xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision d083f849a86f1f43e18d534ee43954e2786cb29a)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
9baa3c1c6SHong Zhang #include <petscblaslapack.h>
108965ea79SLois Curfman McInnes 
11ab92ecdeSBarry Smith /*@
12ab92ecdeSBarry Smith 
13ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
14ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
15ab92ecdeSBarry Smith 
16ab92ecdeSBarry Smith     Input Parameter:
17ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
18ab92ecdeSBarry Smith 
19ab92ecdeSBarry Smith     Output Parameter:
20ab92ecdeSBarry Smith .      B - the inner matrix
21ab92ecdeSBarry Smith 
228e6c10adSSatish Balay     Level: intermediate
238e6c10adSSatish Balay 
24ab92ecdeSBarry Smith @*/
25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
26ab92ecdeSBarry Smith {
27ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
28ab92ecdeSBarry Smith   PetscErrorCode ierr;
29ace3abfcSBarry Smith   PetscBool      flg;
30ab92ecdeSBarry Smith 
31ab92ecdeSBarry Smith   PetscFunctionBegin;
32251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
332205254eSKarl Rupp   if (flg) *B = mat->A;
342205254eSKarl Rupp   else *B = A;
35ab92ecdeSBarry Smith   PetscFunctionReturn(0);
36ab92ecdeSBarry Smith }
37ab92ecdeSBarry Smith 
38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
39ba8c8a56SBarry Smith {
40ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
41ba8c8a56SBarry Smith   PetscErrorCode ierr;
42d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
43ba8c8a56SBarry Smith 
44ba8c8a56SBarry Smith   PetscFunctionBegin;
45e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
46ba8c8a56SBarry Smith   lrow = row - rstart;
47ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
48ba8c8a56SBarry Smith   PetscFunctionReturn(0);
49ba8c8a56SBarry Smith }
50ba8c8a56SBarry Smith 
51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
52ba8c8a56SBarry Smith {
53ba8c8a56SBarry Smith   PetscErrorCode ierr;
54ba8c8a56SBarry Smith 
55ba8c8a56SBarry Smith   PetscFunctionBegin;
56ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
57ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
6111bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
620de54da6SSatish Balay {
630de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
646849ba73SBarry Smith   PetscErrorCode ierr;
65d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6687828ca2SBarry Smith   PetscScalar    *array;
670de54da6SSatish Balay   MPI_Comm       comm;
6811bd1e4dSLisandro Dalcin   Mat            B;
690de54da6SSatish Balay 
700de54da6SSatish Balay   PetscFunctionBegin;
71e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
720de54da6SSatish Balay 
7311bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7411bd1e4dSLisandro Dalcin   if (!B) {
750de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7611bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
7811bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
798c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8011bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
818c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8211bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     *a   = B;
8611bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
872205254eSKarl Rupp   } else *a = B;
880de54da6SSatish Balay   PetscFunctionReturn(0);
890de54da6SSatish Balay }
900de54da6SSatish Balay 
9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
928965ea79SLois Curfman McInnes {
9339b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
94dfbe8321SBarry Smith   PetscErrorCode ierr;
95d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
96ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
978965ea79SLois Curfman McInnes 
983a40ed3dSBarry Smith   PetscFunctionBegin;
998965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1005ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
101e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1028965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1038965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10439b7565bSBarry Smith       if (roworiented) {
10539b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1063a40ed3dSBarry Smith       } else {
1078965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1085ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
109e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11039b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11139b7565bSBarry Smith         }
1128965ea79SLois Curfman McInnes       }
1132205254eSKarl Rupp     } else if (!A->donotstash) {
1145080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11539b7565bSBarry Smith       if (roworiented) {
116b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
117d36fbae8SSatish Balay       } else {
118b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
11939b7565bSBarry Smith       }
120b49de8d1SLois Curfman McInnes     }
121b49de8d1SLois Curfman McInnes   }
1223a40ed3dSBarry Smith   PetscFunctionReturn(0);
123b49de8d1SLois Curfman McInnes }
124b49de8d1SLois Curfman McInnes 
12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
126b49de8d1SLois Curfman McInnes {
127b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
128dfbe8321SBarry Smith   PetscErrorCode ierr;
129d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
130b49de8d1SLois Curfman McInnes 
1313a40ed3dSBarry Smith   PetscFunctionBegin;
132b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
133e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
134e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
135b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
136b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
137b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
138e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
139e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
140b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
141b49de8d1SLois Curfman McInnes       }
142e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1438965ea79SLois Curfman McInnes   }
1443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1458965ea79SLois Curfman McInnes }
1468965ea79SLois Curfman McInnes 
14749a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
14849a6ff4bSBarry Smith {
14949a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
15049a6ff4bSBarry Smith   PetscErrorCode ierr;
15149a6ff4bSBarry Smith 
15249a6ff4bSBarry Smith   PetscFunctionBegin;
15349a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
15449a6ff4bSBarry Smith   PetscFunctionReturn(0);
15549a6ff4bSBarry Smith }
15649a6ff4bSBarry Smith 
157d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
158ff14e315SSatish Balay {
159ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
160dfbe8321SBarry Smith   PetscErrorCode ierr;
161ff14e315SSatish Balay 
1623a40ed3dSBarry Smith   PetscFunctionBegin;
1638c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1643a40ed3dSBarry Smith   PetscFunctionReturn(0);
165ff14e315SSatish Balay }
166ff14e315SSatish Balay 
1678572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[])
1688572280aSBarry Smith {
1698572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1708572280aSBarry Smith   PetscErrorCode ierr;
1718572280aSBarry Smith 
1728572280aSBarry Smith   PetscFunctionBegin;
1738572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1748572280aSBarry Smith   PetscFunctionReturn(0);
1758572280aSBarry Smith }
1768572280aSBarry Smith 
177d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[])
178d3042a70SBarry Smith {
179d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
180d3042a70SBarry Smith   PetscErrorCode ierr;
181d3042a70SBarry Smith 
182d3042a70SBarry Smith   PetscFunctionBegin;
183d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
184d3042a70SBarry Smith   PetscFunctionReturn(0);
185d3042a70SBarry Smith }
186d3042a70SBarry Smith 
187d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
188d3042a70SBarry Smith {
189d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
190d3042a70SBarry Smith   PetscErrorCode ierr;
191d3042a70SBarry Smith 
192d3042a70SBarry Smith   PetscFunctionBegin;
193d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
194d3042a70SBarry Smith   PetscFunctionReturn(0);
195d3042a70SBarry Smith }
196d3042a70SBarry Smith 
1977dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
198ca3fa75bSLois Curfman McInnes {
199ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
200ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
2016849ba73SBarry Smith   PetscErrorCode ierr;
2024aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2035d0c19d7SBarry Smith   const PetscInt *irow,*icol;
20487828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
205ca3fa75bSLois Curfman McInnes   Mat            newmat;
2064aa3045dSJed Brown   IS             iscol_local;
20742a884f0SBarry Smith   MPI_Comm       comm_is,comm_mat;
208ca3fa75bSLois Curfman McInnes 
209ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
21042a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
21142a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
21242a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
21342a884f0SBarry Smith 
2144aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
215ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2164aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
217b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
218b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2194aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
220ca3fa75bSLois Curfman McInnes 
221ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2227eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2237eba5e9cSLois Curfman McInnes      original matrix! */
224ca3fa75bSLois Curfman McInnes 
225ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2267eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
227ca3fa75bSLois Curfman McInnes 
228ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
229ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
230e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2317eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
232ca3fa75bSLois Curfman McInnes     newmat = *B;
233ca3fa75bSLois Curfman McInnes   } else {
234ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
235ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2364aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2377adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2380298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
239ca3fa75bSLois Curfman McInnes   }
240ca3fa75bSLois Curfman McInnes 
241ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
242ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
243ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
244ca3fa75bSLois Curfman McInnes 
2454aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
24625a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
247ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2487eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
249ca3fa75bSLois Curfman McInnes     }
250ca3fa75bSLois Curfman McInnes   }
251ca3fa75bSLois Curfman McInnes 
252ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
253ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
254ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
255ca3fa75bSLois Curfman McInnes 
256ca3fa75bSLois Curfman McInnes   /* Free work space */
257ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2585bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
25932bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
260ca3fa75bSLois Curfman McInnes   *B   = newmat;
261ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
262ca3fa75bSLois Curfman McInnes }
263ca3fa75bSLois Curfman McInnes 
2648c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
265ff14e315SSatish Balay {
26673a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
26773a71a0fSBarry Smith   PetscErrorCode ierr;
26873a71a0fSBarry Smith 
2693a40ed3dSBarry Smith   PetscFunctionBegin;
2708c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
272ff14e315SSatish Balay }
273ff14e315SSatish Balay 
2748572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[])
2758572280aSBarry Smith {
2768572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2778572280aSBarry Smith   PetscErrorCode ierr;
2788572280aSBarry Smith 
2798572280aSBarry Smith   PetscFunctionBegin;
2808572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
2818572280aSBarry Smith   PetscFunctionReturn(0);
2828572280aSBarry Smith }
2838572280aSBarry Smith 
284dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2858965ea79SLois Curfman McInnes {
28639ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
287ce94432eSBarry Smith   MPI_Comm       comm;
288dfbe8321SBarry Smith   PetscErrorCode ierr;
28913f74950SBarry Smith   PetscInt       nstash,reallocs;
2908965ea79SLois Curfman McInnes   InsertMode     addv;
2918965ea79SLois Curfman McInnes 
2923a40ed3dSBarry Smith   PetscFunctionBegin;
293ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2948965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
295b2566f29SBarry Smith   ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
296ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
297e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2988965ea79SLois Curfman McInnes 
299d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3008798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
301ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3038965ea79SLois Curfman McInnes }
3048965ea79SLois Curfman McInnes 
305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3068965ea79SLois Curfman McInnes {
30739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3086849ba73SBarry Smith   PetscErrorCode ierr;
30913f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
31013f74950SBarry Smith   PetscMPIInt    n;
31187828ca2SBarry Smith   PetscScalar    *val;
3128965ea79SLois Curfman McInnes 
3133a40ed3dSBarry Smith   PetscFunctionBegin;
3148965ea79SLois Curfman McInnes   /*  wait on receives */
3157ef1d9bdSSatish Balay   while (1) {
3168798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3177ef1d9bdSSatish Balay     if (!flg) break;
3188965ea79SLois Curfman McInnes 
3197ef1d9bdSSatish Balay     for (i=0; i<n;) {
3207ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
3212205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
3222205254eSKarl Rupp         if (row[j] != rstart) break;
3232205254eSKarl Rupp       }
3247ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
3257ef1d9bdSSatish Balay       else       ncols = n-i;
3267ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
3274b4eb8d3SJed Brown       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3287ef1d9bdSSatish Balay       i    = j;
3298965ea79SLois Curfman McInnes     }
3307ef1d9bdSSatish Balay   }
3318798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3328965ea79SLois Curfman McInnes 
33339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
33439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3358965ea79SLois Curfman McInnes 
3366d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
33739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3388965ea79SLois Curfman McInnes   }
3393a40ed3dSBarry Smith   PetscFunctionReturn(0);
3408965ea79SLois Curfman McInnes }
3418965ea79SLois Curfman McInnes 
342dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3438965ea79SLois Curfman McInnes {
344dfbe8321SBarry Smith   PetscErrorCode ierr;
34539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3463a40ed3dSBarry Smith 
3473a40ed3dSBarry Smith   PetscFunctionBegin;
3483a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3493a40ed3dSBarry Smith   PetscFunctionReturn(0);
3508965ea79SLois Curfman McInnes }
3518965ea79SLois Curfman McInnes 
3528965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3538965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3548965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3553501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3568965ea79SLois Curfman McInnes    routine.
3578965ea79SLois Curfman McInnes */
3582b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3598965ea79SLois Curfman McInnes {
36039ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3616849ba73SBarry Smith   PetscErrorCode    ierr;
362d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
36376ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
36413f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3657adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
36613f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
36713f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
368ce94432eSBarry Smith   MPI_Comm          comm;
3698965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3708965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
371ace3abfcSBarry Smith   PetscBool         found;
37297b48c8fSBarry Smith   const PetscScalar *xx;
37397b48c8fSBarry Smith   PetscScalar       *bb;
3748965ea79SLois Curfman McInnes 
3753a40ed3dSBarry Smith   PetscFunctionBegin;
376ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
377ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
378b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3798965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
380f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
381037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3828965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3838965ea79SLois Curfman McInnes     idx   = rows[i];
38435d8aa7fSBarry Smith     found = PETSC_FALSE;
3858965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3868965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
38776ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3888965ea79SLois Curfman McInnes       }
3898965ea79SLois Curfman McInnes     }
390e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3918965ea79SLois Curfman McInnes   }
3922205254eSKarl Rupp   nsends = 0;
39376ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3948965ea79SLois Curfman McInnes 
3958965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
39676ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   /* post receives:   */
399785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
400854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
4018965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
40213f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4038965ea79SLois Curfman McInnes   }
4048965ea79SLois Curfman McInnes 
4058965ea79SLois Curfman McInnes   /* do sends:
4068965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
4078965ea79SLois Curfman McInnes          the ith processor
4088965ea79SLois Curfman McInnes   */
409854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
410854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
411854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes 
4138965ea79SLois Curfman McInnes   starts[0] = 0;
41476ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4152205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
4162205254eSKarl Rupp 
4172205254eSKarl Rupp   starts[0] = 0;
41876ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4198965ea79SLois Curfman McInnes   count = 0;
4208965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
42176ec1555SBarry Smith     if (sizes[2*i+1]) {
42276ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4238965ea79SLois Curfman McInnes     }
4248965ea79SLois Curfman McInnes   }
425606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4268965ea79SLois Curfman McInnes 
4278965ea79SLois Curfman McInnes   base = owners[rank];
4288965ea79SLois Curfman McInnes 
4298965ea79SLois Curfman McInnes   /*  wait on receives */
430dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
43174ed9c26SBarry Smith   count = nrecvs;
43274ed9c26SBarry Smith   slen  = 0;
4338965ea79SLois Curfman McInnes   while (count) {
434ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4358965ea79SLois Curfman McInnes     /* unpack receives into our local space */
43613f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4372205254eSKarl Rupp 
4388965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4398965ea79SLois Curfman McInnes     lens[imdex]   = n;
4408965ea79SLois Curfman McInnes     slen += n;
4418965ea79SLois Curfman McInnes     count--;
4428965ea79SLois Curfman McInnes   }
443606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4448965ea79SLois Curfman McInnes 
4458965ea79SLois Curfman McInnes   /* move the data into the send scatter */
446854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4478965ea79SLois Curfman McInnes   count = 0;
4488965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4498965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4508965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4518965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4528965ea79SLois Curfman McInnes     }
4538965ea79SLois Curfman McInnes   }
454606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
45574ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
456606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
45776ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4588965ea79SLois Curfman McInnes 
45997b48c8fSBarry Smith   /* fix right hand side if needed */
46097b48c8fSBarry Smith   if (x && b) {
46197b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
46297b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
46397b48c8fSBarry Smith     for (i=0; i<slen; i++) {
46497b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
46597b48c8fSBarry Smith     }
46697b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
46797b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
46897b48c8fSBarry Smith   }
46997b48c8fSBarry Smith 
4708965ea79SLois Curfman McInnes   /* actually zap the local rows */
471b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
472e2eb51b1SBarry Smith   if (diag != 0.0) {
473b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
474b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
475b9679d65SBarry Smith 
476b9679d65SBarry Smith     for (i=0; i<slen; i++) {
477b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
478b9679d65SBarry Smith     }
479b9679d65SBarry Smith   }
480606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4818965ea79SLois Curfman McInnes 
4828965ea79SLois Curfman McInnes   /* wait on sends */
4838965ea79SLois Curfman McInnes   if (nsends) {
484785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
485ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
486606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4878965ea79SLois Curfman McInnes   }
488606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
489606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4903a40ed3dSBarry Smith   PetscFunctionReturn(0);
4918965ea79SLois Curfman McInnes }
4928965ea79SLois Curfman McInnes 
493cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
494cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
495cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
496cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
497cc2e6a90SBarry Smith 
498dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4998965ea79SLois Curfman McInnes {
50039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
501dfbe8321SBarry Smith   PetscErrorCode ierr;
502c456f294SBarry Smith 
5033a40ed3dSBarry Smith   PetscFunctionBegin;
504ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
505ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
506cc2e6a90SBarry Smith   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
5073a40ed3dSBarry Smith   PetscFunctionReturn(0);
5088965ea79SLois Curfman McInnes }
5098965ea79SLois Curfman McInnes 
510dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
5118965ea79SLois Curfman McInnes {
51239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
513dfbe8321SBarry Smith   PetscErrorCode ierr;
514c456f294SBarry Smith 
5153a40ed3dSBarry Smith   PetscFunctionBegin;
516ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
517ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
518cc2e6a90SBarry Smith   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
5193a40ed3dSBarry Smith   PetscFunctionReturn(0);
5208965ea79SLois Curfman McInnes }
5218965ea79SLois Curfman McInnes 
522dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
523096963f5SLois Curfman McInnes {
524096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
525dfbe8321SBarry Smith   PetscErrorCode ierr;
52687828ca2SBarry Smith   PetscScalar    zero = 0.0;
527096963f5SLois Curfman McInnes 
5283a40ed3dSBarry Smith   PetscFunctionBegin;
5292dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
530cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
531ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
532ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5333a40ed3dSBarry Smith   PetscFunctionReturn(0);
534096963f5SLois Curfman McInnes }
535096963f5SLois Curfman McInnes 
536dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
537096963f5SLois Curfman McInnes {
538096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
539dfbe8321SBarry Smith   PetscErrorCode ierr;
540096963f5SLois Curfman McInnes 
5413a40ed3dSBarry Smith   PetscFunctionBegin;
5423501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
543cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
544ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
545ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5463a40ed3dSBarry Smith   PetscFunctionReturn(0);
547096963f5SLois Curfman McInnes }
548096963f5SLois Curfman McInnes 
549dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5508965ea79SLois Curfman McInnes {
55139ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
552096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
553dfbe8321SBarry Smith   PetscErrorCode ierr;
554d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
55587828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
556ed3cc1f0SBarry Smith 
5573a40ed3dSBarry Smith   PetscFunctionBegin;
5582dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5591ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
560096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
561e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
562d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
563d0f46423SBarry Smith   radd = A->rmap->rstart*m;
56444cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
565096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
566096963f5SLois Curfman McInnes   }
5671ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5683a40ed3dSBarry Smith   PetscFunctionReturn(0);
5698965ea79SLois Curfman McInnes }
5708965ea79SLois Curfman McInnes 
571dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5728965ea79SLois Curfman McInnes {
5733501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode ierr;
575ed3cc1f0SBarry Smith 
5763a40ed3dSBarry Smith   PetscFunctionBegin;
577aa482453SBarry Smith #if defined(PETSC_USE_LOG)
578d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5798965ea79SLois Curfman McInnes #endif
5808798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5816bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5826bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5836bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
58401b82886SBarry Smith 
585bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
586dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5878baccfbdSHong Zhang 
58849a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
5898baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5908572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5918572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5928572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
593d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
594d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
5958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5968baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5978baccfbdSHong Zhang #endif
598bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
599bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
600bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
601bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6028baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6038baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6048baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
60586aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
60686aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
6073a40ed3dSBarry Smith   PetscFunctionReturn(0);
6088965ea79SLois Curfman McInnes }
60939ddd567SLois Curfman McInnes 
6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
6118965ea79SLois Curfman McInnes {
61239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
613dfbe8321SBarry Smith   PetscErrorCode    ierr;
614aa05aa95SBarry Smith   PetscViewerFormat format;
615aa05aa95SBarry Smith   int               fd;
616d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
617aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
618578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
619aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
6207056b6fcSBarry Smith 
6213a40ed3dSBarry Smith   PetscFunctionBegin;
62239ddd567SLois Curfman McInnes   if (mdn->size == 1) {
62339ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
624aa05aa95SBarry Smith   } else {
625aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
626ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
627ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
628aa05aa95SBarry Smith 
629aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
630f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
631aa05aa95SBarry Smith 
632aa05aa95SBarry Smith       if (!rank) {
633aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
6340700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
635d0f46423SBarry Smith         header[1] = mat->rmap->N;
636aa05aa95SBarry Smith         header[2] = N;
637aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
638aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
639aa05aa95SBarry Smith 
640aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
641d0f46423SBarry Smith         mmax = mat->rmap->n;
642aa05aa95SBarry Smith         for (i=1; i<size; i++) {
643d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6448965ea79SLois Curfman McInnes         }
645785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
646aa05aa95SBarry Smith 
647aa05aa95SBarry Smith         /* write out local array, by rows */
648d0f46423SBarry Smith         m = mat->rmap->n;
649aa05aa95SBarry Smith         v = a->v;
650aa05aa95SBarry Smith         for (j=0; j<N; j++) {
651aa05aa95SBarry Smith           for (i=0; i<m; i++) {
652578230a0SSatish Balay             work[j + i*N] = *v++;
653aa05aa95SBarry Smith           }
654aa05aa95SBarry Smith         }
655aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
656aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
657aa05aa95SBarry Smith         mmax = 0;
658aa05aa95SBarry Smith         for (i=1; i<size; i++) {
659d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
660aa05aa95SBarry Smith         }
661785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
662aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
663f8009846SMatthew Knepley           v    = vv;
664d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
665ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
666aa05aa95SBarry Smith 
667aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
668aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
669578230a0SSatish Balay               work[j + i*N] = *v++;
670aa05aa95SBarry Smith             }
671aa05aa95SBarry Smith           }
672aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
673aa05aa95SBarry Smith         }
674aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
675578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
676aa05aa95SBarry Smith       } else {
677ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
678aa05aa95SBarry Smith       }
6796a9046bcSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)");
680aa05aa95SBarry Smith   }
6813a40ed3dSBarry Smith   PetscFunctionReturn(0);
6828965ea79SLois Curfman McInnes }
6838965ea79SLois Curfman McInnes 
6847da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
6859804daf3SBarry Smith #include <petscdraw.h>
6866849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6878965ea79SLois Curfman McInnes {
68839ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
689dfbe8321SBarry Smith   PetscErrorCode    ierr;
6907da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
69119fd82e9SBarry Smith   PetscViewerType   vtype;
692ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
693b0a32e0cSBarry Smith   PetscViewer       sviewer;
694f3ef73ceSBarry Smith   PetscViewerFormat format;
6958965ea79SLois Curfman McInnes 
6963a40ed3dSBarry Smith   PetscFunctionBegin;
697251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
698251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
69932077d6dSBarry Smith   if (iascii) {
700b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
701b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
702456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
7034e220ebcSLois Curfman McInnes       MatInfo info;
704888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
7051575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
7067b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
707b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7081575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
7095d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
7103a40ed3dSBarry Smith       PetscFunctionReturn(0);
711fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
7123a40ed3dSBarry Smith       PetscFunctionReturn(0);
7138965ea79SLois Curfman McInnes     }
714f1af5d2fSBarry Smith   } else if (isdraw) {
715b0a32e0cSBarry Smith     PetscDraw draw;
716ace3abfcSBarry Smith     PetscBool isnull;
717f1af5d2fSBarry Smith 
718b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
719b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
720f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
721f1af5d2fSBarry Smith   }
72277ed5343SBarry Smith 
7237da1fb6eSBarry Smith   {
7248965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7258965ea79SLois Curfman McInnes     Mat         A;
726d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
727ba8c8a56SBarry Smith     PetscInt    *cols;
728ba8c8a56SBarry Smith     PetscScalar *vals;
7298965ea79SLois Curfman McInnes 
730ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
7318965ea79SLois Curfman McInnes     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7333a40ed3dSBarry Smith     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7358965ea79SLois Curfman McInnes     }
7367adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
737878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
7380298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7393bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7408965ea79SLois Curfman McInnes 
74139ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
74239ddd567SLois Curfman McInnes        but it's quick for now */
74351022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7442205254eSKarl Rupp 
7452205254eSKarl Rupp     row = mat->rmap->rstart;
7462205254eSKarl Rupp     m   = mdn->A->rmap->n;
7478965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
748ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
749ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
750ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
75139ddd567SLois Curfman McInnes       row++;
7528965ea79SLois Curfman McInnes     }
7538965ea79SLois Curfman McInnes 
7546d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7556d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7563f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
757b9b97703SBarry Smith     if (!rank) {
7581a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7597da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7608965ea79SLois Curfman McInnes     }
7613f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
762b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7636bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7648965ea79SLois Curfman McInnes   }
7653a40ed3dSBarry Smith   PetscFunctionReturn(0);
7668965ea79SLois Curfman McInnes }
7678965ea79SLois Curfman McInnes 
768dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7698965ea79SLois Curfman McInnes {
770dfbe8321SBarry Smith   PetscErrorCode ierr;
771ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7728965ea79SLois Curfman McInnes 
773433994e6SBarry Smith   PetscFunctionBegin;
774251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
775251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
776251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
777251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7780f5bd95cSBarry Smith 
77932077d6dSBarry Smith   if (iascii || issocket || isdraw) {
780f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7810f5bd95cSBarry Smith   } else if (isbinary) {
7823a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
78311aeaf0aSBarry Smith   }
7843a40ed3dSBarry Smith   PetscFunctionReturn(0);
7858965ea79SLois Curfman McInnes }
7868965ea79SLois Curfman McInnes 
787dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7888965ea79SLois Curfman McInnes {
7893501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7903501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
791dfbe8321SBarry Smith   PetscErrorCode ierr;
792329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7938965ea79SLois Curfman McInnes 
7943a40ed3dSBarry Smith   PetscFunctionBegin;
7954e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7962205254eSKarl Rupp 
7974e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7982205254eSKarl Rupp 
7994e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
8004e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
8018965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
8024e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
8034e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
8044e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
8054e220ebcSLois Curfman McInnes     info->memory       = isend[3];
8064e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
8078965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
808b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8092205254eSKarl Rupp 
8104e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
8114e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
8124e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8134e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8144e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8158965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
816b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8172205254eSKarl Rupp 
8184e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
8194e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
8204e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8214e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8224e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8238965ea79SLois Curfman McInnes   }
8244e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8254e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8264e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
8288965ea79SLois Curfman McInnes }
8298965ea79SLois Curfman McInnes 
830ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
8318965ea79SLois Curfman McInnes {
83239ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
8348965ea79SLois Curfman McInnes 
8353a40ed3dSBarry Smith   PetscFunctionBegin;
83612c028f9SKris Buschelman   switch (op) {
837512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
83812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
83912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
84043674050SBarry Smith     MatCheckPreallocated(A,1);
8414e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
84212c028f9SKris Buschelman     break;
84312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
84443674050SBarry Smith     MatCheckPreallocated(A,1);
8454e0d8c25SBarry Smith     a->roworiented = flg;
8464e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
84712c028f9SKris Buschelman     break;
8484e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
84913fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
85012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
851290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
85212c028f9SKris Buschelman     break;
85312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8544e0d8c25SBarry Smith     a->donotstash = flg;
85512c028f9SKris Buschelman     break;
85677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
85777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8589a4540c5SBarry Smith   case MAT_HERMITIAN:
8599a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
860600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
8615d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
862290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
86377e54ba9SKris Buschelman     break;
86412c028f9SKris Buschelman   default:
865e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8663a40ed3dSBarry Smith   }
8673a40ed3dSBarry Smith   PetscFunctionReturn(0);
8688965ea79SLois Curfman McInnes }
8698965ea79SLois Curfman McInnes 
8708965ea79SLois Curfman McInnes 
871dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8725b2fa520SLois Curfman McInnes {
8735b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
8745b2fa520SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)mdn->A->data;
875bca11509SBarry Smith   const PetscScalar *l,*r;
876bca11509SBarry Smith   PetscScalar       x,*v;
877dfbe8321SBarry Smith   PetscErrorCode    ierr;
878d0f46423SBarry Smith   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8795b2fa520SLois Curfman McInnes 
8805b2fa520SLois Curfman McInnes   PetscFunctionBegin;
88172d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8825b2fa520SLois Curfman McInnes   if (ll) {
88372d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
884e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
885bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8865b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8875b2fa520SLois Curfman McInnes       x = l[i];
8885b2fa520SLois Curfman McInnes       v = mat->v + i;
8895b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8905b2fa520SLois Curfman McInnes     }
891bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
892efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8935b2fa520SLois Curfman McInnes   }
8945b2fa520SLois Curfman McInnes   if (rr) {
895175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
896e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
897ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
898ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
899bca11509SBarry Smith     ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
9005b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
9015b2fa520SLois Curfman McInnes       x = r[i];
9025b2fa520SLois Curfman McInnes       v = mat->v + i*m;
9032205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
9045b2fa520SLois Curfman McInnes     }
905bca11509SBarry Smith     ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
906efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
9075b2fa520SLois Curfman McInnes   }
9085b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
9095b2fa520SLois Curfman McInnes }
9105b2fa520SLois Curfman McInnes 
911dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
912096963f5SLois Curfman McInnes {
9133501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
9143501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
915dfbe8321SBarry Smith   PetscErrorCode ierr;
91613f74950SBarry Smith   PetscInt       i,j;
917329f5518SBarry Smith   PetscReal      sum = 0.0;
91887828ca2SBarry Smith   PetscScalar    *v  = mat->v;
9193501a2bdSLois Curfman McInnes 
9203a40ed3dSBarry Smith   PetscFunctionBegin;
9213501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
922064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9233501a2bdSLois Curfman McInnes   } else {
9243501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
925d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
926329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9273501a2bdSLois Curfman McInnes       }
928b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
9298f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
930dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9313a40ed3dSBarry Smith     } else if (type == NORM_1) {
932329f5518SBarry Smith       PetscReal *tmp,*tmp2;
933dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
93474ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
93574ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
936064f8208SBarry Smith       *nrm = 0.0;
9373501a2bdSLois Curfman McInnes       v    = mat->v;
938d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
939d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
94067e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9413501a2bdSLois Curfman McInnes         }
9423501a2bdSLois Curfman McInnes       }
943b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
944d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
945064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9463501a2bdSLois Curfman McInnes       }
9478627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
948d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9493a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
950329f5518SBarry Smith       PetscReal ntemp;
9513501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
952b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
953ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9543501a2bdSLois Curfman McInnes   }
9553a40ed3dSBarry Smith   PetscFunctionReturn(0);
9563501a2bdSLois Curfman McInnes }
9573501a2bdSLois Curfman McInnes 
958fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9593501a2bdSLois Curfman McInnes {
9603501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9613501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9623501a2bdSLois Curfman McInnes   Mat            B;
963d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9646849ba73SBarry Smith   PetscErrorCode ierr;
96513f74950SBarry Smith   PetscInt       j,i;
96687828ca2SBarry Smith   PetscScalar    *v;
9673501a2bdSLois Curfman McInnes 
9683a40ed3dSBarry Smith   PetscFunctionBegin;
969cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
970ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
971d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9727adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9730298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
974fc4dec0aSBarry Smith   } else {
975fc4dec0aSBarry Smith     B = *matout;
976fc4dec0aSBarry Smith   }
9773501a2bdSLois Curfman McInnes 
978d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
979785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9803501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9811acff37aSSatish Balay   for (j=0; j<n; j++) {
9823501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9833501a2bdSLois Curfman McInnes     v   += m;
9843501a2bdSLois Curfman McInnes   }
985606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9866d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9876d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
988cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9893501a2bdSLois Curfman McInnes     *matout = B;
9903501a2bdSLois Curfman McInnes   } else {
99128be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9923501a2bdSLois Curfman McInnes   }
9933a40ed3dSBarry Smith   PetscFunctionReturn(0);
994096963f5SLois Curfman McInnes }
995096963f5SLois Curfman McInnes 
99644cd7ae7SLois Curfman McInnes 
9976849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
998d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9998965ea79SLois Curfman McInnes 
10004994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
1001273d9f13SBarry Smith {
1002dfbe8321SBarry Smith   PetscErrorCode ierr;
1003273d9f13SBarry Smith 
1004273d9f13SBarry Smith   PetscFunctionBegin;
1005273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1006273d9f13SBarry Smith   PetscFunctionReturn(0);
1007273d9f13SBarry Smith }
1008273d9f13SBarry Smith 
1009488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
1010488007eeSBarry Smith {
1011488007eeSBarry Smith   PetscErrorCode ierr;
1012488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
1013488007eeSBarry Smith 
1014488007eeSBarry Smith   PetscFunctionBegin;
1015488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
1016a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1017488007eeSBarry Smith   PetscFunctionReturn(0);
1018488007eeSBarry Smith }
1019488007eeSBarry Smith 
10207087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
1021ba337c44SJed Brown {
1022ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1023ba337c44SJed Brown   PetscErrorCode ierr;
1024ba337c44SJed Brown 
1025ba337c44SJed Brown   PetscFunctionBegin;
1026ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
1027ba337c44SJed Brown   PetscFunctionReturn(0);
1028ba337c44SJed Brown }
1029ba337c44SJed Brown 
1030ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
1031ba337c44SJed Brown {
1032ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1033ba337c44SJed Brown   PetscErrorCode ierr;
1034ba337c44SJed Brown 
1035ba337c44SJed Brown   PetscFunctionBegin;
1036ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1037ba337c44SJed Brown   PetscFunctionReturn(0);
1038ba337c44SJed Brown }
1039ba337c44SJed Brown 
1040ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1041ba337c44SJed Brown {
1042ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1043ba337c44SJed Brown   PetscErrorCode ierr;
1044ba337c44SJed Brown 
1045ba337c44SJed Brown   PetscFunctionBegin;
1046ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1047ba337c44SJed Brown   PetscFunctionReturn(0);
1048ba337c44SJed Brown }
1049ba337c44SJed Brown 
105049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
105149a6ff4bSBarry Smith {
105249a6ff4bSBarry Smith   PetscErrorCode    ierr;
105349a6ff4bSBarry Smith   PetscScalar       *x;
105449a6ff4bSBarry Smith   const PetscScalar *a;
105549a6ff4bSBarry Smith   PetscInt          lda;
105649a6ff4bSBarry Smith 
105749a6ff4bSBarry Smith   PetscFunctionBegin;
105849a6ff4bSBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
105949a6ff4bSBarry Smith   ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr);
106049a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
106149a6ff4bSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
106249a6ff4bSBarry Smith   ierr = PetscMemcpy(x,a+col*lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
106349a6ff4bSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
106449a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
106549a6ff4bSBarry Smith   PetscFunctionReturn(0);
106649a6ff4bSBarry Smith }
106749a6ff4bSBarry Smith 
10680716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10690716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10700716a85fSBarry Smith {
10710716a85fSBarry Smith   PetscErrorCode ierr;
10720716a85fSBarry Smith   PetscInt       i,n;
10730716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10740716a85fSBarry Smith   PetscReal      *work;
10750716a85fSBarry Smith 
10760716a85fSBarry Smith   PetscFunctionBegin;
10770298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1078785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10790716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10800716a85fSBarry Smith   if (type == NORM_2) {
10810716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10820716a85fSBarry Smith   }
10830716a85fSBarry Smith   if (type == NORM_INFINITY) {
1084b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10850716a85fSBarry Smith   } else {
1086b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10870716a85fSBarry Smith   }
10880716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10890716a85fSBarry Smith   if (type == NORM_2) {
10908f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10910716a85fSBarry Smith   }
10920716a85fSBarry Smith   PetscFunctionReturn(0);
10930716a85fSBarry Smith }
10940716a85fSBarry Smith 
109573a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
109673a71a0fSBarry Smith {
109773a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
109873a71a0fSBarry Smith   PetscErrorCode ierr;
109973a71a0fSBarry Smith   PetscScalar    *a;
110073a71a0fSBarry Smith   PetscInt       m,n,i;
110173a71a0fSBarry Smith 
110273a71a0fSBarry Smith   PetscFunctionBegin;
110373a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
11048c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
110573a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
110673a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
110773a71a0fSBarry Smith   }
11088c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
110973a71a0fSBarry Smith   PetscFunctionReturn(0);
111073a71a0fSBarry Smith }
111173a71a0fSBarry Smith 
1112fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1113fd4e9aacSBarry Smith 
11143b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
11153b49f96aSBarry Smith {
11163b49f96aSBarry Smith   PetscFunctionBegin;
11173b49f96aSBarry Smith   *missing = PETSC_FALSE;
11183b49f96aSBarry Smith   PetscFunctionReturn(0);
11193b49f96aSBarry Smith }
11203b49f96aSBarry Smith 
1121cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat,Mat,MatReuse,PetscReal,Mat*);
1122cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat*);
1123cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1124cc48ffa7SToby Isaac 
11258965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
112609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
112709dc0095SBarry Smith                                         MatGetRow_MPIDense,
112809dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
112909dc0095SBarry Smith                                         MatMult_MPIDense,
113097304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
11317c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
11327c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
11338965ea79SLois Curfman McInnes                                         0,
113409dc0095SBarry Smith                                         0,
113509dc0095SBarry Smith                                         0,
113697304618SKris Buschelman                                 /* 10*/ 0,
113709dc0095SBarry Smith                                         0,
113809dc0095SBarry Smith                                         0,
113909dc0095SBarry Smith                                         0,
114009dc0095SBarry Smith                                         MatTranspose_MPIDense,
114197304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
11426e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
114309dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
11445b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
114509dc0095SBarry Smith                                         MatNorm_MPIDense,
114697304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
114709dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
114809dc0095SBarry Smith                                         MatSetOption_MPIDense,
114909dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1150d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1151919b68f7SBarry Smith                                         0,
115201b82886SBarry Smith                                         0,
115301b82886SBarry Smith                                         0,
115401b82886SBarry Smith                                         0,
11554994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1156273d9f13SBarry Smith                                         0,
115709dc0095SBarry Smith                                         0,
1158c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
11598c778c55SBarry Smith                                         0,
1160d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
116109dc0095SBarry Smith                                         0,
116209dc0095SBarry Smith                                         0,
116309dc0095SBarry Smith                                         0,
116409dc0095SBarry Smith                                         0,
1165d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11667dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
116709dc0095SBarry Smith                                         0,
116809dc0095SBarry Smith                                         MatGetValues_MPIDense,
116909dc0095SBarry Smith                                         0,
1170d519adbfSMatthew Knepley                                 /* 44*/ 0,
117109dc0095SBarry Smith                                         MatScale_MPIDense,
11727d68702bSBarry Smith                                         MatShift_Basic,
117309dc0095SBarry Smith                                         0,
117409dc0095SBarry Smith                                         0,
117573a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
117609dc0095SBarry Smith                                         0,
117709dc0095SBarry Smith                                         0,
117809dc0095SBarry Smith                                         0,
117909dc0095SBarry Smith                                         0,
1180d519adbfSMatthew Knepley                                 /* 54*/ 0,
118109dc0095SBarry Smith                                         0,
118209dc0095SBarry Smith                                         0,
118309dc0095SBarry Smith                                         0,
118409dc0095SBarry Smith                                         0,
11857dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1186b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1187b9b97703SBarry Smith                                         MatView_MPIDense,
1188357abbc8SBarry Smith                                         0,
118997304618SKris Buschelman                                         0,
1190d519adbfSMatthew Knepley                                 /* 64*/ 0,
119197304618SKris Buschelman                                         0,
119297304618SKris Buschelman                                         0,
119397304618SKris Buschelman                                         0,
119497304618SKris Buschelman                                         0,
1195d519adbfSMatthew Knepley                                 /* 69*/ 0,
119697304618SKris Buschelman                                         0,
119797304618SKris Buschelman                                         0,
119897304618SKris Buschelman                                         0,
119997304618SKris Buschelman                                         0,
1200d519adbfSMatthew Knepley                                 /* 74*/ 0,
120197304618SKris Buschelman                                         0,
120297304618SKris Buschelman                                         0,
120397304618SKris Buschelman                                         0,
120497304618SKris Buschelman                                         0,
1205d519adbfSMatthew Knepley                                 /* 79*/ 0,
120697304618SKris Buschelman                                         0,
120797304618SKris Buschelman                                         0,
120897304618SKris Buschelman                                         0,
12095bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1210865e5f61SKris Buschelman                                         0,
1211865e5f61SKris Buschelman                                         0,
1212865e5f61SKris Buschelman                                         0,
1213865e5f61SKris Buschelman                                         0,
1214865e5f61SKris Buschelman                                         0,
12159775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1216320f2790SHong Zhang                                 /* 89*/ MatMatMult_MPIDense_MPIDense,
1217320f2790SHong Zhang                                         MatMatMultSymbolic_MPIDense_MPIDense,
12189775878aSHong Zhang #else
12199775878aSHong Zhang                                 /* 89*/ 0,
1220865e5f61SKris Buschelman                                         0,
12219775878aSHong Zhang #endif
1222fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
12232fbe02b9SBarry Smith                                         0,
1224ba337c44SJed Brown                                         0,
1225d519adbfSMatthew Knepley                                 /* 94*/ 0,
1226cc48ffa7SToby Isaac                                         MatMatTransposeMult_MPIDense_MPIDense,
1227cc48ffa7SToby Isaac                                         MatMatTransposeMultSymbolic_MPIDense_MPIDense,
1228cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1229ba337c44SJed Brown                                         0,
1230ba337c44SJed Brown                                 /* 99*/ 0,
1231ba337c44SJed Brown                                         0,
1232ba337c44SJed Brown                                         0,
1233ba337c44SJed Brown                                         MatConjugate_MPIDense,
1234ba337c44SJed Brown                                         0,
1235ba337c44SJed Brown                                 /*104*/ 0,
1236ba337c44SJed Brown                                         MatRealPart_MPIDense,
1237ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
123886d161a7SShri Abhyankar                                         0,
123986d161a7SShri Abhyankar                                         0,
124086d161a7SShri Abhyankar                                 /*109*/ 0,
124186d161a7SShri Abhyankar                                         0,
124286d161a7SShri Abhyankar                                         0,
124349a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
12443b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
124586d161a7SShri Abhyankar                                 /*114*/ 0,
124686d161a7SShri Abhyankar                                         0,
124786d161a7SShri Abhyankar                                         0,
124886d161a7SShri Abhyankar                                         0,
124986d161a7SShri Abhyankar                                         0,
125086d161a7SShri Abhyankar                                 /*119*/ 0,
125186d161a7SShri Abhyankar                                         0,
125286d161a7SShri Abhyankar                                         0,
12530716a85fSBarry Smith                                         0,
12540716a85fSBarry Smith                                         0,
12550716a85fSBarry Smith                                 /*124*/ 0,
12563964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
12573964eb88SJed Brown                                         0,
12583964eb88SJed Brown                                         0,
12593964eb88SJed Brown                                         0,
12603964eb88SJed Brown                                 /*129*/ 0,
1261cb20be35SHong Zhang                                         MatTransposeMatMult_MPIDense_MPIDense,
1262cb20be35SHong Zhang                                         MatTransposeMatMultSymbolic_MPIDense_MPIDense,
1263cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
12643964eb88SJed Brown                                         0,
12653964eb88SJed Brown                                 /*134*/ 0,
12663964eb88SJed Brown                                         0,
12673964eb88SJed Brown                                         0,
12683964eb88SJed Brown                                         0,
12693964eb88SJed Brown                                         0,
12703964eb88SJed Brown                                 /*139*/ 0,
1271f9426fe0SMark Adams                                         0,
127294e2cb23SJakub Kruzik                                         0,
127394e2cb23SJakub Kruzik                                         0,
127494e2cb23SJakub Kruzik                                         0,
12751ae5eee8SJakub Kruzik                                 /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIDense
1276ba337c44SJed Brown };
12778965ea79SLois Curfman McInnes 
12787087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1279a23d5eceSKris Buschelman {
1280a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1281dfbe8321SBarry Smith   PetscErrorCode ierr;
1282a23d5eceSKris Buschelman 
1283a23d5eceSKris Buschelman   PetscFunctionBegin;
1284430ada49SBarry Smith   if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated");
1285a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1286a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1287a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1288a23d5eceSKris Buschelman 
1289a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
129034ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
129134ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
129234ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
129334ef9618SShri Abhyankar 
1294f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1295d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12965c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12975c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12983bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1299a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1300a23d5eceSKris Buschelman }
1301a23d5eceSKris Buschelman 
130265b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1303cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
13048baccfbdSHong Zhang {
13058ea901baSHong Zhang   Mat            mat_elemental;
13068ea901baSHong Zhang   PetscErrorCode ierr;
130732d7a744SHong Zhang   PetscScalar    *v;
130832d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
13098ea901baSHong Zhang 
13108baccfbdSHong Zhang   PetscFunctionBegin;
1311378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1312378336b6SHong Zhang     mat_elemental = *newmat;
1313378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1314378336b6SHong Zhang   } else {
1315378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1316378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1317378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1318378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
131932d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1320378336b6SHong Zhang   }
1321378336b6SHong Zhang 
132232d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
132332d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
132432d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
13258ea901baSHong Zhang 
13268ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
132732d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
132832d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
13298ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13308ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
133132d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
133232d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
13338ea901baSHong Zhang 
1334511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
133528be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
13368ea901baSHong Zhang   } else {
13378ea901baSHong Zhang     *newmat = mat_elemental;
13388ea901baSHong Zhang   }
13398baccfbdSHong Zhang   PetscFunctionReturn(0);
13408baccfbdSHong Zhang }
134165b80a83SHong Zhang #endif
13428baccfbdSHong Zhang 
1343af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
134486aefd0dSHong Zhang {
134586aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
134686aefd0dSHong Zhang   PetscErrorCode ierr;
134786aefd0dSHong Zhang 
134886aefd0dSHong Zhang   PetscFunctionBegin;
134986aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
135086aefd0dSHong Zhang   PetscFunctionReturn(0);
135186aefd0dSHong Zhang }
135286aefd0dSHong Zhang 
1353af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
135486aefd0dSHong Zhang {
135586aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
135686aefd0dSHong Zhang   PetscErrorCode ierr;
135786aefd0dSHong Zhang 
135886aefd0dSHong Zhang   PetscFunctionBegin;
135986aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
136086aefd0dSHong Zhang   PetscFunctionReturn(0);
136186aefd0dSHong Zhang }
136286aefd0dSHong Zhang 
136394e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
136494e2cb23SJakub Kruzik {
136594e2cb23SJakub Kruzik   PetscErrorCode ierr;
136694e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
136794e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
136894e2cb23SJakub Kruzik 
136994e2cb23SJakub Kruzik   PetscFunctionBegin;
137094e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
137194e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
137294e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
137394e2cb23SJakub Kruzik     PetscInt sum;
137494e2cb23SJakub Kruzik 
137594e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
137694e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
137794e2cb23SJakub Kruzik     }
137894e2cb23SJakub Kruzik     /* Check sum(n) = N */
137994e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
138094e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
138194e2cb23SJakub Kruzik 
138294e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
138394e2cb23SJakub Kruzik   }
138494e2cb23SJakub Kruzik 
138594e2cb23SJakub Kruzik   /* numeric phase */
138694e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
138794e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
138894e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
138994e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
139094e2cb23SJakub Kruzik   PetscFunctionReturn(0);
139194e2cb23SJakub Kruzik }
139294e2cb23SJakub Kruzik 
13938cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1394273d9f13SBarry Smith {
1395273d9f13SBarry Smith   Mat_MPIDense   *a;
1396dfbe8321SBarry Smith   PetscErrorCode ierr;
1397273d9f13SBarry Smith 
1398273d9f13SBarry Smith   PetscFunctionBegin;
1399b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1400b0a32e0cSBarry Smith   mat->data = (void*)a;
1401273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1402273d9f13SBarry Smith 
1403273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1404ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1405ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1406273d9f13SBarry Smith 
1407273d9f13SBarry Smith   /* build cache for off array entries formed */
1408273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
14092205254eSKarl Rupp 
1410ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1411273d9f13SBarry Smith 
1412273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1413273d9f13SBarry Smith   a->lvec        = 0;
1414273d9f13SBarry Smith   a->Mvctx       = 0;
1415273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1416273d9f13SBarry Smith 
141749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1418bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
14198572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
14208572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
14218572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
1422d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1423d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
14248baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14258baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
14268baccfbdSHong Zhang #endif
1427bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1428bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1429bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1430bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
14318949adfdSHong Zhang 
14328949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
14338949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
14348949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1435af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1436af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
143738aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1438273d9f13SBarry Smith   PetscFunctionReturn(0);
1439273d9f13SBarry Smith }
1440273d9f13SBarry Smith 
1441209238afSKris Buschelman /*MC
1442002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1443209238afSKris Buschelman 
1444209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1445209238afSKris Buschelman    and MATMPIDENSE otherwise.
1446209238afSKris Buschelman 
1447209238afSKris Buschelman    Options Database Keys:
1448209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1449209238afSKris Buschelman 
1450209238afSKris Buschelman   Level: beginner
1451209238afSKris Buschelman 
145201b82886SBarry Smith 
1453209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1454209238afSKris Buschelman M*/
1455209238afSKris Buschelman 
1456273d9f13SBarry Smith /*@C
1457273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1458273d9f13SBarry Smith 
1459273d9f13SBarry Smith    Not collective
1460273d9f13SBarry Smith 
1461273d9f13SBarry Smith    Input Parameters:
14621c4f3114SJed Brown .  B - the matrix
14630298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1464273d9f13SBarry Smith    to control all matrix memory allocation.
1465273d9f13SBarry Smith 
1466273d9f13SBarry Smith    Notes:
1467273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1468273d9f13SBarry Smith    storage by columns.
1469273d9f13SBarry Smith 
1470273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1471273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
14720298fd71SBarry Smith    set data=NULL.
1473273d9f13SBarry Smith 
1474273d9f13SBarry Smith    Level: intermediate
1475273d9f13SBarry Smith 
1476273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1477273d9f13SBarry Smith @*/
14781c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1479273d9f13SBarry Smith {
14804ac538c5SBarry Smith   PetscErrorCode ierr;
1481273d9f13SBarry Smith 
1482273d9f13SBarry Smith   PetscFunctionBegin;
14831c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1484273d9f13SBarry Smith   PetscFunctionReturn(0);
1485273d9f13SBarry Smith }
1486273d9f13SBarry Smith 
1487d3042a70SBarry Smith /*@
1488d3042a70SBarry Smith    MatDensePlaceArray - Allows one to replace the array in a dense array with an
1489d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1490d3042a70SBarry Smith    into a matrix
1491d3042a70SBarry Smith 
1492d3042a70SBarry Smith    Not Collective
1493d3042a70SBarry Smith 
1494d3042a70SBarry Smith    Input Parameters:
1495d3042a70SBarry Smith +  mat - the matrix
1496d3042a70SBarry Smith -  array - the array in column major order
1497d3042a70SBarry Smith 
1498d3042a70SBarry Smith    Notes:
1499d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1500d3042a70SBarry Smith    freed when the matrix is destroyed.
1501d3042a70SBarry Smith 
1502d3042a70SBarry Smith    Level: developer
1503d3042a70SBarry Smith 
1504d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1505d3042a70SBarry Smith 
1506d3042a70SBarry Smith @*/
1507d3042a70SBarry Smith PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar array[])
1508d3042a70SBarry Smith {
1509d3042a70SBarry Smith   PetscErrorCode ierr;
1510d3042a70SBarry Smith   PetscFunctionBegin;
1511d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1512d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1513d3042a70SBarry Smith   PetscFunctionReturn(0);
1514d3042a70SBarry Smith }
1515d3042a70SBarry Smith 
1516d3042a70SBarry Smith /*@
1517d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1518d3042a70SBarry Smith 
1519d3042a70SBarry Smith    Not Collective
1520d3042a70SBarry Smith 
1521d3042a70SBarry Smith    Input Parameters:
1522d3042a70SBarry Smith .  mat - the matrix
1523d3042a70SBarry Smith 
1524d3042a70SBarry Smith    Notes:
1525d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1526d3042a70SBarry Smith 
1527d3042a70SBarry Smith    Level: developer
1528d3042a70SBarry Smith 
1529d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1530d3042a70SBarry Smith 
1531d3042a70SBarry Smith @*/
1532d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1533d3042a70SBarry Smith {
1534d3042a70SBarry Smith   PetscErrorCode ierr;
1535d3042a70SBarry Smith   PetscFunctionBegin;
1536d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1537d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1538d3042a70SBarry Smith   PetscFunctionReturn(0);
1539d3042a70SBarry Smith }
1540d3042a70SBarry Smith 
15418965ea79SLois Curfman McInnes /*@C
154269b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
15438965ea79SLois Curfman McInnes 
1544*d083f849SBarry Smith    Collective
1545db81eaa0SLois Curfman McInnes 
15468965ea79SLois Curfman McInnes    Input Parameters:
1547db81eaa0SLois Curfman McInnes +  comm - MPI communicator
15488965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1549db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
15508965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1551db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
15526cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1553dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
15548965ea79SLois Curfman McInnes 
15558965ea79SLois Curfman McInnes    Output Parameter:
1556477f1c0bSLois Curfman McInnes .  A - the matrix
15578965ea79SLois Curfman McInnes 
1558b259b22eSLois Curfman McInnes    Notes:
155939ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
156039ddd567SLois Curfman McInnes    storage by columns.
15618965ea79SLois Curfman McInnes 
156218f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
156318f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
15646cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
156518f449edSLois Curfman McInnes 
15668965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
15678965ea79SLois Curfman McInnes    (possibly both).
15688965ea79SLois Curfman McInnes 
1569027ccd11SLois Curfman McInnes    Level: intermediate
1570027ccd11SLois Curfman McInnes 
157139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
15728965ea79SLois Curfman McInnes @*/
157369b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
15748965ea79SLois Curfman McInnes {
15756849ba73SBarry Smith   PetscErrorCode ierr;
157613f74950SBarry Smith   PetscMPIInt    size;
15778965ea79SLois Curfman McInnes 
15783a40ed3dSBarry Smith   PetscFunctionBegin;
1579f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1580f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1581273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1582273d9f13SBarry Smith   if (size > 1) {
1583273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1584273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15856cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
15866cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
15876cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
15886cfe35ddSJose E. Roman     }
1589273d9f13SBarry Smith   } else {
1590273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1591273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15928c469469SLois Curfman McInnes   }
15933a40ed3dSBarry Smith   PetscFunctionReturn(0);
15948965ea79SLois Curfman McInnes }
15958965ea79SLois Curfman McInnes 
15966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
15978965ea79SLois Curfman McInnes {
15988965ea79SLois Curfman McInnes   Mat            mat;
15993501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1600dfbe8321SBarry Smith   PetscErrorCode ierr;
16018965ea79SLois Curfman McInnes 
16023a40ed3dSBarry Smith   PetscFunctionBegin;
16038965ea79SLois Curfman McInnes   *newmat = 0;
1604ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1605d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
16067adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1607834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
16085aa7edbeSHong Zhang 
1609d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1610c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1611273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
16128965ea79SLois Curfman McInnes 
16138965ea79SLois Curfman McInnes   a->size         = oldmat->size;
16148965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1615e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1616b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
16173782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1618e04c1aa4SHong Zhang 
16191e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
16201e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
16218965ea79SLois Curfman McInnes 
1622329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
16235609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
16243bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
162501b82886SBarry Smith 
16268965ea79SLois Curfman McInnes   *newmat = mat;
16273a40ed3dSBarry Smith   PetscFunctionReturn(0);
16288965ea79SLois Curfman McInnes }
16298965ea79SLois Curfman McInnes 
16309d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat)
163186d161a7SShri Abhyankar {
163286d161a7SShri Abhyankar   PetscErrorCode ierr;
163386d161a7SShri Abhyankar   PetscMPIInt    rank,size;
163474c13d95SBarry Smith   const PetscInt *rowners;
163574c13d95SBarry Smith   PetscInt       i,m,n,nz,j,mMax;
163686d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
16379d36ed5fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)newmat->data;
163886d161a7SShri Abhyankar 
163986d161a7SShri Abhyankar   PetscFunctionBegin;
164086d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
164186d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
164286d161a7SShri Abhyankar 
164374c13d95SBarry Smith   /* determine ownership of rows and columns */
164474c13d95SBarry Smith   m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n;
164574c13d95SBarry Smith   n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n;
164686d161a7SShri Abhyankar 
164774c13d95SBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1648430ada49SBarry Smith   if (!a->A) {
16490298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
16509d36ed5fSBarry Smith   }
16518c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
165249467e7dSBarry Smith   ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr);
165374c13d95SBarry Smith   ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr);
1654396e826eSBarry Smith   ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr);
165586d161a7SShri Abhyankar   if (!rank) {
16569d36ed5fSBarry Smith     ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr);
165786d161a7SShri Abhyankar 
165886d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
16599860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,m*N,NULL,PETSC_SCALAR);CHKERRQ(ierr);
166086d161a7SShri Abhyankar 
166186d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
166286d161a7SShri Abhyankar     vals_ptr = vals;
166386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
166486d161a7SShri Abhyankar       for (j=0; j<N; j++) {
166586d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
166686d161a7SShri Abhyankar       }
166786d161a7SShri Abhyankar     }
166886d161a7SShri Abhyankar 
166986d161a7SShri Abhyankar     /* read in other processors and ship out */
167086d161a7SShri Abhyankar     for (i=1; i<size; i++) {
167186d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
16729860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
1673a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
167486d161a7SShri Abhyankar     }
167586d161a7SShri Abhyankar   } else {
167686d161a7SShri Abhyankar     /* receive numeric values */
1677785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
167886d161a7SShri Abhyankar 
167986d161a7SShri Abhyankar     /* receive message of values*/
1680a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
168186d161a7SShri Abhyankar 
168286d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
168386d161a7SShri Abhyankar     vals_ptr = vals;
168486d161a7SShri Abhyankar     for (i=0; i<m; i++) {
168586d161a7SShri Abhyankar       for (j=0; j<N; j++) {
168686d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
168786d161a7SShri Abhyankar       }
168886d161a7SShri Abhyankar     }
168986d161a7SShri Abhyankar   }
16908c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
169186d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
169286d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
169386d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
169486d161a7SShri Abhyankar   PetscFunctionReturn(0);
169586d161a7SShri Abhyankar }
169686d161a7SShri Abhyankar 
1697112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
169886d161a7SShri Abhyankar {
1699dfdea288SBarry Smith   Mat_MPIDense   *a;
170086d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1701ce94432eSBarry Smith   MPI_Comm       comm;
170286d161a7SShri Abhyankar   MPI_Status     status;
170349467e7dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz;
170486d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
170549467e7dSBarry Smith   PetscInt       *ourlens,*procsnz = 0,jj,*mycols,*smycols;
17069d36ed5fSBarry Smith   PetscInt       i,nz,j,rstart,rend;
170786d161a7SShri Abhyankar   int            fd;
17087f489da9SVaclav Hapla   PetscBool      isbinary;
170986d161a7SShri Abhyankar   PetscErrorCode ierr;
171086d161a7SShri Abhyankar 
171186d161a7SShri Abhyankar   PetscFunctionBegin;
17127f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
17137f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
17147f489da9SVaclav Hapla 
1715c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1716c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1717ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
171886d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
171986d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
172086d161a7SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
17215872f025SBarry Smith   if (!rank) {
17229860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr);
172386d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
172486d161a7SShri Abhyankar   }
172586d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
172686d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
172786d161a7SShri Abhyankar 
172886d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
17299d36ed5fSBarry Smith   if (newmat->rmap->N < 0) newmat->rmap->N = M;
17309d36ed5fSBarry Smith   if (newmat->cmap->N < 0) newmat->cmap->N = N;
173186d161a7SShri Abhyankar 
17329d36ed5fSBarry Smith   if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N);
17339d36ed5fSBarry Smith   if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N);
173486d161a7SShri Abhyankar 
173586d161a7SShri Abhyankar   /*
173686d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
173786d161a7SShri Abhyankar   */
173886d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
17399d36ed5fSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
174086d161a7SShri Abhyankar     PetscFunctionReturn(0);
174186d161a7SShri Abhyankar   }
174286d161a7SShri Abhyankar 
174386d161a7SShri Abhyankar   /* determine ownership of all rows */
17442205254eSKarl Rupp   if (newmat->rmap->n < 0) {
17452205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
17462205254eSKarl Rupp   } else {
17472205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
17482205254eSKarl Rupp   }
174949467e7dSBarry Smith   if (newmat->cmap->n < 0) {
175049467e7dSBarry Smith     n = PETSC_DECIDE;
175149467e7dSBarry Smith   } else {
175249467e7dSBarry Smith     ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr);
175349467e7dSBarry Smith   }
175449467e7dSBarry Smith 
1755854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
175686d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
175786d161a7SShri Abhyankar   rowners[0] = 0;
175886d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
175986d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
176086d161a7SShri Abhyankar   }
176186d161a7SShri Abhyankar   rstart = rowners[rank];
176286d161a7SShri Abhyankar   rend   = rowners[rank+1];
176386d161a7SShri Abhyankar 
176486d161a7SShri Abhyankar   /* distribute row lengths to all processors */
176549467e7dSBarry Smith   ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr);
176686d161a7SShri Abhyankar   if (!rank) {
1767785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
17689860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
1769785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
177086d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
177186d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
177286d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
177386d161a7SShri Abhyankar   } else {
177486d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
177586d161a7SShri Abhyankar   }
177686d161a7SShri Abhyankar 
177786d161a7SShri Abhyankar   if (!rank) {
177886d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1779785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
178086d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
178186d161a7SShri Abhyankar     for (i=0; i<size; i++) {
178286d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
178386d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
178486d161a7SShri Abhyankar       }
178586d161a7SShri Abhyankar     }
178686d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
178786d161a7SShri Abhyankar 
178886d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
178986d161a7SShri Abhyankar     maxnz = 0;
179086d161a7SShri Abhyankar     for (i=0; i<size; i++) {
179186d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
179286d161a7SShri Abhyankar     }
1793785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
179486d161a7SShri Abhyankar 
179586d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
179686d161a7SShri Abhyankar     nz   = procsnz[0];
1797785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
17989860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
179986d161a7SShri Abhyankar 
180086d161a7SShri Abhyankar     /* read in every one elses and ship off */
180186d161a7SShri Abhyankar     for (i=1; i<size; i++) {
180286d161a7SShri Abhyankar       nz   = procsnz[i];
18039860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
180486d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
180586d161a7SShri Abhyankar     }
180686d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
180786d161a7SShri Abhyankar   } else {
180886d161a7SShri Abhyankar     /* determine buffer space needed for message */
180986d161a7SShri Abhyankar     nz = 0;
181086d161a7SShri Abhyankar     for (i=0; i<m; i++) {
181186d161a7SShri Abhyankar       nz += ourlens[i];
181286d161a7SShri Abhyankar     }
1813854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr);
181486d161a7SShri Abhyankar 
181586d161a7SShri Abhyankar     /* receive message of column indices*/
181686d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
181786d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
181886d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
181986d161a7SShri Abhyankar   }
182086d161a7SShri Abhyankar 
182149467e7dSBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1822dfdea288SBarry Smith   a = (Mat_MPIDense*)newmat->data;
1823430ada49SBarry Smith   if (!a->A) {
18240298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1825dfdea288SBarry Smith   }
182686d161a7SShri Abhyankar 
182786d161a7SShri Abhyankar   if (!rank) {
1828785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
182986d161a7SShri Abhyankar 
183086d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
183186d161a7SShri Abhyankar     nz   = procsnz[0];
18329860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
183386d161a7SShri Abhyankar 
183486d161a7SShri Abhyankar     /* insert into matrix */
183586d161a7SShri Abhyankar     jj      = rstart;
183686d161a7SShri Abhyankar     smycols = mycols;
183786d161a7SShri Abhyankar     svals   = vals;
183886d161a7SShri Abhyankar     for (i=0; i<m; i++) {
183986d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
184086d161a7SShri Abhyankar       smycols += ourlens[i];
184186d161a7SShri Abhyankar       svals   += ourlens[i];
184286d161a7SShri Abhyankar       jj++;
184386d161a7SShri Abhyankar     }
184486d161a7SShri Abhyankar 
184586d161a7SShri Abhyankar     /* read in other processors and ship out */
184686d161a7SShri Abhyankar     for (i=1; i<size; i++) {
184786d161a7SShri Abhyankar       nz   = procsnz[i];
18489860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
184986d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
185086d161a7SShri Abhyankar     }
185186d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
185286d161a7SShri Abhyankar   } else {
185386d161a7SShri Abhyankar     /* receive numeric values */
1854854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr);
185586d161a7SShri Abhyankar 
185686d161a7SShri Abhyankar     /* receive message of values*/
185786d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
185886d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
185986d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
186086d161a7SShri Abhyankar 
186186d161a7SShri Abhyankar     /* insert into matrix */
186286d161a7SShri Abhyankar     jj      = rstart;
186386d161a7SShri Abhyankar     smycols = mycols;
186486d161a7SShri Abhyankar     svals   = vals;
186586d161a7SShri Abhyankar     for (i=0; i<m; i++) {
186686d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
186786d161a7SShri Abhyankar       smycols += ourlens[i];
186886d161a7SShri Abhyankar       svals   += ourlens[i];
186986d161a7SShri Abhyankar       jj++;
187086d161a7SShri Abhyankar     }
187186d161a7SShri Abhyankar   }
187249467e7dSBarry Smith   ierr = PetscFree(ourlens);CHKERRQ(ierr);
187386d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
187486d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
187586d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
187686d161a7SShri Abhyankar 
187786d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
187886d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
187986d161a7SShri Abhyankar   PetscFunctionReturn(0);
188086d161a7SShri Abhyankar }
188186d161a7SShri Abhyankar 
1882ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
18836e4ee0c6SHong Zhang {
18846e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
18856e4ee0c6SHong Zhang   Mat            a,b;
1886ace3abfcSBarry Smith   PetscBool      flg;
18876e4ee0c6SHong Zhang   PetscErrorCode ierr;
188890ace30eSBarry Smith 
18896e4ee0c6SHong Zhang   PetscFunctionBegin;
18906e4ee0c6SHong Zhang   a    = matA->A;
18916e4ee0c6SHong Zhang   b    = matB->A;
18926e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1893b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18946e4ee0c6SHong Zhang   PetscFunctionReturn(0);
18956e4ee0c6SHong Zhang }
189690ace30eSBarry Smith 
1897baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
1898baa3c1c6SHong Zhang {
1899baa3c1c6SHong Zhang   PetscErrorCode        ierr;
1900baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1901baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
1902baa3c1c6SHong Zhang 
1903baa3c1c6SHong Zhang   PetscFunctionBegin;
1904c5ef1628SHong Zhang   ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr);
1905baa3c1c6SHong Zhang   ierr = (atb->destroy)(A);CHKERRQ(ierr);
1906baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
1907baa3c1c6SHong Zhang   PetscFunctionReturn(0);
1908baa3c1c6SHong Zhang }
1909baa3c1c6SHong Zhang 
1910cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
1911cc48ffa7SToby Isaac {
1912cc48ffa7SToby Isaac   PetscErrorCode        ierr;
1913cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1914cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
1915cc48ffa7SToby Isaac 
1916cc48ffa7SToby Isaac   PetscFunctionBegin;
1917cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
1918faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
1919cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
1920cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
1921cc48ffa7SToby Isaac   PetscFunctionReturn(0);
1922cc48ffa7SToby Isaac }
1923cc48ffa7SToby Isaac 
1924cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1925cb20be35SHong Zhang {
1926baa3c1c6SHong Zhang   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1927660d5466SHong Zhang   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1928baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
1929cb20be35SHong Zhang   PetscErrorCode ierr;
1930cb20be35SHong Zhang   MPI_Comm       comm;
1931d5017740SHong Zhang   PetscMPIInt    rank,size,*recvcounts=atb->recvcounts;
1932c5ef1628SHong Zhang   PetscScalar    *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf;
1933d5017740SHong Zhang   PetscInt       i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
1934660d5466SHong Zhang   PetscScalar    _DOne=1.0,_DZero=0.0;
1935adc7a786SHong Zhang   PetscBLASInt   am,an,bn,aN;
1936e68c0b26SHong Zhang   const PetscInt *ranges;
1937cb20be35SHong Zhang 
1938cb20be35SHong Zhang   PetscFunctionBegin;
1939cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1940cb20be35SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1941cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1942e68c0b26SHong Zhang 
1943c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
1944660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr);
1945660d5466SHong Zhang   ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr);
1946660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr);
1947adc7a786SHong Zhang   ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr);
1948adc7a786SHong Zhang   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN));
1949cb20be35SHong Zhang 
1950cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
1951c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
1952cb20be35SHong Zhang 
1953660d5466SHong Zhang   /* arrange atbarray into sendbuf */
1954cb20be35SHong Zhang   k = 0;
1955cb20be35SHong Zhang   for (proc=0; proc<size; proc++) {
1956baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
1957c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
1958cb20be35SHong Zhang     }
1959cb20be35SHong Zhang   }
1960c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
1961660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
19623462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
1963660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
1964cb20be35SHong Zhang   PetscFunctionReturn(0);
1965cb20be35SHong Zhang }
1966cb20be35SHong Zhang 
1967cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1968cb20be35SHong Zhang {
1969cb20be35SHong Zhang   PetscErrorCode        ierr;
1970baa3c1c6SHong Zhang   Mat                   Cdense;
1971cb20be35SHong Zhang   MPI_Comm              comm;
1972baa3c1c6SHong Zhang   PetscMPIInt           size;
1973660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
1974baa3c1c6SHong Zhang   Mat_MPIDense          *c;
1975baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
1976cb20be35SHong Zhang 
1977cb20be35SHong Zhang   PetscFunctionBegin;
1978baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1979cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
1980cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1981cb20be35SHong Zhang   }
1982cb20be35SHong Zhang 
1983baa3c1c6SHong Zhang   /* create matrix product Cdense */
1984baa3c1c6SHong Zhang   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
1985660d5466SHong Zhang   ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
1986baa3c1c6SHong Zhang   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
1987baa3c1c6SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
1988baa3c1c6SHong Zhang   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1989baa3c1c6SHong Zhang   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1990baa3c1c6SHong Zhang   *C   = Cdense;
1991baa3c1c6SHong Zhang 
1992baa3c1c6SHong Zhang   /* create data structure for reuse Cdense */
1993baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1994baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
1995660d5466SHong Zhang   cM = Cdense->rmap->N;
1996c5ef1628SHong Zhang   ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr);
1997baa3c1c6SHong Zhang 
1998baa3c1c6SHong Zhang   c                    = (Mat_MPIDense*)Cdense->data;
1999baa3c1c6SHong Zhang   c->atbdense          = atb;
2000baa3c1c6SHong Zhang   atb->destroy         = Cdense->ops->destroy;
2001baa3c1c6SHong Zhang   Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2002cb20be35SHong Zhang   PetscFunctionReturn(0);
2003cb20be35SHong Zhang }
2004cb20be35SHong Zhang 
2005cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
2006cb20be35SHong Zhang {
2007cb20be35SHong Zhang   PetscErrorCode ierr;
2008cb20be35SHong Zhang 
2009cb20be35SHong Zhang   PetscFunctionBegin;
2010cb20be35SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
2011cb20be35SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
2012cb20be35SHong Zhang   }
2013cb20be35SHong Zhang   ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
2014cb20be35SHong Zhang   PetscFunctionReturn(0);
2015cb20be35SHong Zhang }
2016320f2790SHong Zhang 
2017cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat *C)
2018cc48ffa7SToby Isaac {
2019cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2020cc48ffa7SToby Isaac   Mat                   Cdense;
2021cc48ffa7SToby Isaac   MPI_Comm              comm;
2022cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2023cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2024cc48ffa7SToby Isaac   Mat_MPIDense          *c;
2025cc48ffa7SToby Isaac   PetscMPIInt           tag;
2026faa55883SToby Isaac   const char            *algTypes[2] = {"allgatherv","cyclic"};
2027faa55883SToby Isaac   PetscInt              alg, nalg = 2;
2028cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
2029cc48ffa7SToby Isaac 
2030cc48ffa7SToby Isaac   PetscFunctionBegin;
2031cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2032faa55883SToby Isaac   alg = 0; /* default is allgatherv */
2033faa55883SToby Isaac   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
2034faa55883SToby Isaac   ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[0],&alg,NULL);CHKERRQ(ierr);
2035faa55883SToby Isaac   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2036cc48ffa7SToby Isaac   if (A->cmap->N != B->cmap->N) {
2037cc48ffa7SToby Isaac     SETERRQ2(comm,PETSC_ERR_ARG_SIZ,"Matrix global column dimensions are incompatible, A (%D) != B (%D)",A->cmap->N,B->cmap->N);
2038cc48ffa7SToby Isaac   }
2039cc48ffa7SToby Isaac 
2040cc48ffa7SToby Isaac   /* create matrix product Cdense */
2041cc48ffa7SToby Isaac   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
2042cc48ffa7SToby Isaac   ierr = MatSetSizes(Cdense,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
2043cc48ffa7SToby Isaac   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
2044cc48ffa7SToby Isaac   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
2045cc48ffa7SToby Isaac   ierr = PetscObjectGetNewTag((PetscObject)Cdense, &tag);CHKERRQ(ierr);
2046cc48ffa7SToby Isaac   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2047cc48ffa7SToby Isaac   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2048cc48ffa7SToby Isaac   *C   = Cdense;
2049cc48ffa7SToby Isaac 
2050cc48ffa7SToby Isaac   /* create data structure for reuse Cdense */
2051cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2052cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2053cc48ffa7SToby Isaac   abt->tag = tag;
2054faa55883SToby Isaac   abt->alg = alg;
2055faa55883SToby Isaac   switch (alg) {
2056faa55883SToby Isaac   case 1:
2057cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2058cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2059cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2060faa55883SToby Isaac     break;
2061faa55883SToby Isaac   default:
2062faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2063faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2064faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2065faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2066faa55883SToby Isaac     break;
2067faa55883SToby Isaac   }
2068cc48ffa7SToby Isaac 
2069cc48ffa7SToby Isaac   c                    = (Mat_MPIDense*)Cdense->data;
2070cc48ffa7SToby Isaac   c->abtdense          = abt;
2071cc48ffa7SToby Isaac   abt->destroy         = Cdense->ops->destroy;
2072cc48ffa7SToby Isaac   Cdense->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
2073cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2074cc48ffa7SToby Isaac }
2075cc48ffa7SToby Isaac 
2076faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2077cc48ffa7SToby Isaac {
2078cc48ffa7SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2079cc48ffa7SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
2080cc48ffa7SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
2081cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2082cc48ffa7SToby Isaac   PetscErrorCode ierr;
2083cc48ffa7SToby Isaac   MPI_Comm       comm;
2084cc48ffa7SToby Isaac   PetscMPIInt    rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2085ce36caf3SSatish Balay   PetscScalar    *sendbuf, *recvbuf=0, *carray;
2086cc48ffa7SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
2087cc48ffa7SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
2088cc48ffa7SToby Isaac   PetscBLASInt   cm, cn, ck;
2089cc48ffa7SToby Isaac   MPI_Request    reqs[2];
2090cc48ffa7SToby Isaac   const PetscInt *ranges;
2091cc48ffa7SToby Isaac 
2092cc48ffa7SToby Isaac   PetscFunctionBegin;
2093cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2094cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2095cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2096cc48ffa7SToby Isaac 
2097cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2098cc48ffa7SToby Isaac   bn = B->rmap->n;
2099cc48ffa7SToby Isaac   if (bseq->lda == bn) {
2100cc48ffa7SToby Isaac     sendbuf = bseq->v;
2101cc48ffa7SToby Isaac   } else {
2102cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2103cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2104cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2105cc48ffa7SToby Isaac         sendbuf[k] = bseq->v[i * bseq->lda + j];
2106cc48ffa7SToby Isaac       }
2107cc48ffa7SToby Isaac     }
2108cc48ffa7SToby Isaac   }
2109cc48ffa7SToby Isaac   if (size > 1) {
2110cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2111cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2112cc48ffa7SToby Isaac   } else {
2113cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2114cc48ffa7SToby Isaac   }
2115cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2116cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2117cc48ffa7SToby Isaac   recvisfrom = rank;
2118cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2119cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2120cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2121cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2122cc48ffa7SToby Isaac 
2123cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2124cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2125cc48ffa7SToby Isaac       sendsiz = cK * bn;
2126cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2127cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2128cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
2129cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
2130cc48ffa7SToby Isaac     }
2131cc48ffa7SToby Isaac 
2132cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2133cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
2134cc48ffa7SToby Isaac     carray = &cseq->v[cseq->lda * ranges[recvisfrom]];
2135cc48ffa7SToby Isaac     PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda));
2136cc48ffa7SToby Isaac 
2137cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2138cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2139cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
2140cc48ffa7SToby Isaac     }
2141cc48ffa7SToby Isaac     bn = nextbn;
2142cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2143cc48ffa7SToby Isaac     sendbuf = recvbuf;
2144cc48ffa7SToby Isaac   }
2145cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2146cc48ffa7SToby Isaac }
2147cc48ffa7SToby Isaac 
2148faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2149faa55883SToby Isaac {
2150faa55883SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2151faa55883SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
2152faa55883SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
2153faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2154faa55883SToby Isaac   PetscErrorCode ierr;
2155faa55883SToby Isaac   MPI_Comm       comm;
2156faa55883SToby Isaac   PetscMPIInt    rank,size;
2157faa55883SToby Isaac   PetscScalar    *sendbuf, *recvbuf;
2158faa55883SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
2159faa55883SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
2160faa55883SToby Isaac   PetscBLASInt   cm, cn, ck;
2161faa55883SToby Isaac 
2162faa55883SToby Isaac   PetscFunctionBegin;
2163faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2164faa55883SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2165faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2166faa55883SToby Isaac 
2167faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2168faa55883SToby Isaac   bn      = B->rmap->n;
2169faa55883SToby Isaac   sendbuf = abt->buf[0];
2170faa55883SToby Isaac   recvbuf = abt->buf[1];
2171faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2172faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2173faa55883SToby Isaac       sendbuf[k] = bseq->v[i * bseq->lda + j];
2174faa55883SToby Isaac     }
2175faa55883SToby Isaac   }
2176faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
2177faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2178faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2179faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
2180faa55883SToby Isaac   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda));
2181faa55883SToby Isaac   PetscFunctionReturn(0);
2182faa55883SToby Isaac }
2183faa55883SToby Isaac 
2184faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2185faa55883SToby Isaac {
2186faa55883SToby Isaac   Mat_MPIDense   *c=(Mat_MPIDense*)C->data;
2187faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2188faa55883SToby Isaac   PetscErrorCode ierr;
2189faa55883SToby Isaac 
2190faa55883SToby Isaac   PetscFunctionBegin;
2191faa55883SToby Isaac   switch (abt->alg) {
2192faa55883SToby Isaac   case 1:
2193faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2194faa55883SToby Isaac     break;
2195faa55883SToby Isaac   default:
2196faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2197faa55883SToby Isaac     break;
2198faa55883SToby Isaac   }
2199faa55883SToby Isaac   PetscFunctionReturn(0);
2200faa55883SToby Isaac }
2201faa55883SToby Isaac 
2202cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat A,Mat B, MatReuse scall, PetscReal fill, Mat *C)
2203cc48ffa7SToby Isaac {
2204cc48ffa7SToby Isaac   PetscErrorCode ierr;
2205cc48ffa7SToby Isaac 
2206cc48ffa7SToby Isaac   PetscFunctionBegin;
2207cc48ffa7SToby Isaac   if (scall == MAT_INITIAL_MATRIX) {
2208cc48ffa7SToby Isaac     ierr = MatMatTransposeMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
2209cc48ffa7SToby Isaac   }
2210cc48ffa7SToby Isaac   ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
2211cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2212cc48ffa7SToby Isaac }
2213cc48ffa7SToby Isaac 
2214320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
2215320f2790SHong Zhang {
2216320f2790SHong Zhang   PetscErrorCode   ierr;
2217320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
2218320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
2219320f2790SHong Zhang 
2220320f2790SHong Zhang   PetscFunctionBegin;
2221320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2222320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2223320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2224320f2790SHong Zhang 
2225320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
2226320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2227320f2790SHong Zhang   PetscFunctionReturn(0);
2228320f2790SHong Zhang }
2229320f2790SHong Zhang 
22305242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2231320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2232320f2790SHong Zhang {
2233320f2790SHong Zhang   PetscErrorCode   ierr;
2234320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
2235320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
2236320f2790SHong Zhang 
2237320f2790SHong Zhang   PetscFunctionBegin;
2238de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2239de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
2240320f2790SHong Zhang   ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2241de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2242320f2790SHong Zhang   PetscFunctionReturn(0);
2243320f2790SHong Zhang }
2244320f2790SHong Zhang 
2245320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
2246320f2790SHong Zhang {
2247320f2790SHong Zhang   PetscErrorCode   ierr;
2248320f2790SHong Zhang   Mat              Ae,Be,Ce;
2249320f2790SHong Zhang   Mat_MPIDense     *c;
2250320f2790SHong Zhang   Mat_MatMultDense *ab;
2251320f2790SHong Zhang 
2252320f2790SHong Zhang   PetscFunctionBegin;
2253320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2254378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2255320f2790SHong Zhang   }
2256320f2790SHong Zhang 
2257320f2790SHong Zhang   /* convert A and B to Elemental matrices Ae and Be */
2258320f2790SHong Zhang   ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr);
2259320f2790SHong Zhang   ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr);
2260320f2790SHong Zhang 
2261320f2790SHong Zhang   /* Ce = Ae*Be */
2262320f2790SHong Zhang   ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr);
2263320f2790SHong Zhang   ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr);
2264320f2790SHong Zhang 
2265320f2790SHong Zhang   /* convert Ce to C */
2266320f2790SHong Zhang   ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr);
2267320f2790SHong Zhang 
2268320f2790SHong Zhang   /* create data structure for reuse Cdense */
2269320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
2270320f2790SHong Zhang   c                  = (Mat_MPIDense*)(*C)->data;
2271320f2790SHong Zhang   c->abdense         = ab;
2272320f2790SHong Zhang 
2273320f2790SHong Zhang   ab->Ae             = Ae;
2274320f2790SHong Zhang   ab->Be             = Be;
2275320f2790SHong Zhang   ab->Ce             = Ce;
2276320f2790SHong Zhang   ab->destroy        = (*C)->ops->destroy;
2277320f2790SHong Zhang   (*C)->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
22789775878aSHong Zhang   (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
2279320f2790SHong Zhang   PetscFunctionReturn(0);
2280320f2790SHong Zhang }
2281320f2790SHong Zhang 
2282150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
2283320f2790SHong Zhang {
2284320f2790SHong Zhang   PetscErrorCode ierr;
2285320f2790SHong Zhang 
2286320f2790SHong Zhang   PetscFunctionBegin;
2287320f2790SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */
228857299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
2289320f2790SHong Zhang     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
229057299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
2291320f2790SHong Zhang   } else {
229257299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
2293320f2790SHong Zhang     ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
229457299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
2295320f2790SHong Zhang   }
2296320f2790SHong Zhang   PetscFunctionReturn(0);
2297320f2790SHong Zhang }
22985242a7b1SHong Zhang #endif
229986aefd0dSHong Zhang 
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