarry Smith for (i=0; i<m; i++) { 631578230a0SSatish Balay work[j + i*N] = *v++; 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith } 634aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 635aa05aa95SBarry Smith } 636aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 637578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 638aa05aa95SBarry Smith } else { 6397adad957SLisandro Dalcin ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 640aa05aa95SBarry Smith } 641aa05aa95SBarry Smith } 642aa05aa95SBarry Smith } 6433a40ed3dSBarry Smith PetscFunctionReturn(0); 6448965ea79SLois Curfman McInnes } 6458965ea79SLois Curfman McInnes 6464a2ae208SSatish Balay #undef __FUNCT__ 6474a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6486849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6498965ea79SLois Curfman McInnes { 65039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 651dfbe8321SBarry Smith PetscErrorCode ierr; 65232dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 653b0a32e0cSBarry Smith PetscViewerType vtype; 65432077d6dSBarry Smith PetscTruth iascii,isdraw; 655b0a32e0cSBarry Smith PetscViewer sviewer; 656f3ef73ceSBarry Smith PetscViewerFormat format; 65701b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 65801b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 65901b82886SBarry Smith #endif 6608965ea79SLois Curfman McInnes 6613a40ed3dSBarry Smith PetscFunctionBegin; 66232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 663fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 66432077d6dSBarry Smith if (iascii) { 665b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 666b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 667456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6684e220ebcSLois Curfman McInnes MatInfo info; 669888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 670899cda47SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n, 67177431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 672b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6733501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 67401b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 67501b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 67604fea9ffSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr); 67701b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 678eae6fb2eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr); 679eae6fb2eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr); 68001b82886SBarry Smith #endif 6813a40ed3dSBarry Smith PetscFunctionReturn(0); 682fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6833a40ed3dSBarry Smith PetscFunctionReturn(0); 6848965ea79SLois Curfman McInnes } 685f1af5d2fSBarry Smith } else if (isdraw) { 686b0a32e0cSBarry Smith PetscDraw draw; 687f1af5d2fSBarry Smith PetscTruth isnull; 688f1af5d2fSBarry Smith 689b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 690b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 691f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 692f1af5d2fSBarry Smith } 69377ed5343SBarry Smith 6948965ea79SLois Curfman McInnes if (size == 1) { 69539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6963a40ed3dSBarry Smith } else { 6978965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6988965ea79SLois Curfman McInnes Mat A; 699899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz; 700ba8c8a56SBarry Smith PetscInt *cols; 701ba8c8a56SBarry Smith PetscScalar *vals; 7028965ea79SLois Curfman McInnes 7037adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 7048965ea79SLois Curfman McInnes if (!rank) { 705f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7063a40ed3dSBarry Smith } else { 707f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7088965ea79SLois Curfman McInnes } 7097adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 710878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 711878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 71252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 7138965ea79SLois Curfman McInnes 71439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71539ddd567SLois Curfman McInnes but it's quick for now */ 71651022da4SBarry Smith A->insertmode = INSERT_VALUES; 717899cda47SBarry Smith row = mat->rmap.rstart; m = mdn->A->rmap.n; 7188965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 719ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 720ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 721ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72239ddd567SLois Curfman McInnes row++; 7238965ea79SLois Curfman McInnes } 7248965ea79SLois Curfman McInnes 7256d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7266d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 727b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 728b9b97703SBarry Smith if (!rank) { 7296831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7308965ea79SLois Curfman McInnes } 731b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 732b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7338965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 7348965ea79SLois Curfman McInnes } 7353a40ed3dSBarry Smith PetscFunctionReturn(0); 7368965ea79SLois Curfman McInnes } 7378965ea79SLois Curfman McInnes 7384a2ae208SSatish Balay #undef __FUNCT__ 7394a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 740dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7418965ea79SLois Curfman McInnes { 742dfbe8321SBarry Smith PetscErrorCode ierr; 74332077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 7448965ea79SLois Curfman McInnes 745433994e6SBarry Smith PetscFunctionBegin; 7460f5bd95cSBarry Smith 74732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 748fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 749b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 750fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 7510f5bd95cSBarry Smith 75232077d6dSBarry Smith if (iascii || issocket || isdraw) { 753f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7540f5bd95cSBarry Smith } else if (isbinary) { 7553a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 7565cd90555SBarry Smith } else { 757958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 7588965ea79SLois Curfman McInnes } 7593a40ed3dSBarry Smith PetscFunctionReturn(0); 7608965ea79SLois Curfman McInnes } 7618965ea79SLois Curfman McInnes 7624a2ae208SSatish Balay #undef __FUNCT__ 7634a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 764dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7658965ea79SLois Curfman McInnes { 7663501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7673501a2bdSLois Curfman McInnes Mat mdn = mat->A; 768dfbe8321SBarry Smith PetscErrorCode ierr; 769329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7708965ea79SLois Curfman McInnes 7713a40ed3dSBarry Smith PetscFunctionBegin; 772899cda47SBarry Smith info->rows_global = (double)A->rmap.N; 773899cda47SBarry Smith info->columns_global = (double)A->cmap.N; 774899cda47SBarry Smith info->rows_local = (double)A->rmap.n; 775899cda47SBarry Smith info->columns_local = (double)A->cmap.N; 7764e220ebcSLois Curfman McInnes info->block_size = 1.0; 7774e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7784e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7794e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7808965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7814e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7824e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7834e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7844e220ebcSLois Curfman McInnes info->memory = isend[3]; 7854e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7868965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7877adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 7884e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7894e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7904e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7914e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7924e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7938965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7947adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 7954e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7964e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7974e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7984e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7994e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8008965ea79SLois Curfman McInnes } 8014e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8024e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8034e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8043a40ed3dSBarry Smith PetscFunctionReturn(0); 8058965ea79SLois Curfman McInnes } 8068965ea79SLois Curfman McInnes 8074a2ae208SSatish Balay #undef __FUNCT__ 8084a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 8094e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 8108965ea79SLois Curfman McInnes { 81139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 812dfbe8321SBarry Smith PetscErrorCode ierr; 8138965ea79SLois Curfman McInnes 8143a40ed3dSBarry Smith PetscFunctionBegin; 81512c028f9SKris Buschelman switch (op) { 816512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 81812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8194e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82012c028f9SKris Buschelman break; 82112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8224e0d8c25SBarry Smith a->roworiented = flg; 8234e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82412c028f9SKris Buschelman break; 8254e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 827290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 82812c028f9SKris Buschelman break; 82912c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8304e0d8c25SBarry Smith a->donotstash = flg; 83112c028f9SKris Buschelman break; 83277e54ba9SKris Buschelman case MAT_SYMMETRIC: 83377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8349a4540c5SBarry Smith case MAT_HERMITIAN: 8359a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 836600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 837290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83877e54ba9SKris Buschelman break; 83912c028f9SKris Buschelman default: 840600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8413a40ed3dSBarry Smith } 8423a40ed3dSBarry Smith PetscFunctionReturn(0); 8438965ea79SLois Curfman McInnes } 8448965ea79SLois Curfman McInnes 8458965ea79SLois Curfman McInnes 8464a2ae208SSatish Balay #undef __FUNCT__ 8474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 848dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8495b2fa520SLois Curfman McInnes { 8505b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8515b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85287828ca2SBarry Smith PetscScalar *l,*r,x,*v; 853dfbe8321SBarry Smith PetscErrorCode ierr; 854899cda47SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n; 8555b2fa520SLois Curfman McInnes 8565b2fa520SLois Curfman McInnes PetscFunctionBegin; 85772d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes if (ll) { 85972d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 860175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8611ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8625b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8635b2fa520SLois Curfman McInnes x = l[i]; 8645b2fa520SLois Curfman McInnes v = mat->v + i; 8655b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8665b2fa520SLois Curfman McInnes } 8671ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 868efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8695b2fa520SLois Curfman McInnes } 8705b2fa520SLois Curfman McInnes if (rr) { 871175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 872175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 873ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 874ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8751ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8765b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8775b2fa520SLois Curfman McInnes x = r[i]; 8785b2fa520SLois Curfman McInnes v = mat->v + i*m; 8795b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8805b2fa520SLois Curfman McInnes } 8811ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 882efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8835b2fa520SLois Curfman McInnes } 8845b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8855b2fa520SLois Curfman McInnes } 8865b2fa520SLois Curfman McInnes 8874a2ae208SSatish Balay #undef __FUNCT__ 8884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 889dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 890096963f5SLois Curfman McInnes { 8913501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8923501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 893dfbe8321SBarry Smith PetscErrorCode ierr; 89413f74950SBarry Smith PetscInt i,j; 895329f5518SBarry Smith PetscReal sum = 0.0; 89687828ca2SBarry Smith PetscScalar *v = mat->v; 8973501a2bdSLois Curfman McInnes 8983a40ed3dSBarry Smith PetscFunctionBegin; 8993501a2bdSLois Curfman McInnes if (mdn->size == 1) { 900064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9013501a2bdSLois Curfman McInnes } else { 9023501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 903899cda47SBarry Smith for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) { 904aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 905329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9063501a2bdSLois Curfman McInnes #else 9073501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 9083501a2bdSLois Curfman McInnes #endif 9093501a2bdSLois Curfman McInnes } 9107adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 911064f8208SBarry Smith *nrm = sqrt(*nrm); 912899cda47SBarry Smith ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr); 9133a40ed3dSBarry Smith } else if (type == NORM_1) { 914329f5518SBarry Smith PetscReal *tmp,*tmp2; 915899cda47SBarry Smith ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 916899cda47SBarry Smith tmp2 = tmp + A->cmap.N; 917899cda47SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 918064f8208SBarry Smith *nrm = 0.0; 9193501a2bdSLois Curfman McInnes v = mat->v; 920899cda47SBarry Smith for (j=0; j<mdn->A->cmap.n; j++) { 921899cda47SBarry Smith for (i=0; i<mdn->A->rmap.n; i++) { 92267e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9233501a2bdSLois Curfman McInnes } 9243501a2bdSLois Curfman McInnes } 9257adad957SLisandro Dalcin ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 926899cda47SBarry Smith for (j=0; j<A->cmap.N; j++) { 927064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9283501a2bdSLois Curfman McInnes } 929606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 930899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 9313a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 932329f5518SBarry Smith PetscReal ntemp; 9333501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 9347adad957SLisandro Dalcin ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 9353a40ed3dSBarry Smith } else { 93629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 9373501a2bdSLois Curfman McInnes } 9383501a2bdSLois Curfman McInnes } 9393a40ed3dSBarry Smith PetscFunctionReturn(0); 9403501a2bdSLois Curfman McInnes } 9413501a2bdSLois Curfman McInnes 9424a2ae208SSatish Balay #undef __FUNCT__ 9434a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 944fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9453501a2bdSLois Curfman McInnes { 9463501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9473501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9483501a2bdSLois Curfman McInnes Mat B; 949899cda47SBarry Smith PetscInt M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart; 9506849ba73SBarry Smith PetscErrorCode ierr; 95113f74950SBarry Smith PetscInt j,i; 95287828ca2SBarry Smith PetscScalar *v; 9533501a2bdSLois Curfman McInnes 9543a40ed3dSBarry Smith PetscFunctionBegin; 955e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 956fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 9577adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 958f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr); 9597adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 960878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 961fc4dec0aSBarry Smith } else { 962fc4dec0aSBarry Smith B = *matout; 963fc4dec0aSBarry Smith } 9643501a2bdSLois Curfman McInnes 965899cda47SBarry Smith m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v; 9661acff37aSSatish Balay ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9673501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9681acff37aSSatish Balay for (j=0; j<n; j++) { 9693501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9703501a2bdSLois Curfman McInnes v += m; 9713501a2bdSLois Curfman McInnes } 972606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9736d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9746d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 975815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9763501a2bdSLois Curfman McInnes *matout = B; 9773501a2bdSLois Curfman McInnes } else { 978273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9793501a2bdSLois Curfman McInnes } 9803a40ed3dSBarry Smith PetscFunctionReturn(0); 981096963f5SLois Curfman McInnes } 982096963f5SLois Curfman McInnes 983d9eff348SSatish Balay #include "petscblaslapack.h" 9844a2ae208SSatish Balay #undef __FUNCT__ 9854a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 986f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 98744cd7ae7SLois Curfman McInnes { 98844cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 98944cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 990f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 991efee365bSSatish Balay PetscErrorCode ierr; 9920805154bSBarry Smith PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N); 99344cd7ae7SLois Curfman McInnes 9943a40ed3dSBarry Smith PetscFunctionBegin; 995f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 996efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 9973a40ed3dSBarry Smith PetscFunctionReturn(0); 99844cd7ae7SLois Curfman McInnes } 99944cd7ae7SLois Curfman McInnes 10006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 10018965ea79SLois Curfman McInnes 10024a2ae208SSatish Balay #undef __FUNCT__ 10034a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1004dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1005273d9f13SBarry Smith { 1006dfbe8321SBarry Smith PetscErrorCode ierr; 1007273d9f13SBarry Smith 1008273d9f13SBarry Smith PetscFunctionBegin; 1009273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1010273d9f13SBarry Smith PetscFunctionReturn(0); 1011273d9f13SBarry Smith } 1012273d9f13SBarry Smith 101301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1014eae6fb2eSBarry Smith 1015eae6fb2eSBarry Smith #undef __FUNCT__ 1016eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCreatePlapack" 1017eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCreatePlapack(Mat A) 1018eae6fb2eSBarry Smith { 1019eae6fb2eSBarry Smith Mat_Plapack *lu; 1020eae6fb2eSBarry Smith PetscErrorCode ierr; 1021eae6fb2eSBarry Smith PetscInt M=A->rmap.N; 1022eae6fb2eSBarry Smith MPI_Comm comm=((PetscObject)A)->comm; 1023eae6fb2eSBarry Smith PetscMPIInt size; 1024eae6fb2eSBarry Smith 1025eae6fb2eSBarry Smith PetscFunctionBegin; 10262fbe02b9SBarry Smith if (A->spptr) PetscFunctionReturn(0); 10272fbe02b9SBarry Smith ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr); 10282fbe02b9SBarry Smith A->spptr = (void*)lu; 10292fbe02b9SBarry Smith 1030eae6fb2eSBarry Smith lu = (Mat_Plapack*)(A->spptr); 1031eae6fb2eSBarry Smith 1032eae6fb2eSBarry Smith /* Set default Plapack parameters */ 1033eae6fb2eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1034eae6fb2eSBarry Smith lu->nb = M/size; 1035eae6fb2eSBarry Smith if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 1036eae6fb2eSBarry Smith 1037eae6fb2eSBarry Smith /* Set runtime options */ 1038eae6fb2eSBarry Smith ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1039eae6fb2eSBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1040eae6fb2eSBarry Smith PetscOptionsEnd(); 1041eae6fb2eSBarry Smith 1042eae6fb2eSBarry Smith /* Create object distribution template */ 1043eae6fb2eSBarry Smith lu->templ = NULL; 1044eae6fb2eSBarry Smith ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 1045eae6fb2eSBarry Smith 1046eae6fb2eSBarry Smith /* Set the datatype */ 1047eae6fb2eSBarry Smith #if defined(PETSC_USE_COMPLEX) 1048eae6fb2eSBarry Smith lu->datatype = MPI_DOUBLE_COMPLEX; 1049eae6fb2eSBarry Smith #else 1050eae6fb2eSBarry Smith lu->datatype = MPI_DOUBLE; 1051eae6fb2eSBarry Smith #endif 1052eae6fb2eSBarry Smith 105379b0a62dSBarry Smith ierr = PLA_Matrix_create(lu->datatype,M,A->cmap.N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 105479b0a62dSBarry Smith 1055eae6fb2eSBarry Smith 1056eae6fb2eSBarry Smith lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1057eae6fb2eSBarry Smith PetscFunctionReturn(0); 1058eae6fb2eSBarry Smith } 1059eae6fb2eSBarry Smith 1060eae6fb2eSBarry Smith #undef __FUNCT__ 1061eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack" 1062eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F) 1063eae6fb2eSBarry Smith { 1064eae6fb2eSBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1065eae6fb2eSBarry Smith PetscErrorCode ierr; 106679b0a62dSBarry Smith PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 1067eae6fb2eSBarry Smith PetscScalar *array; 1068eae6fb2eSBarry Smith PetscReal one = 1.0; 1069eae6fb2eSBarry Smith 1070eae6fb2eSBarry Smith PetscFunctionBegin; 10712fbe02b9SBarry Smith /* Copy A into F->lu->A */ 1072eae6fb2eSBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 1073eae6fb2eSBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 1074eae6fb2eSBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 107579b0a62dSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1076eae6fb2eSBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1077eae6fb2eSBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 1078eae6fb2eSBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1079eae6fb2eSBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1080eae6fb2eSBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 1081eae6fb2eSBarry Smith lu->rstart = rstart; 1082eae6fb2eSBarry Smith PetscFunctionReturn(0); 1083eae6fb2eSBarry Smith } 1084eae6fb2eSBarry Smith 108501b82886SBarry Smith #undef __FUNCT__ 10862fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack" 10872fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A) 10882fbe02b9SBarry Smith { 10892fbe02b9SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 10902fbe02b9SBarry Smith PetscErrorCode ierr; 109179b0a62dSBarry Smith PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 10922fbe02b9SBarry Smith PetscScalar *array; 10932fbe02b9SBarry Smith PetscReal one = 1.0; 10942fbe02b9SBarry Smith 10952fbe02b9SBarry Smith PetscFunctionBegin; 10962fbe02b9SBarry Smith /* Copy F into A->lu->A */ 109779b0a62dSBarry Smith ierr = MatZeroEntries(A);CHKERRQ(ierr); 10982fbe02b9SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 10992fbe02b9SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 11002fbe02b9SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 11012fbe02b9SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 11022fbe02b9SBarry Smith ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr); 11032fbe02b9SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 11042fbe02b9SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 11052fbe02b9SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 11062fbe02b9SBarry Smith lu->rstart = rstart; 11072fbe02b9SBarry Smith PetscFunctionReturn(0); 11082fbe02b9SBarry Smith } 11092fbe02b9SBarry Smith 11102fbe02b9SBarry Smith #undef __FUNCT__ 11112fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 11122fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 11132fbe02b9SBarry Smith { 11142fbe02b9SBarry Smith PetscErrorCode ierr; 11152fbe02b9SBarry Smith Mat_Plapack *luA = (Mat_Plapack*)A->spptr; 11162fbe02b9SBarry Smith Mat_Plapack *luB = (Mat_Plapack*)B->spptr; 11172fbe02b9SBarry Smith Mat_Plapack *luC = (Mat_Plapack*)C->spptr; 11182fbe02b9SBarry Smith PLA_Obj alpha = NULL,beta = NULL; 11192fbe02b9SBarry Smith 11202fbe02b9SBarry Smith PetscFunctionBegin; 11212fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr); 11222fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr); 11232fbe02b9SBarry Smith 1124*cb2480eaSBarry Smith ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr); 1125*cb2480eaSBarry Smith ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr); 1126*cb2480eaSBarry Smith 11272fbe02b9SBarry Smith /* do the multiply in PLA */ 112879b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr); 112979b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr); 113079b0a62dSBarry Smith CHKMEMQ; 11312fbe02b9SBarry Smith 1132*cb2480eaSBarry Smith ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A);//CHKERRQ(ierr); 113379b0a62dSBarry Smith CHKMEMQ; 11342fbe02b9SBarry Smith ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr); 11352fbe02b9SBarry Smith ierr = PLA_Obj_free(&beta);CHKERRQ(ierr); 11362fbe02b9SBarry Smith 1137*cb2480eaSBarry Smith ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr); 11382fbe02b9SBarry Smith ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr); 11392fbe02b9SBarry Smith PetscFunctionReturn(0); 11402fbe02b9SBarry Smith } 11412fbe02b9SBarry Smith 11422fbe02b9SBarry Smith #undef __FUNCT__ 11432fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 11442fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 11452fbe02b9SBarry Smith { 11462fbe02b9SBarry Smith PetscErrorCode ierr; 11472fbe02b9SBarry Smith PetscInt m=A->rmap.n,n=B->cmap.n; 11482fbe02b9SBarry Smith Mat Cmat; 11492fbe02b9SBarry Smith 11502fbe02b9SBarry Smith PetscFunctionBegin; 11512fbe02b9SBarry Smith if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 11522fbe02b9SBarry Smith ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 11532fbe02b9SBarry Smith ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr); 11542fbe02b9SBarry Smith ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 11552fbe02b9SBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11562fbe02b9SBarry Smith ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11572fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr); 11582fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr); 11592fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr); 11602fbe02b9SBarry Smith *C = Cmat; 11612fbe02b9SBarry Smith PetscFunctionReturn(0); 11622fbe02b9SBarry Smith } 11632fbe02b9SBarry Smith 11642fbe02b9SBarry Smith #undef __FUNCT__ 11652fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 11662fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 11672fbe02b9SBarry Smith { 11682fbe02b9SBarry Smith PetscErrorCode ierr; 11692fbe02b9SBarry Smith 11702fbe02b9SBarry Smith PetscFunctionBegin; 11712fbe02b9SBarry Smith if (scall == MAT_INITIAL_MATRIX){ 11722fbe02b9SBarry Smith ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 11732fbe02b9SBarry Smith } 11742fbe02b9SBarry Smith ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 11752fbe02b9SBarry Smith PetscFunctionReturn(0); 11762fbe02b9SBarry Smith } 11772fbe02b9SBarry Smith 11782fbe02b9SBarry Smith 11792fbe02b9SBarry Smith #undef __FUNCT__ 118001b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense" 118101b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x) 118201b82886SBarry Smith { 118304fea9ffSBarry Smith MPI_Comm comm = ((PetscObject)A)->comm,dummy_comm; 118401b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)A->spptr; 118501b82886SBarry Smith PetscErrorCode ierr; 118601b82886SBarry Smith PetscInt M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride; 118701b82886SBarry Smith PetscScalar *array; 118801b82886SBarry Smith PetscReal one = 1.0; 1189aeccfd6fSBarry Smith PetscMPIInt size,r_rank,r_nproc,c_rank,c_nproc;; 119001b82886SBarry Smith PLA_Obj v_pla = NULL; 119101b82886SBarry Smith PetscScalar *loc_buf; 119201b82886SBarry Smith Vec loc_x; 119301b82886SBarry Smith 119401b82886SBarry Smith PetscFunctionBegin; 119501b82886SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 119601b82886SBarry Smith 119701b82886SBarry Smith /* Create PLAPACK vector objects, then copy b into PLAPACK b */ 119862b4c0b3SBarry Smith ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr); 119962b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr); 120001b82886SBarry Smith 120101b82886SBarry Smith /* Copy b into rhs_pla */ 120262b4c0b3SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 120362b4c0b3SBarry Smith ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr); 120401b82886SBarry Smith ierr = VecGetArray(b,&array);CHKERRQ(ierr); 120562b4c0b3SBarry Smith ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr); 120601b82886SBarry Smith ierr = VecRestoreArray(b,&array);CHKERRQ(ierr); 120762b4c0b3SBarry Smith ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr); 120862b4c0b3SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 120901b82886SBarry Smith 121001b82886SBarry Smith if (A->factor == FACTOR_LU){ 121101b82886SBarry Smith /* Apply the permutations to the right hand sides */ 121262b4c0b3SBarry Smith ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr); 121301b82886SBarry Smith 121401b82886SBarry Smith /* Solve L y = b, overwriting b with y */ 121562b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 121601b82886SBarry Smith 121701b82886SBarry Smith /* Solve U x = y (=b), overwriting b with x */ 121862b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 121901b82886SBarry Smith } else { /* FACTOR_CHOLESKY */ 122062b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 122162b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 122201b82886SBarry Smith } 122301b82886SBarry Smith 122401b82886SBarry Smith /* Copy PLAPACK x into Petsc vector x */ 122562b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 122662b4c0b3SBarry Smith ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr); 122762b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 122801b82886SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr); 122901b82886SBarry Smith if (!lu->pla_solved){ 123001b82886SBarry Smith 123104fea9ffSBarry Smith ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr); 123204fea9ffSBarry Smith ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr); 123301b82886SBarry Smith /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */ 123401b82886SBarry Smith 123501b82886SBarry Smith /* Create IS and cts for VecScatterring */ 123662b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 123762b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 123801b82886SBarry Smith ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr); 123901b82886SBarry Smith idx_petsc = idx_pla + loc_m; 124001b82886SBarry Smith 124101b82886SBarry Smith rstart = (r_rank*c_nproc+c_rank)*lu->nb; 124201b82886SBarry Smith for (i=0; i<loc_m; i+=lu->nb){ 124301b82886SBarry Smith j = 0; 124401b82886SBarry Smith while (j < lu->nb && i+j < loc_m){ 124501b82886SBarry Smith idx_petsc[i+j] = rstart + j; j++; 124601b82886SBarry Smith } 124701b82886SBarry Smith rstart += size*lu->nb; 124801b82886SBarry Smith } 124901b82886SBarry Smith 125001b82886SBarry Smith for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride; 125101b82886SBarry Smith 125201b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr); 125301b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr); 125401b82886SBarry Smith ierr = PetscFree(idx_pla);CHKERRQ(ierr); 125501b82886SBarry Smith ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr); 125601b82886SBarry Smith } 125701b82886SBarry Smith ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 125801b82886SBarry Smith ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 125901b82886SBarry Smith 126001b82886SBarry Smith /* Free data */ 126101b82886SBarry Smith ierr = VecDestroy(loc_x);CHKERRQ(ierr); 126262b4c0b3SBarry Smith ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr); 126301b82886SBarry Smith 126401b82886SBarry Smith lu->pla_solved = PETSC_TRUE; 126501b82886SBarry Smith PetscFunctionReturn(0); 126601b82886SBarry Smith } 126701b82886SBarry Smith 126801b82886SBarry Smith #undef __FUNCT__ 126901b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense" 127001b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 127101b82886SBarry Smith { 127201b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 127301b82886SBarry Smith PetscErrorCode ierr; 1274eae6fb2eSBarry Smith PetscInt info_pla; 127501b82886SBarry Smith 127601b82886SBarry Smith PetscFunctionBegin; 127762b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 127801b82886SBarry Smith 1279eae6fb2eSBarry Smith /* Copy A into F->lu->A */ 1280eae6fb2eSBarry Smith ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr); 128101b82886SBarry Smith 128201b82886SBarry Smith /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */ 128301b82886SBarry Smith info_pla = PLA_LU(lu->A,lu->pivots); 1284eae6fb2eSBarry Smith if (info_pla) SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla); 128501b82886SBarry Smith 1286eae6fb2eSBarry Smith (*F)->assembled = PETSC_TRUE; 128701b82886SBarry Smith PetscFunctionReturn(0); 128801b82886SBarry Smith } 128901b82886SBarry Smith 129001b82886SBarry Smith #undef __FUNCT__ 129101b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense" 129201b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 129301b82886SBarry Smith { 129401b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 129501b82886SBarry Smith PetscErrorCode ierr; 1296eae6fb2eSBarry Smith PetscInt info_pla; 129701b82886SBarry Smith 129801b82886SBarry Smith PetscFunctionBegin; 1299e0fbc2eeSBarry Smith 1300eae6fb2eSBarry Smith /* Copy A into F->lu->A */ 1301eae6fb2eSBarry Smith ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr); 130201b82886SBarry Smith 130301b82886SBarry Smith /* Factor P A -> Chol */ 130401b82886SBarry Smith info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A); 1305eae6fb2eSBarry Smith if (info_pla) SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla); 130601b82886SBarry Smith 1307eae6fb2eSBarry Smith (*F)->assembled = PETSC_TRUE; 130801b82886SBarry Smith PetscFunctionReturn(0); 130901b82886SBarry Smith } 131001b82886SBarry Smith 1311eae6fb2eSBarry Smith 131201b82886SBarry Smith #undef __FUNCT__ 131301b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private" 131401b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F) 131501b82886SBarry Smith { 131601b82886SBarry Smith PetscErrorCode ierr; 131701b82886SBarry Smith 131801b82886SBarry Smith PetscFunctionBegin; 131901b82886SBarry Smith /* Create the factorization matrix */ 1320eae6fb2eSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr); 1321eae6fb2eSBarry Smith ierr = MatSetSizes(*F,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 1322eae6fb2eSBarry Smith ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr); 1323eae6fb2eSBarry Smith ierr = MatMPIDenseCreatePlapack(*F);CHKERRQ(ierr); 132401b82886SBarry Smith PetscFunctionReturn(0); 132501b82886SBarry Smith } 132601b82886SBarry Smith 132701b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */ 132801b82886SBarry Smith #undef __FUNCT__ 132901b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 133001b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) 133101b82886SBarry Smith { 133201b82886SBarry Smith PetscErrorCode ierr; 1333e1156936SBarry Smith PetscInt M = A->rmap.N; 1334e1156936SBarry Smith Mat_Plapack *lu; 133501b82886SBarry Smith 133601b82886SBarry Smith PetscFunctionBegin; 133701b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 1338e1156936SBarry Smith lu = (Mat_Plapack*)(*F)->spptr; 1339e1156936SBarry Smith ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 134001b82886SBarry Smith (*F)->factor = FACTOR_LU; 134101b82886SBarry Smith PetscFunctionReturn(0); 134201b82886SBarry Smith } 134301b82886SBarry Smith 134401b82886SBarry Smith /* Note the Petsc perm permutation is ignored */ 134501b82886SBarry Smith #undef __FUNCT__ 134601b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 134701b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F) 134801b82886SBarry Smith { 134901b82886SBarry Smith PetscErrorCode ierr; 135001b82886SBarry Smith PetscTruth issymmetric,set; 135101b82886SBarry Smith 135201b82886SBarry Smith PetscFunctionBegin; 135301b82886SBarry Smith ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr); 135401b82886SBarry Smith if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 135501b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 135601b82886SBarry Smith (*F)->factor = FACTOR_CHOLESKY; 135701b82886SBarry Smith PetscFunctionReturn(0); 135801b82886SBarry Smith } 135901b82886SBarry Smith #endif 136001b82886SBarry Smith 13618965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 136209dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 136309dc0095SBarry Smith MatGetRow_MPIDense, 136409dc0095SBarry Smith MatRestoreRow_MPIDense, 136509dc0095SBarry Smith MatMult_MPIDense, 136697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13677c922b88SBarry Smith MatMultTranspose_MPIDense, 13687c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 136901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 137001b82886SBarry Smith MatSolve_MPIDense, 137101b82886SBarry Smith #else 13728965ea79SLois Curfman McInnes 0, 137301b82886SBarry Smith #endif 137409dc0095SBarry Smith 0, 137509dc0095SBarry Smith 0, 137697304618SKris Buschelman /*10*/ 0, 137709dc0095SBarry Smith 0, 137809dc0095SBarry Smith 0, 137909dc0095SBarry Smith 0, 138009dc0095SBarry Smith MatTranspose_MPIDense, 138197304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 13826e4ee0c6SHong Zhang MatEqual_MPIDense, 138309dc0095SBarry Smith MatGetDiagonal_MPIDense, 13845b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 138509dc0095SBarry Smith MatNorm_MPIDense, 138697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 138709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 138809dc0095SBarry Smith 0, 138909dc0095SBarry Smith MatSetOption_MPIDense, 139009dc0095SBarry Smith MatZeroEntries_MPIDense, 139197304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 139201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 13930ad19415SHong Zhang MatLUFactorSymbolic_MPIDense, 139401b82886SBarry Smith MatLUFactorNumeric_MPIDense, 13950ad19415SHong Zhang MatCholeskyFactorSymbolic_MPIDense, 139601b82886SBarry Smith MatCholeskyFactorNumeric_MPIDense, 139701b82886SBarry Smith #else 1398919b68f7SBarry Smith 0, 139901b82886SBarry Smith 0, 140001b82886SBarry Smith 0, 140101b82886SBarry Smith 0, 140201b82886SBarry Smith #endif 140397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1404273d9f13SBarry Smith 0, 140509dc0095SBarry Smith 0, 140609dc0095SBarry Smith MatGetArray_MPIDense, 140709dc0095SBarry Smith MatRestoreArray_MPIDense, 140897304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 140909dc0095SBarry Smith 0, 141009dc0095SBarry Smith 0, 141109dc0095SBarry Smith 0, 141209dc0095SBarry Smith 0, 141397304618SKris Buschelman /*40*/ 0, 14142ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 141509dc0095SBarry Smith 0, 141609dc0095SBarry Smith MatGetValues_MPIDense, 141709dc0095SBarry Smith 0, 141897304618SKris Buschelman /*45*/ 0, 141909dc0095SBarry Smith MatScale_MPIDense, 142009dc0095SBarry Smith 0, 142109dc0095SBarry Smith 0, 142209dc0095SBarry Smith 0, 1423521d7252SBarry Smith /*50*/ 0, 142409dc0095SBarry Smith 0, 142509dc0095SBarry Smith 0, 142609dc0095SBarry Smith 0, 142709dc0095SBarry Smith 0, 142897304618SKris Buschelman /*55*/ 0, 142909dc0095SBarry Smith 0, 143009dc0095SBarry Smith 0, 143109dc0095SBarry Smith 0, 143209dc0095SBarry Smith 0, 143397304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1434b9b97703SBarry Smith MatDestroy_MPIDense, 1435b9b97703SBarry Smith MatView_MPIDense, 1436357abbc8SBarry Smith 0, 143797304618SKris Buschelman 0, 143897304618SKris Buschelman /*65*/ 0, 143997304618SKris Buschelman 0, 144097304618SKris Buschelman 0, 144197304618SKris Buschelman 0, 144297304618SKris Buschelman 0, 144397304618SKris Buschelman /*70*/ 0, 144497304618SKris Buschelman 0, 144597304618SKris Buschelman 0, 144697304618SKris Buschelman 0, 144797304618SKris Buschelman 0, 144897304618SKris Buschelman /*75*/ 0, 144997304618SKris Buschelman 0, 145097304618SKris Buschelman 0, 145197304618SKris Buschelman 0, 145297304618SKris Buschelman 0, 145397304618SKris Buschelman /*80*/ 0, 145497304618SKris Buschelman 0, 145597304618SKris Buschelman 0, 145697304618SKris Buschelman 0, 1457865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1458865e5f61SKris Buschelman 0, 1459865e5f61SKris Buschelman 0, 1460865e5f61SKris Buschelman 0, 1461865e5f61SKris Buschelman 0, 1462865e5f61SKris Buschelman 0, 14632fbe02b9SBarry Smith /*90*/ 14642fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 14652fbe02b9SBarry Smith MatMatMult_MPIDense_MPIDense, 14664ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 14672fbe02b9SBarry Smith MatMatMultNumeric_MPIDense_MPIDense, 14682fbe02b9SBarry Smith #else 1469865e5f61SKris Buschelman 0, 1470865e5f61SKris Buschelman 0, 1471865e5f61SKris Buschelman 0, 14722fbe02b9SBarry Smith #endif 14732fbe02b9SBarry Smith 0, 1474865e5f61SKris Buschelman /*95*/ 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman 0, 1477865e5f61SKris Buschelman 0}; 14788965ea79SLois Curfman McInnes 1479273d9f13SBarry Smith EXTERN_C_BEGIN 14804a2ae208SSatish Balay #undef __FUNCT__ 1481a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1482be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1483a23d5eceSKris Buschelman { 1484a23d5eceSKris Buschelman Mat_MPIDense *a; 1485dfbe8321SBarry Smith PetscErrorCode ierr; 1486a23d5eceSKris Buschelman 1487a23d5eceSKris Buschelman PetscFunctionBegin; 1488a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1489a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1490a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1491a23d5eceSKris Buschelman 1492a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1493f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1494899cda47SBarry Smith ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr); 14955c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 14965c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 149752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1498a23d5eceSKris Buschelman PetscFunctionReturn(0); 1499a23d5eceSKris Buschelman } 1500a23d5eceSKris Buschelman EXTERN_C_END 1501a23d5eceSKris Buschelman 15027878bbefSBarry Smith EXTERN_C_BEGIN 15037878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15047878bbefSBarry Smith #undef __FUNCT__ 15057878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK" 15067878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type) 15077878bbefSBarry Smith { 15087878bbefSBarry Smith PetscFunctionBegin; 15097878bbefSBarry Smith /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */ 15107878bbefSBarry Smith PetscFunctionReturn(0); 15117878bbefSBarry Smith } 15127878bbefSBarry Smith #endif 15137a667e6fSSatish Balay EXTERN_C_END 15147878bbefSBarry Smith 15150bad9183SKris Buschelman /*MC 1516fafad747SKris Buschelman MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 15170bad9183SKris Buschelman 15180bad9183SKris Buschelman Options Database Keys: 15190bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 15200bad9183SKris Buschelman 15210bad9183SKris Buschelman Level: beginner 15220bad9183SKris Buschelman 15237878bbefSBarry Smith MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR) 15247878bbefSBarry Smith for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed 15257878bbefSBarry Smith (run config/configure.py with the option --download-plapack) 15267878bbefSBarry Smith 15277878bbefSBarry Smith 15287878bbefSBarry Smith Options Database Keys: 15297878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition 15307878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition 15317878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector 15327878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size 15337878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag 15347878bbefSBarry Smith 15357878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE 15360bad9183SKris Buschelman M*/ 15370bad9183SKris Buschelman 1538a23d5eceSKris Buschelman EXTERN_C_BEGIN 1539a23d5eceSKris Buschelman #undef __FUNCT__ 15404a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1541be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1542273d9f13SBarry Smith { 1543273d9f13SBarry Smith Mat_MPIDense *a; 1544dfbe8321SBarry Smith PetscErrorCode ierr; 1545273d9f13SBarry Smith 1546273d9f13SBarry Smith PetscFunctionBegin; 154738f2d2fdSLisandro Dalcin ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1548b0a32e0cSBarry Smith mat->data = (void*)a; 1549273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1550273d9f13SBarry Smith mat->factor = 0; 1551273d9f13SBarry Smith mat->mapping = 0; 1552273d9f13SBarry Smith 1553273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 15547adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 15557adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1556273d9f13SBarry Smith 1557899cda47SBarry Smith mat->rmap.bs = mat->cmap.bs = 1; 15586148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr); 15596148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr); 1560899cda47SBarry Smith a->nvec = mat->cmap.n; 1561273d9f13SBarry Smith 1562273d9f13SBarry Smith /* build cache for off array entries formed */ 1563273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 15647adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1565273d9f13SBarry Smith 1566273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1567273d9f13SBarry Smith a->lvec = 0; 1568273d9f13SBarry Smith a->Mvctx = 0; 1569273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1570273d9f13SBarry Smith 1571273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1572273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1573273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1574a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1575a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1576a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 15774ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 15784ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 15794ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 15804ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 15814ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 15824ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 15834ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 15844ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 15854ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 15867878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15877878bbefSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C", 15887878bbefSBarry Smith "MatSetSolverType_MPIDense_PLAPACK", 15897878bbefSBarry Smith MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr); 15907878bbefSBarry Smith #endif 159138aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 159201b82886SBarry Smith 1593273d9f13SBarry Smith PetscFunctionReturn(0); 1594273d9f13SBarry Smith } 1595273d9f13SBarry Smith EXTERN_C_END 1596273d9f13SBarry Smith 1597209238afSKris Buschelman /*MC 1598002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1599209238afSKris Buschelman 1600209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1601209238afSKris Buschelman and MATMPIDENSE otherwise. 1602209238afSKris Buschelman 1603209238afSKris Buschelman Options Database Keys: 1604209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1605209238afSKris Buschelman 1606209238afSKris Buschelman Level: beginner 1607209238afSKris Buschelman 160801b82886SBarry Smith 1609209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1610209238afSKris Buschelman M*/ 1611209238afSKris Buschelman 1612209238afSKris Buschelman EXTERN_C_BEGIN 1613209238afSKris Buschelman #undef __FUNCT__ 1614209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1615be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1616dfbe8321SBarry Smith { 16176849ba73SBarry Smith PetscErrorCode ierr; 161813f74950SBarry Smith PetscMPIInt size; 1619209238afSKris Buschelman 1620209238afSKris Buschelman PetscFunctionBegin; 16217adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1622209238afSKris Buschelman if (size == 1) { 1623209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1624209238afSKris Buschelman } else { 1625209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1626209238afSKris Buschelman } 1627209238afSKris Buschelman PetscFunctionReturn(0); 1628209238afSKris Buschelman } 1629209238afSKris Buschelman EXTERN_C_END 1630209238afSKris Buschelman 16314a2ae208SSatish Balay #undef __FUNCT__ 16324a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1633273d9f13SBarry Smith /*@C 1634273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1635273d9f13SBarry Smith 1636273d9f13SBarry Smith Not collective 1637273d9f13SBarry Smith 1638273d9f13SBarry Smith Input Parameters: 1639273d9f13SBarry Smith . A - the matrix 1640273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1641273d9f13SBarry Smith to control all matrix memory allocation. 1642273d9f13SBarry Smith 1643273d9f13SBarry Smith Notes: 1644273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1645273d9f13SBarry Smith storage by columns. 1646273d9f13SBarry Smith 1647273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1648273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1649273d9f13SBarry Smith set data=PETSC_NULL. 1650273d9f13SBarry Smith 1651273d9f13SBarry Smith Level: intermediate 1652273d9f13SBarry Smith 1653273d9f13SBarry Smith .keywords: matrix,dense, parallel 1654273d9f13SBarry Smith 1655273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1656273d9f13SBarry Smith @*/ 1657be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1658273d9f13SBarry Smith { 1659dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1660273d9f13SBarry Smith 1661273d9f13SBarry Smith PetscFunctionBegin; 1662565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1663a23d5eceSKris Buschelman if (f) { 1664a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1665a23d5eceSKris Buschelman } 1666273d9f13SBarry Smith PetscFunctionReturn(0); 1667273d9f13SBarry Smith } 1668273d9f13SBarry Smith 16694a2ae208SSatish Balay #undef __FUNCT__ 16704a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 16718965ea79SLois Curfman McInnes /*@C 167239ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 16738965ea79SLois Curfman McInnes 1674db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1675db81eaa0SLois Curfman McInnes 16768965ea79SLois Curfman McInnes Input Parameters: 1677db81eaa0SLois Curfman McInnes + comm - MPI communicator 16788965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1679db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 16808965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1681db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 16827f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1683dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 16848965ea79SLois Curfman McInnes 16858965ea79SLois Curfman McInnes Output Parameter: 1686477f1c0bSLois Curfman McInnes . A - the matrix 16878965ea79SLois Curfman McInnes 1688b259b22eSLois Curfman McInnes Notes: 168939ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 169039ddd567SLois Curfman McInnes storage by columns. 16918965ea79SLois Curfman McInnes 169218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 169318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 16947f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 169518f449edSLois Curfman McInnes 16968965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 16978965ea79SLois Curfman McInnes (possibly both). 16988965ea79SLois Curfman McInnes 1699027ccd11SLois Curfman McInnes Level: intermediate 1700027ccd11SLois Curfman McInnes 170139ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 17028965ea79SLois Curfman McInnes 170339ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 17048965ea79SLois Curfman McInnes @*/ 1705be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 17068965ea79SLois Curfman McInnes { 17076849ba73SBarry Smith PetscErrorCode ierr; 170813f74950SBarry Smith PetscMPIInt size; 17098965ea79SLois Curfman McInnes 17103a40ed3dSBarry Smith PetscFunctionBegin; 1711f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1712f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1713273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1714273d9f13SBarry Smith if (size > 1) { 1715273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1716273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1717273d9f13SBarry Smith } else { 1718273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1719273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 17208c469469SLois Curfman McInnes } 17213a40ed3dSBarry Smith PetscFunctionReturn(0); 17228965ea79SLois Curfman McInnes } 17238965ea79SLois Curfman McInnes 17244a2ae208SSatish Balay #undef __FUNCT__ 17254a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 17266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 17278965ea79SLois Curfman McInnes { 17288965ea79SLois Curfman McInnes Mat mat; 17293501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1730dfbe8321SBarry Smith PetscErrorCode ierr; 17318965ea79SLois Curfman McInnes 17323a40ed3dSBarry Smith PetscFunctionBegin; 17338965ea79SLois Curfman McInnes *newmat = 0; 17347adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1735899cda47SBarry Smith ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 17367adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1737834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1738e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 17393501a2bdSLois Curfman McInnes mat->factor = A->factor; 1740c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1741273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 17428965ea79SLois Curfman McInnes 1743899cda47SBarry Smith mat->rmap.rstart = A->rmap.rstart; 1744899cda47SBarry Smith mat->rmap.rend = A->rmap.rend; 17458965ea79SLois Curfman McInnes a->size = oldmat->size; 17468965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1747e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1748b9b97703SBarry Smith a->nvec = oldmat->nvec; 17493782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1750e04c1aa4SHong Zhang 1751899cda47SBarry Smith ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1752899cda47SBarry Smith ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 17537adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 17548965ea79SLois Curfman McInnes 1755329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 17565609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 175752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 175801b82886SBarry Smith 175901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 176001b82886SBarry Smith ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr); 176101b82886SBarry Smith #endif 17628965ea79SLois Curfman McInnes *newmat = mat; 17633a40ed3dSBarry Smith PetscFunctionReturn(0); 17648965ea79SLois Curfman McInnes } 17658965ea79SLois Curfman McInnes 1766e090d566SSatish Balay #include "petscsys.h" 17678965ea79SLois Curfman McInnes 17684a2ae208SSatish Balay #undef __FUNCT__ 17694a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1770f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat) 177190ace30eSBarry Smith { 17726849ba73SBarry Smith PetscErrorCode ierr; 177332dcc486SBarry Smith PetscMPIInt rank,size; 177413f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 177587828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 177690ace30eSBarry Smith MPI_Status status; 177790ace30eSBarry Smith 17783a40ed3dSBarry Smith PetscFunctionBegin; 1779d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1780d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 178190ace30eSBarry Smith 178290ace30eSBarry Smith /* determine ownership of all rows */ 178390ace30eSBarry Smith m = M/size + ((M % size) > rank); 178413f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 178513f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 178690ace30eSBarry Smith rowners[0] = 0; 178790ace30eSBarry Smith for (i=2; i<=size; i++) { 178890ace30eSBarry Smith rowners[i] += rowners[i-1]; 178990ace30eSBarry Smith } 179090ace30eSBarry Smith 1791f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1792f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1793be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1794878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 179590ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 179690ace30eSBarry Smith 179790ace30eSBarry Smith if (!rank) { 179887828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 179990ace30eSBarry Smith 180090ace30eSBarry Smith /* read in my part of the matrix numerical values */ 18010752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 180290ace30eSBarry Smith 180390ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 180490ace30eSBarry Smith vals_ptr = vals; 180590ace30eSBarry Smith for (i=0; i<m; i++) { 180690ace30eSBarry Smith for (j=0; j<N; j++) { 180790ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 180890ace30eSBarry Smith } 180990ace30eSBarry Smith } 181090ace30eSBarry Smith 181190ace30eSBarry Smith /* read in other processors and ship out */ 181290ace30eSBarry Smith for (i=1; i<size; i++) { 181390ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 18140752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 18157adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 181690ace30eSBarry Smith } 18173a40ed3dSBarry Smith } else { 181890ace30eSBarry Smith /* receive numeric values */ 181987828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 182090ace30eSBarry Smith 182190ace30eSBarry Smith /* receive message of values*/ 18227adad957SLisandro Dalcin ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 182390ace30eSBarry Smith 182490ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 182590ace30eSBarry Smith vals_ptr = vals; 182690ace30eSBarry Smith for (i=0; i<m; i++) { 182790ace30eSBarry Smith for (j=0; j<N; j++) { 182890ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 182990ace30eSBarry Smith } 183090ace30eSBarry Smith } 183190ace30eSBarry Smith } 1832606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1833606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 18346d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18356d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18363a40ed3dSBarry Smith PetscFunctionReturn(0); 183790ace30eSBarry Smith } 183890ace30eSBarry Smith 18394a2ae208SSatish Balay #undef __FUNCT__ 18404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1841f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat) 18428965ea79SLois Curfman McInnes { 18438965ea79SLois Curfman McInnes Mat A; 184487828ca2SBarry Smith PetscScalar *vals,*svals; 184519bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 18468965ea79SLois Curfman McInnes MPI_Status status; 184713f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 184813f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 184913f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 185013f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 185113f74950SBarry Smith int fd; 18526849ba73SBarry Smith PetscErrorCode ierr; 18538965ea79SLois Curfman McInnes 18543a40ed3dSBarry Smith PetscFunctionBegin; 1855d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1856d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18578965ea79SLois Curfman McInnes if (!rank) { 1858b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 18590752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1860552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 18618965ea79SLois Curfman McInnes } 18628965ea79SLois Curfman McInnes 186313f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 186490ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 186590ace30eSBarry Smith 186690ace30eSBarry Smith /* 186790ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 186890ace30eSBarry Smith */ 186990ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1870be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 18713a40ed3dSBarry Smith PetscFunctionReturn(0); 187290ace30eSBarry Smith } 187390ace30eSBarry Smith 18748965ea79SLois Curfman McInnes /* determine ownership of all rows */ 1875e44c0bd4SBarry Smith m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1876e44c0bd4SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1877ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 18788965ea79SLois Curfman McInnes rowners[0] = 0; 18798965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 18808965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 18818965ea79SLois Curfman McInnes } 18828965ea79SLois Curfman McInnes rstart = rowners[rank]; 18838965ea79SLois Curfman McInnes rend = rowners[rank+1]; 18848965ea79SLois Curfman McInnes 18858965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 188613f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 18878965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 18888965ea79SLois Curfman McInnes if (!rank) { 188913f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 18900752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 189113f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 18928965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 18931466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1894606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1895ca161407SBarry Smith } else { 18961466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 18978965ea79SLois Curfman McInnes } 18988965ea79SLois Curfman McInnes 18998965ea79SLois Curfman McInnes if (!rank) { 19008965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 190113f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 190213f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 19038965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19048965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 19058965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 19068965ea79SLois Curfman McInnes } 19078965ea79SLois Curfman McInnes } 1908606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 19098965ea79SLois Curfman McInnes 19108965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 19118965ea79SLois Curfman McInnes maxnz = 0; 19128965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19130452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 19148965ea79SLois Curfman McInnes } 191513f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 19168965ea79SLois Curfman McInnes 19178965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 19188965ea79SLois Curfman McInnes nz = procsnz[0]; 191913f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19200752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 19218965ea79SLois Curfman McInnes 19228965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 19238965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19248965ea79SLois Curfman McInnes nz = procsnz[i]; 19250752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 192613f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 19278965ea79SLois Curfman McInnes } 1928606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 19293a40ed3dSBarry Smith } else { 19308965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 19318965ea79SLois Curfman McInnes nz = 0; 19328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19338965ea79SLois Curfman McInnes nz += ourlens[i]; 19348965ea79SLois Curfman McInnes } 193513f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19368965ea79SLois Curfman McInnes 19378965ea79SLois Curfman McInnes /* receive message of column indices*/ 193813f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 193913f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 194029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 19418965ea79SLois Curfman McInnes } 19428965ea79SLois Curfman McInnes 19438965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 194413f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 19458965ea79SLois Curfman McInnes jj = 0; 19468965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19478965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 19488965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 19498965ea79SLois Curfman McInnes jj++; 19508965ea79SLois Curfman McInnes } 19518965ea79SLois Curfman McInnes } 19528965ea79SLois Curfman McInnes 19538965ea79SLois Curfman McInnes /* create our matrix */ 19548965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19558965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 19568965ea79SLois Curfman McInnes } 1957f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1958f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1959be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1960878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 19618965ea79SLois Curfman McInnes A = *newmat; 19628965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19638965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 19648965ea79SLois Curfman McInnes } 19658965ea79SLois Curfman McInnes 19668965ea79SLois Curfman McInnes if (!rank) { 196787828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 19688965ea79SLois Curfman McInnes 19698965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 19708965ea79SLois Curfman McInnes nz = procsnz[0]; 19710752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19728965ea79SLois Curfman McInnes 19738965ea79SLois Curfman McInnes /* insert into matrix */ 19748965ea79SLois Curfman McInnes jj = rstart; 19758965ea79SLois Curfman McInnes smycols = mycols; 19768965ea79SLois Curfman McInnes svals = vals; 19778965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19788965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 19798965ea79SLois Curfman McInnes smycols += ourlens[i]; 19808965ea79SLois Curfman McInnes svals += ourlens[i]; 19818965ea79SLois Curfman McInnes jj++; 19828965ea79SLois Curfman McInnes } 19838965ea79SLois Curfman McInnes 19848965ea79SLois Curfman McInnes /* read in other processors and ship out */ 19858965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19868965ea79SLois Curfman McInnes nz = procsnz[i]; 19870752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19887adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 19898965ea79SLois Curfman McInnes } 1990606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 19913a40ed3dSBarry Smith } else { 19928965ea79SLois Curfman McInnes /* receive numeric values */ 199384d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 19948965ea79SLois Curfman McInnes 19958965ea79SLois Curfman McInnes /* receive message of values*/ 19967adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 1997ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 199829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 19998965ea79SLois Curfman McInnes 20008965ea79SLois Curfman McInnes /* insert into matrix */ 20018965ea79SLois Curfman McInnes jj = rstart; 20028965ea79SLois Curfman McInnes smycols = mycols; 20038965ea79SLois Curfman McInnes svals = vals; 20048965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20058965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 20068965ea79SLois Curfman McInnes smycols += ourlens[i]; 20078965ea79SLois Curfman McInnes svals += ourlens[i]; 20088965ea79SLois Curfman McInnes jj++; 20098965ea79SLois Curfman McInnes } 20108965ea79SLois Curfman McInnes } 2011606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 2012606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 2013606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 2014606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 20158965ea79SLois Curfman McInnes 20166d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20176d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20183a40ed3dSBarry Smith PetscFunctionReturn(0); 20198965ea79SLois Curfman McInnes } 202090ace30eSBarry Smith 20216e4ee0c6SHong Zhang #undef __FUNCT__ 20226e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 20236e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 20246e4ee0c6SHong Zhang { 20256e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 20266e4ee0c6SHong Zhang Mat a,b; 20276e4ee0c6SHong Zhang PetscTruth flg; 20286e4ee0c6SHong Zhang PetscErrorCode ierr; 202990ace30eSBarry Smith 20306e4ee0c6SHong Zhang PetscFunctionBegin; 20316e4ee0c6SHong Zhang a = matA->A; 20326e4ee0c6SHong Zhang b = matB->A; 20336e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 20347adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 20356e4ee0c6SHong Zhang PetscFunctionReturn(0); 20366e4ee0c6SHong Zhang } 203790ace30eSBarry Smith 203809d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 203909d27a7eSBarry Smith 204009d27a7eSBarry Smith #undef __FUNCT__ 204109d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage" 204209d27a7eSBarry Smith /*@C 204309d27a7eSBarry Smith PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 204409d27a7eSBarry Smith Level: developer 204509d27a7eSBarry Smith 204609d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK 204709d27a7eSBarry Smith .seealso: PetscFinalize() 204809d27a7eSBarry Smith @*/ 204909d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 205009d27a7eSBarry Smith { 205109d27a7eSBarry Smith PetscErrorCode ierr; 205209d27a7eSBarry Smith 205309d27a7eSBarry Smith PetscFunctionBegin; 205409d27a7eSBarry Smith ierr = PLA_Finalize();CHKERRQ(ierr); 205509d27a7eSBarry Smith PetscFunctionReturn(0); 205609d27a7eSBarry Smith } 205709d27a7eSBarry Smith 205809d27a7eSBarry Smith #undef __FUNCT__ 205909d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage" 206009d27a7eSBarry Smith /*@C 206109d27a7eSBarry Smith PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 206209d27a7eSBarry Smith called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize() 206309d27a7eSBarry Smith when using static libraries. 206409d27a7eSBarry Smith 206509d27a7eSBarry Smith Input Parameter: 206609d27a7eSBarry Smith path - The dynamic library path, or PETSC_NULL 206709d27a7eSBarry Smith 206809d27a7eSBarry Smith Level: developer 206909d27a7eSBarry Smith 207009d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK 207109d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize() 207209d27a7eSBarry Smith @*/ 207309d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[]) 207409d27a7eSBarry Smith { 207504fea9ffSBarry Smith MPI_Comm comm = PETSC_COMM_WORLD; 2076eae6fb2eSBarry Smith PetscMPIInt size; 207709d27a7eSBarry Smith PetscErrorCode ierr; 207809d27a7eSBarry Smith 207909d27a7eSBarry Smith PetscFunctionBegin; 208009d27a7eSBarry Smith if (!PLA_Initialized(PETSC_NULL)) { 208109d27a7eSBarry Smith 208209d27a7eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 208304fea9ffSBarry Smith Plapack_nprows = 1; 208404fea9ffSBarry Smith Plapack_npcols = size; 208509d27a7eSBarry Smith 2086aeccfd6fSBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr); 2087aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 2088aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 208979b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG) 209079b0a62dSBarry Smith Plapack_ierror = 3; 209179b0a62dSBarry Smith #else 209279b0a62dSBarry Smith Plapack_ierror = 0; 209379b0a62dSBarry Smith #endif 2094eae6fb2eSBarry Smith ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr); 2095eae6fb2eSBarry Smith if (Plapack_ierror){ 2096eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 2097aeccfd6fSBarry Smith } else { 2098eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 2099aeccfd6fSBarry Smith } 2100aeccfd6fSBarry Smith 2101eae6fb2eSBarry Smith Plapack_nb_alg = 0; 210279b0a62dSBarry Smith ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr); 2103eae6fb2eSBarry Smith if (Plapack_nb_alg) { 2104eae6fb2eSBarry Smith ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr); 2105aeccfd6fSBarry Smith } 2106aeccfd6fSBarry Smith PetscOptionsEnd(); 2107aeccfd6fSBarry Smith 210804fea9ffSBarry Smith ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 210904fea9ffSBarry Smith ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 211009d27a7eSBarry Smith ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 211109d27a7eSBarry Smith } 211209d27a7eSBarry Smith PetscFunctionReturn(0); 211309d27a7eSBarry Smith } 211490ace30eSBarry Smith 211590ace30eSBarry Smith 211609d27a7eSBarry Smith #endif 2117