1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 1111a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 12ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 13ab92ecdeSBarry Smith 14ab92ecdeSBarry Smith Input Parameter: 1511a5261eSBarry Smith . A - the sequential or MPI dense matrix 16ab92ecdeSBarry Smith 17ab92ecdeSBarry Smith Output Parameter: 18ab92ecdeSBarry Smith . B - the inner matrix 19ab92ecdeSBarry Smith 208e6c10adSSatish Balay Level: intermediate 218e6c10adSSatish Balay 2211a5261eSBarry Smith .seealso: `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 23ab92ecdeSBarry Smith @*/ 24*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 25*d71ae5a4SJacob Faibussowitsch { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 31d5ea218eSStefano Zampini PetscValidPointer(B, 2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43*d71ae5a4SJacob Faibussowitsch { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 52*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 53*d71ae5a4SJacob Faibussowitsch { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 552f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 622f605a99SJose E. Roman if (rend2 > rstart) { 632f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 71*d71ae5a4SJacob Faibussowitsch { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 73d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 83*d71ae5a4SJacob Faibussowitsch { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 85637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 94*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 95*d71ae5a4SJacob Faibussowitsch { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 125*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 126*d71ae5a4SJacob Faibussowitsch { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 128d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 158*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 159*d71ae5a4SJacob Faibussowitsch { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 161d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 179*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 180*d71ae5a4SJacob Faibussowitsch { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 189*d71ae5a4SJacob Faibussowitsch { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 1999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 2009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 2019566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A, iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20217359960SJose E. Roman } 2039566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 204ad16ce7aSStefano Zampini PetscFunctionReturn(0); 205ad16ce7aSStefano Zampini } 206ad16ce7aSStefano Zampini 207*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 208*d71ae5a4SJacob Faibussowitsch { 209ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 210ff14e315SSatish Balay 2113a40ed3dSBarry Smith PetscFunctionBegin; 21228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2139566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2143a40ed3dSBarry Smith PetscFunctionReturn(0); 215ff14e315SSatish Balay } 216ff14e315SSatish Balay 217*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 218*d71ae5a4SJacob Faibussowitsch { 2198572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2208572280aSBarry Smith 2218572280aSBarry Smith PetscFunctionBegin; 22228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2239566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2248572280aSBarry Smith PetscFunctionReturn(0); 2258572280aSBarry Smith } 2268572280aSBarry Smith 227*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 228*d71ae5a4SJacob Faibussowitsch { 2296947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2306947451fSStefano Zampini 2316947451fSStefano Zampini PetscFunctionBegin; 23228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2346947451fSStefano Zampini PetscFunctionReturn(0); 2356947451fSStefano Zampini } 2366947451fSStefano Zampini 237*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 238*d71ae5a4SJacob Faibussowitsch { 239d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 240d3042a70SBarry Smith 241d3042a70SBarry Smith PetscFunctionBegin; 24228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 24328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2449566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 245d3042a70SBarry Smith PetscFunctionReturn(0); 246d3042a70SBarry Smith } 247d3042a70SBarry Smith 248*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 249*d71ae5a4SJacob Faibussowitsch { 250d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 251d3042a70SBarry Smith 252d3042a70SBarry Smith PetscFunctionBegin; 25328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2559566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 256d3042a70SBarry Smith PetscFunctionReturn(0); 257d3042a70SBarry Smith } 258d3042a70SBarry Smith 259*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 260*d71ae5a4SJacob Faibussowitsch { 261d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 262d5ea218eSStefano Zampini 263d5ea218eSStefano Zampini PetscFunctionBegin; 26428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2669566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 267d5ea218eSStefano Zampini PetscFunctionReturn(0); 268d5ea218eSStefano Zampini } 269d5ea218eSStefano Zampini 270*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 271*d71ae5a4SJacob Faibussowitsch { 272ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 273637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2745d0c19d7SBarry Smith const PetscInt *irow, *icol; 275637a0070SStefano Zampini const PetscScalar *v; 276637a0070SStefano Zampini PetscScalar *bv; 277ca3fa75bSLois Curfman McInnes Mat newmat; 2784aa3045dSJed Brown IS iscol_local; 27942a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 280ca3fa75bSLois Curfman McInnes 281ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 28408401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 28542a884f0SBarry Smith 2869566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 2879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 292ca3fa75bSLois Curfman McInnes 293ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2947eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2957eba5e9cSLois Curfman McInnes original matrix! */ 296ca3fa75bSLois Curfman McInnes 2979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 2989566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 299ca3fa75bSLois Curfman McInnes 300ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 301ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 302e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3037eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 304ca3fa75bSLois Curfman McInnes newmat = *B; 305ca3fa75bSLois Curfman McInnes } else { 306ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3109566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 311ca3fa75bSLois Curfman McInnes } 312ca3fa75bSLois Curfman McInnes 313ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 314ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3184aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 319637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 320ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 321ca3fa75bSLois Curfman McInnes } 3229566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 324ca3fa75bSLois Curfman McInnes 325ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 328ca3fa75bSLois Curfman McInnes 329ca3fa75bSLois Curfman McInnes /* Free work space */ 3309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 333ca3fa75bSLois Curfman McInnes *B = newmat; 334ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 335ca3fa75bSLois Curfman McInnes } 336ca3fa75bSLois Curfman McInnes 337*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 338*d71ae5a4SJacob Faibussowitsch { 33973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 34073a71a0fSBarry Smith 3413a40ed3dSBarry Smith PetscFunctionBegin; 3429566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3433a40ed3dSBarry Smith PetscFunctionReturn(0); 344ff14e315SSatish Balay } 345ff14e315SSatish Balay 346*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 347*d71ae5a4SJacob Faibussowitsch { 3488572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3498572280aSBarry Smith 3508572280aSBarry Smith PetscFunctionBegin; 3519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3528572280aSBarry Smith PetscFunctionReturn(0); 3538572280aSBarry Smith } 3548572280aSBarry Smith 355*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 356*d71ae5a4SJacob Faibussowitsch { 3576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3586947451fSStefano Zampini 3596947451fSStefano Zampini PetscFunctionBegin; 3609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3616947451fSStefano Zampini PetscFunctionReturn(0); 3626947451fSStefano Zampini } 3636947451fSStefano Zampini 364*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 365*d71ae5a4SJacob Faibussowitsch { 36639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 36713f74950SBarry Smith PetscInt nstash, reallocs; 3688965ea79SLois Curfman McInnes 3693a40ed3dSBarry Smith PetscFunctionBegin; 3704067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3718965ea79SLois Curfman McInnes 3729566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3739566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3749566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3753a40ed3dSBarry Smith PetscFunctionReturn(0); 3768965ea79SLois Curfman McInnes } 3778965ea79SLois Curfman McInnes 378*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 379*d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 38213f74950SBarry Smith PetscMPIInt n; 38387828ca2SBarry Smith PetscScalar *val; 3848965ea79SLois Curfman McInnes 3853a40ed3dSBarry Smith PetscFunctionBegin; 386910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3878965ea79SLois Curfman McInnes /* wait on receives */ 3887ef1d9bdSSatish Balay while (1) { 3899566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 3907ef1d9bdSSatish Balay if (!flg) break; 3918965ea79SLois Curfman McInnes 3927ef1d9bdSSatish Balay for (i = 0; i < n;) { 3937ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3942205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 3952205254eSKarl Rupp if (row[j] != rstart) break; 3962205254eSKarl Rupp } 3977ef1d9bdSSatish Balay if (j < n) ncols = j - i; 3987ef1d9bdSSatish Balay else ncols = n - i; 3997ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4009566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4017ef1d9bdSSatish Balay i = j; 4028965ea79SLois Curfman McInnes } 4037ef1d9bdSSatish Balay } 4049566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 405910cf402Sprj- } 4068965ea79SLois Curfman McInnes 4079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4093a40ed3dSBarry Smith PetscFunctionReturn(0); 4108965ea79SLois Curfman McInnes } 4118965ea79SLois Curfman McInnes 412*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIDense(Mat A) 413*d71ae5a4SJacob Faibussowitsch { 41439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4153a40ed3dSBarry Smith 4163a40ed3dSBarry Smith PetscFunctionBegin; 4179566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4183a40ed3dSBarry Smith PetscFunctionReturn(0); 4198965ea79SLois Curfman McInnes } 4208965ea79SLois Curfman McInnes 421*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 422*d71ae5a4SJacob Faibussowitsch { 42339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 424637a0070SStefano Zampini PetscInt i, len, *lrows; 425637a0070SStefano Zampini 426637a0070SStefano Zampini PetscFunctionBegin; 427637a0070SStefano Zampini /* get locally owned rows */ 4289566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 429637a0070SStefano Zampini /* fix right hand side if needed */ 430637a0070SStefano Zampini if (x && b) { 43197b48c8fSBarry Smith const PetscScalar *xx; 43297b48c8fSBarry Smith PetscScalar *bb; 4338965ea79SLois Curfman McInnes 4349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 436637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 43997b48c8fSBarry Smith } 4409566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 441e2eb51b1SBarry Smith if (diag != 0.0) { 442637a0070SStefano Zampini Vec d; 443b9679d65SBarry Smith 4449566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4459566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4469566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 448b9679d65SBarry Smith } 4499566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4503a40ed3dSBarry Smith PetscFunctionReturn(0); 4518965ea79SLois Curfman McInnes } 4528965ea79SLois Curfman McInnes 453cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 454cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 455cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 457cc2e6a90SBarry Smith 458*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 459*d71ae5a4SJacob Faibussowitsch { 46039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 461637a0070SStefano Zampini const PetscScalar *ax; 462637a0070SStefano Zampini PetscScalar *ay; 463d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 464c456f294SBarry Smith 4653a40ed3dSBarry Smith PetscFunctionBegin; 4666f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4679566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4689566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4739566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4743a40ed3dSBarry Smith PetscFunctionReturn(0); 4758965ea79SLois Curfman McInnes } 4768965ea79SLois Curfman McInnes 477*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 478*d71ae5a4SJacob Faibussowitsch { 47939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 480637a0070SStefano Zampini const PetscScalar *ax; 481637a0070SStefano Zampini PetscScalar *ay; 482d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 483c456f294SBarry Smith 4843a40ed3dSBarry Smith PetscFunctionBegin; 4856f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4869566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4879566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4889566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4899566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4909566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4929566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 4933a40ed3dSBarry Smith PetscFunctionReturn(0); 4948965ea79SLois Curfman McInnes } 4958965ea79SLois Curfman McInnes 496*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 497*d71ae5a4SJacob Faibussowitsch { 498096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 499637a0070SStefano Zampini const PetscScalar *ax; 500637a0070SStefano Zampini PetscScalar *ay; 501d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 502096963f5SLois Curfman McInnes 5033a40ed3dSBarry Smith PetscFunctionBegin; 5046f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5059566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5069566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5079566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5089566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5133a40ed3dSBarry Smith PetscFunctionReturn(0); 514096963f5SLois Curfman McInnes } 515096963f5SLois Curfman McInnes 516*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 517*d71ae5a4SJacob Faibussowitsch { 518096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 519637a0070SStefano Zampini const PetscScalar *ax; 520637a0070SStefano Zampini PetscScalar *ay; 521d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 522096963f5SLois Curfman McInnes 5233a40ed3dSBarry Smith PetscFunctionBegin; 5246f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5259566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5269566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5279566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5289566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5299566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5309566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5333a40ed3dSBarry Smith PetscFunctionReturn(0); 534096963f5SLois Curfman McInnes } 535096963f5SLois Curfman McInnes 536*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 537*d71ae5a4SJacob Faibussowitsch { 53839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 539637a0070SStefano Zampini PetscInt lda, len, i, n, m = A->rmap->n, radd; 54087828ca2SBarry Smith PetscScalar *x, zero = 0.0; 541637a0070SStefano Zampini const PetscScalar *av; 542ed3cc1f0SBarry Smith 5433a40ed3dSBarry Smith PetscFunctionBegin; 5449566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 5459566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 5469566063dSJacob Faibussowitsch PetscCall(VecGetSize(v, &n)); 54708401ef6SPierre Jolivet PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 548d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 549d0f46423SBarry Smith radd = A->rmap->rstart * m; 5509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5519566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 552ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 5549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5553a40ed3dSBarry Smith PetscFunctionReturn(0); 5568965ea79SLois Curfman McInnes } 5578965ea79SLois Curfman McInnes 558*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIDense(Mat mat) 559*d71ae5a4SJacob Faibussowitsch { 5603501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 561ed3cc1f0SBarry Smith 5623a40ed3dSBarry Smith PetscFunctionBegin; 563aa482453SBarry Smith #if defined(PETSC_USE_LOG) 564c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N); 5658965ea79SLois Curfman McInnes #endif 5669566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 56728b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 56828b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5719566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57401b82886SBarry Smith 5759566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5778baccfbdSHong Zhang 5789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 5918baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 5938baccfbdSHong Zhang #endif 594d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 596d24d4204SJose E. Roman #endif 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6006718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6032e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6042e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6052e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6062e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6072e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6186718818eSStefano Zampini #endif 6199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 629f8103e6bSStefano Zampini 630f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6313a40ed3dSBarry Smith PetscFunctionReturn(0); 6328965ea79SLois Curfman McInnes } 63339ddd567SLois Curfman McInnes 63452c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 63552c5f739Sprj- 6369804daf3SBarry Smith #include <petscdraw.h> 637*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 638*d71ae5a4SJacob Faibussowitsch { 63939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 640616b8fbbSStefano Zampini PetscMPIInt rank; 64119fd82e9SBarry Smith PetscViewerType vtype; 642ace3abfcSBarry Smith PetscBool iascii, isdraw; 643b0a32e0cSBarry Smith PetscViewer sviewer; 644f3ef73ceSBarry Smith PetscViewerFormat format; 6458965ea79SLois Curfman McInnes 6463a40ed3dSBarry Smith PetscFunctionBegin; 6479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 65032077d6dSBarry Smith if (iascii) { 6519566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6529566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 653456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6544e220ebcSLois Curfman McInnes MatInfo info; 6559566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6579371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6589371c9d4SSatish Balay (PetscInt)info.memory)); 6599566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6616f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6623a40ed3dSBarry Smith PetscFunctionReturn(0); 663fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6643a40ed3dSBarry Smith PetscFunctionReturn(0); 6658965ea79SLois Curfman McInnes } 666f1af5d2fSBarry Smith } else if (isdraw) { 667b0a32e0cSBarry Smith PetscDraw draw; 668ace3abfcSBarry Smith PetscBool isnull; 669f1af5d2fSBarry Smith 6709566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 6719566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 672f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 673f1af5d2fSBarry Smith } 67477ed5343SBarry Smith 6757da1fb6eSBarry Smith { 6768965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6778965ea79SLois Curfman McInnes Mat A; 678d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 679ba8c8a56SBarry Smith PetscInt *cols; 680ba8c8a56SBarry Smith PetscScalar *vals; 6818965ea79SLois Curfman McInnes 6829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 683dd400576SPatrick Sanan if (rank == 0) { 6849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 6853a40ed3dSBarry Smith } else { 6869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 6878965ea79SLois Curfman McInnes } 6887adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6899566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 6909566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 6918965ea79SLois Curfman McInnes 69239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69339ddd567SLois Curfman McInnes but it's quick for now */ 69451022da4SBarry Smith A->insertmode = INSERT_VALUES; 6952205254eSKarl Rupp 6962205254eSKarl Rupp row = mat->rmap->rstart; 6972205254eSKarl Rupp m = mdn->A->rmap->n; 6988965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 6999566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7009566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7019566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 70239ddd567SLois Curfman McInnes row++; 7038965ea79SLois Curfman McInnes } 7048965ea79SLois Curfman McInnes 7059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 708dd400576SPatrick Sanan if (rank == 0) { 7099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7109566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7118965ea79SLois Curfman McInnes } 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7139566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7158965ea79SLois Curfman McInnes } 7163a40ed3dSBarry Smith PetscFunctionReturn(0); 7178965ea79SLois Curfman McInnes } 7188965ea79SLois Curfman McInnes 719*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 720*d71ae5a4SJacob Faibussowitsch { 721ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7228965ea79SLois Curfman McInnes 723433994e6SBarry Smith PetscFunctionBegin; 7249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7280f5bd95cSBarry Smith 72932077d6dSBarry Smith if (iascii || issocket || isdraw) { 7309566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7311baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7323a40ed3dSBarry Smith PetscFunctionReturn(0); 7338965ea79SLois Curfman McInnes } 7348965ea79SLois Curfman McInnes 735*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 736*d71ae5a4SJacob Faibussowitsch { 7373501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7383501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7393966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7408965ea79SLois Curfman McInnes 7413a40ed3dSBarry Smith PetscFunctionBegin; 7424e220ebcSLois Curfman McInnes info->block_size = 1.0; 7432205254eSKarl Rupp 7449566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7452205254eSKarl Rupp 7469371c9d4SSatish Balay isend[0] = info->nz_used; 7479371c9d4SSatish Balay isend[1] = info->nz_allocated; 7489371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7499371c9d4SSatish Balay isend[3] = info->memory; 7509371c9d4SSatish Balay isend[4] = info->mallocs; 7518965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7524e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7534e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7544e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7554e220ebcSLois Curfman McInnes info->memory = isend[3]; 7564e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7578965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7592205254eSKarl Rupp 7604e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7614e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7624e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7634e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7644e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7658965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 7672205254eSKarl Rupp 7684e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7694e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7704e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7714e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7724e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7738965ea79SLois Curfman McInnes } 7744e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7754e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7764e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7773a40ed3dSBarry Smith PetscFunctionReturn(0); 7788965ea79SLois Curfman McInnes } 7798965ea79SLois Curfman McInnes 780*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 781*d71ae5a4SJacob Faibussowitsch { 78239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 7838965ea79SLois Curfman McInnes 7843a40ed3dSBarry Smith PetscFunctionBegin; 78512c028f9SKris Buschelman switch (op) { 786512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 78812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 78943674050SBarry Smith MatCheckPreallocated(A, 1); 7909566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 79112c028f9SKris Buschelman break; 79212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79343674050SBarry Smith MatCheckPreallocated(A, 1); 7944e0d8c25SBarry Smith a->roworiented = flg; 7959566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 79612c028f9SKris Buschelman break; 7978c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 79813fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 79912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 800*d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 801*d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 802*d71ae5a4SJacob Faibussowitsch break; 803*d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 804*d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 805*d71ae5a4SJacob Faibussowitsch break; 80677e54ba9SKris Buschelman case MAT_SYMMETRIC: 80777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8089a4540c5SBarry Smith case MAT_HERMITIAN: 8099a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 810b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 811b94d7dedSBarry Smith case MAT_SPD: 812600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8135d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 814b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 815b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8169566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 81777e54ba9SKris Buschelman break; 818*d71ae5a4SJacob Faibussowitsch default: 819*d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8203a40ed3dSBarry Smith } 8213a40ed3dSBarry Smith PetscFunctionReturn(0); 8228965ea79SLois Curfman McInnes } 8238965ea79SLois Curfman McInnes 824*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 825*d71ae5a4SJacob Faibussowitsch { 8265b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 827637a0070SStefano Zampini const PetscScalar *l; 828637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 829637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8305b2fa520SLois Curfman McInnes 8315b2fa520SLois Curfman McInnes PetscFunctionBegin; 8329566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8339566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8349566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8355b2fa520SLois Curfman McInnes if (ll) { 8369566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 83708401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8389566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8395b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8405b2fa520SLois Curfman McInnes x = l[i]; 841637a0070SStefano Zampini v = vv + i; 8429371c9d4SSatish Balay for (j = 0; j < n; j++) { 8439371c9d4SSatish Balay (*v) *= x; 8449371c9d4SSatish Balay v += lda; 8459371c9d4SSatish Balay } 8465b2fa520SLois Curfman McInnes } 8479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8489566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8495b2fa520SLois Curfman McInnes } 8505b2fa520SLois Curfman McInnes if (rr) { 851637a0070SStefano Zampini const PetscScalar *ar; 852637a0070SStefano Zampini 8539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 85408401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8566f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8579566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8615b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8625b2fa520SLois Curfman McInnes x = r[i]; 863637a0070SStefano Zampini v = vv + i * lda; 8642205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 8655b2fa520SLois Curfman McInnes } 8669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 8679566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8685b2fa520SLois Curfman McInnes } 8699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 8705b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8715b2fa520SLois Curfman McInnes } 8725b2fa520SLois Curfman McInnes 873*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 874*d71ae5a4SJacob Faibussowitsch { 8753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 87613f74950SBarry Smith PetscInt i, j; 877616b8fbbSStefano Zampini PetscMPIInt size; 878329f5518SBarry Smith PetscReal sum = 0.0; 879637a0070SStefano Zampini const PetscScalar *av, *v; 8803501a2bdSLois Curfman McInnes 8813a40ed3dSBarry Smith PetscFunctionBegin; 8829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 883637a0070SStefano Zampini v = av; 8849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 885616b8fbbSStefano Zampini if (size == 1) { 8869566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 8873501a2bdSLois Curfman McInnes } else { 8883501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 889d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 8909371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 8919371c9d4SSatish Balay v++; 8923501a2bdSLois Curfman McInnes } 8931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 8948f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8959566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 8963a40ed3dSBarry Smith } else if (type == NORM_1) { 897329f5518SBarry Smith PetscReal *tmp, *tmp2; 8989566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 899064f8208SBarry Smith *nrm = 0.0; 900637a0070SStefano Zampini v = av; 901d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 902d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9039371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9049371c9d4SSatish Balay v++; 9053501a2bdSLois Curfman McInnes } 9063501a2bdSLois Curfman McInnes } 9071c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 908d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 909064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9103501a2bdSLois Curfman McInnes } 9119566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9129566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9133a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 914329f5518SBarry Smith PetscReal ntemp; 9159566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 917ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9183501a2bdSLois Curfman McInnes } 9199566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9203a40ed3dSBarry Smith PetscFunctionReturn(0); 9213501a2bdSLois Curfman McInnes } 9223501a2bdSLois Curfman McInnes 923*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 924*d71ae5a4SJacob Faibussowitsch { 9253501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9263501a2bdSLois Curfman McInnes Mat B; 927d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 928637a0070SStefano Zampini PetscInt j, i, lda; 92987828ca2SBarry Smith PetscScalar *v; 9303501a2bdSLois Curfman McInnes 9313a40ed3dSBarry Smith PetscFunctionBegin; 9327fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 933cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9369566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9379566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 938637a0070SStefano Zampini } else B = *matout; 9393501a2bdSLois Curfman McInnes 9409371c9d4SSatish Balay m = a->A->rmap->n; 9419371c9d4SSatish Balay n = a->A->cmap->n; 9429566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9439566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9453501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9461acff37aSSatish Balay for (j = 0; j < n; j++) { 9479566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 948637a0070SStefano Zampini v += lda; 9493501a2bdSLois Curfman McInnes } 9509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9519566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 954cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9553501a2bdSLois Curfman McInnes *matout = B; 9563501a2bdSLois Curfman McInnes } else { 9579566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9583501a2bdSLois Curfman McInnes } 9593a40ed3dSBarry Smith PetscFunctionReturn(0); 960096963f5SLois Curfman McInnes } 961096963f5SLois Curfman McInnes 9626849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 96352c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 9648965ea79SLois Curfman McInnes 965*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_MPIDense(Mat A) 966*d71ae5a4SJacob Faibussowitsch { 967273d9f13SBarry Smith PetscFunctionBegin; 9689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 97048a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 971273d9f13SBarry Smith PetscFunctionReturn(0); 972273d9f13SBarry Smith } 973273d9f13SBarry Smith 974*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 975*d71ae5a4SJacob Faibussowitsch { 976488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 977488007eeSBarry Smith 978488007eeSBarry Smith PetscFunctionBegin; 9799566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 980488007eeSBarry Smith PetscFunctionReturn(0); 981488007eeSBarry Smith } 982488007eeSBarry Smith 983*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIDense(Mat mat) 984*d71ae5a4SJacob Faibussowitsch { 985ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 986ba337c44SJed Brown 987ba337c44SJed Brown PetscFunctionBegin; 9889566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 989ba337c44SJed Brown PetscFunctionReturn(0); 990ba337c44SJed Brown } 991ba337c44SJed Brown 992*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIDense(Mat A) 993*d71ae5a4SJacob Faibussowitsch { 994ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 995ba337c44SJed Brown 996ba337c44SJed Brown PetscFunctionBegin; 9979566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 998ba337c44SJed Brown PetscFunctionReturn(0); 999ba337c44SJed Brown } 1000ba337c44SJed Brown 1001*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1002*d71ae5a4SJacob Faibussowitsch { 1003ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1004ba337c44SJed Brown 1005ba337c44SJed Brown PetscFunctionBegin; 10069566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 1007ba337c44SJed Brown PetscFunctionReturn(0); 1008ba337c44SJed Brown } 1009ba337c44SJed Brown 1010*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1011*d71ae5a4SJacob Faibussowitsch { 1012637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 101349a6ff4bSBarry Smith 101449a6ff4bSBarry Smith PetscFunctionBegin; 101528b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 101628b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10179566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 101849a6ff4bSBarry Smith PetscFunctionReturn(0); 101949a6ff4bSBarry Smith } 102049a6ff4bSBarry Smith 1021857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 102252c5f739Sprj- 1023*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1024*d71ae5a4SJacob Faibussowitsch { 1025a873a8cdSSam Reynolds PetscInt i, m, n; 10260716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10270716a85fSBarry Smith PetscReal *work; 10280716a85fSBarry Smith 10290716a85fSBarry Smith PetscFunctionBegin; 10309566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1032857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10339566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1034857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10359566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1036a873a8cdSSam Reynolds } else { 10379566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1038a873a8cdSSam Reynolds } 1039857cbf51SRichard Tran Mills if (type == NORM_2) { 10400716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10410716a85fSBarry Smith } 1042857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10440716a85fSBarry Smith } else { 10451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10460716a85fSBarry Smith } 10479566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1048857cbf51SRichard Tran Mills if (type == NORM_2) { 1049a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1050857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1051a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10520716a85fSBarry Smith } 10530716a85fSBarry Smith PetscFunctionReturn(0); 10540716a85fSBarry Smith } 10550716a85fSBarry Smith 1056637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1057*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDenseCUDA(Mat A, PetscScalar alpha) 1058*d71ae5a4SJacob Faibussowitsch { 1059126e4e93SJose E. Roman PetscScalar *da; 1060126e4e93SJose E. Roman PetscInt lda; 1061126e4e93SJose E. Roman 1062126e4e93SJose E. Roman PetscFunctionBegin; 1063126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A, &da)); 1064126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A, &lda)); 1065126e4e93SJose E. Roman PetscCall(PetscInfo(A, "Performing Shift on backend\n")); 1066126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da, alpha, lda, A->rmap->rstart, A->rmap->rend, A->cmap->N)); 1067126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A, &da)); 1068126e4e93SJose E. Roman PetscFunctionReturn(0); 1069126e4e93SJose E. Roman } 1070126e4e93SJose E. Roman 1071*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1072*d71ae5a4SJacob Faibussowitsch { 10736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10746947451fSStefano Zampini PetscInt lda; 10756947451fSStefano Zampini 10766947451fSStefano Zampini PetscFunctionBegin; 107728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 107828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 10794dfa11a4SJacob Faibussowitsch if (!a->cvec) { PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); } 10806947451fSStefano Zampini a->vecinuse = col + 1; 10819566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 10829566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 10839566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 10846947451fSStefano Zampini *v = a->cvec; 10856947451fSStefano Zampini PetscFunctionReturn(0); 10866947451fSStefano Zampini } 10876947451fSStefano Zampini 1088*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1089*d71ae5a4SJacob Faibussowitsch { 10906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10916947451fSStefano Zampini 10926947451fSStefano Zampini PetscFunctionBegin; 109328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 109428b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 10956947451fSStefano Zampini a->vecinuse = 0; 10969566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 10979566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 1098742765d3SMatthew Knepley if (v) *v = NULL; 10996947451fSStefano Zampini PetscFunctionReturn(0); 11006947451fSStefano Zampini } 11016947451fSStefano Zampini 1102*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1103*d71ae5a4SJacob Faibussowitsch { 11046947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11056947451fSStefano Zampini PetscInt lda; 11066947451fSStefano Zampini 11076947451fSStefano Zampini PetscFunctionBegin; 110828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 110928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 11104dfa11a4SJacob Faibussowitsch if (!a->cvec) { PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); } 11116947451fSStefano Zampini a->vecinuse = col + 1; 11129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 11139566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A, &a->ptrinuse)); 11149566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 11159566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11166947451fSStefano Zampini *v = a->cvec; 11176947451fSStefano Zampini PetscFunctionReturn(0); 11186947451fSStefano Zampini } 11196947451fSStefano Zampini 1120*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1121*d71ae5a4SJacob Faibussowitsch { 11226947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11236947451fSStefano Zampini 11246947451fSStefano Zampini PetscFunctionBegin; 112528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 112628b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 11276947451fSStefano Zampini a->vecinuse = 0; 11289566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A, &a->ptrinuse)); 11299566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11309566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 1131742765d3SMatthew Knepley if (v) *v = NULL; 11326947451fSStefano Zampini PetscFunctionReturn(0); 11336947451fSStefano Zampini } 11346947451fSStefano Zampini 1135*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1136*d71ae5a4SJacob Faibussowitsch { 11376947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11386947451fSStefano Zampini PetscInt lda; 11396947451fSStefano Zampini 11406947451fSStefano Zampini PetscFunctionBegin; 114128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 114228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 11434dfa11a4SJacob Faibussowitsch if (!a->cvec) { PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); } 11446947451fSStefano Zampini a->vecinuse = col + 1; 11459566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 11469566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 11479566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 11486947451fSStefano Zampini *v = a->cvec; 11496947451fSStefano Zampini PetscFunctionReturn(0); 11506947451fSStefano Zampini } 11516947451fSStefano Zampini 1152*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A, PetscInt col, Vec *v) 1153*d71ae5a4SJacob Faibussowitsch { 11546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11556947451fSStefano Zampini 11566947451fSStefano Zampini PetscFunctionBegin; 115728b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 115828b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 11596947451fSStefano Zampini a->vecinuse = 0; 11609566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 11619566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 1162742765d3SMatthew Knepley if (v) *v = NULL; 11636947451fSStefano Zampini PetscFunctionReturn(0); 11646947451fSStefano Zampini } 11656947451fSStefano Zampini 1166*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1167*d71ae5a4SJacob Faibussowitsch { 1168637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1169637a0070SStefano Zampini 1170637a0070SStefano Zampini PetscFunctionBegin; 117128b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 117228b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 11739566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A, a)); 1174637a0070SStefano Zampini PetscFunctionReturn(0); 1175637a0070SStefano Zampini } 1176637a0070SStefano Zampini 1177*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1178*d71ae5a4SJacob Faibussowitsch { 1179637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1180637a0070SStefano Zampini 1181637a0070SStefano Zampini PetscFunctionBegin; 118228b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 118328b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 11849566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1185637a0070SStefano Zampini PetscFunctionReturn(0); 1186637a0070SStefano Zampini } 1187637a0070SStefano Zampini 1188*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1189*d71ae5a4SJacob Faibussowitsch { 1190d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1191d5ea218eSStefano Zampini 1192d5ea218eSStefano Zampini PetscFunctionBegin; 119328b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 119428b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 11959566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A, a)); 1196d5ea218eSStefano Zampini PetscFunctionReturn(0); 1197d5ea218eSStefano Zampini } 1198d5ea218eSStefano Zampini 1199*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1200*d71ae5a4SJacob Faibussowitsch { 1201637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1202637a0070SStefano Zampini 1203637a0070SStefano Zampini PetscFunctionBegin; 12049566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A, a)); 1205637a0070SStefano Zampini PetscFunctionReturn(0); 1206637a0070SStefano Zampini } 1207637a0070SStefano Zampini 1208*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1209*d71ae5a4SJacob Faibussowitsch { 1210637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1211637a0070SStefano Zampini 1212637a0070SStefano Zampini PetscFunctionBegin; 12139566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A, a)); 1214637a0070SStefano Zampini PetscFunctionReturn(0); 1215637a0070SStefano Zampini } 1216637a0070SStefano Zampini 1217*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1218*d71ae5a4SJacob Faibussowitsch { 1219637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1220637a0070SStefano Zampini 1221637a0070SStefano Zampini PetscFunctionBegin; 12229566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A, a)); 1223637a0070SStefano Zampini PetscFunctionReturn(0); 1224637a0070SStefano Zampini } 1225637a0070SStefano Zampini 1226*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1227*d71ae5a4SJacob Faibussowitsch { 1228637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1229637a0070SStefano Zampini 1230637a0070SStefano Zampini PetscFunctionBegin; 12319566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A, a)); 1232637a0070SStefano Zampini PetscFunctionReturn(0); 1233637a0070SStefano Zampini } 1234637a0070SStefano Zampini 1235*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1236*d71ae5a4SJacob Faibussowitsch { 1237637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1238637a0070SStefano Zampini 1239637a0070SStefano Zampini PetscFunctionBegin; 12409566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A, a)); 1241637a0070SStefano Zampini PetscFunctionReturn(0); 1242637a0070SStefano Zampini } 1243637a0070SStefano Zampini 1244*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1245*d71ae5a4SJacob Faibussowitsch { 1246637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense *)A->data; 1247637a0070SStefano Zampini 1248637a0070SStefano Zampini PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A, a)); 1250637a0070SStefano Zampini PetscFunctionReturn(0); 1251637a0070SStefano Zampini } 1252637a0070SStefano Zampini 12536947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat, PetscInt, Vec *); 12546947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat, PetscInt, Vec *); 12556947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat, PetscInt, Vec *); 12566947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat, PetscInt, Vec *); 12576947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat, PetscInt, Vec *); 12586947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat, PetscInt, Vec *); 12595ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat, Mat *); 12606947451fSStefano Zampini 1261*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat, PetscBool bind) 1262*d71ae5a4SJacob Faibussowitsch { 1263637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense *)mat->data; 1264637a0070SStefano Zampini 1265637a0070SStefano Zampini PetscFunctionBegin; 126628b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 126728b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12681baa6e33SBarry Smith if (d->A) PetscCall(MatBindToCPU(d->A, bind)); 1269637a0070SStefano Zampini mat->boundtocpu = bind; 12706947451fSStefano Zampini if (!bind) { 12716947451fSStefano Zampini PetscBool iscuda; 12726947451fSStefano Zampini 12733faff063SStefano Zampini PetscCall(PetscFree(mat->defaultrandtype)); 12743faff063SStefano Zampini PetscCall(PetscStrallocpy(PETSCCURAND, &mat->defaultrandtype)); 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec, VECMPICUDA, &iscuda)); 127648a46eb9SPierre Jolivet if (!iscuda) PetscCall(VecDestroy(&d->cvec)); 12779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat, MATMPIDENSECUDA, &iscuda)); 127848a46eb9SPierre Jolivet if (!iscuda) PetscCall(MatDestroy(&d->cmat)); 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDenseCUDA)); 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDenseCUDA)); 12819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDenseCUDA)); 12829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1285126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12866947451fSStefano Zampini } else { 12873faff063SStefano Zampini PetscCall(PetscFree(mat->defaultrandtype)); 12883faff063SStefano Zampini PetscCall(PetscStrallocpy(PETSCRANDER48, &mat->defaultrandtype)); 12899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 12909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 12939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 12949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 1295126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1296616b8fbbSStefano Zampini } 12971baa6e33SBarry Smith if (d->cmat) PetscCall(MatBindToCPU(d->cmat, bind)); 1298637a0070SStefano Zampini PetscFunctionReturn(0); 1299637a0070SStefano Zampini } 1300637a0070SStefano Zampini 1301*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1302*d71ae5a4SJacob Faibussowitsch { 1303637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense *)A->data; 1304637a0070SStefano Zampini PetscBool iscuda; 1305637a0070SStefano Zampini 1306637a0070SStefano Zampini PetscFunctionBegin; 1307d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 13089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 1309637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1312637a0070SStefano Zampini if (!d->A) { 13139566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &d->A)); 13149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 1315637a0070SStefano Zampini } 13169566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A, MATSEQDENSECUDA)); 13179566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A, d_data)); 1318637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13196f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1320637a0070SStefano Zampini PetscFunctionReturn(0); 1321637a0070SStefano Zampini } 1322637a0070SStefano Zampini #endif 1323637a0070SStefano Zampini 1324*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1325*d71ae5a4SJacob Faibussowitsch { 132673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 132773a71a0fSBarry Smith 132873a71a0fSBarry Smith PetscFunctionBegin; 13299566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 13303faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 13313faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 13323faff063SStefano Zampini #endif 133373a71a0fSBarry Smith PetscFunctionReturn(0); 133473a71a0fSBarry Smith } 133573a71a0fSBarry Smith 1336*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1337*d71ae5a4SJacob Faibussowitsch { 13383b49f96aSBarry Smith PetscFunctionBegin; 13393b49f96aSBarry Smith *missing = PETSC_FALSE; 13403b49f96aSBarry Smith PetscFunctionReturn(0); 13413b49f96aSBarry Smith } 13423b49f96aSBarry Smith 13434222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1344cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 13456718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1346a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 13476718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 13486718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1349cc48ffa7SToby Isaac 13508965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135109dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 135209dc0095SBarry Smith MatGetRow_MPIDense, 135309dc0095SBarry Smith MatRestoreRow_MPIDense, 135409dc0095SBarry Smith MatMult_MPIDense, 135597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13567c922b88SBarry Smith MatMultTranspose_MPIDense, 13577c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 1361f4259b30SLisandro Dalcin /* 10*/ NULL, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 136509dc0095SBarry Smith MatTranspose_MPIDense, 136697304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13676e4ee0c6SHong Zhang MatEqual_MPIDense, 136809dc0095SBarry Smith MatGetDiagonal_MPIDense, 13695b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137009dc0095SBarry Smith MatNorm_MPIDense, 137197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137209dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137309dc0095SBarry Smith MatSetOption_MPIDense, 137409dc0095SBarry Smith MatZeroEntries_MPIDense, 1375d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 13804994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1384f4259b30SLisandro Dalcin NULL, 1385d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 1389f4259b30SLisandro Dalcin NULL, 1390d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13917dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 139309dc0095SBarry Smith MatGetValues_MPIDense, 1394a76f77c3SStefano Zampini MatCopy_MPIDense, 1395f4259b30SLisandro Dalcin /* 44*/ NULL, 139609dc0095SBarry Smith MatScale_MPIDense, 13972f605a99SJose E. Roman MatShift_MPIDense, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 140073a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin /* 54*/ NULL, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 14107dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1411b9b97703SBarry Smith MatDestroy_MPIDense, 1412b9b97703SBarry Smith MatView_MPIDense, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin /* 64*/ NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin /* 69*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /* 74*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /* 79*/ NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 14345bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /* 89*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /* 94*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 14476718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1448cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1449f4259b30SLisandro Dalcin NULL, 14504222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453ba337c44SJed Brown MatConjugate_MPIDense, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin /*104*/ NULL, 1456ba337c44SJed Brown MatRealPart_MPIDense, 1457ba337c44SJed Brown MatImaginaryPart_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin /*109*/ NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin NULL, 146349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14643b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1465f4259b30SLisandro Dalcin /*114*/ NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin /*119*/ NULL, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin /*124*/ NULL, 1476a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin /*129*/ NULL, 1481f4259b30SLisandro Dalcin NULL, 14826718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1483cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin /*134*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin /*139*/ NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 14954222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1496f4259b30SLisandro Dalcin /*145*/ NULL, 1497f4259b30SLisandro Dalcin NULL, 149899a7f59eSMark Adams NULL, 149999a7f59eSMark Adams NULL, 15007fb60732SBarry Smith NULL, 15019371c9d4SSatish Balay /*150*/ NULL}; 15028965ea79SLois Curfman McInnes 1503*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1504*d71ae5a4SJacob Faibussowitsch { 1505637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1506637a0070SStefano Zampini PetscBool iscuda; 1507a23d5eceSKris Buschelman 1508a23d5eceSKris Buschelman PetscFunctionBegin; 150928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 15109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1512637a0070SStefano Zampini if (!a->A) { 15139566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 15149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1515637a0070SStefano Zampini } 15169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A, iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15189566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 15193faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15203faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 15213faff063SStefano Zampini #endif 1522637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15236f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1524a23d5eceSKris Buschelman PetscFunctionReturn(0); 1525a23d5eceSKris Buschelman } 1526a23d5eceSKris Buschelman 1527*d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1528*d71ae5a4SJacob Faibussowitsch { 15294e29119aSPierre Jolivet Mat B, C; 15304e29119aSPierre Jolivet 15314e29119aSPierre Jolivet PetscFunctionBegin; 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 15339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 15349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15354e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15364e29119aSPierre Jolivet C = *newmat; 15374e29119aSPierre Jolivet } else C = NULL; 15389566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 15399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15404e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15419566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 15424e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15434e29119aSPierre Jolivet PetscFunctionReturn(0); 15444e29119aSPierre Jolivet } 15454e29119aSPierre Jolivet 1546*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1547*d71ae5a4SJacob Faibussowitsch { 15484e29119aSPierre Jolivet Mat B, C; 15494e29119aSPierre Jolivet 15504e29119aSPierre Jolivet PetscFunctionBegin; 15519566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 15529566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 15534e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15544e29119aSPierre Jolivet C = *newmat; 15554e29119aSPierre Jolivet } else C = NULL; 15569566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 15579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15584e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15599566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 15604e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15614e29119aSPierre Jolivet PetscFunctionReturn(0); 15624e29119aSPierre Jolivet } 15634e29119aSPierre Jolivet 156465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1565*d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1566*d71ae5a4SJacob Faibussowitsch { 15678ea901baSHong Zhang Mat mat_elemental; 156832d7a744SHong Zhang PetscScalar *v; 156932d7a744SHong Zhang PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols; 15708ea901baSHong Zhang 15718baccfbdSHong Zhang PetscFunctionBegin; 1572378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1573378336b6SHong Zhang mat_elemental = *newmat; 15749566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1575378336b6SHong Zhang } else { 15769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 15789566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 15799566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15809566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1581378336b6SHong Zhang } 1582378336b6SHong Zhang 15839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 158432d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 158532d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 15868ea901baSHong Zhang 1587637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 15899566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 15939566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 15948ea901baSHong Zhang 1595511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15969566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 15978ea901baSHong Zhang } else { 15988ea901baSHong Zhang *newmat = mat_elemental; 15998ea901baSHong Zhang } 16008baccfbdSHong Zhang PetscFunctionReturn(0); 16018baccfbdSHong Zhang } 160265b80a83SHong Zhang #endif 16038baccfbdSHong Zhang 1604*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1605*d71ae5a4SJacob Faibussowitsch { 160686aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 160786aefd0dSHong Zhang 160886aefd0dSHong Zhang PetscFunctionBegin; 16099566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 161086aefd0dSHong Zhang PetscFunctionReturn(0); 161186aefd0dSHong Zhang } 161286aefd0dSHong Zhang 1613*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1614*d71ae5a4SJacob Faibussowitsch { 161586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 161686aefd0dSHong Zhang 161786aefd0dSHong Zhang PetscFunctionBegin; 16189566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 161986aefd0dSHong Zhang PetscFunctionReturn(0); 162086aefd0dSHong Zhang } 162186aefd0dSHong Zhang 1622*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1623*d71ae5a4SJacob Faibussowitsch { 162494e2cb23SJakub Kruzik Mat_MPIDense *mat; 162594e2cb23SJakub Kruzik PetscInt m, nloc, N; 162694e2cb23SJakub Kruzik 162794e2cb23SJakub Kruzik PetscFunctionBegin; 16289566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 16299566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 163094e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 163194e2cb23SJakub Kruzik PetscInt sum; 163294e2cb23SJakub Kruzik 163348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 163494e2cb23SJakub Kruzik /* Check sum(n) = N */ 16351c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 163608401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 163794e2cb23SJakub Kruzik 16389566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 16399566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 164094e2cb23SJakub Kruzik } 164194e2cb23SJakub Kruzik 164294e2cb23SJakub Kruzik /* numeric phase */ 164394e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 16449566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 164594e2cb23SJakub Kruzik PetscFunctionReturn(0); 164694e2cb23SJakub Kruzik } 164794e2cb23SJakub Kruzik 1648637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1649*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M, MatType type, MatReuse reuse, Mat *newmat) 1650*d71ae5a4SJacob Faibussowitsch { 1651637a0070SStefano Zampini Mat B; 1652637a0070SStefano Zampini Mat_MPIDense *m; 1653637a0070SStefano Zampini 1654637a0070SStefano Zampini PetscFunctionBegin; 1655637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16569566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M, MAT_COPY_VALUES, newmat)); 1657637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16589566063dSJacob Faibussowitsch PetscCall(MatCopy(M, *newmat, SAME_NONZERO_PATTERN)); 1659637a0070SStefano Zampini } 1660637a0070SStefano Zampini 1661637a0070SStefano Zampini B = *newmat; 16629566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B, PETSC_TRUE)); 16639566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16649566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD, &B->defaultvectype)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIDENSE)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpidensecuda_mpidense_C", NULL)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArray_C", NULL)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArrayRead_C", NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArrayWrite_C", NULL)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArray_C", NULL)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArrayRead_C", NULL)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArrayWrite_C", NULL)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAPlaceArray_C", NULL)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAResetArray_C", NULL)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAReplaceArray_C", NULL)); 1680637a0070SStefano Zampini m = (Mat_MPIDense *)(B)->data; 168148a46eb9SPierre Jolivet if (m->A) PetscCall(MatConvert(m->A, MATSEQDENSE, MAT_INPLACE_MATRIX, &m->A)); 1682637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1683637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1684637a0070SStefano Zampini PetscFunctionReturn(0); 1685637a0070SStefano Zampini } 1686637a0070SStefano Zampini 1687*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M, MatType type, MatReuse reuse, Mat *newmat) 1688*d71ae5a4SJacob Faibussowitsch { 1689637a0070SStefano Zampini Mat B; 1690637a0070SStefano Zampini Mat_MPIDense *m; 1691637a0070SStefano Zampini 1692637a0070SStefano Zampini PetscFunctionBegin; 1693637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16949566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M, MAT_COPY_VALUES, newmat)); 1695637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16969566063dSJacob Faibussowitsch PetscCall(MatCopy(M, *newmat, SAME_NONZERO_PATTERN)); 1697637a0070SStefano Zampini } 1698637a0070SStefano Zampini 1699637a0070SStefano Zampini B = *newmat; 17009566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA, &B->defaultvectype)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIDENSECUDA)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1717f5ff9c66SStefano Zampini m = (Mat_MPIDense *)(B->data); 1718637a0070SStefano Zampini if (m->A) { 17199566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A, MATSEQDENSECUDA, MAT_INPLACE_MATRIX, &m->A)); 1720637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1721637a0070SStefano Zampini } else { 1722637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1723637a0070SStefano Zampini } 17249566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B, PETSC_FALSE)); 1725637a0070SStefano Zampini 1726637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1727637a0070SStefano Zampini PetscFunctionReturn(0); 1728637a0070SStefano Zampini } 1729637a0070SStefano Zampini #endif 1730637a0070SStefano Zampini 1731*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1732*d71ae5a4SJacob Faibussowitsch { 17336947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 17346947451fSStefano Zampini PetscInt lda; 17356947451fSStefano Zampini 17366947451fSStefano Zampini PetscFunctionBegin; 173728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 173828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 173948a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 17406947451fSStefano Zampini a->vecinuse = col + 1; 17419566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 17429566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 17439566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 17446947451fSStefano Zampini *v = a->cvec; 17456947451fSStefano Zampini PetscFunctionReturn(0); 17466947451fSStefano Zampini } 17476947451fSStefano Zampini 1748*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1749*d71ae5a4SJacob Faibussowitsch { 17506947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 17516947451fSStefano Zampini 17526947451fSStefano Zampini PetscFunctionBegin; 175328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 175428b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 17556947451fSStefano Zampini a->vecinuse = 0; 17569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 17579566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1758742765d3SMatthew Knepley if (v) *v = NULL; 17596947451fSStefano Zampini PetscFunctionReturn(0); 17606947451fSStefano Zampini } 17616947451fSStefano Zampini 1762*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1763*d71ae5a4SJacob Faibussowitsch { 17646947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 17656947451fSStefano Zampini PetscInt lda; 17666947451fSStefano Zampini 17676947451fSStefano Zampini PetscFunctionBegin; 176828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 176928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 177048a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 17716947451fSStefano Zampini a->vecinuse = col + 1; 17729566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 17739566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 17749566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 17759566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17766947451fSStefano Zampini *v = a->cvec; 17776947451fSStefano Zampini PetscFunctionReturn(0); 17786947451fSStefano Zampini } 17796947451fSStefano Zampini 1780*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1781*d71ae5a4SJacob Faibussowitsch { 17826947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 17836947451fSStefano Zampini 17846947451fSStefano Zampini PetscFunctionBegin; 17855f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 17865f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 17876947451fSStefano Zampini a->vecinuse = 0; 17889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 17899566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17909566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1791742765d3SMatthew Knepley if (v) *v = NULL; 17926947451fSStefano Zampini PetscFunctionReturn(0); 17936947451fSStefano Zampini } 17946947451fSStefano Zampini 1795*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1796*d71ae5a4SJacob Faibussowitsch { 17976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 17986947451fSStefano Zampini PetscInt lda; 17996947451fSStefano Zampini 18006947451fSStefano Zampini PetscFunctionBegin; 18015f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 18025f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 180348a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 18046947451fSStefano Zampini a->vecinuse = col + 1; 18059566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 18069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 18079566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 18086947451fSStefano Zampini *v = a->cvec; 18096947451fSStefano Zampini PetscFunctionReturn(0); 18106947451fSStefano Zampini } 18116947451fSStefano Zampini 1812*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1813*d71ae5a4SJacob Faibussowitsch { 18146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18156947451fSStefano Zampini 18166947451fSStefano Zampini PetscFunctionBegin; 18175f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 18185f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 18196947451fSStefano Zampini a->vecinuse = 0; 18209566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 18219566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1822742765d3SMatthew Knepley if (v) *v = NULL; 18236947451fSStefano Zampini PetscFunctionReturn(0); 18246947451fSStefano Zampini } 18256947451fSStefano Zampini 1826*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1827*d71ae5a4SJacob Faibussowitsch { 18285ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1829616b8fbbSStefano Zampini Mat_MPIDense *c; 1830616b8fbbSStefano Zampini MPI_Comm comm; 1831a2748737SPierre Jolivet PetscInt pbegin, pend; 18325ea7661aSPierre Jolivet 18335ea7661aSPierre Jolivet PetscFunctionBegin; 18349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 18355f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 18365f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1837a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1838a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 18395ea7661aSPierre Jolivet if (!a->cmat) { 18409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 18419566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1842a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1843a2748737SPierre Jolivet else { 1844a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1845a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1846a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1847a2748737SPierre Jolivet } 18489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 18499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1850a2748737SPierre Jolivet } else { 1851a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1852a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1853a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1854a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1855a2748737SPierre Jolivet } 1856a2748737SPierre Jolivet if (!same) { 1857a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1858a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1859a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1860a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1861a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1862a2748737SPierre Jolivet } 1863a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 18649566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18659566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 18669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 18679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18685ea7661aSPierre Jolivet } 1869a2748737SPierre Jolivet } 1870616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 18715f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1872a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 18733faff063SStefano Zampini 1874616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1875616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18763faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 18773faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 18783faff063SStefano Zampini #endif 18795ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18805ea7661aSPierre Jolivet *v = a->cmat; 18815ea7661aSPierre Jolivet PetscFunctionReturn(0); 18825ea7661aSPierre Jolivet } 18835ea7661aSPierre Jolivet 1884*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1885*d71ae5a4SJacob Faibussowitsch { 18865ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1887616b8fbbSStefano Zampini Mat_MPIDense *c; 18885ea7661aSPierre Jolivet 18895ea7661aSPierre Jolivet PetscFunctionBegin; 18905f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 18915f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 18925f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 18935ea7661aSPierre Jolivet a->matinuse = 0; 1894616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 18959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1896742765d3SMatthew Knepley if (v) *v = NULL; 18973faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 18983faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 18993faff063SStefano Zampini #endif 19005ea7661aSPierre Jolivet PetscFunctionReturn(0); 19015ea7661aSPierre Jolivet } 19025ea7661aSPierre Jolivet 1903002bc6daSRichard Tran Mills /*MC 1904002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1905002bc6daSRichard Tran Mills 1906002bc6daSRichard Tran Mills Options Database Keys: 190711a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1908002bc6daSRichard Tran Mills 1909002bc6daSRichard Tran Mills Level: beginner 1910002bc6daSRichard Tran Mills 191111a5261eSBarry Smith .seealso: `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1912002bc6daSRichard Tran Mills M*/ 1913*d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1914*d71ae5a4SJacob Faibussowitsch { 1915273d9f13SBarry Smith Mat_MPIDense *a; 1916273d9f13SBarry Smith 1917273d9f13SBarry Smith PetscFunctionBegin; 19184dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1919b0a32e0cSBarry Smith mat->data = (void *)a; 19209566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops, &MatOps_Values, sizeof(struct _MatOps))); 1921273d9f13SBarry Smith 1922273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1923273d9f13SBarry Smith 1924273d9f13SBarry Smith /* build cache for off array entries formed */ 1925273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19262205254eSKarl Rupp 19279566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1928273d9f13SBarry Smith 1929273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1930f4259b30SLisandro Dalcin a->lvec = NULL; 1931f4259b30SLisandro Dalcin a->Mvctx = NULL; 1932273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1933273d9f13SBarry Smith 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 19409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 19529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 19558baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 19578baccfbdSHong Zhang #endif 1958d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1960d24d4204SJose E. Roman #endif 1961637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1963637a0070SStefano Zampini #endif 19649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 19676718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 19699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 19706718818eSStefano Zampini #endif 19718949adfdSHong Zhang 19729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 19739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 19749566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 1975273d9f13SBarry Smith PetscFunctionReturn(0); 1976273d9f13SBarry Smith } 1977273d9f13SBarry Smith 1978209238afSKris Buschelman /*MC 1979637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1980637a0070SStefano Zampini 1981637a0070SStefano Zampini Options Database Keys: 198211a5261eSBarry Smith . -mat_type mpidensecuda - sets the matrix type to `MATMPIDENSECUDA` during a call to `MatSetFromOptions()` 1983637a0070SStefano Zampini 1984637a0070SStefano Zampini Level: beginner 1985637a0070SStefano Zampini 198611a5261eSBarry Smith .seealso: `MATMPIDENSE`, `MATSEQDENSE`, `MATSEQDENSECUDA` 1987637a0070SStefano Zampini M*/ 1988637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1989a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1990*d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1991*d71ae5a4SJacob Faibussowitsch { 1992637a0070SStefano Zampini PetscFunctionBegin; 19939566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19949566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19959566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B, MATMPIDENSECUDA, MAT_INPLACE_MATRIX, &B)); 1996637a0070SStefano Zampini PetscFunctionReturn(0); 1997637a0070SStefano Zampini } 1998637a0070SStefano Zampini #endif 1999637a0070SStefano Zampini 2000637a0070SStefano Zampini /*MC 2001002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2002209238afSKris Buschelman 200311a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 200411a5261eSBarry Smith and `MATMPIDENSE` otherwise. 2005209238afSKris Buschelman 2006209238afSKris Buschelman Options Database Keys: 200711a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 2008209238afSKris Buschelman 2009209238afSKris Buschelman Level: beginner 2010209238afSKris Buschelman 2011c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20126947451fSStefano Zampini M*/ 20136947451fSStefano Zampini 20146947451fSStefano Zampini /*MC 20156947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20166947451fSStefano Zampini 201711a5261eSBarry Smith This matrix type is identical to `MATSEQDENSECUDA` when constructed with a single process communicator, 201811a5261eSBarry Smith and `MATMPIDENSECUDA` otherwise. 20196947451fSStefano Zampini 20206947451fSStefano Zampini Options Database Keys: 202111a5261eSBarry Smith . -mat_type densecuda - sets the matrix type to `MATDENSECUDA` during a call to `MatSetFromOptions()` 20226947451fSStefano Zampini 20236947451fSStefano Zampini Level: beginner 20246947451fSStefano Zampini 2025c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2026209238afSKris Buschelman M*/ 2027209238afSKris Buschelman 2028273d9f13SBarry Smith /*@C 2029273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2030273d9f13SBarry Smith 20318f490ea3SStefano Zampini Collective 2032273d9f13SBarry Smith 2033273d9f13SBarry Smith Input Parameters: 20341c4f3114SJed Brown . B - the matrix 20350298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2036273d9f13SBarry Smith to control all matrix memory allocation. 2037273d9f13SBarry Smith 2038273d9f13SBarry Smith Notes: 2039273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2040273d9f13SBarry Smith storage by columns. 2041273d9f13SBarry Smith 2042273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2043273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20440298fd71SBarry Smith set data=NULL. 2045273d9f13SBarry Smith 2046273d9f13SBarry Smith Level: intermediate 2047273d9f13SBarry Smith 204811a5261eSBarry Smith .seealso: `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2049273d9f13SBarry Smith @*/ 2050*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 2051*d71ae5a4SJacob Faibussowitsch { 2052273d9f13SBarry Smith PetscFunctionBegin; 2053d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 2054cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 2055273d9f13SBarry Smith PetscFunctionReturn(0); 2056273d9f13SBarry Smith } 2057273d9f13SBarry Smith 2058d3042a70SBarry Smith /*@ 205911a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 2060d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2061d3042a70SBarry Smith into a matrix 2062d3042a70SBarry Smith 2063d3042a70SBarry Smith Not Collective 2064d3042a70SBarry Smith 2065d3042a70SBarry Smith Input Parameters: 2066d3042a70SBarry Smith + mat - the matrix 2067d3042a70SBarry Smith - array - the array in column major order 2068d3042a70SBarry Smith 206911a5261eSBarry Smith Note: 207011a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 2071d3042a70SBarry Smith freed when the matrix is destroyed. 2072d3042a70SBarry Smith 2073d3042a70SBarry Smith Level: developer 2074d3042a70SBarry Smith 207511a5261eSBarry Smith .seealso: `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 207611a5261eSBarry Smith `MatDenseReplaceArray()` 2077d3042a70SBarry Smith @*/ 2078*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 2079*d71ae5a4SJacob Faibussowitsch { 2080d3042a70SBarry Smith PetscFunctionBegin; 2081d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2082cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 20839566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 20843faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 2085637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2086637a0070SStefano Zampini #endif 2087d3042a70SBarry Smith PetscFunctionReturn(0); 2088d3042a70SBarry Smith } 2089d3042a70SBarry Smith 2090d3042a70SBarry Smith /*@ 209111a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 2092d3042a70SBarry Smith 2093d3042a70SBarry Smith Not Collective 2094d3042a70SBarry Smith 2095d3042a70SBarry Smith Input Parameters: 2096d3042a70SBarry Smith . mat - the matrix 2097d3042a70SBarry Smith 209811a5261eSBarry Smith Note: 209911a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 2100d3042a70SBarry Smith 2101d3042a70SBarry Smith Level: developer 2102d3042a70SBarry Smith 210311a5261eSBarry Smith .seealso: `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2104d3042a70SBarry Smith @*/ 2105*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 2106*d71ae5a4SJacob Faibussowitsch { 2107d3042a70SBarry Smith PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2109cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2111d3042a70SBarry Smith PetscFunctionReturn(0); 2112d3042a70SBarry Smith } 2113d3042a70SBarry Smith 2114d5ea218eSStefano Zampini /*@ 2115d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2116d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2117d5ea218eSStefano Zampini into a matrix 2118d5ea218eSStefano Zampini 2119d5ea218eSStefano Zampini Not Collective 2120d5ea218eSStefano Zampini 2121d5ea218eSStefano Zampini Input Parameters: 2122d5ea218eSStefano Zampini + mat - the matrix 2123d5ea218eSStefano Zampini - array - the array in column major order 2124d5ea218eSStefano Zampini 212511a5261eSBarry Smith Note: 212611a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 2127d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2128d5ea218eSStefano Zampini 2129d5ea218eSStefano Zampini Level: developer 2130d5ea218eSStefano Zampini 213111a5261eSBarry Smith .seealso: `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 2132d5ea218eSStefano Zampini @*/ 2133*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 2134*d71ae5a4SJacob Faibussowitsch { 2135d5ea218eSStefano Zampini PetscFunctionBegin; 2136d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2137cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 21389566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 21393faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 2140d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2141d5ea218eSStefano Zampini #endif 2142d5ea218eSStefano Zampini PetscFunctionReturn(0); 2143d5ea218eSStefano Zampini } 2144d5ea218eSStefano Zampini 2145637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21468965ea79SLois Curfman McInnes /*@C 214711a5261eSBarry Smith MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a `MATDENSECUDA` matrix with an 2148637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2149637a0070SStefano Zampini into a matrix 2150637a0070SStefano Zampini 2151637a0070SStefano Zampini Not Collective 2152637a0070SStefano Zampini 2153637a0070SStefano Zampini Input Parameters: 2154637a0070SStefano Zampini + mat - the matrix 2155637a0070SStefano Zampini - array - the array in column major order 2156637a0070SStefano Zampini 215711a5261eSBarry Smith Note: 215811a5261eSBarry Smith You can return to the original array with a call to `MatDenseCUDAResetArray()`. The user is responsible for freeing this array; it will not be 2159637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2160637a0070SStefano Zampini 2161637a0070SStefano Zampini Level: developer 2162637a0070SStefano Zampini 216311a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()`, `MatDenseCUDAReplaceArray()` 2164637a0070SStefano Zampini @*/ 2165*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAPlaceArray(Mat mat, const PetscScalar *array) 2166*d71ae5a4SJacob Faibussowitsch { 2167637a0070SStefano Zampini PetscFunctionBegin; 2168d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2169cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseCUDAPlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 21709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2171637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2172637a0070SStefano Zampini PetscFunctionReturn(0); 2173637a0070SStefano Zampini } 2174637a0070SStefano Zampini 2175637a0070SStefano Zampini /*@C 217611a5261eSBarry Smith MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to `MatDenseCUDAPlaceArray()` 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini Not Collective 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini Input Parameters: 2181637a0070SStefano Zampini . mat - the matrix 2182637a0070SStefano Zampini 218311a5261eSBarry Smith Note: 218411a5261eSBarry Smith You can only call this after a call to `MatDenseCUDAPlaceArray()` 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini Level: developer 2187637a0070SStefano Zampini 218811a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2189637a0070SStefano Zampini @*/ 2190*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2191*d71ae5a4SJacob Faibussowitsch { 2192637a0070SStefano Zampini PetscFunctionBegin; 2193d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2194cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseCUDAResetArray_C", (Mat), (mat)); 21959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2196637a0070SStefano Zampini PetscFunctionReturn(0); 2197637a0070SStefano Zampini } 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini /*@C 220011a5261eSBarry Smith MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a `MATDENSECUDA` matrix with an 2201d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2202d5ea218eSStefano Zampini into a matrix 2203d5ea218eSStefano Zampini 2204d5ea218eSStefano Zampini Not Collective 2205d5ea218eSStefano Zampini 2206d5ea218eSStefano Zampini Input Parameters: 2207d5ea218eSStefano Zampini + mat - the matrix 2208d5ea218eSStefano Zampini - array - the array in column major order 2209d5ea218eSStefano Zampini 221011a5261eSBarry Smith Note: 2211d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2212d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2213d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2214d5ea218eSStefano Zampini 2215d5ea218eSStefano Zampini Level: developer 2216d5ea218eSStefano Zampini 2217db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2218d5ea218eSStefano Zampini @*/ 2219*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAReplaceArray(Mat mat, const PetscScalar *array) 2220*d71ae5a4SJacob Faibussowitsch { 2221d5ea218eSStefano Zampini PetscFunctionBegin; 2222d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2223cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseCUDAReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 22249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2225d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2226d5ea218eSStefano Zampini PetscFunctionReturn(0); 2227d5ea218eSStefano Zampini } 2228d5ea218eSStefano Zampini 2229d5ea218eSStefano Zampini /*@C 223011a5261eSBarry Smith MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a `MATDENSECUDA` matrix. 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Not Collective 2233637a0070SStefano Zampini 2234637a0070SStefano Zampini Input Parameters: 2235637a0070SStefano Zampini . A - the matrix 2236637a0070SStefano Zampini 2237637a0070SStefano Zampini Output Parameters 2238637a0070SStefano Zampini . array - the GPU array in column major order 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini Notes: 224111a5261eSBarry Smith The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use `MatDenseCUDAGetArray()`. 224211a5261eSBarry Smith 224311a5261eSBarry Smith The array must be restored with `MatDenseCUDARestoreArrayWrite()` when no longer needed. 2244637a0070SStefano Zampini 2245637a0070SStefano Zampini Level: developer 2246637a0070SStefano Zampini 224711a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2248637a0070SStefano Zampini @*/ 2249*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2250*d71ae5a4SJacob Faibussowitsch { 2251637a0070SStefano Zampini PetscFunctionBegin; 2252d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2253cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDAGetArrayWrite_C", (Mat, PetscScalar **), (A, a)); 22549566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2255637a0070SStefano Zampini PetscFunctionReturn(0); 2256637a0070SStefano Zampini } 2257637a0070SStefano Zampini 2258637a0070SStefano Zampini /*@C 225911a5261eSBarry Smith MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a `MATDENSECUDA` matrix previously obtained with `MatDenseCUDAGetArrayWrite()`. 2260637a0070SStefano Zampini 2261637a0070SStefano Zampini Not Collective 2262637a0070SStefano Zampini 2263637a0070SStefano Zampini Input Parameters: 2264637a0070SStefano Zampini + A - the matrix 2265637a0070SStefano Zampini - array - the GPU array in column major order 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini Level: developer 2268637a0070SStefano Zampini 226911a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2270637a0070SStefano Zampini @*/ 2271*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2272*d71ae5a4SJacob Faibussowitsch { 2273637a0070SStefano Zampini PetscFunctionBegin; 2274d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2275cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDARestoreArrayWrite_C", (Mat, PetscScalar **), (A, a)); 22769566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2277637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2278637a0070SStefano Zampini PetscFunctionReturn(0); 2279637a0070SStefano Zampini } 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini /*@C 228211a5261eSBarry Smith MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a `MATDENSECUDA` matrix. The array must be restored with `MatDenseCUDARestoreArrayRead()` when no longer needed. 2283637a0070SStefano Zampini 2284637a0070SStefano Zampini Not Collective 2285637a0070SStefano Zampini 2286637a0070SStefano Zampini Input Parameters: 2287637a0070SStefano Zampini . A - the matrix 2288637a0070SStefano Zampini 2289637a0070SStefano Zampini Output Parameters 2290637a0070SStefano Zampini . array - the GPU array in column major order 2291637a0070SStefano Zampini 229211a5261eSBarry Smith Note: 229311a5261eSBarry Smith Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use `MatDenseCUDAGetArrayWrite()`. 2294637a0070SStefano Zampini 2295637a0070SStefano Zampini Level: developer 2296637a0070SStefano Zampini 229711a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2298637a0070SStefano Zampini @*/ 2299*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2300*d71ae5a4SJacob Faibussowitsch { 2301637a0070SStefano Zampini PetscFunctionBegin; 2302d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2303cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDAGetArrayRead_C", (Mat, const PetscScalar **), (A, a)); 2304637a0070SStefano Zampini PetscFunctionReturn(0); 2305637a0070SStefano Zampini } 2306637a0070SStefano Zampini 2307637a0070SStefano Zampini /*@C 230811a5261eSBarry Smith MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a `MATDENSECUDA` matrix previously obtained with a call to `MatDenseCUDAGetArrayRead()`. 2309637a0070SStefano Zampini 2310637a0070SStefano Zampini Not Collective 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini Input Parameters: 2313637a0070SStefano Zampini + A - the matrix 2314637a0070SStefano Zampini - array - the GPU array in column major order 2315637a0070SStefano Zampini 231611a5261eSBarry Smith Note: 231711a5261eSBarry Smith Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use `MatDenseCUDAGetArrayWrite()`. 2318637a0070SStefano Zampini 2319637a0070SStefano Zampini Level: developer 2320637a0070SStefano Zampini 232111a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2322637a0070SStefano Zampini @*/ 2323*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2324*d71ae5a4SJacob Faibussowitsch { 2325637a0070SStefano Zampini PetscFunctionBegin; 2326cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDARestoreArrayRead_C", (Mat, const PetscScalar **), (A, a)); 2327637a0070SStefano Zampini PetscFunctionReturn(0); 2328637a0070SStefano Zampini } 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini /*@C 233111a5261eSBarry Smith MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a `MATDENSECUDA` matrix. The array must be restored with `MatDenseCUDARestoreArray()` when no longer needed. 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Not Collective 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Input Parameters: 2336637a0070SStefano Zampini . A - the matrix 2337637a0070SStefano Zampini 2338637a0070SStefano Zampini Output Parameters 2339637a0070SStefano Zampini . array - the GPU array in column major order 2340637a0070SStefano Zampini 234111a5261eSBarry Smith Note: 234211a5261eSBarry Smith Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use `MatDenseCUDAGetArrayWrite()`. For read-only access, use `MatDenseCUDAGetArrayRead()`. 2343637a0070SStefano Zampini 2344637a0070SStefano Zampini Level: developer 2345637a0070SStefano Zampini 234611a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2347637a0070SStefano Zampini @*/ 2348*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2349*d71ae5a4SJacob Faibussowitsch { 2350637a0070SStefano Zampini PetscFunctionBegin; 2351d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2352cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDAGetArray_C", (Mat, PetscScalar **), (A, a)); 23539566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2354637a0070SStefano Zampini PetscFunctionReturn(0); 2355637a0070SStefano Zampini } 2356637a0070SStefano Zampini 2357637a0070SStefano Zampini /*@C 235811a5261eSBarry Smith MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a `MATDENSECUDA` matrix previously obtained with `MatDenseCUDAGetArray()`. 2359637a0070SStefano Zampini 2360637a0070SStefano Zampini Not Collective 2361637a0070SStefano Zampini 2362637a0070SStefano Zampini Input Parameters: 2363637a0070SStefano Zampini + A - the matrix 2364637a0070SStefano Zampini - array - the GPU array in column major order 2365637a0070SStefano Zampini 2366637a0070SStefano Zampini Level: developer 2367637a0070SStefano Zampini 236811a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2369637a0070SStefano Zampini @*/ 2370*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2371*d71ae5a4SJacob Faibussowitsch { 2372637a0070SStefano Zampini PetscFunctionBegin; 2373d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2374cac4c232SBarry Smith PetscUseMethod(A, "MatDenseCUDARestoreArray_C", (Mat, PetscScalar **), (A, a)); 23759566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2376637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2377637a0070SStefano Zampini PetscFunctionReturn(0); 2378637a0070SStefano Zampini } 2379637a0070SStefano Zampini #endif 2380637a0070SStefano Zampini 2381637a0070SStefano Zampini /*@C 238211a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 23838965ea79SLois Curfman McInnes 2384d083f849SBarry Smith Collective 2385db81eaa0SLois Curfman McInnes 23868965ea79SLois Curfman McInnes Input Parameters: 2387db81eaa0SLois Curfman McInnes + comm - MPI communicator 238811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 238911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 239011a5261eSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if m is given) 239111a5261eSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if n is given) 239211a5261eSBarry Smith - data - optional location of matrix data. Set data to NULL (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 2393dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23948965ea79SLois Curfman McInnes 23958965ea79SLois Curfman McInnes Output Parameter: 2396477f1c0bSLois Curfman McInnes . A - the matrix 23978965ea79SLois Curfman McInnes 2398b259b22eSLois Curfman McInnes Notes: 239939ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 240039ddd567SLois Curfman McInnes storage by columns. 240111a5261eSBarry Smith 240211a5261eSBarry Smith Although local portions of the matrix are stored in column-major 2403002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24048965ea79SLois Curfman McInnes 240518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 240618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 240711a5261eSBarry Smith set data=NULL (`PETSC_NULL_SCALAR` for Fortran users). 240818f449edSLois Curfman McInnes 24098965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24108965ea79SLois Curfman McInnes (possibly both). 24118965ea79SLois Curfman McInnes 2412027ccd11SLois Curfman McInnes Level: intermediate 2413027ccd11SLois Curfman McInnes 241411a5261eSBarry Smith .seealso: `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24158965ea79SLois Curfman McInnes @*/ 2416*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 2417*d71ae5a4SJacob Faibussowitsch { 24183a40ed3dSBarry Smith PetscFunctionBegin; 24199566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24216f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 24229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 24236f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 24243a40ed3dSBarry Smith PetscFunctionReturn(0); 24258965ea79SLois Curfman McInnes } 24268965ea79SLois Curfman McInnes 2427637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2428637a0070SStefano Zampini /*@C 242911a5261eSBarry Smith MatCreateDenseCUDA - Creates a matrix in `MATDENSECUDA` format using CUDA. 2430637a0070SStefano Zampini 2431637a0070SStefano Zampini Collective 2432637a0070SStefano Zampini 2433637a0070SStefano Zampini Input Parameters: 2434637a0070SStefano Zampini + comm - MPI communicator 243511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 243611a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 243711a5261eSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if m is given) 243811a5261eSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if n is given) 2439637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2440637a0070SStefano Zampini to control matrix memory allocation. 2441637a0070SStefano Zampini 2442637a0070SStefano Zampini Output Parameter: 2443637a0070SStefano Zampini . A - the matrix 2444637a0070SStefano Zampini 2445637a0070SStefano Zampini Level: intermediate 2446637a0070SStefano Zampini 244711a5261eSBarry Smith .seealso: `MATDENSECUDA`, `MatCreate()`, `MatCreateDense()` 2448637a0070SStefano Zampini @*/ 2449*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 2450*d71ae5a4SJacob Faibussowitsch { 2451637a0070SStefano Zampini PetscFunctionBegin; 24529566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 2453637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A, !!data, 6); 24549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24556f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSECUDA)); 24569566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A, data)); 24576f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A, data)); 2458637a0070SStefano Zampini PetscFunctionReturn(0); 2459637a0070SStefano Zampini } 2460637a0070SStefano Zampini #endif 2461637a0070SStefano Zampini 2462*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 2463*d71ae5a4SJacob Faibussowitsch { 24648965ea79SLois Curfman McInnes Mat mat; 24653501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 24668965ea79SLois Curfman McInnes 24673a40ed3dSBarry Smith PetscFunctionBegin; 2468f4259b30SLisandro Dalcin *newmat = NULL; 24699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 24709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 24719566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 2472834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 24735aa7edbeSHong Zhang 2474d5f3da31SBarry Smith mat->factortype = A->factortype; 2475c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2476273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24778965ea79SLois Curfman McInnes 2478e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24793782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2480e04c1aa4SHong Zhang 24819566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 24829566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 24838965ea79SLois Curfman McInnes 24849566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 248501b82886SBarry Smith 24868965ea79SLois Curfman McInnes *newmat = mat; 24873a40ed3dSBarry Smith PetscFunctionReturn(0); 24888965ea79SLois Curfman McInnes } 24898965ea79SLois Curfman McInnes 2490*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2491*d71ae5a4SJacob Faibussowitsch { 249287d5ce66SSatish Balay PetscBool isbinary; 249387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 249487d5ce66SSatish Balay PetscBool ishdf5; 249587d5ce66SSatish Balay #endif 2496eb91f321SVaclav Hapla 2497eb91f321SVaclav Hapla PetscFunctionBegin; 2498eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 2499eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2500eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25019566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 250387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 250587d5ce66SSatish Balay #endif 2506eb91f321SVaclav Hapla if (isbinary) { 25079566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 2508eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 250987d5ce66SSatish Balay } else if (ishdf5) { 25109566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 2511eb91f321SVaclav Hapla #endif 251298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 2513eb91f321SVaclav Hapla PetscFunctionReturn(0); 2514eb91f321SVaclav Hapla } 2515eb91f321SVaclav Hapla 2516*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 2517*d71ae5a4SJacob Faibussowitsch { 25186e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 25196e4ee0c6SHong Zhang Mat a, b; 252090ace30eSBarry Smith 25216e4ee0c6SHong Zhang PetscFunctionBegin; 25226e4ee0c6SHong Zhang a = matA->A; 25236e4ee0c6SHong Zhang b = matB->A; 25242cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 25252cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 25266e4ee0c6SHong Zhang PetscFunctionReturn(0); 25276e4ee0c6SHong Zhang } 252890ace30eSBarry Smith 2529*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2530*d71ae5a4SJacob Faibussowitsch { 25316718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2532baa3c1c6SHong Zhang 2533baa3c1c6SHong Zhang PetscFunctionBegin; 25349566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 25359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25369566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2537baa3c1c6SHong Zhang PetscFunctionReturn(0); 2538baa3c1c6SHong Zhang } 2539baa3c1c6SHong Zhang 2540*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2541*d71ae5a4SJacob Faibussowitsch { 25426718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2543cc48ffa7SToby Isaac 2544cc48ffa7SToby Isaac PetscFunctionBegin; 25459566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 25469566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 25479566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2548cc48ffa7SToby Isaac PetscFunctionReturn(0); 2549cc48ffa7SToby Isaac } 2550cc48ffa7SToby Isaac 2551*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2552*d71ae5a4SJacob Faibussowitsch { 2553baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 25546718818eSStefano Zampini Mat_TransMatMultDense *atb; 2555cb20be35SHong Zhang MPI_Comm comm; 25566718818eSStefano Zampini PetscMPIInt size, *recvcounts; 25576718818eSStefano Zampini PetscScalar *carray, *sendbuf; 2558637a0070SStefano Zampini const PetscScalar *atbarray; 2559a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 2560e68c0b26SHong Zhang const PetscInt *ranges; 2561cb20be35SHong Zhang 2562cb20be35SHong Zhang PetscFunctionBegin; 25636718818eSStefano Zampini MatCheckProduct(C, 3); 25645f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 25656718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25666718818eSStefano Zampini recvcounts = atb->recvcounts; 25676718818eSStefano Zampini sendbuf = atb->sendbuf; 25686718818eSStefano Zampini 25699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 25709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2571e68c0b26SHong Zhang 2572c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25739566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 2574cb20be35SHong Zhang 25759566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 2576cb20be35SHong Zhang 2577660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 25799566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 2580637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 2581baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 2582a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 2583cb20be35SHong Zhang } 2584cb20be35SHong Zhang } 25859566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 2586637a0070SStefano Zampini 2587c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 25899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 25909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 25919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 25929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 2593cb20be35SHong Zhang PetscFunctionReturn(0); 2594cb20be35SHong Zhang } 2595cb20be35SHong Zhang 2596*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2597*d71ae5a4SJacob Faibussowitsch { 2598cb20be35SHong Zhang MPI_Comm comm; 2599baa3c1c6SHong Zhang PetscMPIInt size; 2600660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 2601baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26026718818eSStefano Zampini PetscBool cisdense; 26030acaeb71SStefano Zampini PetscInt i; 26040acaeb71SStefano Zampini const PetscInt *ranges; 2605cb20be35SHong Zhang 2606cb20be35SHong Zhang PetscFunctionBegin; 26078f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 26085f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 26099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2610cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 261198921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2612cb20be35SHong Zhang } 2613cb20be35SHong Zhang 26144222ddf1SHong Zhang /* create matrix product C */ 26159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 26169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 261748a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 26189566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2619baa3c1c6SHong Zhang 26204222ddf1SHong Zhang /* create data structure for reuse C */ 26219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 26229566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26234222ddf1SHong Zhang cM = C->rmap->N; 26249566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 26259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 26260acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2627baa3c1c6SHong Zhang 26286718818eSStefano Zampini C->product->data = atb; 26296718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2630cb20be35SHong Zhang PetscFunctionReturn(0); 2631cb20be35SHong Zhang } 2632cb20be35SHong Zhang 2633*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2634*d71ae5a4SJacob Faibussowitsch { 2635cc48ffa7SToby Isaac MPI_Comm comm; 2636cc48ffa7SToby Isaac PetscMPIInt i, size; 2637cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2638cc48ffa7SToby Isaac PetscMPIInt tag; 26394222ddf1SHong Zhang PetscInt alg; 2640cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26414222ddf1SHong Zhang Mat_Product *product = C->product; 26424222ddf1SHong Zhang PetscBool flg; 2643cc48ffa7SToby Isaac 2644cc48ffa7SToby Isaac PetscFunctionBegin; 26456718818eSStefano Zampini MatCheckProduct(C, 4); 26465f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 26474222ddf1SHong Zhang /* check local size of A and B */ 26485f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2649cc48ffa7SToby Isaac 26509566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2651637a0070SStefano Zampini alg = flg ? 0 : 1; 2652cc48ffa7SToby Isaac 26534222ddf1SHong Zhang /* setup matrix product C */ 26549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 26559566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 26569566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 26584222ddf1SHong Zhang 26594222ddf1SHong Zhang /* create data structure for reuse C */ 26609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 26619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 26629566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2663cc48ffa7SToby Isaac abt->tag = tag; 2664faa55883SToby Isaac abt->alg = alg; 2665faa55883SToby Isaac switch (alg) { 26664222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2667cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2668cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26699566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2670faa55883SToby Isaac break; 26714222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2674faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2675faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2676faa55883SToby Isaac break; 2677faa55883SToby Isaac } 2678cc48ffa7SToby Isaac 26796718818eSStefano Zampini C->product->data = abt; 26806718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26814222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2682cc48ffa7SToby Isaac PetscFunctionReturn(0); 2683cc48ffa7SToby Isaac } 2684cc48ffa7SToby Isaac 2685*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2686*d71ae5a4SJacob Faibussowitsch { 2687cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 26886718818eSStefano Zampini Mat_MatTransMultDense *abt; 2689cc48ffa7SToby Isaac MPI_Comm comm; 2690cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2691f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2692cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2693cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2694637a0070SStefano Zampini const PetscScalar *av, *bv; 269523fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2696cc48ffa7SToby Isaac MPI_Request reqs[2]; 2697cc48ffa7SToby Isaac const PetscInt *ranges; 2698cc48ffa7SToby Isaac 2699cc48ffa7SToby Isaac PetscFunctionBegin; 27006718818eSStefano Zampini MatCheckProduct(C, 3); 27015f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 27026718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 27039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 27049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 27059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 27069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 27079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 27089566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 27099566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 27109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 27119566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 27129566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 27139566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 27149566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 27159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2716cc48ffa7SToby Isaac bn = B->rmap->n; 2717637a0070SStefano Zampini if (blda == bn) { 2718637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2719cc48ffa7SToby Isaac } else { 2720cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2721cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2722ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2723cc48ffa7SToby Isaac } 2724cc48ffa7SToby Isaac } 2725cc48ffa7SToby Isaac if (size > 1) { 2726cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2727cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2728cc48ffa7SToby Isaac } else { 2729cc48ffa7SToby Isaac sendto = recvfrom = 0; 2730cc48ffa7SToby Isaac } 27319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 27329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2733cc48ffa7SToby Isaac recvisfrom = rank; 2734cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2735cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2736cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2737cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2738cc48ffa7SToby Isaac 2739cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2740cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2741cc48ffa7SToby Isaac sendsiz = cK * bn; 2742cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2743cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2746cc48ffa7SToby Isaac } 2747cc48ffa7SToby Isaac 2748cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27499566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2750792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2751cc48ffa7SToby Isaac 2752cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2753cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2755cc48ffa7SToby Isaac } 2756cc48ffa7SToby Isaac bn = nextbn; 2757cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2758cc48ffa7SToby Isaac sendbuf = recvbuf; 2759cc48ffa7SToby Isaac } 27609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 27619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 27629566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 27639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 27649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 2765cc48ffa7SToby Isaac PetscFunctionReturn(0); 2766cc48ffa7SToby Isaac } 2767cc48ffa7SToby Isaac 2768*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2769*d71ae5a4SJacob Faibussowitsch { 2770faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 27716718818eSStefano Zampini Mat_MatTransMultDense *abt; 2772faa55883SToby Isaac MPI_Comm comm; 2773637a0070SStefano Zampini PetscMPIInt size; 2774637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2775637a0070SStefano Zampini const PetscScalar *av, *bv; 2776637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2777faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2778637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2779faa55883SToby Isaac 2780faa55883SToby Isaac PetscFunctionBegin; 27816718818eSStefano Zampini MatCheckProduct(C, 3); 27825f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 27836718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 27849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 27859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 27869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 27879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 27889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 27899566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 27909566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 27919566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 27929566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 27939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2794faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2795faa55883SToby Isaac bn = B->rmap->n; 2796faa55883SToby Isaac sendbuf = abt->buf[0]; 2797faa55883SToby Isaac recvbuf = abt->buf[1]; 2798faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2799ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2800faa55883SToby Isaac } 28019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 28029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28039566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 28049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 28059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2806792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 28079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 28089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 28099566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 28109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 28119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 2812faa55883SToby Isaac PetscFunctionReturn(0); 2813faa55883SToby Isaac } 2814faa55883SToby Isaac 2815*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2816*d71ae5a4SJacob Faibussowitsch { 28176718818eSStefano Zampini Mat_MatTransMultDense *abt; 2818faa55883SToby Isaac 2819faa55883SToby Isaac PetscFunctionBegin; 28206718818eSStefano Zampini MatCheckProduct(C, 3); 28215f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 28226718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2823faa55883SToby Isaac switch (abt->alg) { 2824*d71ae5a4SJacob Faibussowitsch case 1: 2825*d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2826*d71ae5a4SJacob Faibussowitsch break; 2827*d71ae5a4SJacob Faibussowitsch default: 2828*d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2829*d71ae5a4SJacob Faibussowitsch break; 2830faa55883SToby Isaac } 2831faa55883SToby Isaac PetscFunctionReturn(0); 2832faa55883SToby Isaac } 2833faa55883SToby Isaac 2834*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2835*d71ae5a4SJacob Faibussowitsch { 28366718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2837320f2790SHong Zhang 2838320f2790SHong Zhang PetscFunctionBegin; 28399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28409566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28429566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2843320f2790SHong Zhang PetscFunctionReturn(0); 2844320f2790SHong Zhang } 2845320f2790SHong Zhang 28465242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2847*d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2848*d71ae5a4SJacob Faibussowitsch { 28496718818eSStefano Zampini Mat_MatMultDense *ab; 2850320f2790SHong Zhang 2851320f2790SHong Zhang PetscFunctionBegin; 28526718818eSStefano Zampini MatCheckProduct(C, 3); 28535f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 28546718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 28559566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 28569566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 28579566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 28589566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 2859320f2790SHong Zhang PetscFunctionReturn(0); 2860320f2790SHong Zhang } 2861320f2790SHong Zhang 2862*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2863*d71ae5a4SJacob Faibussowitsch { 2864320f2790SHong Zhang Mat Ae, Be, Ce; 2865320f2790SHong Zhang Mat_MatMultDense *ab; 2866320f2790SHong Zhang 2867320f2790SHong Zhang PetscFunctionBegin; 28686718818eSStefano Zampini MatCheckProduct(C, 4); 28695f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 28704222ddf1SHong Zhang /* check local size of A and B */ 2871320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 287298921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2873320f2790SHong Zhang } 2874320f2790SHong Zhang 28754222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 28789566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 28799566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28809566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2881320f2790SHong Zhang 28829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 28849566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 28859566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28869566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2887320f2790SHong Zhang 28884222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28899566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 28909566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 28914222ddf1SHong Zhang 28924222ddf1SHong Zhang /* setup C */ 28939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 28949566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 28959566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2896320f2790SHong Zhang 2897320f2790SHong Zhang /* create data structure for reuse Cdense */ 28989566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2899320f2790SHong Zhang ab->Ae = Ae; 2900320f2790SHong Zhang ab->Be = Be; 2901320f2790SHong Zhang ab->Ce = Ce; 29026718818eSStefano Zampini 29036718818eSStefano Zampini C->product->data = ab; 29046718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29054222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2906320f2790SHong Zhang PetscFunctionReturn(0); 2907320f2790SHong Zhang } 29084222ddf1SHong Zhang #endif 29094222ddf1SHong Zhang /* ----------------------------------------------- */ 29104222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2911*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2912*d71ae5a4SJacob Faibussowitsch { 2913320f2790SHong Zhang PetscFunctionBegin; 29144222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29154222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2916320f2790SHong Zhang PetscFunctionReturn(0); 2917320f2790SHong Zhang } 29185242a7b1SHong Zhang #endif 291986aefd0dSHong Zhang 2920*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2921*d71ae5a4SJacob Faibussowitsch { 29224222ddf1SHong Zhang Mat_Product *product = C->product; 29234222ddf1SHong Zhang Mat A = product->A, B = product->B; 29244222ddf1SHong Zhang 29254222ddf1SHong Zhang PetscFunctionBegin; 29264222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 292798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 29286718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29296718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29304222ddf1SHong Zhang PetscFunctionReturn(0); 29314222ddf1SHong Zhang } 29324222ddf1SHong Zhang 2933*d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2934*d71ae5a4SJacob Faibussowitsch { 29354222ddf1SHong Zhang Mat_Product *product = C->product; 29364222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 29374222ddf1SHong Zhang PetscInt alg, nalg = 2; 29384222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29394222ddf1SHong Zhang 29404222ddf1SHong Zhang PetscFunctionBegin; 29414222ddf1SHong Zhang /* Set default algorithm */ 29424222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 294448a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 29454222ddf1SHong Zhang 29464222ddf1SHong Zhang /* Get runtime option */ 29474222ddf1SHong Zhang if (product->api_user) { 2948d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 29499566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2950d0609cedSBarry Smith PetscOptionsEnd(); 29514222ddf1SHong Zhang } else { 2952d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 29539566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2954d0609cedSBarry Smith PetscOptionsEnd(); 29554222ddf1SHong Zhang } 295648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 29574222ddf1SHong Zhang 29584222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29594222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29604222ddf1SHong Zhang PetscFunctionReturn(0); 29614222ddf1SHong Zhang } 29624222ddf1SHong Zhang 2963*d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2964*d71ae5a4SJacob Faibussowitsch { 29654222ddf1SHong Zhang Mat_Product *product = C->product; 29664222ddf1SHong Zhang 29674222ddf1SHong Zhang PetscFunctionBegin; 29684222ddf1SHong Zhang switch (product->type) { 29694222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2970*d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2971*d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2972*d71ae5a4SJacob Faibussowitsch break; 29734222ddf1SHong Zhang #endif 2974*d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2975*d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2976*d71ae5a4SJacob Faibussowitsch break; 2977*d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2978*d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2979*d71ae5a4SJacob Faibussowitsch break; 2980*d71ae5a4SJacob Faibussowitsch default: 2981*d71ae5a4SJacob Faibussowitsch break; 29824222ddf1SHong Zhang } 29834222ddf1SHong Zhang PetscFunctionReturn(0); 29844222ddf1SHong Zhang } 2985