1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 704fea9ffSBarry Smith 889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg; 11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d; 12eae6fb2eSBarry Smith #endif 138965ea79SLois Curfman McInnes 14ba8c8a56SBarry Smith #undef __FUNCT__ 15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 16ab92ecdeSBarry Smith /*@ 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 19ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Input Parameter: 22ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 23ab92ecdeSBarry Smith 24ab92ecdeSBarry Smith Output Parameter: 25ab92ecdeSBarry Smith . B - the inner matrix 26ab92ecdeSBarry Smith 278e6c10adSSatish Balay Level: intermediate 288e6c10adSSatish Balay 29ab92ecdeSBarry Smith @*/ 30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 31ab92ecdeSBarry Smith { 32ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 33ab92ecdeSBarry Smith PetscErrorCode ierr; 34ab92ecdeSBarry Smith PetscTruth flg; 35ab92ecdeSBarry Smith 36ab92ecdeSBarry Smith PetscFunctionBegin; 37ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 38ab92ecdeSBarry Smith if (flg) { 39ab92ecdeSBarry Smith *B = mat->A; 40ab92ecdeSBarry Smith } else { 41ab92ecdeSBarry Smith *B = A; 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith PetscFunctionReturn(0); 44ab92ecdeSBarry Smith } 45ab92ecdeSBarry Smith 46ab92ecdeSBarry Smith #undef __FUNCT__ 47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 49ba8c8a56SBarry Smith { 50ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 51ba8c8a56SBarry Smith PetscErrorCode ierr; 52*d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 56ba8c8a56SBarry Smith lrow = row - rstart; 57ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith #undef __FUNCT__ 62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 64ba8c8a56SBarry Smith { 65ba8c8a56SBarry Smith PetscErrorCode ierr; 66ba8c8a56SBarry Smith 67ba8c8a56SBarry Smith PetscFunctionBegin; 68ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 69ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 70ba8c8a56SBarry Smith PetscFunctionReturn(0); 71ba8c8a56SBarry Smith } 72ba8c8a56SBarry Smith 730de54da6SSatish Balay EXTERN_C_BEGIN 744a2ae208SSatish Balay #undef __FUNCT__ 754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80*d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8187828ca2SBarry Smith PetscScalar *array; 820de54da6SSatish Balay MPI_Comm comm; 830de54da6SSatish Balay 840de54da6SSatish Balay PetscFunctionBegin; 85*d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 860de54da6SSatish Balay 870de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 880de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 890de54da6SSatish Balay 900de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 910de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 92f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 93f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 947adad957SLisandro Dalcin ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 955c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 960de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 970de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 990de54da6SSatish Balay 1000de54da6SSatish Balay *iscopy = PETSC_TRUE; 1010de54da6SSatish Balay PetscFunctionReturn(0); 1020de54da6SSatish Balay } 1030de54da6SSatish Balay EXTERN_C_END 1040de54da6SSatish Balay 1054a2ae208SSatish Balay #undef __FUNCT__ 1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1088965ea79SLois Curfman McInnes { 10939b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110dfbe8321SBarry Smith PetscErrorCode ierr; 111*d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 112273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1138965ea79SLois Curfman McInnes 1143a40ed3dSBarry Smith PetscFunctionBegin; 1158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1165ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 117*d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1188965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1198965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12039b7565bSBarry Smith if (roworiented) { 12139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1223a40ed3dSBarry Smith } else { 1238965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1245ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 125*d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12739b7565bSBarry Smith } 1288965ea79SLois Curfman McInnes } 1293a40ed3dSBarry Smith } else { 1303782ba37SSatish Balay if (!A->donotstash) { 13139b7565bSBarry Smith if (roworiented) { 1328798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 133d36fbae8SSatish Balay } else { 1348798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 13539b7565bSBarry Smith } 136b49de8d1SLois Curfman McInnes } 137b49de8d1SLois Curfman McInnes } 1383782ba37SSatish Balay } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 1424a2ae208SSatish Balay #undef __FUNCT__ 1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 145b49de8d1SLois Curfman McInnes { 146b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 147dfbe8321SBarry Smith PetscErrorCode ierr; 148*d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 149b49de8d1SLois Curfman McInnes 1503a40ed3dSBarry Smith PetscFunctionBegin; 151b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 15297e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 153*d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 154b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 155b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 156b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15797e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 158*d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) { 15929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 160a8c6a408SBarry Smith } 161b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 162b49de8d1SLois Curfman McInnes } 163a8c6a408SBarry Smith } else { 16429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1658965ea79SLois Curfman McInnes } 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 173ff14e315SSatish Balay { 174ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 175dfbe8321SBarry Smith PetscErrorCode ierr; 176ff14e315SSatish Balay 1773a40ed3dSBarry Smith PetscFunctionBegin; 178ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1793a40ed3dSBarry Smith PetscFunctionReturn(0); 180ff14e315SSatish Balay } 181ff14e315SSatish Balay 1824a2ae208SSatish Balay #undef __FUNCT__ 1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 185ca3fa75bSLois Curfman McInnes { 186ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 187ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1886849ba73SBarry Smith PetscErrorCode ierr; 18913f74950SBarry Smith PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 19087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 191ca3fa75bSLois Curfman McInnes Mat newmat; 192ca3fa75bSLois Curfman McInnes 193ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 194ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 195ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 196b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 197b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2007eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2017eba5e9cSLois Curfman McInnes original matrix! */ 202ca3fa75bSLois Curfman McInnes 203ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2047eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 205ca3fa75bSLois Curfman McInnes 206ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 207ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 20829bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2097eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 210ca3fa75bSLois Curfman McInnes newmat = *B; 211ca3fa75bSLois Curfman McInnes } else { 212ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2137adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 214f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 2157adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 216878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 217ca3fa75bSLois Curfman McInnes } 218ca3fa75bSLois Curfman McInnes 219ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 220ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 221ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 224ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 225ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2267eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 227ca3fa75bSLois Curfman McInnes } 228ca3fa75bSLois Curfman McInnes } 229ca3fa75bSLois Curfman McInnes 230ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 231ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233ca3fa75bSLois Curfman McInnes 234ca3fa75bSLois Curfman McInnes /* Free work space */ 235ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 236ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 237ca3fa75bSLois Curfman McInnes *B = newmat; 238ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes 2414a2ae208SSatish Balay #undef __FUNCT__ 2424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 243dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 244ff14e315SSatish Balay { 2453a40ed3dSBarry Smith PetscFunctionBegin; 2463a40ed3dSBarry Smith PetscFunctionReturn(0); 247ff14e315SSatish Balay } 248ff14e315SSatish Balay 2494a2ae208SSatish Balay #undef __FUNCT__ 2504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 251dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2528965ea79SLois Curfman McInnes { 25339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2547adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mat)->comm; 255dfbe8321SBarry Smith PetscErrorCode ierr; 25613f74950SBarry Smith PetscInt nstash,reallocs; 2578965ea79SLois Curfman McInnes InsertMode addv; 2588965ea79SLois Curfman McInnes 2593a40ed3dSBarry Smith PetscFunctionBegin; 2608965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 261ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2627056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 26329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2648965ea79SLois Curfman McInnes } 265e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2668965ea79SLois Curfman McInnes 267*d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2688798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 269ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2703a40ed3dSBarry Smith PetscFunctionReturn(0); 2718965ea79SLois Curfman McInnes } 2728965ea79SLois Curfman McInnes 2734a2ae208SSatish Balay #undef __FUNCT__ 2744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 275dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2768965ea79SLois Curfman McInnes { 27739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2786849ba73SBarry Smith PetscErrorCode ierr; 27913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 28013f74950SBarry Smith PetscMPIInt n; 28187828ca2SBarry Smith PetscScalar *val; 282e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2838965ea79SLois Curfman McInnes 2843a40ed3dSBarry Smith PetscFunctionBegin; 2858965ea79SLois Curfman McInnes /* wait on receives */ 2867ef1d9bdSSatish Balay while (1) { 2878798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2887ef1d9bdSSatish Balay if (!flg) break; 2898965ea79SLois Curfman McInnes 2907ef1d9bdSSatish Balay for (i=0; i<n;) { 2917ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2927ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2937ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2947ef1d9bdSSatish Balay else ncols = n-i; 2957ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2967ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2977ef1d9bdSSatish Balay i = j; 2988965ea79SLois Curfman McInnes } 2997ef1d9bdSSatish Balay } 3008798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3018965ea79SLois Curfman McInnes 30239ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30339ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3048965ea79SLois Curfman McInnes 3056d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30639ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3078965ea79SLois Curfman McInnes } 3083a40ed3dSBarry Smith PetscFunctionReturn(0); 3098965ea79SLois Curfman McInnes } 3108965ea79SLois Curfman McInnes 3114a2ae208SSatish Balay #undef __FUNCT__ 3124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 313dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3148965ea79SLois Curfman McInnes { 315dfbe8321SBarry Smith PetscErrorCode ierr; 31639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3173a40ed3dSBarry Smith 3183a40ed3dSBarry Smith PetscFunctionBegin; 3193a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3203a40ed3dSBarry Smith PetscFunctionReturn(0); 3218965ea79SLois Curfman McInnes } 3228965ea79SLois Curfman McInnes 3238965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3248965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3258965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3263501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3278965ea79SLois Curfman McInnes routine. 3288965ea79SLois Curfman McInnes */ 3294a2ae208SSatish Balay #undef __FUNCT__ 3304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 331f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3328965ea79SLois Curfman McInnes { 33339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3346849ba73SBarry Smith PetscErrorCode ierr; 335*d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33613f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 33713f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3387adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33913f74950SBarry Smith PetscInt *lens,*lrows,*values; 34013f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3417adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 3428965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3438965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 34435d8aa7fSBarry Smith PetscTruth found; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 3478965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 34813f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 34913f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 35013f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3518965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3528965ea79SLois Curfman McInnes idx = rows[i]; 35335d8aa7fSBarry Smith found = PETSC_FALSE; 3548965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3558965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 356c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3578965ea79SLois Curfman McInnes } 3588965ea79SLois Curfman McInnes } 35929bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3608965ea79SLois Curfman McInnes } 361c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3628965ea79SLois Curfman McInnes 3638965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 364c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* post receives: */ 36713f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 368b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37013f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3718965ea79SLois Curfman McInnes } 3728965ea79SLois Curfman McInnes 3738965ea79SLois Curfman McInnes /* do sends: 3748965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3758965ea79SLois Curfman McInnes the ith processor 3768965ea79SLois Curfman McInnes */ 37713f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 378b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 37913f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 3808965ea79SLois Curfman McInnes starts[0] = 0; 381c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3828965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3838965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3848965ea79SLois Curfman McInnes } 3858965ea79SLois Curfman McInnes 3868965ea79SLois Curfman McInnes starts[0] = 0; 387c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3888965ea79SLois Curfman McInnes count = 0; 3898965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 390c1dc657dSBarry Smith if (nprocs[2*i+1]) { 39113f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3928965ea79SLois Curfman McInnes } 3938965ea79SLois Curfman McInnes } 394606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3958965ea79SLois Curfman McInnes 3968965ea79SLois Curfman McInnes base = owners[rank]; 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* wait on receives */ 39913f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 4008965ea79SLois Curfman McInnes source = lens + nrecvs; 4018965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4028965ea79SLois Curfman McInnes while (count) { 403ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4048965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40513f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4078965ea79SLois Curfman McInnes lens[imdex] = n; 4088965ea79SLois Curfman McInnes slen += n; 4098965ea79SLois Curfman McInnes count--; 4108965ea79SLois Curfman McInnes } 411606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes 4138965ea79SLois Curfman McInnes /* move the data into the send scatter */ 41413f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes count = 0; 4168965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4178965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4188965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4198965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4208965ea79SLois Curfman McInnes } 4218965ea79SLois Curfman McInnes } 422606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 423606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 424606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 425606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4268965ea79SLois Curfman McInnes 4278965ea79SLois Curfman McInnes /* actually zap the local rows */ 428f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 429606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes 4318965ea79SLois Curfman McInnes /* wait on sends */ 4328965ea79SLois Curfman McInnes if (nsends) { 433b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 434ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 435606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4368965ea79SLois Curfman McInnes } 437606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 438606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4398965ea79SLois Curfman McInnes 4403a40ed3dSBarry Smith PetscFunctionReturn(0); 4418965ea79SLois Curfman McInnes } 4428965ea79SLois Curfman McInnes 4434a2ae208SSatish Balay #undef __FUNCT__ 4444a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4468965ea79SLois Curfman McInnes { 44739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449c456f294SBarry Smith 4503a40ed3dSBarry Smith PetscFunctionBegin; 451ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 452ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 45344cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 4558965ea79SLois Curfman McInnes } 4568965ea79SLois Curfman McInnes 4574a2ae208SSatish Balay #undef __FUNCT__ 4584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 459dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4608965ea79SLois Curfman McInnes { 46139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 462dfbe8321SBarry Smith PetscErrorCode ierr; 463c456f294SBarry Smith 4643a40ed3dSBarry Smith PetscFunctionBegin; 465ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 466ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 46744cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4683a40ed3dSBarry Smith PetscFunctionReturn(0); 4698965ea79SLois Curfman McInnes } 4708965ea79SLois Curfman McInnes 4714a2ae208SSatish Balay #undef __FUNCT__ 4724a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 473dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 474096963f5SLois Curfman McInnes { 475096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 476dfbe8321SBarry Smith PetscErrorCode ierr; 47787828ca2SBarry Smith PetscScalar zero = 0.0; 478096963f5SLois Curfman McInnes 4793a40ed3dSBarry Smith PetscFunctionBegin; 4802dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 4817c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 482ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 483ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 485096963f5SLois Curfman McInnes } 486096963f5SLois Curfman McInnes 4874a2ae208SSatish Balay #undef __FUNCT__ 4884a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 489dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 490096963f5SLois Curfman McInnes { 491096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 492dfbe8321SBarry Smith PetscErrorCode ierr; 493096963f5SLois Curfman McInnes 4943a40ed3dSBarry Smith PetscFunctionBegin; 4953501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4967c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 497ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 498ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4993a40ed3dSBarry Smith PetscFunctionReturn(0); 500096963f5SLois Curfman McInnes } 501096963f5SLois Curfman McInnes 5024a2ae208SSatish Balay #undef __FUNCT__ 5034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5058965ea79SLois Curfman McInnes { 50639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 507096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 508dfbe8321SBarry Smith PetscErrorCode ierr; 509*d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 51087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 511ed3cc1f0SBarry Smith 5123a40ed3dSBarry Smith PetscFunctionBegin; 5132dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5141ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 515096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 516*d0f46423SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 517*d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 518*d0f46423SBarry Smith radd = A->rmap->rstart*m; 51944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 520096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 521096963f5SLois Curfman McInnes } 5221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5233a40ed3dSBarry Smith PetscFunctionReturn(0); 5248965ea79SLois Curfman McInnes } 5258965ea79SLois Curfman McInnes 5264a2ae208SSatish Balay #undef __FUNCT__ 5274a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 528dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5298965ea79SLois Curfman McInnes { 5303501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 531dfbe8321SBarry Smith PetscErrorCode ierr; 53201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 53301b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 53401b82886SBarry Smith #endif 535ed3cc1f0SBarry Smith 5363a40ed3dSBarry Smith PetscFunctionBegin; 53794d884c6SBarry Smith 538aa482453SBarry Smith #if defined(PETSC_USE_LOG) 539*d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5408965ea79SLois Curfman McInnes #endif 5418798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5423501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 54305b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 54405b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 54501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 5462fbe02b9SBarry Smith if (lu) { 54762b4c0b3SBarry Smith ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 54862b4c0b3SBarry Smith ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 54962b4c0b3SBarry Smith ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 55009d27a7eSBarry Smith 5512fbe02b9SBarry Smith if (lu->is_pla) { 55201b82886SBarry Smith ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 55301b82886SBarry Smith ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 55401b82886SBarry Smith ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 555622d7880SLois Curfman McInnes } 5562fbe02b9SBarry Smith } 55701b82886SBarry Smith #endif 55801b82886SBarry Smith 559606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 560dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 561901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 562901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5634ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5644ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5654ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5663a40ed3dSBarry Smith PetscFunctionReturn(0); 5678965ea79SLois Curfman McInnes } 56839ddd567SLois Curfman McInnes 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5728965ea79SLois Curfman McInnes { 57339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575aa05aa95SBarry Smith PetscViewerFormat format; 576aa05aa95SBarry Smith int fd; 577*d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 578aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 579578230a0SSatish Balay PetscScalar *work,*v,*vv; 580aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 581aa05aa95SBarry Smith MPI_Status status; 5827056b6fcSBarry Smith 5833a40ed3dSBarry Smith PetscFunctionBegin; 58439ddd567SLois Curfman McInnes if (mdn->size == 1) { 58539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 586aa05aa95SBarry Smith } else { 587aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 5887adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 5897adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 590aa05aa95SBarry Smith 591aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 592aa05aa95SBarry Smith if (format == PETSC_VIEWER_BINARY_NATIVE) { 593aa05aa95SBarry Smith 594aa05aa95SBarry Smith if (!rank) { 595aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 596aa05aa95SBarry Smith header[0] = MAT_FILE_COOKIE; 597*d0f46423SBarry Smith header[1] = mat->rmap->N; 598aa05aa95SBarry Smith header[2] = N; 599aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 600aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 601aa05aa95SBarry Smith 602aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 603*d0f46423SBarry Smith mmax = mat->rmap->n; 604aa05aa95SBarry Smith for (i=1; i<size; i++) { 605*d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6068965ea79SLois Curfman McInnes } 607aa05aa95SBarry Smith ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 608aa05aa95SBarry Smith 609aa05aa95SBarry Smith /* write out local array, by rows */ 610*d0f46423SBarry Smith m = mat->rmap->n; 611aa05aa95SBarry Smith v = a->v; 612aa05aa95SBarry Smith for (j=0; j<N; j++) { 613aa05aa95SBarry Smith for (i=0; i<m; i++) { 614578230a0SSatish Balay work[j + i*N] = *v++; 615aa05aa95SBarry Smith } 616aa05aa95SBarry Smith } 617aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 618aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 619aa05aa95SBarry Smith mmax = 0; 620aa05aa95SBarry Smith for (i=1; i<size; i++) { 621*d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 622aa05aa95SBarry Smith } 623578230a0SSatish Balay ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 624aa05aa95SBarry Smith for(k = 1; k < size; k++) { 625f8009846SMatthew Knepley v = vv; 626*d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 6277adad957SLisandro Dalcin ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith for(j = 0; j < N; j++) { 630aa05aa95SBarry Smith for(i = 0; i < m; i++) { 631578230a0SSatish Balay work[j + i*N] = *v++; 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith } 634aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 635aa05aa95SBarry Smith } 636aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 637578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 638aa05aa95SBarry Smith } else { 639*d0f46423SBarry Smith ierr = MPI_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 640aa05aa95SBarry Smith } 6414aa34b0aSBarry Smith } else { 642a542b6e8SBarry Smith SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE"); 643aa05aa95SBarry Smith } 644aa05aa95SBarry Smith } 6453a40ed3dSBarry Smith PetscFunctionReturn(0); 6468965ea79SLois Curfman McInnes } 6478965ea79SLois Curfman McInnes 6484a2ae208SSatish Balay #undef __FUNCT__ 6494a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6506849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6518965ea79SLois Curfman McInnes { 65239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 653dfbe8321SBarry Smith PetscErrorCode ierr; 65432dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 655a313700dSBarry Smith const PetscViewerType vtype; 65632077d6dSBarry Smith PetscTruth iascii,isdraw; 657b0a32e0cSBarry Smith PetscViewer sviewer; 658f3ef73ceSBarry Smith PetscViewerFormat format; 65901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 66001b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 66101b82886SBarry Smith #endif 6628965ea79SLois Curfman McInnes 6633a40ed3dSBarry Smith PetscFunctionBegin; 66432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 665fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 66632077d6dSBarry Smith if (iascii) { 667b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 668b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 669456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6704e220ebcSLois Curfman McInnes MatInfo info; 671888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 672*d0f46423SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n, 67377431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 674b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6753501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 67601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 67701b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 6786c995c7dSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",lu->Plapack_nprows, lu->Plapack_npcols);CHKERRQ(ierr); 67901b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 6806c995c7dSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",lu->Plapack_ierror);CHKERRQ(ierr); 6816c995c7dSHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",lu->Plapack_nb_alg);CHKERRQ(ierr); 68201b82886SBarry Smith #endif 6833a40ed3dSBarry Smith PetscFunctionReturn(0); 684fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6853a40ed3dSBarry Smith PetscFunctionReturn(0); 6868965ea79SLois Curfman McInnes } 687f1af5d2fSBarry Smith } else if (isdraw) { 688b0a32e0cSBarry Smith PetscDraw draw; 689f1af5d2fSBarry Smith PetscTruth isnull; 690f1af5d2fSBarry Smith 691b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 692b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 693f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 694f1af5d2fSBarry Smith } 69577ed5343SBarry Smith 6968965ea79SLois Curfman McInnes if (size == 1) { 69739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6983a40ed3dSBarry Smith } else { 6998965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7008965ea79SLois Curfman McInnes Mat A; 701*d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 702ba8c8a56SBarry Smith PetscInt *cols; 703ba8c8a56SBarry Smith PetscScalar *vals; 7048965ea79SLois Curfman McInnes 7057adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 7068965ea79SLois Curfman McInnes if (!rank) { 707f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7083a40ed3dSBarry Smith } else { 709f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7108965ea79SLois Curfman McInnes } 7117adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 712878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 713878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 71452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes 71639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71739ddd567SLois Curfman McInnes but it's quick for now */ 71851022da4SBarry Smith A->insertmode = INSERT_VALUES; 719*d0f46423SBarry Smith row = mat->rmap->rstart; m = mdn->A->rmap->n; 7208965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 721ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 722ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 723ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72439ddd567SLois Curfman McInnes row++; 7258965ea79SLois Curfman McInnes } 7268965ea79SLois Curfman McInnes 7276d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7286d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 730b9b97703SBarry Smith if (!rank) { 7316831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7328965ea79SLois Curfman McInnes } 733b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 7368965ea79SLois Curfman McInnes } 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 742dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7438965ea79SLois Curfman McInnes { 744dfbe8321SBarry Smith PetscErrorCode ierr; 74532077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 7468965ea79SLois Curfman McInnes 747433994e6SBarry Smith PetscFunctionBegin; 7480f5bd95cSBarry Smith 74932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 750fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 751b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 752fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 7530f5bd95cSBarry Smith 75432077d6dSBarry Smith if (iascii || issocket || isdraw) { 755f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7560f5bd95cSBarry Smith } else if (isbinary) { 7573a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 7585cd90555SBarry Smith } else { 759958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 7608965ea79SLois Curfman McInnes } 7613a40ed3dSBarry Smith PetscFunctionReturn(0); 7628965ea79SLois Curfman McInnes } 7638965ea79SLois Curfman McInnes 7644a2ae208SSatish Balay #undef __FUNCT__ 7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7678965ea79SLois Curfman McInnes { 7683501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7693501a2bdSLois Curfman McInnes Mat mdn = mat->A; 770dfbe8321SBarry Smith PetscErrorCode ierr; 771329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 774*d0f46423SBarry Smith info->rows_global = (double)A->rmap->N; 775*d0f46423SBarry Smith info->columns_global = (double)A->cmap->N; 776*d0f46423SBarry Smith info->rows_local = (double)A->rmap->n; 777*d0f46423SBarry Smith info->columns_local = (double)A->cmap->N; 7784e220ebcSLois Curfman McInnes info->block_size = 1.0; 7794e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7804e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7814e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7828965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7834e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7844e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7854e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7864e220ebcSLois Curfman McInnes info->memory = isend[3]; 7874e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7888965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7897adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 7904e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7914e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7924e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7934e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7944e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7958965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7967adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 7974e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7984e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7994e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8004e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8014e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8028965ea79SLois Curfman McInnes } 8034e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8044e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8054e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 8114e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 8128965ea79SLois Curfman McInnes { 81339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 8158965ea79SLois Curfman McInnes 8163a40ed3dSBarry Smith PetscFunctionBegin; 81712c028f9SKris Buschelman switch (op) { 818512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8214e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82212c028f9SKris Buschelman break; 82312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8244e0d8c25SBarry Smith a->roworiented = flg; 8254e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82612c028f9SKris Buschelman break; 8274e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 829290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83012c028f9SKris Buschelman break; 83112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8324e0d8c25SBarry Smith a->donotstash = flg; 83312c028f9SKris Buschelman break; 83477e54ba9SKris Buschelman case MAT_SYMMETRIC: 83577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8369a4540c5SBarry Smith case MAT_HERMITIAN: 8379a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 838600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 839290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84077e54ba9SKris Buschelman break; 84112c028f9SKris Buschelman default: 842600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8433a40ed3dSBarry Smith } 8443a40ed3dSBarry Smith PetscFunctionReturn(0); 8458965ea79SLois Curfman McInnes } 8468965ea79SLois Curfman McInnes 8478965ea79SLois Curfman McInnes 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 850dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8515b2fa520SLois Curfman McInnes { 8525b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8535b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85487828ca2SBarry Smith PetscScalar *l,*r,x,*v; 855dfbe8321SBarry Smith PetscErrorCode ierr; 856*d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8575b2fa520SLois Curfman McInnes 8585b2fa520SLois Curfman McInnes PetscFunctionBegin; 85972d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8605b2fa520SLois Curfman McInnes if (ll) { 86172d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 862175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8631ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8645b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8655b2fa520SLois Curfman McInnes x = l[i]; 8665b2fa520SLois Curfman McInnes v = mat->v + i; 8675b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8685b2fa520SLois Curfman McInnes } 8691ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 870efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8715b2fa520SLois Curfman McInnes } 8725b2fa520SLois Curfman McInnes if (rr) { 873175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 874175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 875ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 876ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8771ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8785b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8795b2fa520SLois Curfman McInnes x = r[i]; 8805b2fa520SLois Curfman McInnes v = mat->v + i*m; 8815b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8825b2fa520SLois Curfman McInnes } 8831ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 884efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8855b2fa520SLois Curfman McInnes } 8865b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8875b2fa520SLois Curfman McInnes } 8885b2fa520SLois Curfman McInnes 8894a2ae208SSatish Balay #undef __FUNCT__ 8904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 891dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 892096963f5SLois Curfman McInnes { 8933501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8943501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 895dfbe8321SBarry Smith PetscErrorCode ierr; 89613f74950SBarry Smith PetscInt i,j; 897329f5518SBarry Smith PetscReal sum = 0.0; 89887828ca2SBarry Smith PetscScalar *v = mat->v; 8993501a2bdSLois Curfman McInnes 9003a40ed3dSBarry Smith PetscFunctionBegin; 9013501a2bdSLois Curfman McInnes if (mdn->size == 1) { 902064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9033501a2bdSLois Curfman McInnes } else { 9043501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 905*d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 906aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 907329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9083501a2bdSLois Curfman McInnes #else 9093501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 9103501a2bdSLois Curfman McInnes #endif 9113501a2bdSLois Curfman McInnes } 9127adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 913064f8208SBarry Smith *nrm = sqrt(*nrm); 914*d0f46423SBarry Smith ierr = PetscLogFlops(2*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9153a40ed3dSBarry Smith } else if (type == NORM_1) { 916329f5518SBarry Smith PetscReal *tmp,*tmp2; 917*d0f46423SBarry Smith ierr = PetscMalloc(2*A->cmap->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 918*d0f46423SBarry Smith tmp2 = tmp + A->cmap->N; 919*d0f46423SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 920064f8208SBarry Smith *nrm = 0.0; 9213501a2bdSLois Curfman McInnes v = mat->v; 922*d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 923*d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9253501a2bdSLois Curfman McInnes } 9263501a2bdSLois Curfman McInnes } 927*d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 928*d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 929064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9303501a2bdSLois Curfman McInnes } 931606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 932*d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9333a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 934329f5518SBarry Smith PetscReal ntemp; 9353501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 9367adad957SLisandro Dalcin ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 9373a40ed3dSBarry Smith } else { 93829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 9393501a2bdSLois Curfman McInnes } 9403501a2bdSLois Curfman McInnes } 9413a40ed3dSBarry Smith PetscFunctionReturn(0); 9423501a2bdSLois Curfman McInnes } 9433501a2bdSLois Curfman McInnes 9444a2ae208SSatish Balay #undef __FUNCT__ 9454a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 946fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9473501a2bdSLois Curfman McInnes { 9483501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9493501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9503501a2bdSLois Curfman McInnes Mat B; 951*d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9526849ba73SBarry Smith PetscErrorCode ierr; 95313f74950SBarry Smith PetscInt j,i; 95487828ca2SBarry Smith PetscScalar *v; 9553501a2bdSLois Curfman McInnes 9563a40ed3dSBarry Smith PetscFunctionBegin; 957e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 958fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 9597adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 960*d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9617adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 962878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 963fc4dec0aSBarry Smith } else { 964fc4dec0aSBarry Smith B = *matout; 965fc4dec0aSBarry Smith } 9663501a2bdSLois Curfman McInnes 967*d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 9681acff37aSSatish Balay ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9693501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9701acff37aSSatish Balay for (j=0; j<n; j++) { 9713501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9723501a2bdSLois Curfman McInnes v += m; 9733501a2bdSLois Curfman McInnes } 974606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9756d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9766d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 977815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9783501a2bdSLois Curfman McInnes *matout = B; 9793501a2bdSLois Curfman McInnes } else { 980273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9813501a2bdSLois Curfman McInnes } 9823a40ed3dSBarry Smith PetscFunctionReturn(0); 983096963f5SLois Curfman McInnes } 984096963f5SLois Curfman McInnes 985d9eff348SSatish Balay #include "petscblaslapack.h" 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 988f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 98944cd7ae7SLois Curfman McInnes { 99044cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 99144cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 992f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 993efee365bSSatish Balay PetscErrorCode ierr; 994*d0f46423SBarry Smith PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap->n*inA->cmap->N); 99544cd7ae7SLois Curfman McInnes 9963a40ed3dSBarry Smith PetscFunctionBegin; 997f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 998efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 9993a40ed3dSBarry Smith PetscFunctionReturn(0); 100044cd7ae7SLois Curfman McInnes } 100144cd7ae7SLois Curfman McInnes 10026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 10038965ea79SLois Curfman McInnes 10044a2ae208SSatish Balay #undef __FUNCT__ 10054a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1006dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1007273d9f13SBarry Smith { 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009273d9f13SBarry Smith 1010273d9f13SBarry Smith PetscFunctionBegin; 1011273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1012273d9f13SBarry Smith PetscFunctionReturn(0); 1013273d9f13SBarry Smith } 1014273d9f13SBarry Smith 101501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1016eae6fb2eSBarry Smith 1017eae6fb2eSBarry Smith #undef __FUNCT__ 1018eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack" 1019eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F) 1020eae6fb2eSBarry Smith { 1021eae6fb2eSBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1022eae6fb2eSBarry Smith PetscErrorCode ierr; 1023*d0f46423SBarry Smith PetscInt M=A->cmap->N,m=A->rmap->n,rstart; 1024eae6fb2eSBarry Smith PetscScalar *array; 1025eae6fb2eSBarry Smith PetscReal one = 1.0; 1026eae6fb2eSBarry Smith 1027eae6fb2eSBarry Smith PetscFunctionBegin; 10282fbe02b9SBarry Smith /* Copy A into F->lu->A */ 1029eae6fb2eSBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 1030eae6fb2eSBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 1031eae6fb2eSBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 103279b0a62dSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1033eae6fb2eSBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1034eae6fb2eSBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 1035eae6fb2eSBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1036eae6fb2eSBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1037eae6fb2eSBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 1038eae6fb2eSBarry Smith lu->rstart = rstart; 1039eae6fb2eSBarry Smith PetscFunctionReturn(0); 1040eae6fb2eSBarry Smith } 1041eae6fb2eSBarry Smith 104201b82886SBarry Smith #undef __FUNCT__ 10432fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack" 10442fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A) 10452fbe02b9SBarry Smith { 10462fbe02b9SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 10472fbe02b9SBarry Smith PetscErrorCode ierr; 1048*d0f46423SBarry Smith PetscInt M=A->cmap->N,m=A->rmap->n,rstart; 10492fbe02b9SBarry Smith PetscScalar *array; 10502fbe02b9SBarry Smith PetscReal one = 1.0; 10512fbe02b9SBarry Smith 10522fbe02b9SBarry Smith PetscFunctionBegin; 10532fbe02b9SBarry Smith /* Copy F into A->lu->A */ 105479b0a62dSBarry Smith ierr = MatZeroEntries(A);CHKERRQ(ierr); 10552fbe02b9SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 10562fbe02b9SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 10572fbe02b9SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 10582fbe02b9SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 10592fbe02b9SBarry Smith ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr); 10602fbe02b9SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 10612fbe02b9SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 10622fbe02b9SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 10632fbe02b9SBarry Smith lu->rstart = rstart; 10642fbe02b9SBarry Smith PetscFunctionReturn(0); 10652fbe02b9SBarry Smith } 10662fbe02b9SBarry Smith 10672fbe02b9SBarry Smith #undef __FUNCT__ 10682fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 10692fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 10702fbe02b9SBarry Smith { 10712fbe02b9SBarry Smith PetscErrorCode ierr; 10722fbe02b9SBarry Smith Mat_Plapack *luA = (Mat_Plapack*)A->spptr; 10732fbe02b9SBarry Smith Mat_Plapack *luB = (Mat_Plapack*)B->spptr; 10742fbe02b9SBarry Smith Mat_Plapack *luC = (Mat_Plapack*)C->spptr; 10752fbe02b9SBarry Smith PLA_Obj alpha = NULL,beta = NULL; 10762fbe02b9SBarry Smith 10772fbe02b9SBarry Smith PetscFunctionBegin; 10782fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr); 10792fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr); 10802fbe02b9SBarry Smith 10816e6f9017SBarry Smith /* 1082cb2480eaSBarry Smith ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr); 1083cb2480eaSBarry Smith ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr); 10846e6f9017SBarry Smith */ 1085cb2480eaSBarry Smith 10862fbe02b9SBarry Smith /* do the multiply in PLA */ 108779b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr); 108879b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr); 108979b0a62dSBarry Smith CHKMEMQ; 10902fbe02b9SBarry Smith 1091f0e3846dSSatish Balay ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A); /* CHKERRQ(ierr); */ 109279b0a62dSBarry Smith CHKMEMQ; 10932fbe02b9SBarry Smith ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr); 10942fbe02b9SBarry Smith ierr = PLA_Obj_free(&beta);CHKERRQ(ierr); 10952fbe02b9SBarry Smith 10966e6f9017SBarry Smith /* 1097cb2480eaSBarry Smith ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr); 10986e6f9017SBarry Smith */ 10992fbe02b9SBarry Smith ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr); 11002fbe02b9SBarry Smith PetscFunctionReturn(0); 11012fbe02b9SBarry Smith } 11022fbe02b9SBarry Smith 11032fbe02b9SBarry Smith #undef __FUNCT__ 11042fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 11052fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 11062fbe02b9SBarry Smith { 11072fbe02b9SBarry Smith PetscErrorCode ierr; 1108*d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 11092fbe02b9SBarry Smith Mat Cmat; 11102fbe02b9SBarry Smith 11112fbe02b9SBarry Smith PetscFunctionBegin; 1112*d0f46423SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 11136e6f9017SBarry Smith SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported"); 11142fbe02b9SBarry Smith ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 1115*d0f46423SBarry Smith ierr = MatSetSizes(Cmat,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr); 11162fbe02b9SBarry Smith ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 11172fbe02b9SBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11182fbe02b9SBarry Smith ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1119ab235cb6SHong Zhang //ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr); 1120ab235cb6SHong Zhang //ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr); 1121ab235cb6SHong Zhang //ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr); 11222fbe02b9SBarry Smith *C = Cmat; 11232fbe02b9SBarry Smith PetscFunctionReturn(0); 11242fbe02b9SBarry Smith } 11252fbe02b9SBarry Smith 11262fbe02b9SBarry Smith #undef __FUNCT__ 11272fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 11282fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 11292fbe02b9SBarry Smith { 11302fbe02b9SBarry Smith PetscErrorCode ierr; 11312fbe02b9SBarry Smith 11322fbe02b9SBarry Smith PetscFunctionBegin; 11332fbe02b9SBarry Smith if (scall == MAT_INITIAL_MATRIX){ 11342fbe02b9SBarry Smith ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 11352fbe02b9SBarry Smith } 11362fbe02b9SBarry Smith ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 11372fbe02b9SBarry Smith PetscFunctionReturn(0); 11382fbe02b9SBarry Smith } 11392fbe02b9SBarry Smith 1140ab235cb6SHong Zhang #undef __FUNCT__ 11416c995c7dSHong Zhang #define __FUNCT__ "MatSolve_MPIDense" 11426c995c7dSHong Zhang PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x) 11436c995c7dSHong Zhang { 11446c995c7dSHong Zhang MPI_Comm comm = ((PetscObject)A)->comm; 11456c995c7dSHong Zhang Mat_Plapack *lu = (Mat_Plapack*)A->spptr; 11466c995c7dSHong Zhang PetscErrorCode ierr; 1147*d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride; 11486c995c7dSHong Zhang PetscScalar *array; 11496c995c7dSHong Zhang PetscReal one = 1.0; 11506c995c7dSHong Zhang PetscMPIInt size,rank,r_rank,r_nproc,c_rank,c_nproc;; 11516c995c7dSHong Zhang PLA_Obj v_pla = NULL; 11526c995c7dSHong Zhang PetscScalar *loc_buf; 11536c995c7dSHong Zhang Vec loc_x; 11546c995c7dSHong Zhang 11556c995c7dSHong Zhang PetscFunctionBegin; 11566c995c7dSHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 11576c995c7dSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 11586c995c7dSHong Zhang 11596c995c7dSHong Zhang /* Create PLAPACK vector objects, then copy b into PLAPACK b */ 11606c995c7dSHong Zhang PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla); 11616c995c7dSHong Zhang PLA_Obj_set_to_zero(v_pla); 11626c995c7dSHong Zhang 11636c995c7dSHong Zhang /* Copy b into rhs_pla */ 11646c995c7dSHong Zhang PLA_API_begin(); 11656c995c7dSHong Zhang PLA_Obj_API_open(v_pla); 11666c995c7dSHong Zhang ierr = VecGetArray(b,&array);CHKERRQ(ierr); 11676c995c7dSHong Zhang PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart); 11686c995c7dSHong Zhang ierr = VecRestoreArray(b,&array);CHKERRQ(ierr); 11696c995c7dSHong Zhang PLA_Obj_API_close(v_pla); 11706c995c7dSHong Zhang PLA_API_end(); 11716c995c7dSHong Zhang 11726c995c7dSHong Zhang if (A->factor == MAT_FACTOR_LU){ 11736c995c7dSHong Zhang /* Apply the permutations to the right hand sides */ 11746c995c7dSHong Zhang PLA_Apply_pivots_to_rows (v_pla,lu->pivots); 11756c995c7dSHong Zhang 11766c995c7dSHong Zhang /* Solve L y = b, overwriting b with y */ 11776c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla ); 11786c995c7dSHong Zhang 11796c995c7dSHong Zhang /* Solve U x = y (=b), overwriting b with x */ 11806c995c7dSHong Zhang PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla ); 11816c995c7dSHong Zhang } else { /*MAT_FACTOR_CHOLESKY */ 11826c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla); 11836c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE), 11846c995c7dSHong Zhang PLA_NONUNIT_DIAG,lu->A,v_pla); 11856c995c7dSHong Zhang } 11866c995c7dSHong Zhang 11876c995c7dSHong Zhang /* Copy PLAPACK x into Petsc vector x */ 11886c995c7dSHong Zhang PLA_Obj_local_length(v_pla, &loc_m); 11896c995c7dSHong Zhang PLA_Obj_local_buffer(v_pla, (void**)&loc_buf); 11906c995c7dSHong Zhang PLA_Obj_local_stride(v_pla, &loc_stride); 11916c995c7dSHong Zhang /* 11926c995c7dSHong Zhang PetscPrintf(PETSC_COMM_SELF," [%d] b - local_m %d local_stride %d, loc_buf: %g %g, nb: %d\n",rank,loc_m,loc_stride,loc_buf[0],loc_buf[(loc_m-1)*loc_stride],lu->nb); 11936c995c7dSHong Zhang */ 11946c995c7dSHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr); 11956c995c7dSHong Zhang if (!lu->pla_solved){ 11966c995c7dSHong Zhang 11976c995c7dSHong Zhang PLA_Temp_comm_row_info(lu->templ,&lu->comm_2d,&r_rank,&r_nproc); 11986c995c7dSHong Zhang PLA_Temp_comm_col_info(lu->templ,&lu->comm_2d,&c_rank,&c_nproc); 11996c995c7dSHong Zhang /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */ 12006c995c7dSHong Zhang 12016c995c7dSHong Zhang /* Create IS and cts for VecScatterring */ 12026c995c7dSHong Zhang PLA_Obj_local_length(v_pla, &loc_m); 12036c995c7dSHong Zhang PLA_Obj_local_stride(v_pla, &loc_stride); 12046c995c7dSHong Zhang ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr); 12056c995c7dSHong Zhang idx_petsc = idx_pla + loc_m; 12066c995c7dSHong Zhang 12076c995c7dSHong Zhang rstart = (r_rank*c_nproc+c_rank)*lu->nb; 12086c995c7dSHong Zhang for (i=0; i<loc_m; i+=lu->nb){ 12096c995c7dSHong Zhang j = 0; 12106c995c7dSHong Zhang while (j < lu->nb && i+j < loc_m){ 12116c995c7dSHong Zhang idx_petsc[i+j] = rstart + j; j++; 12126c995c7dSHong Zhang } 12136c995c7dSHong Zhang rstart += size*lu->nb; 12146c995c7dSHong Zhang } 12156c995c7dSHong Zhang 12166c995c7dSHong Zhang for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride; 12176c995c7dSHong Zhang 12186c995c7dSHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr); 12196c995c7dSHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr); 12206c995c7dSHong Zhang ierr = PetscFree(idx_pla);CHKERRQ(ierr); 12216c995c7dSHong Zhang ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr); 12226c995c7dSHong Zhang } 12236c995c7dSHong Zhang ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12246c995c7dSHong Zhang ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12256c995c7dSHong Zhang 12266c995c7dSHong Zhang /* Free data */ 12276c995c7dSHong Zhang ierr = VecDestroy(loc_x);CHKERRQ(ierr); 12286c995c7dSHong Zhang PLA_Obj_free(&v_pla); 12296c995c7dSHong Zhang 12306c995c7dSHong Zhang lu->pla_solved = PETSC_TRUE; 12316c995c7dSHong Zhang PetscFunctionReturn(0); 12326c995c7dSHong Zhang } 12336c995c7dSHong Zhang 12346c995c7dSHong Zhang #undef __FUNCT__ 12356c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorNumeric_MPIDense" 12366c995c7dSHong Zhang PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 12376c995c7dSHong Zhang { 12386c995c7dSHong Zhang Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 12396c995c7dSHong Zhang PetscErrorCode ierr; 1240*d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,rend; 12416c995c7dSHong Zhang PetscInt info_pla=0; 12426c995c7dSHong Zhang PetscScalar *array,one = 1.0; 12436c995c7dSHong Zhang 12446c995c7dSHong Zhang PetscFunctionBegin; 12456c995c7dSHong Zhang if (lu->mstruct == SAME_NONZERO_PATTERN){ 12466c995c7dSHong Zhang PLA_Obj_free(&lu->A); 12476c995c7dSHong Zhang PLA_Obj_free (&lu->pivots); 12486c995c7dSHong Zhang } 12496c995c7dSHong Zhang /* Create PLAPACK matrix object */ 12506c995c7dSHong Zhang lu->A = NULL; lu->pivots = NULL; 12516c995c7dSHong Zhang PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A); 12526c995c7dSHong Zhang PLA_Obj_set_to_zero(lu->A); 12536c995c7dSHong Zhang PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots); 12546c995c7dSHong Zhang 12556c995c7dSHong Zhang /* Copy A into lu->A */ 12566c995c7dSHong Zhang PLA_API_begin(); 12576c995c7dSHong Zhang PLA_Obj_API_open(lu->A); 12586c995c7dSHong Zhang ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 12596c995c7dSHong Zhang ierr = MatGetArray(A,&array);CHKERRQ(ierr); 12606c995c7dSHong Zhang PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0); 12616c995c7dSHong Zhang ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 12626c995c7dSHong Zhang PLA_Obj_API_close(lu->A); 12636c995c7dSHong Zhang PLA_API_end(); 12646c995c7dSHong Zhang 12656c995c7dSHong Zhang /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */ 12666c995c7dSHong Zhang info_pla = PLA_LU(lu->A,lu->pivots); 12676c995c7dSHong Zhang if (info_pla != 0) 12686c995c7dSHong Zhang SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla); 12696c995c7dSHong Zhang 12706c995c7dSHong Zhang lu->CleanUpPlapack = PETSC_TRUE; 12716c995c7dSHong Zhang lu->rstart = rstart; 12726c995c7dSHong Zhang lu->mstruct = SAME_NONZERO_PATTERN; 12736c995c7dSHong Zhang 12746c995c7dSHong Zhang (*F)->assembled = PETSC_TRUE; /* required by -ksp_view */ 12756c995c7dSHong Zhang PetscFunctionReturn(0); 12766c995c7dSHong Zhang } 12776c995c7dSHong Zhang 12786c995c7dSHong Zhang #undef __FUNCT__ 12796c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense" 12806c995c7dSHong Zhang PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 12816c995c7dSHong Zhang { 12826c995c7dSHong Zhang Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 12836c995c7dSHong Zhang PetscErrorCode ierr; 1284*d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,rend; 12856c995c7dSHong Zhang PetscInt info_pla=0; 12866c995c7dSHong Zhang PetscScalar *array,one = 1.0; 12876c995c7dSHong Zhang 12886c995c7dSHong Zhang PetscFunctionBegin; 12896c995c7dSHong Zhang if (lu->mstruct == SAME_NONZERO_PATTERN){ 12906c995c7dSHong Zhang PLA_Obj_free(&lu->A); 12916c995c7dSHong Zhang } 12926c995c7dSHong Zhang /* Create PLAPACK matrix object */ 12936c995c7dSHong Zhang lu->A = NULL; 12946c995c7dSHong Zhang lu->pivots = NULL; 12956c995c7dSHong Zhang PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A); 12966c995c7dSHong Zhang 12976c995c7dSHong Zhang /* Copy A into lu->A */ 12986c995c7dSHong Zhang PLA_API_begin(); 12996c995c7dSHong Zhang PLA_Obj_API_open(lu->A); 13006c995c7dSHong Zhang ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 13016c995c7dSHong Zhang ierr = MatGetArray(A,&array);CHKERRQ(ierr); 13026c995c7dSHong Zhang PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0); 13036c995c7dSHong Zhang ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 13046c995c7dSHong Zhang PLA_Obj_API_close(lu->A); 13056c995c7dSHong Zhang PLA_API_end(); 13066c995c7dSHong Zhang 13076c995c7dSHong Zhang /* Factor P A -> Chol */ 13086c995c7dSHong Zhang info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A); 13096c995c7dSHong Zhang if (info_pla != 0) 13106c995c7dSHong Zhang SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla); 13116c995c7dSHong Zhang 13126c995c7dSHong Zhang lu->CleanUpPlapack = PETSC_TRUE; 13136c995c7dSHong Zhang lu->rstart = rstart; 13146c995c7dSHong Zhang lu->mstruct = SAME_NONZERO_PATTERN; 13156c995c7dSHong Zhang 13166c995c7dSHong Zhang (*F)->assembled = PETSC_TRUE; /* required by -ksp_view */ 13176c995c7dSHong Zhang PetscFunctionReturn(0); 13186c995c7dSHong Zhang } 13196c995c7dSHong Zhang 13206c995c7dSHong Zhang #undef __FUNCT__ 1321ab235cb6SHong Zhang #define __FUNCT__ "MatFactorSymbolic_Plapack_Private" 1322ab235cb6SHong Zhang PetscErrorCode MatFactorSymbolic_Plapack_Private(Mat A,MatFactorInfo *info,Mat *F) 1323ab235cb6SHong Zhang { 1324ab235cb6SHong Zhang Mat B = *F; 1325ab235cb6SHong Zhang Mat_Plapack *lu; 1326ab235cb6SHong Zhang PetscErrorCode ierr; 1327*d0f46423SBarry Smith PetscInt M=A->rmap->N; 1328ab235cb6SHong Zhang MPI_Comm comm=((PetscObject)A)->comm,comm_2d; 1329ab235cb6SHong Zhang PetscMPIInt size; 1330ab235cb6SHong Zhang PetscInt ierror; 1331ab235cb6SHong Zhang 1332ab235cb6SHong Zhang PetscFunctionBegin; 1333ab235cb6SHong Zhang lu = (Mat_Plapack*)(B->spptr); 1334ab235cb6SHong Zhang 1335ab235cb6SHong Zhang /* Set default Plapack parameters */ 1336ab235cb6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1337ab235cb6SHong Zhang lu->nprows = 1; lu->npcols = size; 1338ab235cb6SHong Zhang ierror = 0; 1339ab235cb6SHong Zhang lu->nb = M/size; 1340ab235cb6SHong Zhang if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 1341ab235cb6SHong Zhang 1342ab235cb6SHong Zhang /* Set runtime options */ 1343ab235cb6SHong Zhang ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1344ab235cb6SHong Zhang ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",lu->nprows,&lu->nprows,PETSC_NULL);CHKERRQ(ierr); 1345ab235cb6SHong Zhang ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",lu->npcols,&lu->npcols,PETSC_NULL);CHKERRQ(ierr); 1346ab235cb6SHong Zhang 1347ab235cb6SHong Zhang ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1348ab235cb6SHong Zhang ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",ierror,&ierror,PETSC_NULL);CHKERRQ(ierr); 1349ab235cb6SHong Zhang if (ierror){ 1350ab235cb6SHong Zhang PLA_Set_error_checking(ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE ); 1351ab235cb6SHong Zhang } else { 1352ab235cb6SHong Zhang PLA_Set_error_checking(ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE ); 1353ab235cb6SHong Zhang } 1354ab235cb6SHong Zhang lu->ierror = ierror; 1355ab235cb6SHong Zhang 1356ab235cb6SHong Zhang lu->nb_alg = 0; 1357ab235cb6SHong Zhang ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",lu->nb_alg,&lu->nb_alg,PETSC_NULL);CHKERRQ(ierr); 1358ab235cb6SHong Zhang if (lu->nb_alg){ 1359ab235cb6SHong Zhang pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,lu->nb_alg); 1360ab235cb6SHong Zhang } 1361ab235cb6SHong Zhang PetscOptionsEnd(); 1362ab235cb6SHong Zhang 1363ab235cb6SHong Zhang 1364ab235cb6SHong Zhang /* Create a 2D communicator */ 1365ab235cb6SHong Zhang PLA_Comm_1D_to_2D(comm,lu->nprows,lu->npcols,&comm_2d); 1366ab235cb6SHong Zhang lu->comm_2d = comm_2d; 1367ab235cb6SHong Zhang 1368ab235cb6SHong Zhang /* Initialize PLAPACK */ 1369ab235cb6SHong Zhang PLA_Init(comm_2d); 1370ab235cb6SHong Zhang 1371ab235cb6SHong Zhang /* Create object distribution template */ 1372ab235cb6SHong Zhang lu->templ = NULL; 1373ab235cb6SHong Zhang PLA_Temp_create(lu->nb, 0, &lu->templ); 1374ab235cb6SHong Zhang 1375ab235cb6SHong Zhang /* Use suggested nb_alg if it is not provided by user */ 1376ab235cb6SHong Zhang if (lu->nb_alg == 0){ 1377ab235cb6SHong Zhang PLA_Environ_nb_alg(PLA_OP_PAN_PAN,lu->templ,&lu->nb_alg); 1378ab235cb6SHong Zhang pla_Environ_set_nb_alg(PLA_OP_ALL_ALG,lu->nb_alg); 1379ab235cb6SHong Zhang } 1380ab235cb6SHong Zhang 1381ab235cb6SHong Zhang /* Set the datatype */ 1382ab235cb6SHong Zhang #if defined(PETSC_USE_COMPLEX) 1383ab235cb6SHong Zhang lu->datatype = MPI_DOUBLE_COMPLEX; 1384ab235cb6SHong Zhang #else 1385ab235cb6SHong Zhang lu->datatype = MPI_DOUBLE; 1386ab235cb6SHong Zhang #endif 1387ab235cb6SHong Zhang 1388ab235cb6SHong Zhang lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1389ab235cb6SHong Zhang lu->mstruct = DIFFERENT_NONZERO_PATTERN; 1390ab235cb6SHong Zhang lu->CleanUpPlapack = PETSC_TRUE; 1391ab235cb6SHong Zhang *F = B; 1392ab235cb6SHong Zhang PetscFunctionReturn(0); 1393ab235cb6SHong Zhang } 1394ab235cb6SHong Zhang 1395b24902e0SBarry Smith /* Note the Petsc perm permutation is ignored */ 13962fbe02b9SBarry Smith #undef __FUNCT__ 13976c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 13986c995c7dSHong Zhang PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F) 139901b82886SBarry Smith { 140001b82886SBarry Smith PetscErrorCode ierr; 1401b24902e0SBarry Smith PetscTruth issymmetric,set; 140201b82886SBarry Smith 140301b82886SBarry Smith PetscFunctionBegin; 1404b24902e0SBarry Smith ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr); 1405b24902e0SBarry Smith if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 1406b24902e0SBarry Smith ierr = MatFactorSymbolic_Plapack_Private(A,info,F);CHKERRQ(ierr); 14075c9eb25fSBarry Smith (*F)->factor = MAT_FACTOR_CHOLESKY; 1408b24902e0SBarry Smith PetscFunctionReturn(0); 140901b82886SBarry Smith } 141001b82886SBarry Smith 1411b24902e0SBarry Smith /* Note the Petsc r and c permutations are ignored */ 1412b24902e0SBarry Smith #undef __FUNCT__ 14136c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 14146c995c7dSHong Zhang PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) 1415b24902e0SBarry Smith { 1416b24902e0SBarry Smith PetscErrorCode ierr; 1417*d0f46423SBarry Smith PetscInt M = A->rmap->N; 1418b24902e0SBarry Smith Mat_Plapack *lu; 141901b82886SBarry Smith 1420b24902e0SBarry Smith PetscFunctionBegin; 1421b24902e0SBarry Smith ierr = MatFactorSymbolic_Plapack_Private(A,info,F);CHKERRQ(ierr); 1422b24902e0SBarry Smith lu = (Mat_Plapack*)(*F)->spptr; 1423b24902e0SBarry Smith ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 14245c9eb25fSBarry Smith (*F)->factor = MAT_FACTOR_LU; 142501b82886SBarry Smith PetscFunctionReturn(0); 142601b82886SBarry Smith } 142701b82886SBarry Smith 142801b82886SBarry Smith #undef __FUNCT__ 1429b24902e0SBarry Smith #define __FUNCT__ "MatGetFactor_mpidense_plapack" 1430b24902e0SBarry Smith PetscErrorCode MatGetFactor_mpidense_plapack(Mat A,MatFactorType ftype,Mat *F) 143101b82886SBarry Smith { 143201b82886SBarry Smith PetscErrorCode ierr; 14336c995c7dSHong Zhang Mat_Plapack *lu; 14346c995c7dSHong Zhang PetscMPIInt size; 14356c995c7dSHong Zhang PetscInt M; 143601b82886SBarry Smith 143701b82886SBarry Smith PetscFunctionBegin; 143801b82886SBarry Smith /* Create the factorization matrix */ 1439eae6fb2eSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr); 1440*d0f46423SBarry Smith ierr = MatSetSizes(*F,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1441eae6fb2eSBarry Smith ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr); 1442b24902e0SBarry Smith ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr); 1443b24902e0SBarry Smith A->spptr = (void*)lu; 144401b82886SBarry Smith 1445b24902e0SBarry Smith lu = (Mat_Plapack*)(A->spptr); 144601b82886SBarry Smith 1447b24902e0SBarry Smith /* Set default Plapack parameters */ 14486c995c7dSHong Zhang ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1449b24902e0SBarry Smith lu->nb = M/size; 1450b24902e0SBarry Smith if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 145101b82886SBarry Smith 1452b24902e0SBarry Smith /* Set runtime options */ 1453b24902e0SBarry Smith ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1454b24902e0SBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1455b24902e0SBarry Smith PetscOptionsEnd(); 145601b82886SBarry Smith 1457b24902e0SBarry Smith /* Create object distribution template */ 1458b24902e0SBarry Smith lu->templ = NULL; 1459b24902e0SBarry Smith ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 1460b24902e0SBarry Smith 1461b24902e0SBarry Smith /* Set the datatype */ 1462b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX) 1463b24902e0SBarry Smith lu->datatype = MPI_DOUBLE_COMPLEX; 1464b24902e0SBarry Smith #else 1465b24902e0SBarry Smith lu->datatype = MPI_DOUBLE; 1466b24902e0SBarry Smith #endif 1467b24902e0SBarry Smith 1468*d0f46423SBarry Smith ierr = PLA_Matrix_create(lu->datatype,M,A->cmap->N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 1469b24902e0SBarry Smith 1470b24902e0SBarry Smith 1471b24902e0SBarry Smith lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1472b24902e0SBarry Smith 1473b24902e0SBarry Smith if (ftype == MAT_FACTOR_LU) { 1474b24902e0SBarry Smith (*F)->ops->lufactorsymbolic = MatLUFactorSymbolic_MPIDense; 1475b24902e0SBarry Smith (*F)->ops->lufactornumeric = MatLUFactorNumeric_MPIDense; 1476b24902e0SBarry Smith (*F)->ops->solve = MatSolve_MPIDense; 1477b24902e0SBarry Smith } else if (ftype == MAT_FACTOR_CHOLESKY) { 14786c995c7dSHong Zhang (*F)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_MPIDense; 14796c995c7dSHong Zhang (*F)->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_MPIDense; 1480b24902e0SBarry Smith (*F)->ops->solve = MatSolve_MPIDense; 1481b24902e0SBarry Smith } else SETERRQ(PETSC_ERR_SUP,"No incomplete factorizations for dense matrices"); 1482b24902e0SBarry Smith 148301b82886SBarry Smith PetscFunctionReturn(0); 148401b82886SBarry Smith } 148501b82886SBarry Smith #endif 148601b82886SBarry Smith 14878965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 148809dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 148909dc0095SBarry Smith MatGetRow_MPIDense, 149009dc0095SBarry Smith MatRestoreRow_MPIDense, 149109dc0095SBarry Smith MatMult_MPIDense, 149297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 14937c922b88SBarry Smith MatMultTranspose_MPIDense, 14947c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 149501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 149601b82886SBarry Smith MatSolve_MPIDense, 149701b82886SBarry Smith #else 14988965ea79SLois Curfman McInnes 0, 149901b82886SBarry Smith #endif 150009dc0095SBarry Smith 0, 150109dc0095SBarry Smith 0, 150297304618SKris Buschelman /*10*/ 0, 150309dc0095SBarry Smith 0, 150409dc0095SBarry Smith 0, 150509dc0095SBarry Smith 0, 150609dc0095SBarry Smith MatTranspose_MPIDense, 150797304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 15086e4ee0c6SHong Zhang MatEqual_MPIDense, 150909dc0095SBarry Smith MatGetDiagonal_MPIDense, 15105b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 151109dc0095SBarry Smith MatNorm_MPIDense, 151297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 151309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 151409dc0095SBarry Smith 0, 151509dc0095SBarry Smith MatSetOption_MPIDense, 151609dc0095SBarry Smith MatZeroEntries_MPIDense, 151797304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 151801b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15190ad19415SHong Zhang MatLUFactorSymbolic_MPIDense, 152001b82886SBarry Smith MatLUFactorNumeric_MPIDense, 15210ad19415SHong Zhang MatCholeskyFactorSymbolic_MPIDense, 152201b82886SBarry Smith MatCholeskyFactorNumeric_MPIDense, 152301b82886SBarry Smith #else 1524919b68f7SBarry Smith 0, 152501b82886SBarry Smith 0, 152601b82886SBarry Smith 0, 152701b82886SBarry Smith 0, 152801b82886SBarry Smith #endif 152997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1530273d9f13SBarry Smith 0, 153109dc0095SBarry Smith 0, 153209dc0095SBarry Smith MatGetArray_MPIDense, 153309dc0095SBarry Smith MatRestoreArray_MPIDense, 153497304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 153509dc0095SBarry Smith 0, 153609dc0095SBarry Smith 0, 153709dc0095SBarry Smith 0, 153809dc0095SBarry Smith 0, 153997304618SKris Buschelman /*40*/ 0, 15402ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 154109dc0095SBarry Smith 0, 154209dc0095SBarry Smith MatGetValues_MPIDense, 154309dc0095SBarry Smith 0, 154497304618SKris Buschelman /*45*/ 0, 154509dc0095SBarry Smith MatScale_MPIDense, 154609dc0095SBarry Smith 0, 154709dc0095SBarry Smith 0, 154809dc0095SBarry Smith 0, 1549521d7252SBarry Smith /*50*/ 0, 155009dc0095SBarry Smith 0, 155109dc0095SBarry Smith 0, 155209dc0095SBarry Smith 0, 155309dc0095SBarry Smith 0, 155497304618SKris Buschelman /*55*/ 0, 155509dc0095SBarry Smith 0, 155609dc0095SBarry Smith 0, 155709dc0095SBarry Smith 0, 155809dc0095SBarry Smith 0, 155997304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1560b9b97703SBarry Smith MatDestroy_MPIDense, 1561b9b97703SBarry Smith MatView_MPIDense, 1562357abbc8SBarry Smith 0, 156397304618SKris Buschelman 0, 156497304618SKris Buschelman /*65*/ 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 156797304618SKris Buschelman 0, 156897304618SKris Buschelman 0, 156997304618SKris Buschelman /*70*/ 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman 0, 157497304618SKris Buschelman /*75*/ 0, 157597304618SKris Buschelman 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman 0, 157997304618SKris Buschelman /*80*/ 0, 158097304618SKris Buschelman 0, 158197304618SKris Buschelman 0, 158297304618SKris Buschelman 0, 1583865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1584865e5f61SKris Buschelman 0, 1585865e5f61SKris Buschelman 0, 1586865e5f61SKris Buschelman 0, 1587865e5f61SKris Buschelman 0, 1588865e5f61SKris Buschelman 0, 15892fbe02b9SBarry Smith /*90*/ 15902fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15912fbe02b9SBarry Smith MatMatMult_MPIDense_MPIDense, 15924ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 15932fbe02b9SBarry Smith MatMatMultNumeric_MPIDense_MPIDense, 15942fbe02b9SBarry Smith #else 1595865e5f61SKris Buschelman 0, 1596865e5f61SKris Buschelman 0, 1597865e5f61SKris Buschelman 0, 15982fbe02b9SBarry Smith #endif 15992fbe02b9SBarry Smith 0, 1600865e5f61SKris Buschelman /*95*/ 0, 1601865e5f61SKris Buschelman 0, 1602865e5f61SKris Buschelman 0, 1603865e5f61SKris Buschelman 0}; 16048965ea79SLois Curfman McInnes 1605273d9f13SBarry Smith EXTERN_C_BEGIN 16064a2ae208SSatish Balay #undef __FUNCT__ 1607a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1608be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1609a23d5eceSKris Buschelman { 1610a23d5eceSKris Buschelman Mat_MPIDense *a; 1611dfbe8321SBarry Smith PetscErrorCode ierr; 1612a23d5eceSKris Buschelman 1613a23d5eceSKris Buschelman PetscFunctionBegin; 1614a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1615a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1616a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1619f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1620*d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 16215c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 16225c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 162352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1624a23d5eceSKris Buschelman PetscFunctionReturn(0); 1625a23d5eceSKris Buschelman } 1626a23d5eceSKris Buschelman EXTERN_C_END 1627a23d5eceSKris Buschelman 16280bad9183SKris Buschelman /*MC 1629fafad747SKris Buschelman MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 16300bad9183SKris Buschelman 16310bad9183SKris Buschelman Options Database Keys: 16320bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 16330bad9183SKris Buschelman 16340bad9183SKris Buschelman Level: beginner 16350bad9183SKris Buschelman 16367878bbefSBarry Smith MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR) 16377878bbefSBarry Smith for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed 16387878bbefSBarry Smith (run config/configure.py with the option --download-plapack) 16397878bbefSBarry Smith 16407878bbefSBarry Smith 16417878bbefSBarry Smith Options Database Keys: 16427878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition 16437878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition 16447878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector 16457878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size 16467878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag 16477878bbefSBarry Smith 16487878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE 16490bad9183SKris Buschelman M*/ 16500bad9183SKris Buschelman 1651a23d5eceSKris Buschelman EXTERN_C_BEGIN 1652a23d5eceSKris Buschelman #undef __FUNCT__ 16534a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1654be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1655273d9f13SBarry Smith { 1656273d9f13SBarry Smith Mat_MPIDense *a; 1657dfbe8321SBarry Smith PetscErrorCode ierr; 1658273d9f13SBarry Smith 1659273d9f13SBarry Smith PetscFunctionBegin; 166038f2d2fdSLisandro Dalcin ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1661b0a32e0cSBarry Smith mat->data = (void*)a; 1662273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1663273d9f13SBarry Smith mat->mapping = 0; 1664273d9f13SBarry Smith 1665273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 16667adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 16677adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1668273d9f13SBarry Smith 1669*d0f46423SBarry Smith mat->rmap->bs = mat->cmap->bs = 1; 1670*d0f46423SBarry Smith ierr = PetscMapSetUp(mat->rmap);CHKERRQ(ierr); 1671*d0f46423SBarry Smith ierr = PetscMapSetUp(mat->cmap);CHKERRQ(ierr); 1672*d0f46423SBarry Smith a->nvec = mat->cmap->n; 1673273d9f13SBarry Smith 1674273d9f13SBarry Smith /* build cache for off array entries formed */ 1675273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16767adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1677273d9f13SBarry Smith 1678273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1679273d9f13SBarry Smith a->lvec = 0; 1680273d9f13SBarry Smith a->Mvctx = 0; 1681273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1682273d9f13SBarry Smith 1683273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1684273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1685273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1686a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1687a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1688a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 16894ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 16904ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 16914ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 16924ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 16934ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 16944ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 16954ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 16964ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 16974ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 16987878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1699b24902e0SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetFactor_mpidense_plapack_C", 1700b24902e0SBarry Smith "MatGetFactor_mpidense_plapack", 1701b24902e0SBarry Smith MatGetFactor_mpidense_plapack);CHKERRQ(ierr); 17027878bbefSBarry Smith #endif 170338aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 170401b82886SBarry Smith 1705273d9f13SBarry Smith PetscFunctionReturn(0); 1706273d9f13SBarry Smith } 1707273d9f13SBarry Smith EXTERN_C_END 1708273d9f13SBarry Smith 1709209238afSKris Buschelman /*MC 1710002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1711209238afSKris Buschelman 1712209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1713209238afSKris Buschelman and MATMPIDENSE otherwise. 1714209238afSKris Buschelman 1715209238afSKris Buschelman Options Database Keys: 1716209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1717209238afSKris Buschelman 1718209238afSKris Buschelman Level: beginner 1719209238afSKris Buschelman 172001b82886SBarry Smith 1721209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1722209238afSKris Buschelman M*/ 1723209238afSKris Buschelman 1724209238afSKris Buschelman EXTERN_C_BEGIN 1725209238afSKris Buschelman #undef __FUNCT__ 1726209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1727be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1728dfbe8321SBarry Smith { 17296849ba73SBarry Smith PetscErrorCode ierr; 173013f74950SBarry Smith PetscMPIInt size; 1731209238afSKris Buschelman 1732209238afSKris Buschelman PetscFunctionBegin; 17337adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1734209238afSKris Buschelman if (size == 1) { 1735209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1736209238afSKris Buschelman } else { 1737209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1738209238afSKris Buschelman } 1739209238afSKris Buschelman PetscFunctionReturn(0); 1740209238afSKris Buschelman } 1741209238afSKris Buschelman EXTERN_C_END 1742209238afSKris Buschelman 17434a2ae208SSatish Balay #undef __FUNCT__ 17444a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1745273d9f13SBarry Smith /*@C 1746273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1747273d9f13SBarry Smith 1748273d9f13SBarry Smith Not collective 1749273d9f13SBarry Smith 1750273d9f13SBarry Smith Input Parameters: 1751273d9f13SBarry Smith . A - the matrix 1752273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1753273d9f13SBarry Smith to control all matrix memory allocation. 1754273d9f13SBarry Smith 1755273d9f13SBarry Smith Notes: 1756273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1757273d9f13SBarry Smith storage by columns. 1758273d9f13SBarry Smith 1759273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1760273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1761273d9f13SBarry Smith set data=PETSC_NULL. 1762273d9f13SBarry Smith 1763273d9f13SBarry Smith Level: intermediate 1764273d9f13SBarry Smith 1765273d9f13SBarry Smith .keywords: matrix,dense, parallel 1766273d9f13SBarry Smith 1767273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1768273d9f13SBarry Smith @*/ 1769be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1770273d9f13SBarry Smith { 1771dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1772273d9f13SBarry Smith 1773273d9f13SBarry Smith PetscFunctionBegin; 1774565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1775a23d5eceSKris Buschelman if (f) { 1776a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1777a23d5eceSKris Buschelman } 1778273d9f13SBarry Smith PetscFunctionReturn(0); 1779273d9f13SBarry Smith } 1780273d9f13SBarry Smith 17814a2ae208SSatish Balay #undef __FUNCT__ 17824a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 17838965ea79SLois Curfman McInnes /*@C 178439ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 17858965ea79SLois Curfman McInnes 1786db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1787db81eaa0SLois Curfman McInnes 17888965ea79SLois Curfman McInnes Input Parameters: 1789db81eaa0SLois Curfman McInnes + comm - MPI communicator 17908965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1791db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 17928965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1793db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 17947f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1795dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 17968965ea79SLois Curfman McInnes 17978965ea79SLois Curfman McInnes Output Parameter: 1798477f1c0bSLois Curfman McInnes . A - the matrix 17998965ea79SLois Curfman McInnes 1800b259b22eSLois Curfman McInnes Notes: 180139ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 180239ddd567SLois Curfman McInnes storage by columns. 18038965ea79SLois Curfman McInnes 180418f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 180518f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18067f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 180718f449edSLois Curfman McInnes 18088965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18098965ea79SLois Curfman McInnes (possibly both). 18108965ea79SLois Curfman McInnes 1811027ccd11SLois Curfman McInnes Level: intermediate 1812027ccd11SLois Curfman McInnes 181339ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 18148965ea79SLois Curfman McInnes 181539ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 18168965ea79SLois Curfman McInnes @*/ 1817be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 18188965ea79SLois Curfman McInnes { 18196849ba73SBarry Smith PetscErrorCode ierr; 182013f74950SBarry Smith PetscMPIInt size; 18218965ea79SLois Curfman McInnes 18223a40ed3dSBarry Smith PetscFunctionBegin; 1823f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1824f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1825273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1826273d9f13SBarry Smith if (size > 1) { 1827273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1828273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1829273d9f13SBarry Smith } else { 1830273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1831273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 18328c469469SLois Curfman McInnes } 18333a40ed3dSBarry Smith PetscFunctionReturn(0); 18348965ea79SLois Curfman McInnes } 18358965ea79SLois Curfman McInnes 18364a2ae208SSatish Balay #undef __FUNCT__ 18374a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 18386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 18398965ea79SLois Curfman McInnes { 18408965ea79SLois Curfman McInnes Mat mat; 18413501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1842dfbe8321SBarry Smith PetscErrorCode ierr; 18438965ea79SLois Curfman McInnes 18443a40ed3dSBarry Smith PetscFunctionBegin; 18458965ea79SLois Curfman McInnes *newmat = 0; 18467adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1847*d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 18487adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1849834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1850e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 18513501a2bdSLois Curfman McInnes mat->factor = A->factor; 1852c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1853273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18548965ea79SLois Curfman McInnes 1855*d0f46423SBarry Smith mat->rmap->rstart = A->rmap->rstart; 1856*d0f46423SBarry Smith mat->rmap->rend = A->rmap->rend; 18578965ea79SLois Curfman McInnes a->size = oldmat->size; 18588965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1859e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1860b9b97703SBarry Smith a->nvec = oldmat->nvec; 18613782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1862e04c1aa4SHong Zhang 1863*d0f46423SBarry Smith ierr = PetscMemcpy(mat->rmap->range,A->rmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1864*d0f46423SBarry Smith ierr = PetscMemcpy(mat->cmap->range,A->cmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 18657adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 18668965ea79SLois Curfman McInnes 1867329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 18685609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 186952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 187001b82886SBarry Smith 187101b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 187201b82886SBarry Smith ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr); 187301b82886SBarry Smith #endif 18748965ea79SLois Curfman McInnes *newmat = mat; 18753a40ed3dSBarry Smith PetscFunctionReturn(0); 18768965ea79SLois Curfman McInnes } 18778965ea79SLois Curfman McInnes 1878e090d566SSatish Balay #include "petscsys.h" 18798965ea79SLois Curfman McInnes 18804a2ae208SSatish Balay #undef __FUNCT__ 18814a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1882a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, const MatType type,Mat *newmat) 188390ace30eSBarry Smith { 18846849ba73SBarry Smith PetscErrorCode ierr; 188532dcc486SBarry Smith PetscMPIInt rank,size; 188613f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 188787828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 188890ace30eSBarry Smith MPI_Status status; 188990ace30eSBarry Smith 18903a40ed3dSBarry Smith PetscFunctionBegin; 1891d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1892d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 189390ace30eSBarry Smith 189490ace30eSBarry Smith /* determine ownership of all rows */ 189590ace30eSBarry Smith m = M/size + ((M % size) > rank); 189613f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 189713f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 189890ace30eSBarry Smith rowners[0] = 0; 189990ace30eSBarry Smith for (i=2; i<=size; i++) { 190090ace30eSBarry Smith rowners[i] += rowners[i-1]; 190190ace30eSBarry Smith } 190290ace30eSBarry Smith 1903f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1904f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1905be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1906878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 190790ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 190890ace30eSBarry Smith 190990ace30eSBarry Smith if (!rank) { 191087828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 191190ace30eSBarry Smith 191290ace30eSBarry Smith /* read in my part of the matrix numerical values */ 19130752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 191490ace30eSBarry Smith 191590ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 191690ace30eSBarry Smith vals_ptr = vals; 191790ace30eSBarry Smith for (i=0; i<m; i++) { 191890ace30eSBarry Smith for (j=0; j<N; j++) { 191990ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 192090ace30eSBarry Smith } 192190ace30eSBarry Smith } 192290ace30eSBarry Smith 192390ace30eSBarry Smith /* read in other processors and ship out */ 192490ace30eSBarry Smith for (i=1; i<size; i++) { 192590ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 19260752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19277adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 192890ace30eSBarry Smith } 19293a40ed3dSBarry Smith } else { 193090ace30eSBarry Smith /* receive numeric values */ 193187828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 193290ace30eSBarry Smith 193390ace30eSBarry Smith /* receive message of values*/ 19347adad957SLisandro Dalcin ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 193590ace30eSBarry Smith 193690ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 193790ace30eSBarry Smith vals_ptr = vals; 193890ace30eSBarry Smith for (i=0; i<m; i++) { 193990ace30eSBarry Smith for (j=0; j<N; j++) { 194090ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 194190ace30eSBarry Smith } 194290ace30eSBarry Smith } 194390ace30eSBarry Smith } 1944606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1945606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 19466d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19476d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19483a40ed3dSBarry Smith PetscFunctionReturn(0); 194990ace30eSBarry Smith } 195090ace30eSBarry Smith 19514a2ae208SSatish Balay #undef __FUNCT__ 19524a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1953a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense(PetscViewer viewer,const MatType type,Mat *newmat) 19548965ea79SLois Curfman McInnes { 19558965ea79SLois Curfman McInnes Mat A; 195687828ca2SBarry Smith PetscScalar *vals,*svals; 195719bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 19588965ea79SLois Curfman McInnes MPI_Status status; 195913f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 196013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 196113f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 196213f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 196313f74950SBarry Smith int fd; 19646849ba73SBarry Smith PetscErrorCode ierr; 19658965ea79SLois Curfman McInnes 19663a40ed3dSBarry Smith PetscFunctionBegin; 1967d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1968d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 19698965ea79SLois Curfman McInnes if (!rank) { 1970b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 19710752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1972552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 19738965ea79SLois Curfman McInnes } 19748965ea79SLois Curfman McInnes 197513f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 197690ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 197790ace30eSBarry Smith 197890ace30eSBarry Smith /* 197990ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 198090ace30eSBarry Smith */ 198190ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1982be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 19833a40ed3dSBarry Smith PetscFunctionReturn(0); 198490ace30eSBarry Smith } 198590ace30eSBarry Smith 19868965ea79SLois Curfman McInnes /* determine ownership of all rows */ 1987e44c0bd4SBarry Smith m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1988e44c0bd4SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1989ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 19908965ea79SLois Curfman McInnes rowners[0] = 0; 19918965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 19928965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 19938965ea79SLois Curfman McInnes } 19948965ea79SLois Curfman McInnes rstart = rowners[rank]; 19958965ea79SLois Curfman McInnes rend = rowners[rank+1]; 19968965ea79SLois Curfman McInnes 19978965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 199813f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 19998965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 20008965ea79SLois Curfman McInnes if (!rank) { 200113f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 20020752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 200313f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 20048965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 20051466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 2006606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2007ca161407SBarry Smith } else { 20081466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 20098965ea79SLois Curfman McInnes } 20108965ea79SLois Curfman McInnes 20118965ea79SLois Curfman McInnes if (!rank) { 20128965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 201313f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 201413f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 20158965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 20168965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 20178965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 20188965ea79SLois Curfman McInnes } 20198965ea79SLois Curfman McInnes } 2020606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 20218965ea79SLois Curfman McInnes 20228965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 20238965ea79SLois Curfman McInnes maxnz = 0; 20248965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 20250452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 20268965ea79SLois Curfman McInnes } 202713f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 20288965ea79SLois Curfman McInnes 20298965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 20308965ea79SLois Curfman McInnes nz = procsnz[0]; 203113f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 20320752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 20338965ea79SLois Curfman McInnes 20348965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 20358965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 20368965ea79SLois Curfman McInnes nz = procsnz[i]; 20370752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 203813f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 20398965ea79SLois Curfman McInnes } 2040606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20413a40ed3dSBarry Smith } else { 20428965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 20438965ea79SLois Curfman McInnes nz = 0; 20448965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20458965ea79SLois Curfman McInnes nz += ourlens[i]; 20468965ea79SLois Curfman McInnes } 204713f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 20488965ea79SLois Curfman McInnes 20498965ea79SLois Curfman McInnes /* receive message of column indices*/ 205013f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 205113f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 205229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 20538965ea79SLois Curfman McInnes } 20548965ea79SLois Curfman McInnes 20558965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 205613f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 20578965ea79SLois Curfman McInnes jj = 0; 20588965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20598965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 20608965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 20618965ea79SLois Curfman McInnes jj++; 20628965ea79SLois Curfman McInnes } 20638965ea79SLois Curfman McInnes } 20648965ea79SLois Curfman McInnes 20658965ea79SLois Curfman McInnes /* create our matrix */ 20668965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20678965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 20688965ea79SLois Curfman McInnes } 2069f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 2070f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 2071be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 2072878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 20738965ea79SLois Curfman McInnes A = *newmat; 20748965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20758965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 20768965ea79SLois Curfman McInnes } 20778965ea79SLois Curfman McInnes 20788965ea79SLois Curfman McInnes if (!rank) { 207987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 20808965ea79SLois Curfman McInnes 20818965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 20828965ea79SLois Curfman McInnes nz = procsnz[0]; 20830752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 20848965ea79SLois Curfman McInnes 20858965ea79SLois Curfman McInnes /* insert into matrix */ 20868965ea79SLois Curfman McInnes jj = rstart; 20878965ea79SLois Curfman McInnes smycols = mycols; 20888965ea79SLois Curfman McInnes svals = vals; 20898965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20908965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 20918965ea79SLois Curfman McInnes smycols += ourlens[i]; 20928965ea79SLois Curfman McInnes svals += ourlens[i]; 20938965ea79SLois Curfman McInnes jj++; 20948965ea79SLois Curfman McInnes } 20958965ea79SLois Curfman McInnes 20968965ea79SLois Curfman McInnes /* read in other processors and ship out */ 20978965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 20988965ea79SLois Curfman McInnes nz = procsnz[i]; 20990752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 21007adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 21018965ea79SLois Curfman McInnes } 2102606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21033a40ed3dSBarry Smith } else { 21048965ea79SLois Curfman McInnes /* receive numeric values */ 210584d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 21068965ea79SLois Curfman McInnes 21078965ea79SLois Curfman McInnes /* receive message of values*/ 21087adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2109ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 211029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 21118965ea79SLois Curfman McInnes 21128965ea79SLois Curfman McInnes /* insert into matrix */ 21138965ea79SLois Curfman McInnes jj = rstart; 21148965ea79SLois Curfman McInnes smycols = mycols; 21158965ea79SLois Curfman McInnes svals = vals; 21168965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 21178965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 21188965ea79SLois Curfman McInnes smycols += ourlens[i]; 21198965ea79SLois Curfman McInnes svals += ourlens[i]; 21208965ea79SLois Curfman McInnes jj++; 21218965ea79SLois Curfman McInnes } 21228965ea79SLois Curfman McInnes } 2123606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 2124606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 2125606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 2126606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 21278965ea79SLois Curfman McInnes 21286d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21296d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21303a40ed3dSBarry Smith PetscFunctionReturn(0); 21318965ea79SLois Curfman McInnes } 213290ace30eSBarry Smith 21336e4ee0c6SHong Zhang #undef __FUNCT__ 21346e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 21356e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 21366e4ee0c6SHong Zhang { 21376e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 21386e4ee0c6SHong Zhang Mat a,b; 21396e4ee0c6SHong Zhang PetscTruth flg; 21406e4ee0c6SHong Zhang PetscErrorCode ierr; 214190ace30eSBarry Smith 21426e4ee0c6SHong Zhang PetscFunctionBegin; 21436e4ee0c6SHong Zhang a = matA->A; 21446e4ee0c6SHong Zhang b = matB->A; 21456e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 21467adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 21476e4ee0c6SHong Zhang PetscFunctionReturn(0); 21486e4ee0c6SHong Zhang } 214990ace30eSBarry Smith 215009d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 215109d27a7eSBarry Smith 215209d27a7eSBarry Smith #undef __FUNCT__ 215309d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage" 215409d27a7eSBarry Smith /*@C 215509d27a7eSBarry Smith PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 215609d27a7eSBarry Smith Level: developer 215709d27a7eSBarry Smith 215809d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK 215909d27a7eSBarry Smith .seealso: PetscFinalize() 216009d27a7eSBarry Smith @*/ 216109d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 216209d27a7eSBarry Smith { 216309d27a7eSBarry Smith PetscErrorCode ierr; 216409d27a7eSBarry Smith 216509d27a7eSBarry Smith PetscFunctionBegin; 216609d27a7eSBarry Smith ierr = PLA_Finalize();CHKERRQ(ierr); 216709d27a7eSBarry Smith PetscFunctionReturn(0); 216809d27a7eSBarry Smith } 216909d27a7eSBarry Smith 217009d27a7eSBarry Smith #undef __FUNCT__ 217109d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage" 217209d27a7eSBarry Smith /*@C 217309d27a7eSBarry Smith PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 217409d27a7eSBarry Smith called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize() 217509d27a7eSBarry Smith when using static libraries. 217609d27a7eSBarry Smith 217709d27a7eSBarry Smith Input Parameter: 217809d27a7eSBarry Smith path - The dynamic library path, or PETSC_NULL 217909d27a7eSBarry Smith 218009d27a7eSBarry Smith Level: developer 218109d27a7eSBarry Smith 218209d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK 218309d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize() 218409d27a7eSBarry Smith @*/ 218509d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[]) 218609d27a7eSBarry Smith { 218704fea9ffSBarry Smith MPI_Comm comm = PETSC_COMM_WORLD; 2188eae6fb2eSBarry Smith PetscMPIInt size; 218909d27a7eSBarry Smith PetscErrorCode ierr; 219009d27a7eSBarry Smith 219109d27a7eSBarry Smith PetscFunctionBegin; 219209d27a7eSBarry Smith if (!PLA_Initialized(PETSC_NULL)) { 219309d27a7eSBarry Smith 219409d27a7eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 219504fea9ffSBarry Smith Plapack_nprows = 1; 219604fea9ffSBarry Smith Plapack_npcols = size; 219709d27a7eSBarry Smith 2198aeccfd6fSBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr); 2199aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 2200aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 220179b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG) 220279b0a62dSBarry Smith Plapack_ierror = 3; 220379b0a62dSBarry Smith #else 220479b0a62dSBarry Smith Plapack_ierror = 0; 220579b0a62dSBarry Smith #endif 2206eae6fb2eSBarry Smith ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr); 2207eae6fb2eSBarry Smith if (Plapack_ierror){ 2208eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 2209aeccfd6fSBarry Smith } else { 2210eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 2211aeccfd6fSBarry Smith } 2212aeccfd6fSBarry Smith 2213eae6fb2eSBarry Smith Plapack_nb_alg = 0; 221479b0a62dSBarry Smith ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr); 2215eae6fb2eSBarry Smith if (Plapack_nb_alg) { 2216eae6fb2eSBarry Smith ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr); 2217aeccfd6fSBarry Smith } 2218aeccfd6fSBarry Smith PetscOptionsEnd(); 2219aeccfd6fSBarry Smith 222004fea9ffSBarry Smith ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 222104fea9ffSBarry Smith ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 222209d27a7eSBarry Smith ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 222309d27a7eSBarry Smith } 222409d27a7eSBarry Smith PetscFunctionReturn(0); 222509d27a7eSBarry Smith } 222690ace30eSBarry Smith 222790ace30eSBarry Smith 222809d27a7eSBarry Smith #endif 2229