1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 447d993e7Ssuyashtn Portions of this code are under: 547d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 6ed3cc1f0SBarry Smith */ 7ed3cc1f0SBarry Smith 8c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 98949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 10baa3c1c6SHong Zhang #include <petscblaslapack.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 242ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 33d5ea218eSStefano Zampini PetscValidPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 44d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 72d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 84d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 96d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 11047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 11347d993e7Ssuyashtn #elif (PETSC_HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 1449566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 1559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 1579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 164d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 20647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 21047d993e7Ssuyashtn #elif (PETSC_HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 3659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 435d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 471cc2e6a90SBarry Smith 472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 492d71ae5a4SJacob Faibussowitsch { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 494637a0070SStefano Zampini const PetscScalar *ax; 495637a0070SStefano Zampini PetscScalar *ay; 496d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4996f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5069566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 511d71ae5a4SJacob Faibussowitsch { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516096963f5SLois Curfman McInnes 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5199566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5209566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 531d71ae5a4SJacob Faibussowitsch { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 533637a0070SStefano Zampini const PetscScalar *ax; 534637a0070SStefano Zampini PetscScalar *ay; 535d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 536096963f5SLois Curfman McInnes 5373a40ed3dSBarry Smith PetscFunctionBegin; 5386f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5399566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 551d71ae5a4SJacob Faibussowitsch { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 553637a0070SStefano Zampini PetscInt lda, len, i, n, m = A->rmap->n, radd; 55487828ca2SBarry Smith PetscScalar *x, zero = 0.0; 555637a0070SStefano Zampini const PetscScalar *av; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 5609566063dSJacob Faibussowitsch PetscCall(VecGetSize(v, &n)); 56108401ef6SPierre Jolivet PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart * m; 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 566ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 5689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5708965ea79SLois Curfman McInnes } 5718965ea79SLois Curfman McInnes 572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIDense(Mat mat) 573d71ae5a4SJacob Faibussowitsch { 5743501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 575ed3cc1f0SBarry Smith 5763a40ed3dSBarry Smith PetscFunctionBegin; 577aa482453SBarry Smith #if defined(PETSC_USE_LOG) 5783ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5798965ea79SLois Curfman McInnes #endif 5809566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 58128b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 58228b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 58801b82886SBarry Smith 5899566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5918baccfbdSHong Zhang 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6058baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6078baccfbdSHong Zhang #endif 608d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 610d24d4204SJose E. Roman #endif 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6146718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6232e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6242e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6252e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6312e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6323d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 6336718818eSStefano Zampini #endif 63447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 63547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 63647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 63747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 63847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 63947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 64047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 64147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 64247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 64347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 64447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 64547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 64647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 64747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 64847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 64947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 65047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 65147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 6523d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 65347d993e7Ssuyashtn #endif 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 664f8103e6bSStefano Zampini 665f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6678965ea79SLois Curfman McInnes } 66839ddd567SLois Curfman McInnes 66952c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 67052c5f739Sprj- 6719804daf3SBarry Smith #include <petscdraw.h> 672d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 673d71ae5a4SJacob Faibussowitsch { 67439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 675616b8fbbSStefano Zampini PetscMPIInt rank; 67619fd82e9SBarry Smith PetscViewerType vtype; 677ace3abfcSBarry Smith PetscBool iascii, isdraw; 678b0a32e0cSBarry Smith PetscViewer sviewer; 679f3ef73ceSBarry Smith PetscViewerFormat format; 6808965ea79SLois Curfman McInnes 6813a40ed3dSBarry Smith PetscFunctionBegin; 6829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 68532077d6dSBarry Smith if (iascii) { 6869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6879566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 688456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6894e220ebcSLois Curfman McInnes MatInfo info; 6909566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6929371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6939371c9d4SSatish Balay (PetscInt)info.memory)); 6949566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6966f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 698fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7008965ea79SLois Curfman McInnes } 701f1af5d2fSBarry Smith } else if (isdraw) { 702b0a32e0cSBarry Smith PetscDraw draw; 703ace3abfcSBarry Smith PetscBool isnull; 704f1af5d2fSBarry Smith 7059566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7069566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7073ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 708f1af5d2fSBarry Smith } 70977ed5343SBarry Smith 7107da1fb6eSBarry Smith { 7118965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7128965ea79SLois Curfman McInnes Mat A; 713d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 714ba8c8a56SBarry Smith PetscInt *cols; 715ba8c8a56SBarry Smith PetscScalar *vals; 7168965ea79SLois Curfman McInnes 7179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 718dd400576SPatrick Sanan if (rank == 0) { 7199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 7203a40ed3dSBarry Smith } else { 7219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 7228965ea79SLois Curfman McInnes } 7237adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 7249566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 7259566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 7268965ea79SLois Curfman McInnes 72739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72839ddd567SLois Curfman McInnes but it's quick for now */ 72951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7302205254eSKarl Rupp 7312205254eSKarl Rupp row = mat->rmap->rstart; 7322205254eSKarl Rupp m = mdn->A->rmap->n; 7338965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 7349566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7359566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7369566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 73739ddd567SLois Curfman McInnes row++; 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 7409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7429566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 743dd400576SPatrick Sanan if (rank == 0) { 7449566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7459566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7468965ea79SLois Curfman McInnes } 7479566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7489566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7499566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7508965ea79SLois Curfman McInnes } 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7528965ea79SLois Curfman McInnes } 7538965ea79SLois Curfman McInnes 754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 755d71ae5a4SJacob Faibussowitsch { 756ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7578965ea79SLois Curfman McInnes 758433994e6SBarry Smith PetscFunctionBegin; 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7630f5bd95cSBarry Smith 76432077d6dSBarry Smith if (iascii || issocket || isdraw) { 7659566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7661baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7688965ea79SLois Curfman McInnes } 7698965ea79SLois Curfman McInnes 770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 771d71ae5a4SJacob Faibussowitsch { 7723501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7733501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7743966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7758965ea79SLois Curfman McInnes 7763a40ed3dSBarry Smith PetscFunctionBegin; 7774e220ebcSLois Curfman McInnes info->block_size = 1.0; 7782205254eSKarl Rupp 7799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7802205254eSKarl Rupp 7819371c9d4SSatish Balay isend[0] = info->nz_used; 7829371c9d4SSatish Balay isend[1] = info->nz_allocated; 7839371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7849371c9d4SSatish Balay isend[3] = info->memory; 7859371c9d4SSatish Balay isend[4] = info->mallocs; 7868965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7874e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7884e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7894e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7904e220ebcSLois Curfman McInnes info->memory = isend[3]; 7914e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7928965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7942205254eSKarl Rupp 7954e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7964e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7974e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7984e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7994e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8008965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 8011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8022205254eSKarl Rupp 8034e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8044e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8054e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8064e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8074e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8088965ea79SLois Curfman McInnes } 8094e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8104e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8114e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8138965ea79SLois Curfman McInnes } 8148965ea79SLois Curfman McInnes 815d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 816d71ae5a4SJacob Faibussowitsch { 81739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 8188965ea79SLois Curfman McInnes 8193a40ed3dSBarry Smith PetscFunctionBegin; 82012c028f9SKris Buschelman switch (op) { 821512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82443674050SBarry Smith MatCheckPreallocated(A, 1); 8259566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82612c028f9SKris Buschelman break; 82712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82843674050SBarry Smith MatCheckPreallocated(A, 1); 8294e0d8c25SBarry Smith a->roworiented = flg; 8309566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 83112c028f9SKris Buschelman break; 8328c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 83313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 835d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 836d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 837d71ae5a4SJacob Faibussowitsch break; 838d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 839d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 840d71ae5a4SJacob Faibussowitsch break; 84177e54ba9SKris Buschelman case MAT_SYMMETRIC: 84277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8439a4540c5SBarry Smith case MAT_HERMITIAN: 8449a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 845b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 846b94d7dedSBarry Smith case MAT_SPD: 847600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8485d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 849b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 850b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8519566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 85277e54ba9SKris Buschelman break; 853d71ae5a4SJacob Faibussowitsch default: 854d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8553a40ed3dSBarry Smith } 8563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8578965ea79SLois Curfman McInnes } 8588965ea79SLois Curfman McInnes 859d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 860d71ae5a4SJacob Faibussowitsch { 8615b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 862637a0070SStefano Zampini const PetscScalar *l; 863637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 864637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8655b2fa520SLois Curfman McInnes 8665b2fa520SLois Curfman McInnes PetscFunctionBegin; 8679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8689566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8699566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8705b2fa520SLois Curfman McInnes if (ll) { 8719566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 87208401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8745b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8755b2fa520SLois Curfman McInnes x = l[i]; 876637a0070SStefano Zampini v = vv + i; 8779371c9d4SSatish Balay for (j = 0; j < n; j++) { 8789371c9d4SSatish Balay (*v) *= x; 8799371c9d4SSatish Balay v += lda; 8809371c9d4SSatish Balay } 8815b2fa520SLois Curfman McInnes } 8829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8839566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8845b2fa520SLois Curfman McInnes } 8855b2fa520SLois Curfman McInnes if (rr) { 886637a0070SStefano Zampini const PetscScalar *ar; 887637a0070SStefano Zampini 8889566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 88908401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8916f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8929566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8949566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8965b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8975b2fa520SLois Curfman McInnes x = r[i]; 898637a0070SStefano Zampini v = vv + i * lda; 8992205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 9005b2fa520SLois Curfman McInnes } 9019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9029566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9035b2fa520SLois Curfman McInnes } 9049566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9065b2fa520SLois Curfman McInnes } 9075b2fa520SLois Curfman McInnes 908d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 909d71ae5a4SJacob Faibussowitsch { 9103501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 91113f74950SBarry Smith PetscInt i, j; 912616b8fbbSStefano Zampini PetscMPIInt size; 913329f5518SBarry Smith PetscReal sum = 0.0; 914637a0070SStefano Zampini const PetscScalar *av, *v; 9153501a2bdSLois Curfman McInnes 9163a40ed3dSBarry Smith PetscFunctionBegin; 9179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 918637a0070SStefano Zampini v = av; 9199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 920616b8fbbSStefano Zampini if (size == 1) { 9219566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 9223501a2bdSLois Curfman McInnes } else { 9233501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 924d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 9259371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 9269371c9d4SSatish Balay v++; 9273501a2bdSLois Curfman McInnes } 9281c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 9298f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 9309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 9313a40ed3dSBarry Smith } else if (type == NORM_1) { 932329f5518SBarry Smith PetscReal *tmp, *tmp2; 9339566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 934064f8208SBarry Smith *nrm = 0.0; 935637a0070SStefano Zampini v = av; 936d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 937d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9389371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9399371c9d4SSatish Balay v++; 9403501a2bdSLois Curfman McInnes } 9413501a2bdSLois Curfman McInnes } 9421c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 943d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 944064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9453501a2bdSLois Curfman McInnes } 9469566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9483a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 949329f5518SBarry Smith PetscReal ntemp; 9509566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 952ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9533501a2bdSLois Curfman McInnes } 9549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9563501a2bdSLois Curfman McInnes } 9573501a2bdSLois Curfman McInnes 958d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 959d71ae5a4SJacob Faibussowitsch { 9603501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9613501a2bdSLois Curfman McInnes Mat B; 962d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 963637a0070SStefano Zampini PetscInt j, i, lda; 96487828ca2SBarry Smith PetscScalar *v; 9653501a2bdSLois Curfman McInnes 9663a40ed3dSBarry Smith PetscFunctionBegin; 9677fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 968cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9719566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9729566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 973637a0070SStefano Zampini } else B = *matout; 9743501a2bdSLois Curfman McInnes 9759371c9d4SSatish Balay m = a->A->rmap->n; 9769371c9d4SSatish Balay n = a->A->cmap->n; 9779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9789566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9803501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9811acff37aSSatish Balay for (j = 0; j < n; j++) { 9829566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 983637a0070SStefano Zampini v += lda; 9843501a2bdSLois Curfman McInnes } 9859566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9869566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 989cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9903501a2bdSLois Curfman McInnes *matout = B; 9913501a2bdSLois Curfman McInnes } else { 9929566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9933501a2bdSLois Curfman McInnes } 9943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 995096963f5SLois Curfman McInnes } 996096963f5SLois Curfman McInnes 9976849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 99852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 9998965ea79SLois Curfman McInnes 1000d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_MPIDense(Mat A) 1001d71ae5a4SJacob Faibussowitsch { 1002273d9f13SBarry Smith PetscFunctionBegin; 10039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 100548a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007273d9f13SBarry Smith } 1008273d9f13SBarry Smith 1009d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1010d71ae5a4SJacob Faibussowitsch { 1011488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1012488007eeSBarry Smith 1013488007eeSBarry Smith PetscFunctionBegin; 10149566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1016488007eeSBarry Smith } 1017488007eeSBarry Smith 1018d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIDense(Mat mat) 1019d71ae5a4SJacob Faibussowitsch { 1020ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1021ba337c44SJed Brown 1022ba337c44SJed Brown PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 10243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1025ba337c44SJed Brown } 1026ba337c44SJed Brown 1027d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIDense(Mat A) 1028d71ae5a4SJacob Faibussowitsch { 1029ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1030ba337c44SJed Brown 1031ba337c44SJed Brown PetscFunctionBegin; 10329566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 10333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1034ba337c44SJed Brown } 1035ba337c44SJed Brown 1036d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1037d71ae5a4SJacob Faibussowitsch { 1038ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1039ba337c44SJed Brown 1040ba337c44SJed Brown PetscFunctionBegin; 10419566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1043ba337c44SJed Brown } 1044ba337c44SJed Brown 1045d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1046d71ae5a4SJacob Faibussowitsch { 1047637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 104849a6ff4bSBarry Smith 104949a6ff4bSBarry Smith PetscFunctionBegin; 105028b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 105128b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10529566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 10533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105449a6ff4bSBarry Smith } 105549a6ff4bSBarry Smith 1056857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 105752c5f739Sprj- 1058d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1059d71ae5a4SJacob Faibussowitsch { 1060a873a8cdSSam Reynolds PetscInt i, m, n; 10610716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10620716a85fSBarry Smith PetscReal *work; 10630716a85fSBarry Smith 10640716a85fSBarry Smith PetscFunctionBegin; 10659566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1067857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10689566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1069857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10709566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1071a873a8cdSSam Reynolds } else { 10729566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1073a873a8cdSSam Reynolds } 1074857cbf51SRichard Tran Mills if (type == NORM_2) { 10750716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10760716a85fSBarry Smith } 1077857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10790716a85fSBarry Smith } else { 10801c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10810716a85fSBarry Smith } 10829566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1083857cbf51SRichard Tran Mills if (type == NORM_2) { 1084a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1085857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1086a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10870716a85fSBarry Smith } 10883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10890716a85fSBarry Smith } 10900716a85fSBarry Smith 1091d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1092d71ae5a4SJacob Faibussowitsch { 109373a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 109473a71a0fSBarry Smith 109573a71a0fSBarry Smith PetscFunctionBegin; 10969566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 10973faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 10983faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 10993faff063SStefano Zampini #endif 11003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110173a71a0fSBarry Smith } 110273a71a0fSBarry Smith 1103d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1104d71ae5a4SJacob Faibussowitsch { 11053b49f96aSBarry Smith PetscFunctionBegin; 11063b49f96aSBarry Smith *missing = PETSC_FALSE; 11073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11083b49f96aSBarry Smith } 11093b49f96aSBarry Smith 11104222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1111cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11126718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1113a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11146718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11156718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1116cc48ffa7SToby Isaac 111709dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 111809dc0095SBarry Smith MatGetRow_MPIDense, 111909dc0095SBarry Smith MatRestoreRow_MPIDense, 112009dc0095SBarry Smith MatMult_MPIDense, 112197304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11227c922b88SBarry Smith MatMultTranspose_MPIDense, 11237c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1124f4259b30SLisandro Dalcin NULL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin NULL, 1127f4259b30SLisandro Dalcin /* 10*/ NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin NULL, 1130f4259b30SLisandro Dalcin NULL, 113109dc0095SBarry Smith MatTranspose_MPIDense, 113297304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11336e4ee0c6SHong Zhang MatEqual_MPIDense, 113409dc0095SBarry Smith MatGetDiagonal_MPIDense, 11355b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113609dc0095SBarry Smith MatNorm_MPIDense, 113797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113809dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113909dc0095SBarry Smith MatSetOption_MPIDense, 114009dc0095SBarry Smith MatZeroEntries_MPIDense, 1141d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1142f4259b30SLisandro Dalcin NULL, 1143f4259b30SLisandro Dalcin NULL, 1144f4259b30SLisandro Dalcin NULL, 1145f4259b30SLisandro Dalcin NULL, 11464994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1147f4259b30SLisandro Dalcin NULL, 1148f4259b30SLisandro Dalcin NULL, 1149c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1150f4259b30SLisandro Dalcin NULL, 1151d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin NULL, 1154f4259b30SLisandro Dalcin NULL, 1155f4259b30SLisandro Dalcin NULL, 1156d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11577dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1158f4259b30SLisandro Dalcin NULL, 115909dc0095SBarry Smith MatGetValues_MPIDense, 1160a76f77c3SStefano Zampini MatCopy_MPIDense, 1161f4259b30SLisandro Dalcin /* 44*/ NULL, 116209dc0095SBarry Smith MatScale_MPIDense, 11632f605a99SJose E. Roman MatShift_MPIDense, 1164f4259b30SLisandro Dalcin NULL, 1165f4259b30SLisandro Dalcin NULL, 116673a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1167f4259b30SLisandro Dalcin NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin NULL, 1171f4259b30SLisandro Dalcin /* 54*/ NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin NULL, 1174f4259b30SLisandro Dalcin NULL, 1175f4259b30SLisandro Dalcin NULL, 11767dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1177b9b97703SBarry Smith MatDestroy_MPIDense, 1178b9b97703SBarry Smith MatView_MPIDense, 1179f4259b30SLisandro Dalcin NULL, 1180f4259b30SLisandro Dalcin NULL, 1181f4259b30SLisandro Dalcin /* 64*/ NULL, 1182f4259b30SLisandro Dalcin NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin NULL, 1185f4259b30SLisandro Dalcin NULL, 1186f4259b30SLisandro Dalcin /* 69*/ NULL, 1187f4259b30SLisandro Dalcin NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin /* 74*/ NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin NULL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin /* 79*/ NULL, 1197f4259b30SLisandro Dalcin NULL, 1198f4259b30SLisandro Dalcin NULL, 1199f4259b30SLisandro Dalcin NULL, 12005bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin NULL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin /* 89*/ NULL, 1207f4259b30SLisandro Dalcin NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin NULL, 1211f4259b30SLisandro Dalcin /* 94*/ NULL, 1212f4259b30SLisandro Dalcin NULL, 12136718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1214cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1215f4259b30SLisandro Dalcin NULL, 12164222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1217f4259b30SLisandro Dalcin NULL, 1218f4259b30SLisandro Dalcin NULL, 1219ba337c44SJed Brown MatConjugate_MPIDense, 1220f4259b30SLisandro Dalcin NULL, 1221f4259b30SLisandro Dalcin /*104*/ NULL, 1222ba337c44SJed Brown MatRealPart_MPIDense, 1223ba337c44SJed Brown MatImaginaryPart_MPIDense, 1224f4259b30SLisandro Dalcin NULL, 1225f4259b30SLisandro Dalcin NULL, 1226f4259b30SLisandro Dalcin /*109*/ NULL, 1227f4259b30SLisandro Dalcin NULL, 1228f4259b30SLisandro Dalcin NULL, 122949a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12303b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1231f4259b30SLisandro Dalcin /*114*/ NULL, 1232f4259b30SLisandro Dalcin NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin NULL, 1236f4259b30SLisandro Dalcin /*119*/ NULL, 1237f4259b30SLisandro Dalcin NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240f4259b30SLisandro Dalcin NULL, 1241f4259b30SLisandro Dalcin /*124*/ NULL, 1242a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1243f4259b30SLisandro Dalcin NULL, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin NULL, 1246f4259b30SLisandro Dalcin /*129*/ NULL, 1247f4259b30SLisandro Dalcin NULL, 12486718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1249cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1250f4259b30SLisandro Dalcin NULL, 1251f4259b30SLisandro Dalcin /*134*/ NULL, 1252f4259b30SLisandro Dalcin NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin NULL, 1255f4259b30SLisandro Dalcin NULL, 1256f4259b30SLisandro Dalcin /*139*/ NULL, 1257f4259b30SLisandro Dalcin NULL, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 1260f4259b30SLisandro Dalcin NULL, 12614222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1262f4259b30SLisandro Dalcin /*145*/ NULL, 1263f4259b30SLisandro Dalcin NULL, 126499a7f59eSMark Adams NULL, 126599a7f59eSMark Adams NULL, 12667fb60732SBarry Smith NULL, 1267dec0b466SHong Zhang /*150*/ NULL, 1268dec0b466SHong Zhang NULL}; 12698965ea79SLois Curfman McInnes 1270d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1271d71ae5a4SJacob Faibussowitsch { 1272637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 127347d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1274a23d5eceSKris Buschelman 1275a23d5eceSKris Buschelman PetscFunctionBegin; 127628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 12789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1279637a0070SStefano Zampini if (!a->A) { 12809566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 12819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1282637a0070SStefano Zampini } 128347d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 128447d993e7Ssuyashtn PetscBool iscuda; 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 128647d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 128747d993e7Ssuyashtn #endif 128847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 128947d993e7Ssuyashtn PetscBool iship; 129047d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 129147d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 129247d993e7Ssuyashtn #endif 129347d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 12949566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 129547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 12963faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 12973faff063SStefano Zampini #endif 1298637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 12996f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1301a23d5eceSKris Buschelman } 1302a23d5eceSKris Buschelman 1303d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1304d71ae5a4SJacob Faibussowitsch { 13054e29119aSPierre Jolivet Mat B, C; 13064e29119aSPierre Jolivet 13074e29119aSPierre Jolivet PetscFunctionBegin; 13089566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13099566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13114e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13124e29119aSPierre Jolivet C = *newmat; 13134e29119aSPierre Jolivet } else C = NULL; 13149566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13164e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13179566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13184e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13204e29119aSPierre Jolivet } 13214e29119aSPierre Jolivet 1322d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1323d71ae5a4SJacob Faibussowitsch { 13244e29119aSPierre Jolivet Mat B, C; 13254e29119aSPierre Jolivet 13264e29119aSPierre Jolivet PetscFunctionBegin; 13279566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 13289566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 13294e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13304e29119aSPierre Jolivet C = *newmat; 13314e29119aSPierre Jolivet } else C = NULL; 13329566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13344e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13359566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13364e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13384e29119aSPierre Jolivet } 13394e29119aSPierre Jolivet 134065b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1341d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1342d71ae5a4SJacob Faibussowitsch { 13438ea901baSHong Zhang Mat mat_elemental; 134432d7a744SHong Zhang PetscScalar *v; 134532d7a744SHong Zhang PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols; 13468ea901baSHong Zhang 13478baccfbdSHong Zhang PetscFunctionBegin; 1348378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1349378336b6SHong Zhang mat_elemental = *newmat; 13509566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1351378336b6SHong Zhang } else { 13529566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 13539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 13549566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 13559566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 13569566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1357378336b6SHong Zhang } 1358378336b6SHong Zhang 13599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 136032d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 136132d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 13628ea901baSHong Zhang 1363637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 13649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 13659566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 13669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 13679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 13689566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 13699566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 13708ea901baSHong Zhang 1371511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 13729566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 13738ea901baSHong Zhang } else { 13748ea901baSHong Zhang *newmat = mat_elemental; 13758ea901baSHong Zhang } 13763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13778baccfbdSHong Zhang } 137865b80a83SHong Zhang #endif 13798baccfbdSHong Zhang 1380d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1381d71ae5a4SJacob Faibussowitsch { 138286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 138386aefd0dSHong Zhang 138486aefd0dSHong Zhang PetscFunctionBegin; 13859566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 13863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138786aefd0dSHong Zhang } 138886aefd0dSHong Zhang 1389d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1390d71ae5a4SJacob Faibussowitsch { 139186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 139286aefd0dSHong Zhang 139386aefd0dSHong Zhang PetscFunctionBegin; 13949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 13953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139686aefd0dSHong Zhang } 139786aefd0dSHong Zhang 1398d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1399d71ae5a4SJacob Faibussowitsch { 140094e2cb23SJakub Kruzik Mat_MPIDense *mat; 140194e2cb23SJakub Kruzik PetscInt m, nloc, N; 140294e2cb23SJakub Kruzik 140394e2cb23SJakub Kruzik PetscFunctionBegin; 14049566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14059566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 140694e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 140794e2cb23SJakub Kruzik PetscInt sum; 140894e2cb23SJakub Kruzik 140948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 141094e2cb23SJakub Kruzik /* Check sum(n) = N */ 14111c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 141208401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 141394e2cb23SJakub Kruzik 14149566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 14159566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 141694e2cb23SJakub Kruzik } 141794e2cb23SJakub Kruzik 141894e2cb23SJakub Kruzik /* numeric phase */ 141994e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 14209566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 14213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142294e2cb23SJakub Kruzik } 142394e2cb23SJakub Kruzik 1424d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1425d71ae5a4SJacob Faibussowitsch { 14266947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14276947451fSStefano Zampini PetscInt lda; 14286947451fSStefano Zampini 14296947451fSStefano Zampini PetscFunctionBegin; 143028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 143128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1432*d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14336947451fSStefano Zampini a->vecinuse = col + 1; 14349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14359566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 14369566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14376947451fSStefano Zampini *v = a->cvec; 14383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14396947451fSStefano Zampini } 14406947451fSStefano Zampini 1441d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1442d71ae5a4SJacob Faibussowitsch { 14436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14446947451fSStefano Zampini 14456947451fSStefano Zampini PetscFunctionBegin; 144628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 144728b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 14486947451fSStefano Zampini a->vecinuse = 0; 14499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 14509566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1451742765d3SMatthew Knepley if (v) *v = NULL; 14523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14536947451fSStefano Zampini } 14546947451fSStefano Zampini 1455d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1456d71ae5a4SJacob Faibussowitsch { 14576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14586947451fSStefano Zampini PetscInt lda; 14596947451fSStefano Zampini 14606947451fSStefano Zampini PetscFunctionBegin; 146128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 146228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1463*d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14646947451fSStefano Zampini a->vecinuse = col + 1; 14659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 14679566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14689566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 14696947451fSStefano Zampini *v = a->cvec; 14703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14716947451fSStefano Zampini } 14726947451fSStefano Zampini 1473d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1474d71ae5a4SJacob Faibussowitsch { 14756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14766947451fSStefano Zampini 14776947451fSStefano Zampini PetscFunctionBegin; 14785f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 14795f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 14806947451fSStefano Zampini a->vecinuse = 0; 14819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 14829566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 14839566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1484742765d3SMatthew Knepley if (v) *v = NULL; 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14866947451fSStefano Zampini } 14876947451fSStefano Zampini 1488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1489d71ae5a4SJacob Faibussowitsch { 14906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14916947451fSStefano Zampini PetscInt lda; 14926947451fSStefano Zampini 14936947451fSStefano Zampini PetscFunctionBegin; 14945f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 14955f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1496*d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14976947451fSStefano Zampini a->vecinuse = col + 1; 14989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15009566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 15016947451fSStefano Zampini *v = a->cvec; 15023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15036947451fSStefano Zampini } 15046947451fSStefano Zampini 1505d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1506d71ae5a4SJacob Faibussowitsch { 15076947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15086947451fSStefano Zampini 15096947451fSStefano Zampini PetscFunctionBegin; 15105f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15115f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15126947451fSStefano Zampini a->vecinuse = 0; 15139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15149566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1515742765d3SMatthew Knepley if (v) *v = NULL; 15163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15176947451fSStefano Zampini } 15186947451fSStefano Zampini 1519d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1520d71ae5a4SJacob Faibussowitsch { 15215ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1522616b8fbbSStefano Zampini Mat_MPIDense *c; 1523616b8fbbSStefano Zampini MPI_Comm comm; 1524a2748737SPierre Jolivet PetscInt pbegin, pend; 15255ea7661aSPierre Jolivet 15265ea7661aSPierre Jolivet PetscFunctionBegin; 15279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 15285f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15295f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1530a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1531a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 15325ea7661aSPierre Jolivet if (!a->cmat) { 15339566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 15349566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1535a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1536a2748737SPierre Jolivet else { 1537a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1538a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1539a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1540a2748737SPierre Jolivet } 15419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1543a2748737SPierre Jolivet } else { 1544a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1545a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1546a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1547a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1548a2748737SPierre Jolivet } 1549a2748737SPierre Jolivet if (!same) { 1550a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1551a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1552a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1553a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1554a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1555a2748737SPierre Jolivet } 1556a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 15579566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 15589566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 15599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 15615ea7661aSPierre Jolivet } 1562a2748737SPierre Jolivet } 1563616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15645f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1565a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 15663faff063SStefano Zampini 1567616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1568616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 15693faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15703faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 15713faff063SStefano Zampini #endif 15725ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 15735ea7661aSPierre Jolivet *v = a->cmat; 15743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15755ea7661aSPierre Jolivet } 15765ea7661aSPierre Jolivet 1577d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1578d71ae5a4SJacob Faibussowitsch { 15795ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1580616b8fbbSStefano Zampini Mat_MPIDense *c; 15815ea7661aSPierre Jolivet 15825ea7661aSPierre Jolivet PetscFunctionBegin; 15835f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 15845f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 15855f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 15865ea7661aSPierre Jolivet a->matinuse = 0; 1587616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1589742765d3SMatthew Knepley if (v) *v = NULL; 15903faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15913faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 15923faff063SStefano Zampini #endif 15933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15945ea7661aSPierre Jolivet } 15955ea7661aSPierre Jolivet 1596002bc6daSRichard Tran Mills /*MC 1597002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1598002bc6daSRichard Tran Mills 15992ef1f0ffSBarry Smith Options Database Key: 160011a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1601002bc6daSRichard Tran Mills 1602002bc6daSRichard Tran Mills Level: beginner 1603002bc6daSRichard Tran Mills 16042ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1605002bc6daSRichard Tran Mills M*/ 16064742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1607d71ae5a4SJacob Faibussowitsch { 1608273d9f13SBarry Smith Mat_MPIDense *a; 1609273d9f13SBarry Smith 1610273d9f13SBarry Smith PetscFunctionBegin; 16114dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1612b0a32e0cSBarry Smith mat->data = (void *)a; 16139566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops, &MatOps_Values, sizeof(struct _MatOps))); 1614273d9f13SBarry Smith 1615273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1616273d9f13SBarry Smith 1617273d9f13SBarry Smith /* build cache for off array entries formed */ 1618273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16192205254eSKarl Rupp 16209566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1621273d9f13SBarry Smith 1622273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1623f4259b30SLisandro Dalcin a->lvec = NULL; 1624f4259b30SLisandro Dalcin a->Mvctx = NULL; 1625273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1626273d9f13SBarry Smith 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 16479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 16488baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 16508baccfbdSHong Zhang #endif 1651d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 16529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1653d24d4204SJose E. Roman #endif 1654637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1656637a0070SStefano Zampini #endif 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16606718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16636718818eSStefano Zampini #endif 166447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 166547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 166647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 166747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 166847d993e7Ssuyashtn #endif 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 16723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1673273d9f13SBarry Smith } 1674273d9f13SBarry Smith 1675209238afSKris Buschelman /*MC 1676002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1677209238afSKris Buschelman 167811a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 167911a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1680209238afSKris Buschelman 16812ef1f0ffSBarry Smith Options Database Key: 168211a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1683209238afSKris Buschelman 1684209238afSKris Buschelman Level: beginner 1685209238afSKris Buschelman 16862ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 16876947451fSStefano Zampini M*/ 16886947451fSStefano Zampini 1689273d9f13SBarry Smith /*@C 1690273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1691273d9f13SBarry Smith 16928f490ea3SStefano Zampini Collective 1693273d9f13SBarry Smith 1694273d9f13SBarry Smith Input Parameters: 16951c4f3114SJed Brown . B - the matrix 16962ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1697273d9f13SBarry Smith to control all matrix memory allocation. 1698273d9f13SBarry Smith 16992ef1f0ffSBarry Smith Level: intermediate 17002ef1f0ffSBarry Smith 1701273d9f13SBarry Smith Notes: 17022ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1703273d9f13SBarry Smith storage by columns. 1704273d9f13SBarry Smith 1705273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1706273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 17072ef1f0ffSBarry Smith set `data` to `NULL`. 1708273d9f13SBarry Smith 17092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1710273d9f13SBarry Smith @*/ 1711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1712d71ae5a4SJacob Faibussowitsch { 1713273d9f13SBarry Smith PetscFunctionBegin; 1714d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1715cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 17163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1717273d9f13SBarry Smith } 1718273d9f13SBarry Smith 1719d3042a70SBarry Smith /*@ 172011a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1721d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1722d3042a70SBarry Smith into a matrix 1723d3042a70SBarry Smith 1724d3042a70SBarry Smith Not Collective 1725d3042a70SBarry Smith 1726d3042a70SBarry Smith Input Parameters: 1727d3042a70SBarry Smith + mat - the matrix 1728d3042a70SBarry Smith - array - the array in column major order 1729d3042a70SBarry Smith 17302ef1f0ffSBarry Smith Level: developer 17312ef1f0ffSBarry Smith 173211a5261eSBarry Smith Note: 173311a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1734d3042a70SBarry Smith freed when the matrix is destroyed. 1735d3042a70SBarry Smith 17362ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 173711a5261eSBarry Smith `MatDenseReplaceArray()` 1738d3042a70SBarry Smith @*/ 1739d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1740d71ae5a4SJacob Faibussowitsch { 1741d3042a70SBarry Smith PetscFunctionBegin; 1742d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1743cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 174547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1746637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1747637a0070SStefano Zampini #endif 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1749d3042a70SBarry Smith } 1750d3042a70SBarry Smith 1751d3042a70SBarry Smith /*@ 175211a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1753d3042a70SBarry Smith 1754d3042a70SBarry Smith Not Collective 1755d3042a70SBarry Smith 17562fe279fdSBarry Smith Input Parameter: 1757d3042a70SBarry Smith . mat - the matrix 1758d3042a70SBarry Smith 17592ef1f0ffSBarry Smith Level: developer 17602ef1f0ffSBarry Smith 176111a5261eSBarry Smith Note: 176211a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1763d3042a70SBarry Smith 17642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1765d3042a70SBarry Smith @*/ 1766d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1767d71ae5a4SJacob Faibussowitsch { 1768d3042a70SBarry Smith PetscFunctionBegin; 1769d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1770cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 17719566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 17723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1773d3042a70SBarry Smith } 1774d3042a70SBarry Smith 1775d5ea218eSStefano Zampini /*@ 1776d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1777d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1778d5ea218eSStefano Zampini into a matrix 1779d5ea218eSStefano Zampini 1780d5ea218eSStefano Zampini Not Collective 1781d5ea218eSStefano Zampini 1782d5ea218eSStefano Zampini Input Parameters: 1783d5ea218eSStefano Zampini + mat - the matrix 1784d5ea218eSStefano Zampini - array - the array in column major order 1785d5ea218eSStefano Zampini 17862ef1f0ffSBarry Smith Level: developer 17872ef1f0ffSBarry Smith 178811a5261eSBarry Smith Note: 178911a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1790d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1791d5ea218eSStefano Zampini 17922ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1793d5ea218eSStefano Zampini @*/ 1794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1795d71ae5a4SJacob Faibussowitsch { 1796d5ea218eSStefano Zampini PetscFunctionBegin; 1797d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1798cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17999566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 180047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1801d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1802d5ea218eSStefano Zampini #endif 18033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1804d5ea218eSStefano Zampini } 1805d5ea218eSStefano Zampini 1806637a0070SStefano Zampini /*@C 180711a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 18088965ea79SLois Curfman McInnes 1809d083f849SBarry Smith Collective 1810db81eaa0SLois Curfman McInnes 18118965ea79SLois Curfman McInnes Input Parameters: 1812db81eaa0SLois Curfman McInnes + comm - MPI communicator 18132ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 18142ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 18152ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 18162ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 18172ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1818dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18198965ea79SLois Curfman McInnes 18208965ea79SLois Curfman McInnes Output Parameter: 1821477f1c0bSLois Curfman McInnes . A - the matrix 18228965ea79SLois Curfman McInnes 18232ef1f0ffSBarry Smith Level: intermediate 18242ef1f0ffSBarry Smith 1825b259b22eSLois Curfman McInnes Notes: 18262ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 182739ddd567SLois Curfman McInnes storage by columns. 182811a5261eSBarry Smith 182911a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1830002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 18318965ea79SLois Curfman McInnes 183218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 183318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18342ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 183518f449edSLois Curfman McInnes 18368965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18378965ea79SLois Curfman McInnes (possibly both). 18388965ea79SLois Curfman McInnes 18392ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 18408965ea79SLois Curfman McInnes @*/ 1841d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1842d71ae5a4SJacob Faibussowitsch { 18433a40ed3dSBarry Smith PetscFunctionBegin; 18449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18466f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 18479566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 18486f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 18493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18508965ea79SLois Curfman McInnes } 18518965ea79SLois Curfman McInnes 1852d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1853d71ae5a4SJacob Faibussowitsch { 18548965ea79SLois Curfman McInnes Mat mat; 18553501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 18568965ea79SLois Curfman McInnes 18573a40ed3dSBarry Smith PetscFunctionBegin; 1858f4259b30SLisandro Dalcin *newmat = NULL; 18599566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 18609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 18619566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1862834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 18635aa7edbeSHong Zhang 1864d5f3da31SBarry Smith mat->factortype = A->factortype; 1865c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1866273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18678965ea79SLois Curfman McInnes 1868e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 18693782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1870e04c1aa4SHong Zhang 18719566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 18729566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 18738965ea79SLois Curfman McInnes 18749566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 187501b82886SBarry Smith 18768965ea79SLois Curfman McInnes *newmat = mat; 18773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18788965ea79SLois Curfman McInnes } 18798965ea79SLois Curfman McInnes 1880d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1881d71ae5a4SJacob Faibussowitsch { 188287d5ce66SSatish Balay PetscBool isbinary; 188387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 188487d5ce66SSatish Balay PetscBool ishdf5; 188587d5ce66SSatish Balay #endif 1886eb91f321SVaclav Hapla 1887eb91f321SVaclav Hapla PetscFunctionBegin; 1888eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1889eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1890eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 18919566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 18929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 189387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 18949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 189587d5ce66SSatish Balay #endif 1896eb91f321SVaclav Hapla if (isbinary) { 18979566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1898eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 189987d5ce66SSatish Balay } else if (ishdf5) { 19009566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1901eb91f321SVaclav Hapla #endif 190298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1904eb91f321SVaclav Hapla } 1905eb91f321SVaclav Hapla 1906d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 1907d71ae5a4SJacob Faibussowitsch { 19086e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 19096e4ee0c6SHong Zhang Mat a, b; 191090ace30eSBarry Smith 19116e4ee0c6SHong Zhang PetscFunctionBegin; 19126e4ee0c6SHong Zhang a = matA->A; 19136e4ee0c6SHong Zhang b = matB->A; 19142cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 19152cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 19163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19176e4ee0c6SHong Zhang } 191890ace30eSBarry Smith 1919d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 1920d71ae5a4SJacob Faibussowitsch { 19216718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 1922baa3c1c6SHong Zhang 1923baa3c1c6SHong Zhang PetscFunctionBegin; 19249566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 19259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 19269566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 19273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1928baa3c1c6SHong Zhang } 1929baa3c1c6SHong Zhang 1930d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 1931d71ae5a4SJacob Faibussowitsch { 19326718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 1933cc48ffa7SToby Isaac 1934cc48ffa7SToby Isaac PetscFunctionBegin; 19359566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 19369566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 19379566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 19383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1939cc48ffa7SToby Isaac } 1940cc48ffa7SToby Isaac 1941d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1942d71ae5a4SJacob Faibussowitsch { 1943baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 19446718818eSStefano Zampini Mat_TransMatMultDense *atb; 1945cb20be35SHong Zhang MPI_Comm comm; 19466718818eSStefano Zampini PetscMPIInt size, *recvcounts; 19476718818eSStefano Zampini PetscScalar *carray, *sendbuf; 1948637a0070SStefano Zampini const PetscScalar *atbarray; 1949a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 1950e68c0b26SHong Zhang const PetscInt *ranges; 1951cb20be35SHong Zhang 1952cb20be35SHong Zhang PetscFunctionBegin; 19536718818eSStefano Zampini MatCheckProduct(C, 3); 19545f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 19556718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 19566718818eSStefano Zampini recvcounts = atb->recvcounts; 19576718818eSStefano Zampini sendbuf = atb->sendbuf; 19586718818eSStefano Zampini 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 19609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1961e68c0b26SHong Zhang 1962c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 19639566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 1964cb20be35SHong Zhang 19659566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 1966cb20be35SHong Zhang 1967660d5466SHong Zhang /* arrange atbarray into sendbuf */ 19689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 19699566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 1970637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 1971baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 1972a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 1973cb20be35SHong Zhang } 1974cb20be35SHong Zhang } 19759566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 1976637a0070SStefano Zampini 1977c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 19789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 19799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 19809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 19819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 19829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 19833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1984cb20be35SHong Zhang } 1985cb20be35SHong Zhang 1986d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1987d71ae5a4SJacob Faibussowitsch { 1988cb20be35SHong Zhang MPI_Comm comm; 1989baa3c1c6SHong Zhang PetscMPIInt size; 1990660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 1991baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 199247d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 19930acaeb71SStefano Zampini PetscInt i; 19940acaeb71SStefano Zampini const PetscInt *ranges; 1995cb20be35SHong Zhang 1996cb20be35SHong Zhang PetscFunctionBegin; 19978f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 19985f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 19999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2000cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 200198921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2002cb20be35SHong Zhang } 2003cb20be35SHong Zhang 20044222ddf1SHong Zhang /* create matrix product C */ 20059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 200647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 200847d993e7Ssuyashtn #endif 200947d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 201047d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 201147d993e7Ssuyashtn #endif 201248a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 20139566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2014baa3c1c6SHong Zhang 20154222ddf1SHong Zhang /* create data structure for reuse C */ 20169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20179566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 20184222ddf1SHong Zhang cM = C->rmap->N; 20199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 20209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 20210acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2022baa3c1c6SHong Zhang 20236718818eSStefano Zampini C->product->data = atb; 20246718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2026cb20be35SHong Zhang } 2027cb20be35SHong Zhang 2028d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2029d71ae5a4SJacob Faibussowitsch { 2030cc48ffa7SToby Isaac MPI_Comm comm; 2031cc48ffa7SToby Isaac PetscMPIInt i, size; 2032cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2033cc48ffa7SToby Isaac PetscMPIInt tag; 20344222ddf1SHong Zhang PetscInt alg; 2035cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 20364222ddf1SHong Zhang Mat_Product *product = C->product; 20374222ddf1SHong Zhang PetscBool flg; 2038cc48ffa7SToby Isaac 2039cc48ffa7SToby Isaac PetscFunctionBegin; 20406718818eSStefano Zampini MatCheckProduct(C, 4); 20415f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20424222ddf1SHong Zhang /* check local size of A and B */ 20435f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2044cc48ffa7SToby Isaac 20459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2046637a0070SStefano Zampini alg = flg ? 0 : 1; 2047cc48ffa7SToby Isaac 20484222ddf1SHong Zhang /* setup matrix product C */ 20499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 20509566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 20519566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 20534222ddf1SHong Zhang 20544222ddf1SHong Zhang /* create data structure for reuse C */ 20559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20579566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2058cc48ffa7SToby Isaac abt->tag = tag; 2059faa55883SToby Isaac abt->alg = alg; 2060faa55883SToby Isaac switch (alg) { 20614222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2062cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2063cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 20649566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2065faa55883SToby Isaac break; 20664222ddf1SHong Zhang default: /* alg: "allgatherv" */ 20679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 20689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2069faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2070faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2071faa55883SToby Isaac break; 2072faa55883SToby Isaac } 2073cc48ffa7SToby Isaac 20746718818eSStefano Zampini C->product->data = abt; 20756718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 20764222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2078cc48ffa7SToby Isaac } 2079cc48ffa7SToby Isaac 2080d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2081d71ae5a4SJacob Faibussowitsch { 2082cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20836718818eSStefano Zampini Mat_MatTransMultDense *abt; 2084cc48ffa7SToby Isaac MPI_Comm comm; 2085cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2086f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2087cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2088cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2089637a0070SStefano Zampini const PetscScalar *av, *bv; 209023fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2091cc48ffa7SToby Isaac MPI_Request reqs[2]; 2092cc48ffa7SToby Isaac const PetscInt *ranges; 2093cc48ffa7SToby Isaac 2094cc48ffa7SToby Isaac PetscFunctionBegin; 20956718818eSStefano Zampini MatCheckProduct(C, 3); 20965f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20976718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 20989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21049566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21069566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 21079566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 21089566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 21109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2111cc48ffa7SToby Isaac bn = B->rmap->n; 2112637a0070SStefano Zampini if (blda == bn) { 2113637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2114cc48ffa7SToby Isaac } else { 2115cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2116cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2117ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2118cc48ffa7SToby Isaac } 2119cc48ffa7SToby Isaac } 2120cc48ffa7SToby Isaac if (size > 1) { 2121cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2122cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2123cc48ffa7SToby Isaac } else { 2124cc48ffa7SToby Isaac sendto = recvfrom = 0; 2125cc48ffa7SToby Isaac } 21269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21279566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2128cc48ffa7SToby Isaac recvisfrom = rank; 2129cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2130cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2131cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2132cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2133cc48ffa7SToby Isaac 2134cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2135cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2136cc48ffa7SToby Isaac sendsiz = cK * bn; 2137cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2138cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 21399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 21409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2141cc48ffa7SToby Isaac } 2142cc48ffa7SToby Isaac 2143cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 21449566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2145792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2146cc48ffa7SToby Isaac 2147cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2148cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 21499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2150cc48ffa7SToby Isaac } 2151cc48ffa7SToby Isaac bn = nextbn; 2152cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2153cc48ffa7SToby Isaac sendbuf = recvbuf; 2154cc48ffa7SToby Isaac } 21559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 21569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 21589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 21599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 21603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2161cc48ffa7SToby Isaac } 2162cc48ffa7SToby Isaac 2163d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2164d71ae5a4SJacob Faibussowitsch { 2165faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21666718818eSStefano Zampini Mat_MatTransMultDense *abt; 2167faa55883SToby Isaac MPI_Comm comm; 2168637a0070SStefano Zampini PetscMPIInt size; 2169637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2170637a0070SStefano Zampini const PetscScalar *av, *bv; 2171637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2172faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2173637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2174faa55883SToby Isaac 2175faa55883SToby Isaac PetscFunctionBegin; 21766718818eSStefano Zampini MatCheckProduct(C, 3); 21775f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21786718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 21809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21859566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21869566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 21879566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21889566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2189faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2190faa55883SToby Isaac bn = B->rmap->n; 2191faa55883SToby Isaac sendbuf = abt->buf[0]; 2192faa55883SToby Isaac recvbuf = abt->buf[1]; 2193faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2194ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2195faa55883SToby Isaac } 21969566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 21989566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 22009566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2201792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22049566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 22059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2208faa55883SToby Isaac } 2209faa55883SToby Isaac 2210d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2211d71ae5a4SJacob Faibussowitsch { 22126718818eSStefano Zampini Mat_MatTransMultDense *abt; 2213faa55883SToby Isaac 2214faa55883SToby Isaac PetscFunctionBegin; 22156718818eSStefano Zampini MatCheckProduct(C, 3); 22165f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22176718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2218faa55883SToby Isaac switch (abt->alg) { 2219d71ae5a4SJacob Faibussowitsch case 1: 2220d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2221d71ae5a4SJacob Faibussowitsch break; 2222d71ae5a4SJacob Faibussowitsch default: 2223d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2224d71ae5a4SJacob Faibussowitsch break; 2225faa55883SToby Isaac } 22263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2227faa55883SToby Isaac } 2228faa55883SToby Isaac 2229d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2230d71ae5a4SJacob Faibussowitsch { 22316718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2232320f2790SHong Zhang 2233320f2790SHong Zhang PetscFunctionBegin; 22349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 22359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 22369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 22379566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 22383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2239320f2790SHong Zhang } 2240320f2790SHong Zhang 22415242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2242d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2243d71ae5a4SJacob Faibussowitsch { 22446718818eSStefano Zampini Mat_MatMultDense *ab; 2245320f2790SHong Zhang 2246320f2790SHong Zhang PetscFunctionBegin; 22476718818eSStefano Zampini MatCheckProduct(C, 3); 22485f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 22496718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 22509566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 22519566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 22529566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 22539566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 22543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2255320f2790SHong Zhang } 2256320f2790SHong Zhang 2257d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2258d71ae5a4SJacob Faibussowitsch { 2259320f2790SHong Zhang Mat Ae, Be, Ce; 2260320f2790SHong Zhang Mat_MatMultDense *ab; 2261320f2790SHong Zhang 2262320f2790SHong Zhang PetscFunctionBegin; 22636718818eSStefano Zampini MatCheckProduct(C, 4); 22645f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 22654222ddf1SHong Zhang /* check local size of A and B */ 2266320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 226798921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2268320f2790SHong Zhang } 2269320f2790SHong Zhang 22704222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 22719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 22729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 22739566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 22749566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 22759566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2276320f2790SHong Zhang 22779566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 22789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 22799566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 22809566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 22819566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2282320f2790SHong Zhang 22834222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 22849566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 22859566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 22864222ddf1SHong Zhang 22874222ddf1SHong Zhang /* setup C */ 22889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 22899566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 22909566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2291320f2790SHong Zhang 2292320f2790SHong Zhang /* create data structure for reuse Cdense */ 22939566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2294320f2790SHong Zhang ab->Ae = Ae; 2295320f2790SHong Zhang ab->Be = Be; 2296320f2790SHong Zhang ab->Ce = Ce; 22976718818eSStefano Zampini 22986718818eSStefano Zampini C->product->data = ab; 22996718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 23004222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 23013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2302320f2790SHong Zhang } 23034222ddf1SHong Zhang #endif 23042ef1f0ffSBarry Smith 23054222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2306d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2307d71ae5a4SJacob Faibussowitsch { 2308320f2790SHong Zhang PetscFunctionBegin; 23094222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23104222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 23113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2312320f2790SHong Zhang } 23135242a7b1SHong Zhang #endif 231486aefd0dSHong Zhang 2315d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2316d71ae5a4SJacob Faibussowitsch { 23174222ddf1SHong Zhang Mat_Product *product = C->product; 23184222ddf1SHong Zhang Mat A = product->A, B = product->B; 23194222ddf1SHong Zhang 23204222ddf1SHong Zhang PetscFunctionBegin; 23214222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 232298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 23236718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 23246718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 23253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23264222ddf1SHong Zhang } 23274222ddf1SHong Zhang 2328d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2329d71ae5a4SJacob Faibussowitsch { 23304222ddf1SHong Zhang Mat_Product *product = C->product; 23314222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 23324222ddf1SHong Zhang PetscInt alg, nalg = 2; 23334222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23344222ddf1SHong Zhang 23354222ddf1SHong Zhang PetscFunctionBegin; 23364222ddf1SHong Zhang /* Set default algorithm */ 23374222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 23389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 233948a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23404222ddf1SHong Zhang 23414222ddf1SHong Zhang /* Get runtime option */ 23424222ddf1SHong Zhang if (product->api_user) { 2343d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 23449566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2345d0609cedSBarry Smith PetscOptionsEnd(); 23464222ddf1SHong Zhang } else { 2347d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 23489566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2349d0609cedSBarry Smith PetscOptionsEnd(); 23504222ddf1SHong Zhang } 235148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23524222ddf1SHong Zhang 23534222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 23544222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23564222ddf1SHong Zhang } 23574222ddf1SHong Zhang 2358d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2359d71ae5a4SJacob Faibussowitsch { 23604222ddf1SHong Zhang Mat_Product *product = C->product; 23614222ddf1SHong Zhang 23624222ddf1SHong Zhang PetscFunctionBegin; 23634222ddf1SHong Zhang switch (product->type) { 23644222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2365d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2366d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2367d71ae5a4SJacob Faibussowitsch break; 23684222ddf1SHong Zhang #endif 2369d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2370d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2371d71ae5a4SJacob Faibussowitsch break; 2372d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2373d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2374d71ae5a4SJacob Faibussowitsch break; 2375d71ae5a4SJacob Faibussowitsch default: 2376d71ae5a4SJacob Faibussowitsch break; 23774222ddf1SHong Zhang } 23783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23794222ddf1SHong Zhang } 2380