xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision dc0b31ed242eb6637dca0468fbfa12899dc55c4b)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
704fea9ffSBarry Smith 
87c4f633dSBarry Smith #include "../src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg;
11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d;
12eae6fb2eSBarry Smith #endif
138965ea79SLois Curfman McInnes 
14ba8c8a56SBarry Smith #undef __FUNCT__
15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
16ab92ecdeSBarry Smith /*@
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
19ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
20ab92ecdeSBarry Smith 
21ab92ecdeSBarry Smith     Input Parameter:
22ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
23ab92ecdeSBarry Smith 
24ab92ecdeSBarry Smith     Output Parameter:
25ab92ecdeSBarry Smith .      B - the inner matrix
26ab92ecdeSBarry Smith 
278e6c10adSSatish Balay     Level: intermediate
288e6c10adSSatish Balay 
29ab92ecdeSBarry Smith @*/
30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
31ab92ecdeSBarry Smith {
32ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
33ab92ecdeSBarry Smith   PetscErrorCode ierr;
34ab92ecdeSBarry Smith   PetscTruth     flg;
35ab92ecdeSBarry Smith 
36ab92ecdeSBarry Smith   PetscFunctionBegin;
37ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
38ab92ecdeSBarry Smith   if (flg) {
39ab92ecdeSBarry Smith     *B = mat->A;
40ab92ecdeSBarry Smith   } else {
41ab92ecdeSBarry Smith     *B = A;
42ab92ecdeSBarry Smith   }
43ab92ecdeSBarry Smith   PetscFunctionReturn(0);
44ab92ecdeSBarry Smith }
45ab92ecdeSBarry Smith 
46ab92ecdeSBarry Smith #undef __FUNCT__
47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
49ba8c8a56SBarry Smith {
50ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
51ba8c8a56SBarry Smith   PetscErrorCode ierr;
52d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith   PetscFunctionBegin;
55ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
56ba8c8a56SBarry Smith   lrow = row - rstart;
57ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
61ba8c8a56SBarry Smith #undef __FUNCT__
62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
64ba8c8a56SBarry Smith {
65ba8c8a56SBarry Smith   PetscErrorCode ierr;
66ba8c8a56SBarry Smith 
67ba8c8a56SBarry Smith   PetscFunctionBegin;
68ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
69ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
70ba8c8a56SBarry Smith   PetscFunctionReturn(0);
71ba8c8a56SBarry Smith }
72ba8c8a56SBarry Smith 
730de54da6SSatish Balay EXTERN_C_BEGIN
744a2ae208SSatish Balay #undef __FUNCT__
754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
770de54da6SSatish Balay {
780de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
8187828ca2SBarry Smith   PetscScalar    *array;
820de54da6SSatish Balay   MPI_Comm       comm;
830de54da6SSatish Balay 
840de54da6SSatish Balay   PetscFunctionBegin;
85d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
860de54da6SSatish Balay 
870de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
880de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
890de54da6SSatish Balay 
900de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
910de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
92f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
93f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
947adad957SLisandro Dalcin   ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
955c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
960de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
970de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
980de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
990de54da6SSatish Balay 
1000de54da6SSatish Balay   *iscopy = PETSC_TRUE;
1010de54da6SSatish Balay   PetscFunctionReturn(0);
1020de54da6SSatish Balay }
1030de54da6SSatish Balay EXTERN_C_END
1040de54da6SSatish Balay 
1054a2ae208SSatish Balay #undef __FUNCT__
1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1088965ea79SLois Curfman McInnes {
10939b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
110dfbe8321SBarry Smith   PetscErrorCode ierr;
111d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
112273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1138965ea79SLois Curfman McInnes 
1143a40ed3dSBarry Smith   PetscFunctionBegin;
1158965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1165ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
117d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1188965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1198965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
12039b7565bSBarry Smith       if (roworiented) {
12139b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1223a40ed3dSBarry Smith       } else {
1238965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1245ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
125d0f46423SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12639b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12739b7565bSBarry Smith         }
1288965ea79SLois Curfman McInnes       }
1293a40ed3dSBarry Smith     } else {
1303782ba37SSatish Balay       if (!A->donotstash) {
13139b7565bSBarry Smith         if (roworiented) {
1328798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
133d36fbae8SSatish Balay         } else {
1348798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
13539b7565bSBarry Smith         }
136b49de8d1SLois Curfman McInnes       }
137b49de8d1SLois Curfman McInnes     }
1383782ba37SSatish Balay   }
1393a40ed3dSBarry Smith   PetscFunctionReturn(0);
140b49de8d1SLois Curfman McInnes }
141b49de8d1SLois Curfman McInnes 
1424a2ae208SSatish Balay #undef __FUNCT__
1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
145b49de8d1SLois Curfman McInnes {
146b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
147dfbe8321SBarry Smith   PetscErrorCode ierr;
148d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
149b49de8d1SLois Curfman McInnes 
1503a40ed3dSBarry Smith   PetscFunctionBegin;
151b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
15297e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
153d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
154b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
155b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
156b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
15797e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
158d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) {
15929bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
160a8c6a408SBarry Smith         }
161b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
162b49de8d1SLois Curfman McInnes       }
163a8c6a408SBarry Smith     } else {
16429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1658965ea79SLois Curfman McInnes     }
1668965ea79SLois Curfman McInnes   }
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1688965ea79SLois Curfman McInnes }
1698965ea79SLois Curfman McInnes 
1704a2ae208SSatish Balay #undef __FUNCT__
1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
173ff14e315SSatish Balay {
174ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
175dfbe8321SBarry Smith   PetscErrorCode ierr;
176ff14e315SSatish Balay 
1773a40ed3dSBarry Smith   PetscFunctionBegin;
178ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
1793a40ed3dSBarry Smith   PetscFunctionReturn(0);
180ff14e315SSatish Balay }
181ff14e315SSatish Balay 
1824a2ae208SSatish Balay #undef __FUNCT__
1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
185ca3fa75bSLois Curfman McInnes {
186ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
187ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1886849ba73SBarry Smith   PetscErrorCode ierr;
1895d0c19d7SBarry Smith   PetscInt       i,j,rstart,rend,nrows,ncols,nlrows,nlcols;
1905d0c19d7SBarry Smith   const PetscInt *irow,*icol;
19187828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
192ca3fa75bSLois Curfman McInnes   Mat            newmat;
193ca3fa75bSLois Curfman McInnes 
194ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
195ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
196ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
197b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
198b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
199ca3fa75bSLois Curfman McInnes 
200ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2017eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2027eba5e9cSLois Curfman McInnes      original matrix! */
203ca3fa75bSLois Curfman McInnes 
204ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2057eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
206ca3fa75bSLois Curfman McInnes 
207ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
208ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
20929bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2107eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
211ca3fa75bSLois Curfman McInnes     newmat = *B;
212ca3fa75bSLois Curfman McInnes   } else {
213ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
2147adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
215f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
2167adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
217878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
218ca3fa75bSLois Curfman McInnes   }
219ca3fa75bSLois Curfman McInnes 
220ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
221ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
222ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
223ca3fa75bSLois Curfman McInnes 
224ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
22525a33276SHong Zhang     av = v + ((Mat_SeqDense *)mat->A->data)->lda*icol[i];
226ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2277eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
228ca3fa75bSLois Curfman McInnes     }
229ca3fa75bSLois Curfman McInnes   }
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
232ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
234ca3fa75bSLois Curfman McInnes 
235ca3fa75bSLois Curfman McInnes   /* Free work space */
236ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
237ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
238ca3fa75bSLois Curfman McInnes   *B = newmat;
239ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
240ca3fa75bSLois Curfman McInnes }
241ca3fa75bSLois Curfman McInnes 
2424a2ae208SSatish Balay #undef __FUNCT__
2434a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
244dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
245ff14e315SSatish Balay {
2463a40ed3dSBarry Smith   PetscFunctionBegin;
2473a40ed3dSBarry Smith   PetscFunctionReturn(0);
248ff14e315SSatish Balay }
249ff14e315SSatish Balay 
2504a2ae208SSatish Balay #undef __FUNCT__
2514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
252dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2538965ea79SLois Curfman McInnes {
25439ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2557adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)mat)->comm;
256dfbe8321SBarry Smith   PetscErrorCode ierr;
25713f74950SBarry Smith   PetscInt       nstash,reallocs;
2588965ea79SLois Curfman McInnes   InsertMode     addv;
2598965ea79SLois Curfman McInnes 
2603a40ed3dSBarry Smith   PetscFunctionBegin;
2618965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
262ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2637056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
26429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2658965ea79SLois Curfman McInnes   }
266e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2678965ea79SLois Curfman McInnes 
268d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2698798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
270ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
2728965ea79SLois Curfman McInnes }
2738965ea79SLois Curfman McInnes 
2744a2ae208SSatish Balay #undef __FUNCT__
2754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
276dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2778965ea79SLois Curfman McInnes {
27839ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
2796849ba73SBarry Smith   PetscErrorCode  ierr;
28013f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
28113f74950SBarry Smith   PetscMPIInt     n;
28287828ca2SBarry Smith   PetscScalar     *val;
283e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
2848965ea79SLois Curfman McInnes 
2853a40ed3dSBarry Smith   PetscFunctionBegin;
2868965ea79SLois Curfman McInnes   /*  wait on receives */
2877ef1d9bdSSatish Balay   while (1) {
2888798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2897ef1d9bdSSatish Balay     if (!flg) break;
2908965ea79SLois Curfman McInnes 
2917ef1d9bdSSatish Balay     for (i=0; i<n;) {
2927ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2937ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
2947ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2957ef1d9bdSSatish Balay       else       ncols = n-i;
2967ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2977ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2987ef1d9bdSSatish Balay       i = j;
2998965ea79SLois Curfman McInnes     }
3007ef1d9bdSSatish Balay   }
3018798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3028965ea79SLois Curfman McInnes 
30339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3058965ea79SLois Curfman McInnes 
3066d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3088965ea79SLois Curfman McInnes   }
3093a40ed3dSBarry Smith   PetscFunctionReturn(0);
3108965ea79SLois Curfman McInnes }
3118965ea79SLois Curfman McInnes 
3124a2ae208SSatish Balay #undef __FUNCT__
3134a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
314dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3158965ea79SLois Curfman McInnes {
316dfbe8321SBarry Smith   PetscErrorCode ierr;
31739ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3183a40ed3dSBarry Smith 
3193a40ed3dSBarry Smith   PetscFunctionBegin;
3203a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3213a40ed3dSBarry Smith   PetscFunctionReturn(0);
3228965ea79SLois Curfman McInnes }
3238965ea79SLois Curfman McInnes 
3248965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3258965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3268965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3273501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3288965ea79SLois Curfman McInnes    routine.
3298965ea79SLois Curfman McInnes */
3304a2ae208SSatish Balay #undef __FUNCT__
3314a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
332f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3338965ea79SLois Curfman McInnes {
33439ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3356849ba73SBarry Smith   PetscErrorCode ierr;
336d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
33713f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
33813f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
3397adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
34013f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
34113f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3427adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
3438965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3448965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
34535d8aa7fSBarry Smith   PetscTruth     found;
3468965ea79SLois Curfman McInnes 
3473a40ed3dSBarry Smith   PetscFunctionBegin;
3488965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
34913f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
35013f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
35113f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3528965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3538965ea79SLois Curfman McInnes     idx = rows[i];
35435d8aa7fSBarry Smith     found = PETSC_FALSE;
3558965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3568965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
357c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3588965ea79SLois Curfman McInnes       }
3598965ea79SLois Curfman McInnes     }
36029bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3618965ea79SLois Curfman McInnes   }
362c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3638965ea79SLois Curfman McInnes 
3648965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
365c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3668965ea79SLois Curfman McInnes 
3678965ea79SLois Curfman McInnes   /* post receives:   */
36813f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
369b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3708965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37113f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3728965ea79SLois Curfman McInnes   }
3738965ea79SLois Curfman McInnes 
3748965ea79SLois Curfman McInnes   /* do sends:
3758965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3768965ea79SLois Curfman McInnes          the ith processor
3778965ea79SLois Curfman McInnes   */
37813f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
379b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
38013f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
3818965ea79SLois Curfman McInnes   starts[0]  = 0;
382c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3838965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3848965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3858965ea79SLois Curfman McInnes   }
3868965ea79SLois Curfman McInnes 
3878965ea79SLois Curfman McInnes   starts[0] = 0;
388c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3898965ea79SLois Curfman McInnes   count = 0;
3908965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
391c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
39213f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3938965ea79SLois Curfman McInnes     }
3948965ea79SLois Curfman McInnes   }
395606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3968965ea79SLois Curfman McInnes 
3978965ea79SLois Curfman McInnes   base = owners[rank];
3988965ea79SLois Curfman McInnes 
3998965ea79SLois Curfman McInnes   /*  wait on receives */
40013f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4018965ea79SLois Curfman McInnes   source = lens + nrecvs;
4028965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4038965ea79SLois Curfman McInnes   while (count) {
404ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4058965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40613f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4078965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4088965ea79SLois Curfman McInnes     lens[imdex]    = n;
4098965ea79SLois Curfman McInnes     slen += n;
4108965ea79SLois Curfman McInnes     count--;
4118965ea79SLois Curfman McInnes   }
412606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4138965ea79SLois Curfman McInnes 
4148965ea79SLois Curfman McInnes   /* move the data into the send scatter */
41513f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4168965ea79SLois Curfman McInnes   count = 0;
4178965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4188965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4198965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4208965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4218965ea79SLois Curfman McInnes     }
4228965ea79SLois Curfman McInnes   }
423606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
424606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
425606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
426606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4278965ea79SLois Curfman McInnes 
4288965ea79SLois Curfman McInnes   /* actually zap the local rows */
429f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
430606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4318965ea79SLois Curfman McInnes 
4328965ea79SLois Curfman McInnes   /* wait on sends */
4338965ea79SLois Curfman McInnes   if (nsends) {
434b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
435ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
436606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4378965ea79SLois Curfman McInnes   }
438606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
439606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4408965ea79SLois Curfman McInnes 
4413a40ed3dSBarry Smith   PetscFunctionReturn(0);
4428965ea79SLois Curfman McInnes }
4438965ea79SLois Curfman McInnes 
4444a2ae208SSatish Balay #undef __FUNCT__
4454a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
446dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4478965ea79SLois Curfman McInnes {
44839ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
449dfbe8321SBarry Smith   PetscErrorCode ierr;
450c456f294SBarry Smith 
4513a40ed3dSBarry Smith   PetscFunctionBegin;
452ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
453ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
45444cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4553a40ed3dSBarry Smith   PetscFunctionReturn(0);
4568965ea79SLois Curfman McInnes }
4578965ea79SLois Curfman McInnes 
4584a2ae208SSatish Balay #undef __FUNCT__
4594a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
460dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4618965ea79SLois Curfman McInnes {
46239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
463dfbe8321SBarry Smith   PetscErrorCode ierr;
464c456f294SBarry Smith 
4653a40ed3dSBarry Smith   PetscFunctionBegin;
466ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
467ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
46844cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4693a40ed3dSBarry Smith   PetscFunctionReturn(0);
4708965ea79SLois Curfman McInnes }
4718965ea79SLois Curfman McInnes 
4724a2ae208SSatish Balay #undef __FUNCT__
4734a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
474dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
475096963f5SLois Curfman McInnes {
476096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
477dfbe8321SBarry Smith   PetscErrorCode ierr;
47887828ca2SBarry Smith   PetscScalar    zero = 0.0;
479096963f5SLois Curfman McInnes 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
4812dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
4827c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
483ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
484ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4853a40ed3dSBarry Smith   PetscFunctionReturn(0);
486096963f5SLois Curfman McInnes }
487096963f5SLois Curfman McInnes 
4884a2ae208SSatish Balay #undef __FUNCT__
4894a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
490dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
491096963f5SLois Curfman McInnes {
492096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
493dfbe8321SBarry Smith   PetscErrorCode ierr;
494096963f5SLois Curfman McInnes 
4953a40ed3dSBarry Smith   PetscFunctionBegin;
4963501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
4977c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
498ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
499ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5003a40ed3dSBarry Smith   PetscFunctionReturn(0);
501096963f5SLois Curfman McInnes }
502096963f5SLois Curfman McInnes 
5034a2ae208SSatish Balay #undef __FUNCT__
5044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
505dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5068965ea79SLois Curfman McInnes {
50739ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
508096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
509dfbe8321SBarry Smith   PetscErrorCode ierr;
510d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
51187828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
512ed3cc1f0SBarry Smith 
5133a40ed3dSBarry Smith   PetscFunctionBegin;
5142dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5151ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
516096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
517d0f46423SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
518d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
519d0f46423SBarry Smith   radd = A->rmap->rstart*m;
52044cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
521096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
522096963f5SLois Curfman McInnes   }
5231ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5243a40ed3dSBarry Smith   PetscFunctionReturn(0);
5258965ea79SLois Curfman McInnes }
5268965ea79SLois Curfman McInnes 
5274a2ae208SSatish Balay #undef __FUNCT__
5284a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
529dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5308965ea79SLois Curfman McInnes {
5313501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
532dfbe8321SBarry Smith   PetscErrorCode ierr;
53301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
53401b82886SBarry Smith   Mat_Plapack   *lu=(Mat_Plapack*)(mat->spptr);
53501b82886SBarry Smith #endif
536ed3cc1f0SBarry Smith 
5373a40ed3dSBarry Smith   PetscFunctionBegin;
53894d884c6SBarry Smith 
539aa482453SBarry Smith #if defined(PETSC_USE_LOG)
540d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5418965ea79SLois Curfman McInnes #endif
5428798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5433501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
54405b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
54505b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
54601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
5472fbe02b9SBarry Smith   if (lu) {
54862b4c0b3SBarry Smith     ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr);
54962b4c0b3SBarry Smith     ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr);
55062b4c0b3SBarry Smith     ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr);
55109d27a7eSBarry Smith 
5522fbe02b9SBarry Smith     if (lu->is_pla) {
55301b82886SBarry Smith       ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr);
55401b82886SBarry Smith       ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr);
55501b82886SBarry Smith       ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr);
556622d7880SLois Curfman McInnes     }
5572fbe02b9SBarry Smith   }
55801b82886SBarry Smith #endif
55901b82886SBarry Smith 
560606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
561dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
562901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
563901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
5644ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5654ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5664ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5673a40ed3dSBarry Smith   PetscFunctionReturn(0);
5688965ea79SLois Curfman McInnes }
56939ddd567SLois Curfman McInnes 
5704a2ae208SSatish Balay #undef __FUNCT__
5714a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5726849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5738965ea79SLois Curfman McInnes {
57439ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
575dfbe8321SBarry Smith   PetscErrorCode    ierr;
576aa05aa95SBarry Smith   PetscViewerFormat format;
577aa05aa95SBarry Smith   int               fd;
578d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
579aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
580578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
581aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
582aa05aa95SBarry Smith   MPI_Status        status;
5837056b6fcSBarry Smith 
5843a40ed3dSBarry Smith   PetscFunctionBegin;
58539ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58639ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
587aa05aa95SBarry Smith   } else {
588aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
5897adad957SLisandro Dalcin     ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
5907adad957SLisandro Dalcin     ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
591aa05aa95SBarry Smith 
592aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
5937973ad04SBarry Smith     if (format == PETSC_VIEWER_NATIVE) {
594aa05aa95SBarry Smith 
595aa05aa95SBarry Smith       if (!rank) {
596aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
597aa05aa95SBarry Smith         header[0] = MAT_FILE_COOKIE;
598d0f46423SBarry Smith         header[1] = mat->rmap->N;
599aa05aa95SBarry Smith         header[2] = N;
600aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
601aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
602aa05aa95SBarry Smith 
603aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
604d0f46423SBarry Smith         mmax = mat->rmap->n;
605aa05aa95SBarry Smith         for (i=1; i<size; i++) {
606d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6078965ea79SLois Curfman McInnes         }
608aa05aa95SBarry Smith         ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr);
609aa05aa95SBarry Smith 
610aa05aa95SBarry Smith         /* write out local array, by rows */
611d0f46423SBarry Smith         m    = mat->rmap->n;
612aa05aa95SBarry Smith         v    = a->v;
613aa05aa95SBarry Smith         for (j=0; j<N; j++) {
614aa05aa95SBarry Smith           for (i=0; i<m; i++) {
615578230a0SSatish Balay             work[j + i*N] = *v++;
616aa05aa95SBarry Smith           }
617aa05aa95SBarry Smith         }
618aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
619aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
620aa05aa95SBarry Smith         mmax = 0;
621aa05aa95SBarry Smith         for (i=1; i<size; i++) {
622d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
623aa05aa95SBarry Smith         }
624578230a0SSatish Balay         ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr);
625aa05aa95SBarry Smith         for(k = 1; k < size; k++) {
626f8009846SMatthew Knepley           v    = vv;
627d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
6287adad957SLisandro Dalcin           ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
629aa05aa95SBarry Smith 
630aa05aa95SBarry Smith           for(j = 0; j < N; j++) {
631aa05aa95SBarry Smith             for(i = 0; i < m; i++) {
632578230a0SSatish Balay               work[j + i*N] = *v++;
633aa05aa95SBarry Smith             }
634aa05aa95SBarry Smith           }
635aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
636aa05aa95SBarry Smith         }
637aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
638578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
639aa05aa95SBarry Smith       } else {
640d0f46423SBarry Smith         ierr = MPI_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
641aa05aa95SBarry Smith       }
6424aa34b0aSBarry Smith     } else {
6437973ad04SBarry Smith       SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE");
644aa05aa95SBarry Smith     }
645aa05aa95SBarry Smith   }
6463a40ed3dSBarry Smith   PetscFunctionReturn(0);
6478965ea79SLois Curfman McInnes }
6488965ea79SLois Curfman McInnes 
6494a2ae208SSatish Balay #undef __FUNCT__
6504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6516849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6528965ea79SLois Curfman McInnes {
65339ddd567SLois Curfman McInnes   Mat_MPIDense          *mdn = (Mat_MPIDense*)mat->data;
654dfbe8321SBarry Smith   PetscErrorCode        ierr;
65532dcc486SBarry Smith   PetscMPIInt           size = mdn->size,rank = mdn->rank;
656a313700dSBarry Smith   const PetscViewerType vtype;
65732077d6dSBarry Smith   PetscTruth            iascii,isdraw;
658b0a32e0cSBarry Smith   PetscViewer           sviewer;
659f3ef73ceSBarry Smith   PetscViewerFormat     format;
66001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
6615d00a290SHong Zhang   Mat_Plapack           *lu;
66201b82886SBarry Smith #endif
6638965ea79SLois Curfman McInnes 
6643a40ed3dSBarry Smith   PetscFunctionBegin;
66532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
666fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
66732077d6dSBarry Smith   if (iascii) {
668b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
669b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
670456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6714e220ebcSLois Curfman McInnes       MatInfo info;
672888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
673d0f46423SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,
67477431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
675b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
67601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
67701b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr);
6785d00a290SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr);
6795d00a290SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr);
6805d00a290SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr);
6815d00a290SHong Zhang       if (mat->factor){
6825d00a290SHong Zhang         lu=(Mat_Plapack*)(mat->spptr);
68301b82886SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"  Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr);
6845d00a290SHong Zhang       }
6855d00a290SHong Zhang #else
6865d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
68701b82886SBarry Smith #endif
6883a40ed3dSBarry Smith       PetscFunctionReturn(0);
689fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6903a40ed3dSBarry Smith       PetscFunctionReturn(0);
6918965ea79SLois Curfman McInnes     }
692f1af5d2fSBarry Smith   } else if (isdraw) {
693b0a32e0cSBarry Smith     PetscDraw  draw;
694f1af5d2fSBarry Smith     PetscTruth isnull;
695f1af5d2fSBarry Smith 
696b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
697b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
698f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
699f1af5d2fSBarry Smith   }
70077ed5343SBarry Smith 
7018965ea79SLois Curfman McInnes   if (size == 1) {
70239ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
7033a40ed3dSBarry Smith   } else {
7048965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7058965ea79SLois Curfman McInnes     Mat         A;
706d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
707ba8c8a56SBarry Smith     PetscInt    *cols;
708ba8c8a56SBarry Smith     PetscScalar *vals;
7098965ea79SLois Curfman McInnes 
7107adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
7118965ea79SLois Curfman McInnes     if (!rank) {
712f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7133a40ed3dSBarry Smith     } else {
714f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7158965ea79SLois Curfman McInnes     }
7167adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
717878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
718878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
71952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
7208965ea79SLois Curfman McInnes 
72139ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
72239ddd567SLois Curfman McInnes        but it's quick for now */
72351022da4SBarry Smith     A->insertmode = INSERT_VALUES;
724d0f46423SBarry Smith     row = mat->rmap->rstart; m = mdn->A->rmap->n;
7258965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
726ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
727ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
728ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72939ddd567SLois Curfman McInnes       row++;
7308965ea79SLois Curfman McInnes     }
7318965ea79SLois Curfman McInnes 
7326d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7336d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
734b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
735b9b97703SBarry Smith     if (!rank) {
7366831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7378965ea79SLois Curfman McInnes     }
738b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
739b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7408965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
7418965ea79SLois Curfman McInnes   }
7423a40ed3dSBarry Smith   PetscFunctionReturn(0);
7438965ea79SLois Curfman McInnes }
7448965ea79SLois Curfman McInnes 
7454a2ae208SSatish Balay #undef __FUNCT__
7464a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
747dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7488965ea79SLois Curfman McInnes {
749dfbe8321SBarry Smith   PetscErrorCode ierr;
75032077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
7518965ea79SLois Curfman McInnes 
752433994e6SBarry Smith   PetscFunctionBegin;
7530f5bd95cSBarry Smith 
75432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
755fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
756b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
757fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
7580f5bd95cSBarry Smith 
75932077d6dSBarry Smith   if (iascii || issocket || isdraw) {
760f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7610f5bd95cSBarry Smith   } else if (isbinary) {
7623a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
7635cd90555SBarry Smith   } else {
764958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
7658965ea79SLois Curfman McInnes   }
7663a40ed3dSBarry Smith   PetscFunctionReturn(0);
7678965ea79SLois Curfman McInnes }
7688965ea79SLois Curfman McInnes 
7694a2ae208SSatish Balay #undef __FUNCT__
7704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
771dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7728965ea79SLois Curfman McInnes {
7733501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7743501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
775dfbe8321SBarry Smith   PetscErrorCode ierr;
776329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7778965ea79SLois Curfman McInnes 
7783a40ed3dSBarry Smith   PetscFunctionBegin;
7794e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7804e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7814e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7824e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7838965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7844e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7854e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7864e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7874e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7884e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7898965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7907adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
7914e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7924e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7934e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7944e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7954e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7968965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7977adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
7984e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7994e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
8004e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8014e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8024e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8038965ea79SLois Curfman McInnes   }
8044e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8054e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8064e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8073a40ed3dSBarry Smith   PetscFunctionReturn(0);
8088965ea79SLois Curfman McInnes }
8098965ea79SLois Curfman McInnes 
8104a2ae208SSatish Balay #undef __FUNCT__
8114a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
8124e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg)
8138965ea79SLois Curfman McInnes {
81439ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
815dfbe8321SBarry Smith   PetscErrorCode ierr;
8168965ea79SLois Curfman McInnes 
8173a40ed3dSBarry Smith   PetscFunctionBegin;
81812c028f9SKris Buschelman   switch (op) {
819512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
82012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
82112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8224e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82312c028f9SKris Buschelman     break;
82412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8254e0d8c25SBarry Smith     a->roworiented = flg;
8264e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82712c028f9SKris Buschelman     break;
8284e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
830290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83112c028f9SKris Buschelman     break;
83212c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8334e0d8c25SBarry Smith     a->donotstash = flg;
83412c028f9SKris Buschelman     break;
83577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8379a4540c5SBarry Smith   case MAT_HERMITIAN:
8389a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
839600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
840290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
84177e54ba9SKris Buschelman     break;
84212c028f9SKris Buschelman   default:
843600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8443a40ed3dSBarry Smith   }
8453a40ed3dSBarry Smith   PetscFunctionReturn(0);
8468965ea79SLois Curfman McInnes }
8478965ea79SLois Curfman McInnes 
8488965ea79SLois Curfman McInnes 
8494a2ae208SSatish Balay #undef __FUNCT__
8504a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
851dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8525b2fa520SLois Curfman McInnes {
8535b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8545b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85587828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
856dfbe8321SBarry Smith   PetscErrorCode ierr;
857d0f46423SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8585b2fa520SLois Curfman McInnes 
8595b2fa520SLois Curfman McInnes   PetscFunctionBegin;
86072d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8615b2fa520SLois Curfman McInnes   if (ll) {
86272d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
863175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8641ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8655b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8665b2fa520SLois Curfman McInnes       x = l[i];
8675b2fa520SLois Curfman McInnes       v = mat->v + i;
8685b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8695b2fa520SLois Curfman McInnes     }
8701ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
871efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8725b2fa520SLois Curfman McInnes   }
8735b2fa520SLois Curfman McInnes   if (rr) {
874175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
875175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
876ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
877ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8781ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8795b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8805b2fa520SLois Curfman McInnes       x = r[i];
8815b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8825b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8835b2fa520SLois Curfman McInnes     }
8841ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
885efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8865b2fa520SLois Curfman McInnes   }
8875b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8885b2fa520SLois Curfman McInnes }
8895b2fa520SLois Curfman McInnes 
8904a2ae208SSatish Balay #undef __FUNCT__
8914a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
892dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
893096963f5SLois Curfman McInnes {
8943501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8953501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
896dfbe8321SBarry Smith   PetscErrorCode ierr;
89713f74950SBarry Smith   PetscInt       i,j;
898329f5518SBarry Smith   PetscReal      sum = 0.0;
89987828ca2SBarry Smith   PetscScalar    *v = mat->v;
9003501a2bdSLois Curfman McInnes 
9013a40ed3dSBarry Smith   PetscFunctionBegin;
9023501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
903064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9043501a2bdSLois Curfman McInnes   } else {
9053501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
906d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
907aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
908329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9093501a2bdSLois Curfman McInnes #else
9103501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
9113501a2bdSLois Curfman McInnes #endif
9123501a2bdSLois Curfman McInnes       }
9137adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
914064f8208SBarry Smith       *nrm = sqrt(*nrm);
915*dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9163a40ed3dSBarry Smith     } else if (type == NORM_1) {
917329f5518SBarry Smith       PetscReal *tmp,*tmp2;
918d0f46423SBarry Smith       ierr = PetscMalloc(2*A->cmap->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
919d0f46423SBarry Smith       tmp2 = tmp + A->cmap->N;
920d0f46423SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
921064f8208SBarry Smith       *nrm = 0.0;
9223501a2bdSLois Curfman McInnes       v = mat->v;
923d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
924d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
92567e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9263501a2bdSLois Curfman McInnes         }
9273501a2bdSLois Curfman McInnes       }
928d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
929d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
930064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9313501a2bdSLois Curfman McInnes       }
932606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
933d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9343a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
935329f5518SBarry Smith       PetscReal ntemp;
9363501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
9377adad957SLisandro Dalcin       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
9383a40ed3dSBarry Smith     } else {
93929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
9403501a2bdSLois Curfman McInnes     }
9413501a2bdSLois Curfman McInnes   }
9423a40ed3dSBarry Smith   PetscFunctionReturn(0);
9433501a2bdSLois Curfman McInnes }
9443501a2bdSLois Curfman McInnes 
9454a2ae208SSatish Balay #undef __FUNCT__
9464a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
947fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9483501a2bdSLois Curfman McInnes {
9493501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9503501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9513501a2bdSLois Curfman McInnes   Mat            B;
952d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9536849ba73SBarry Smith   PetscErrorCode ierr;
95413f74950SBarry Smith   PetscInt       j,i;
95587828ca2SBarry Smith   PetscScalar    *v;
9563501a2bdSLois Curfman McInnes 
9573a40ed3dSBarry Smith   PetscFunctionBegin;
958e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
959fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
9607adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
961d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9627adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
963878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
964fc4dec0aSBarry Smith   } else {
965fc4dec0aSBarry Smith     B = *matout;
966fc4dec0aSBarry Smith   }
9673501a2bdSLois Curfman McInnes 
968d0f46423SBarry Smith   m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
9691acff37aSSatish Balay   ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9703501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9711acff37aSSatish Balay   for (j=0; j<n; j++) {
9723501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9733501a2bdSLois Curfman McInnes     v   += m;
9743501a2bdSLois Curfman McInnes   }
975606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9766d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9776d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
978815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
9793501a2bdSLois Curfman McInnes     *matout = B;
9803501a2bdSLois Curfman McInnes   } else {
981273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9823501a2bdSLois Curfman McInnes   }
9833a40ed3dSBarry Smith   PetscFunctionReturn(0);
984096963f5SLois Curfman McInnes }
985096963f5SLois Curfman McInnes 
986d9eff348SSatish Balay #include "petscblaslapack.h"
9874a2ae208SSatish Balay #undef __FUNCT__
9884a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
989f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
99044cd7ae7SLois Curfman McInnes {
99144cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
99244cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
993f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
994efee365bSSatish Balay   PetscErrorCode ierr;
995d0f46423SBarry Smith   PetscBLASInt   one = 1,nz = PetscBLASIntCast(inA->rmap->n*inA->cmap->N);
99644cd7ae7SLois Curfman McInnes 
9973a40ed3dSBarry Smith   PetscFunctionBegin;
998f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
999efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
10003a40ed3dSBarry Smith   PetscFunctionReturn(0);
100144cd7ae7SLois Curfman McInnes }
100244cd7ae7SLois Curfman McInnes 
10036849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
10048965ea79SLois Curfman McInnes 
10054a2ae208SSatish Balay #undef __FUNCT__
10064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
1007dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
1008273d9f13SBarry Smith {
1009dfbe8321SBarry Smith   PetscErrorCode ierr;
1010273d9f13SBarry Smith 
1011273d9f13SBarry Smith   PetscFunctionBegin;
1012273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1013273d9f13SBarry Smith   PetscFunctionReturn(0);
1014273d9f13SBarry Smith }
1015273d9f13SBarry Smith 
101601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1017eae6fb2eSBarry Smith 
1018eae6fb2eSBarry Smith #undef __FUNCT__
1019eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack"
1020eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F)
1021eae6fb2eSBarry Smith {
1022eae6fb2eSBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
1023eae6fb2eSBarry Smith   PetscErrorCode ierr;
1024d0f46423SBarry Smith   PetscInt       M=A->cmap->N,m=A->rmap->n,rstart;
1025eae6fb2eSBarry Smith   PetscScalar    *array;
1026eae6fb2eSBarry Smith   PetscReal      one = 1.0;
1027eae6fb2eSBarry Smith 
1028eae6fb2eSBarry Smith   PetscFunctionBegin;
10292fbe02b9SBarry Smith   /* Copy A into F->lu->A */
1030eae6fb2eSBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
1031eae6fb2eSBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
1032eae6fb2eSBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
103379b0a62dSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
1034eae6fb2eSBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
1035eae6fb2eSBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
1036eae6fb2eSBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
1037eae6fb2eSBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
1038eae6fb2eSBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
1039eae6fb2eSBarry Smith   lu->rstart = rstart;
1040eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1041eae6fb2eSBarry Smith }
1042eae6fb2eSBarry Smith 
104301b82886SBarry Smith #undef __FUNCT__
10442fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack"
10452fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A)
10462fbe02b9SBarry Smith {
10472fbe02b9SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
10482fbe02b9SBarry Smith   PetscErrorCode ierr;
1049d0f46423SBarry Smith   PetscInt       M=A->cmap->N,m=A->rmap->n,rstart;
10502fbe02b9SBarry Smith   PetscScalar    *array;
10512fbe02b9SBarry Smith   PetscReal      one = 1.0;
10522fbe02b9SBarry Smith 
10532fbe02b9SBarry Smith   PetscFunctionBegin;
10542fbe02b9SBarry Smith   /* Copy F into A->lu->A */
105579b0a62dSBarry Smith   ierr = MatZeroEntries(A);CHKERRQ(ierr);
10562fbe02b9SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
10572fbe02b9SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
10582fbe02b9SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
10592fbe02b9SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
10602fbe02b9SBarry Smith   ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr);
10612fbe02b9SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
10622fbe02b9SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
10632fbe02b9SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
10642fbe02b9SBarry Smith   lu->rstart = rstart;
10652fbe02b9SBarry Smith   PetscFunctionReturn(0);
10662fbe02b9SBarry Smith }
10672fbe02b9SBarry Smith 
10682fbe02b9SBarry Smith #undef __FUNCT__
10692fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense"
10702fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
10712fbe02b9SBarry Smith {
10722fbe02b9SBarry Smith   PetscErrorCode ierr;
10732fbe02b9SBarry Smith   Mat_Plapack    *luA = (Mat_Plapack*)A->spptr;
10742fbe02b9SBarry Smith   Mat_Plapack    *luB = (Mat_Plapack*)B->spptr;
10752fbe02b9SBarry Smith   Mat_Plapack    *luC = (Mat_Plapack*)C->spptr;
10762fbe02b9SBarry Smith   PLA_Obj        alpha = NULL,beta = NULL;
10772fbe02b9SBarry Smith 
10782fbe02b9SBarry Smith   PetscFunctionBegin;
10792fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr);
10802fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr);
10812fbe02b9SBarry Smith 
10826e6f9017SBarry Smith   /*
1083cb2480eaSBarry Smith   ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr);
1084cb2480eaSBarry Smith   ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr);
10856e6f9017SBarry Smith   */
1086cb2480eaSBarry Smith 
10872fbe02b9SBarry Smith   /* do the multiply in PLA  */
108879b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr);
108979b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr);
109079b0a62dSBarry Smith   CHKMEMQ;
10912fbe02b9SBarry Smith 
1092f0e3846dSSatish Balay   ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A); /* CHKERRQ(ierr); */
109379b0a62dSBarry Smith   CHKMEMQ;
10942fbe02b9SBarry Smith   ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr);
10952fbe02b9SBarry Smith   ierr = PLA_Obj_free(&beta);CHKERRQ(ierr);
10962fbe02b9SBarry Smith 
10976e6f9017SBarry Smith   /*
1098cb2480eaSBarry Smith   ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr);
10996e6f9017SBarry Smith   */
11002fbe02b9SBarry Smith   ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr);
11012fbe02b9SBarry Smith   PetscFunctionReturn(0);
11022fbe02b9SBarry Smith }
11032fbe02b9SBarry Smith 
11042fbe02b9SBarry Smith #undef __FUNCT__
11052fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
11062fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
11072fbe02b9SBarry Smith {
11082fbe02b9SBarry Smith   PetscErrorCode ierr;
1109d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
11102fbe02b9SBarry Smith   Mat            Cmat;
11112fbe02b9SBarry Smith 
11122fbe02b9SBarry Smith   PetscFunctionBegin;
1113d0f46423SBarry Smith   if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n);
11146e6f9017SBarry Smith   SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported");
11152fbe02b9SBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr);
1116d0f46423SBarry Smith   ierr = MatSetSizes(Cmat,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr);
11172fbe02b9SBarry Smith   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
11182fbe02b9SBarry Smith   ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11192fbe02b9SBarry Smith   ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
112085bd4cefSHong Zhang 
11212fbe02b9SBarry Smith   *C = Cmat;
11222fbe02b9SBarry Smith   PetscFunctionReturn(0);
11232fbe02b9SBarry Smith }
11242fbe02b9SBarry Smith 
11252fbe02b9SBarry Smith #undef __FUNCT__
11262fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense"
11272fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
11282fbe02b9SBarry Smith {
11292fbe02b9SBarry Smith   PetscErrorCode ierr;
11302fbe02b9SBarry Smith 
11312fbe02b9SBarry Smith   PetscFunctionBegin;
11322fbe02b9SBarry Smith   if (scall == MAT_INITIAL_MATRIX){
11332fbe02b9SBarry Smith     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
11342fbe02b9SBarry Smith   }
11352fbe02b9SBarry Smith   ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
11362fbe02b9SBarry Smith   PetscFunctionReturn(0);
11372fbe02b9SBarry Smith }
11382fbe02b9SBarry Smith 
1139ab235cb6SHong Zhang #undef __FUNCT__
11406c995c7dSHong Zhang #define __FUNCT__ "MatSolve_MPIDense"
11416c995c7dSHong Zhang PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x)
11426c995c7dSHong Zhang {
11436c995c7dSHong Zhang   MPI_Comm       comm = ((PetscObject)A)->comm;
11446c995c7dSHong Zhang   Mat_Plapack    *lu = (Mat_Plapack*)A->spptr;
11456c995c7dSHong Zhang   PetscErrorCode ierr;
1146d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride;
11476c995c7dSHong Zhang   PetscScalar    *array;
11486c995c7dSHong Zhang   PetscReal      one = 1.0;
11496c995c7dSHong Zhang   PetscMPIInt    size,rank,r_rank,r_nproc,c_rank,c_nproc;;
11506c995c7dSHong Zhang   PLA_Obj        v_pla = NULL;
11516c995c7dSHong Zhang   PetscScalar    *loc_buf;
11526c995c7dSHong Zhang   Vec            loc_x;
11536c995c7dSHong Zhang 
11546c995c7dSHong Zhang   PetscFunctionBegin;
11556c995c7dSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
11566c995c7dSHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
11576c995c7dSHong Zhang 
11586c995c7dSHong Zhang   /* Create PLAPACK vector objects, then copy b into PLAPACK b */
11596c995c7dSHong Zhang   PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);
11606c995c7dSHong Zhang   PLA_Obj_set_to_zero(v_pla);
11616c995c7dSHong Zhang 
11626c995c7dSHong Zhang   /* Copy b into rhs_pla */
11636c995c7dSHong Zhang   PLA_API_begin();
11646c995c7dSHong Zhang   PLA_Obj_API_open(v_pla);
11656c995c7dSHong Zhang   ierr = VecGetArray(b,&array);CHKERRQ(ierr);
11666c995c7dSHong Zhang   PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);
11676c995c7dSHong Zhang   ierr = VecRestoreArray(b,&array);CHKERRQ(ierr);
11686c995c7dSHong Zhang   PLA_Obj_API_close(v_pla);
11696c995c7dSHong Zhang   PLA_API_end();
11706c995c7dSHong Zhang 
11716c995c7dSHong Zhang   if (A->factor == MAT_FACTOR_LU){
11726c995c7dSHong Zhang     /* Apply the permutations to the right hand sides */
11736c995c7dSHong Zhang     PLA_Apply_pivots_to_rows (v_pla,lu->pivots);
11746c995c7dSHong Zhang 
11756c995c7dSHong Zhang     /* Solve L y = b, overwriting b with y */
11766c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );
11776c995c7dSHong Zhang 
11786c995c7dSHong Zhang     /* Solve U x = y (=b), overwriting b with x */
11796c995c7dSHong Zhang     PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );
11806c995c7dSHong Zhang   } else { /* MAT_FACTOR_CHOLESKY */
11816c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);
11826c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),
11836c995c7dSHong Zhang                                     PLA_NONUNIT_DIAG,lu->A,v_pla);
11846c995c7dSHong Zhang   }
11856c995c7dSHong Zhang 
11866c995c7dSHong Zhang   /* Copy PLAPACK x into Petsc vector x  */
11876c995c7dSHong Zhang   PLA_Obj_local_length(v_pla, &loc_m);
11886c995c7dSHong Zhang   PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);
11896c995c7dSHong Zhang   PLA_Obj_local_stride(v_pla, &loc_stride);
11906c995c7dSHong Zhang   /*
11916c995c7dSHong Zhang     PetscPrintf(PETSC_COMM_SELF," [%d] b - local_m %d local_stride %d, loc_buf: %g %g, nb: %d\n",rank,loc_m,loc_stride,loc_buf[0],loc_buf[(loc_m-1)*loc_stride],lu->nb);
11926c995c7dSHong Zhang   */
11936c995c7dSHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr);
11946c995c7dSHong Zhang   if (!lu->pla_solved){
11956c995c7dSHong Zhang 
11965d00a290SHong Zhang     PLA_Temp_comm_row_info(lu->templ,&Plapack_comm_2d,&r_rank,&r_nproc);
11975d00a290SHong Zhang     PLA_Temp_comm_col_info(lu->templ,&Plapack_comm_2d,&c_rank,&c_nproc);
11986c995c7dSHong Zhang 
11996c995c7dSHong Zhang     /* Create IS and cts for VecScatterring */
12006c995c7dSHong Zhang     PLA_Obj_local_length(v_pla, &loc_m);
12016c995c7dSHong Zhang     PLA_Obj_local_stride(v_pla, &loc_stride);
12026c995c7dSHong Zhang     ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr);
12036c995c7dSHong Zhang     idx_petsc = idx_pla + loc_m;
12046c995c7dSHong Zhang 
12056c995c7dSHong Zhang     rstart = (r_rank*c_nproc+c_rank)*lu->nb;
12066c995c7dSHong Zhang     for (i=0; i<loc_m; i+=lu->nb){
12076c995c7dSHong Zhang       j = 0;
12086c995c7dSHong Zhang       while (j < lu->nb && i+j < loc_m){
12096c995c7dSHong Zhang         idx_petsc[i+j] = rstart + j; j++;
12106c995c7dSHong Zhang       }
12116c995c7dSHong Zhang       rstart += size*lu->nb;
12126c995c7dSHong Zhang     }
12136c995c7dSHong Zhang 
12146c995c7dSHong Zhang     for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride;
12156c995c7dSHong Zhang 
12166c995c7dSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr);
12176c995c7dSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr);
12186c995c7dSHong Zhang     ierr = PetscFree(idx_pla);CHKERRQ(ierr);
12196c995c7dSHong Zhang     ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr);
12206c995c7dSHong Zhang   }
12216c995c7dSHong Zhang   ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12226c995c7dSHong Zhang   ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12236c995c7dSHong Zhang 
12246c995c7dSHong Zhang   /* Free data */
12256c995c7dSHong Zhang   ierr = VecDestroy(loc_x);CHKERRQ(ierr);
12266c995c7dSHong Zhang   PLA_Obj_free(&v_pla);
12276c995c7dSHong Zhang 
12286c995c7dSHong Zhang   lu->pla_solved = PETSC_TRUE;
12296c995c7dSHong Zhang   PetscFunctionReturn(0);
12306c995c7dSHong Zhang }
12316c995c7dSHong Zhang 
12326c995c7dSHong Zhang #undef __FUNCT__
12336c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorNumeric_MPIDense"
12340481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info)
12356c995c7dSHong Zhang {
1236719d5645SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
12376c995c7dSHong Zhang   PetscErrorCode ierr;
1238d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,rend;
12396c995c7dSHong Zhang   PetscInt       info_pla=0;
12406c995c7dSHong Zhang   PetscScalar    *array,one = 1.0;
12416c995c7dSHong Zhang 
12426c995c7dSHong Zhang   PetscFunctionBegin;
12436c995c7dSHong Zhang   if (lu->mstruct == SAME_NONZERO_PATTERN){
12446c995c7dSHong Zhang     PLA_Obj_free(&lu->A);
12456c995c7dSHong Zhang     PLA_Obj_free (&lu->pivots);
12466c995c7dSHong Zhang   }
12476c995c7dSHong Zhang   /* Create PLAPACK matrix object */
12486c995c7dSHong Zhang   lu->A = NULL; lu->pivots = NULL;
12496c995c7dSHong Zhang   PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);
12506c995c7dSHong Zhang   PLA_Obj_set_to_zero(lu->A);
12516c995c7dSHong Zhang   PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);
12526c995c7dSHong Zhang 
12536c995c7dSHong Zhang   /* Copy A into lu->A */
12546c995c7dSHong Zhang   PLA_API_begin();
12556c995c7dSHong Zhang   PLA_Obj_API_open(lu->A);
12566c995c7dSHong Zhang   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
12576c995c7dSHong Zhang   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
12586c995c7dSHong Zhang   PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);
12596c995c7dSHong Zhang   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
12606c995c7dSHong Zhang   PLA_Obj_API_close(lu->A);
12616c995c7dSHong Zhang   PLA_API_end();
12626c995c7dSHong Zhang 
12636c995c7dSHong Zhang   /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */
12646c995c7dSHong Zhang   info_pla = PLA_LU(lu->A,lu->pivots);
12656c995c7dSHong Zhang   if (info_pla != 0)
12666c995c7dSHong Zhang     SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla);
12676c995c7dSHong Zhang 
12686c995c7dSHong Zhang   lu->rstart         = rstart;
12696c995c7dSHong Zhang   lu->mstruct        = SAME_NONZERO_PATTERN;
1270719d5645SBarry Smith   F->ops->solve      = MatSolve_MPIDense;
1271719d5645SBarry Smith   F->assembled       = PETSC_TRUE;  /* required by -ksp_view */
12726c995c7dSHong Zhang   PetscFunctionReturn(0);
12736c995c7dSHong Zhang }
12746c995c7dSHong Zhang 
12756c995c7dSHong Zhang #undef __FUNCT__
12766c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense"
12770481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info)
12786c995c7dSHong Zhang {
1279719d5645SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)F->spptr;
12806c995c7dSHong Zhang   PetscErrorCode ierr;
1281d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,rend;
12826c995c7dSHong Zhang   PetscInt       info_pla=0;
12836c995c7dSHong Zhang   PetscScalar    *array,one = 1.0;
12846c995c7dSHong Zhang 
12856c995c7dSHong Zhang   PetscFunctionBegin;
12866c995c7dSHong Zhang   if (lu->mstruct == SAME_NONZERO_PATTERN){
12876c995c7dSHong Zhang     PLA_Obj_free(&lu->A);
12886c995c7dSHong Zhang   }
12896c995c7dSHong Zhang   /* Create PLAPACK matrix object */
12906c995c7dSHong Zhang   lu->A      = NULL;
12916c995c7dSHong Zhang   lu->pivots = NULL;
12926c995c7dSHong Zhang   PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);
12936c995c7dSHong Zhang 
12946c995c7dSHong Zhang   /* Copy A into lu->A */
12956c995c7dSHong Zhang   PLA_API_begin();
12966c995c7dSHong Zhang   PLA_Obj_API_open(lu->A);
12976c995c7dSHong Zhang   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
12986c995c7dSHong Zhang   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
12996c995c7dSHong Zhang   PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);
13006c995c7dSHong Zhang   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
13016c995c7dSHong Zhang   PLA_Obj_API_close(lu->A);
13026c995c7dSHong Zhang   PLA_API_end();
13036c995c7dSHong Zhang 
13046c995c7dSHong Zhang   /* Factor P A -> Chol */
13056c995c7dSHong Zhang   info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A);
13066c995c7dSHong Zhang   if (info_pla != 0)
13076c995c7dSHong Zhang     SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla);
13086c995c7dSHong Zhang 
13096c995c7dSHong Zhang   lu->rstart         = rstart;
13106c995c7dSHong Zhang   lu->mstruct        = SAME_NONZERO_PATTERN;
1311719d5645SBarry Smith   F->ops->solve      = MatSolve_MPIDense;
1312719d5645SBarry Smith   F->assembled       = PETSC_TRUE;  /* required by -ksp_view */
13136c995c7dSHong Zhang   PetscFunctionReturn(0);
13146c995c7dSHong Zhang }
13156c995c7dSHong Zhang 
1316b24902e0SBarry Smith /* Note the Petsc perm permutation is ignored */
13172fbe02b9SBarry Smith #undef __FUNCT__
13186c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
13190481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat F,Mat A,IS perm,const MatFactorInfo *info)
132001b82886SBarry Smith {
132101b82886SBarry Smith   PetscErrorCode ierr;
1322b24902e0SBarry Smith   PetscTruth     issymmetric,set;
132301b82886SBarry Smith 
132401b82886SBarry Smith   PetscFunctionBegin;
1325b24902e0SBarry Smith   ierr = MatIsSymmetricKnown(A,&set,&issymmetric);CHKERRQ(ierr);
1326b24902e0SBarry Smith   if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()");
1327719d5645SBarry Smith   F->ops->choleskyfactornumeric  = MatCholeskyFactorNumeric_MPIDense;
1328b24902e0SBarry Smith   PetscFunctionReturn(0);
132901b82886SBarry Smith }
133001b82886SBarry Smith 
1331b24902e0SBarry Smith /* Note the Petsc r and c permutations are ignored */
1332b24902e0SBarry Smith #undef __FUNCT__
13336c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
13340481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
1335b24902e0SBarry Smith {
1336b24902e0SBarry Smith   PetscErrorCode ierr;
1337d0f46423SBarry Smith   PetscInt       M = A->rmap->N;
1338b24902e0SBarry Smith   Mat_Plapack    *lu;
133901b82886SBarry Smith 
1340b24902e0SBarry Smith   PetscFunctionBegin;
1341719d5645SBarry Smith   lu = (Mat_Plapack*)F->spptr;
1342b24902e0SBarry Smith   ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr);
1343719d5645SBarry Smith   F->ops->lufactornumeric  = MatLUFactorNumeric_MPIDense;
134401b82886SBarry Smith   PetscFunctionReturn(0);
134501b82886SBarry Smith }
134601b82886SBarry Smith 
1347b6806ab0SHong Zhang EXTERN_C_BEGIN
134801b82886SBarry Smith #undef __FUNCT__
1349b6806ab0SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_mpidense_plapack"
1350b6806ab0SHong Zhang PetscErrorCode MatFactorGetSolverPackage_mpidense_plapack(Mat A,const MatSolverPackage *type)
1351b6806ab0SHong Zhang {
1352b6806ab0SHong Zhang   PetscFunctionBegin;
1353b6806ab0SHong Zhang   *type = MAT_SOLVER_PLAPACK;
1354b6806ab0SHong Zhang   PetscFunctionReturn(0);
1355b6806ab0SHong Zhang }
1356b6806ab0SHong Zhang EXTERN_C_END
1357b6806ab0SHong Zhang 
1358b6806ab0SHong Zhang #undef __FUNCT__
1359b6806ab0SHong Zhang #define __FUNCT__ "MatGetFactor_mpidense_plapack"
1360b6806ab0SHong Zhang PetscErrorCode MatGetFactor_mpidense_plapack(Mat A,MatFactorType ftype,Mat *F)
136101b82886SBarry Smith {
136201b82886SBarry Smith   PetscErrorCode ierr;
13636c995c7dSHong Zhang   Mat_Plapack    *lu;
13646c995c7dSHong Zhang   PetscMPIInt    size;
136585bd4cefSHong Zhang   PetscInt       M=A->rmap->N;
136601b82886SBarry Smith 
136701b82886SBarry Smith   PetscFunctionBegin;
136801b82886SBarry Smith   /* Create the factorization matrix */
1369eae6fb2eSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr);
1370d0f46423SBarry Smith   ierr = MatSetSizes(*F,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1371eae6fb2eSBarry Smith   ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr);
137285bd4cefSHong Zhang   ierr = PetscNewLog(*F,Mat_Plapack,&lu);CHKERRQ(ierr);
137385bd4cefSHong Zhang   (*F)->spptr = (void*)lu;
137401b82886SBarry Smith 
1375b24902e0SBarry Smith   /* Set default Plapack parameters */
13766c995c7dSHong Zhang   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1377b24902e0SBarry Smith   lu->nb = M/size;
1378b24902e0SBarry Smith   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
137901b82886SBarry Smith 
1380b24902e0SBarry Smith   /* Set runtime options */
1381b24902e0SBarry Smith   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1382b24902e0SBarry Smith     ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
1383b24902e0SBarry Smith   PetscOptionsEnd();
138401b82886SBarry Smith 
1385b24902e0SBarry Smith   /* Create object distribution template */
1386b24902e0SBarry Smith   lu->templ = NULL;
1387b24902e0SBarry Smith   ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr);
1388b24902e0SBarry Smith 
1389b24902e0SBarry Smith   /* Set the datatype */
1390b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX)
1391b24902e0SBarry Smith   lu->datatype = MPI_DOUBLE_COMPLEX;
1392b24902e0SBarry Smith #else
1393b24902e0SBarry Smith   lu->datatype = MPI_DOUBLE;
1394b24902e0SBarry Smith #endif
1395b24902e0SBarry Smith 
1396d0f46423SBarry Smith   ierr = PLA_Matrix_create(lu->datatype,M,A->cmap->N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr);
1397b24902e0SBarry Smith 
1398b24902e0SBarry Smith 
1399b24902e0SBarry Smith   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
14005d00a290SHong Zhang   lu->mstruct        = DIFFERENT_NONZERO_PATTERN;
1401b24902e0SBarry Smith 
1402b24902e0SBarry Smith   if (ftype == MAT_FACTOR_LU) {
1403b24902e0SBarry Smith     (*F)->ops->lufactorsymbolic = MatLUFactorSymbolic_MPIDense;
1404b24902e0SBarry Smith   } else if (ftype == MAT_FACTOR_CHOLESKY) {
14056c995c7dSHong Zhang     (*F)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_MPIDense;
1406b24902e0SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,"No incomplete factorizations for dense matrices");
1407719d5645SBarry Smith   (*F)->factor = ftype;
1408b6806ab0SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)(*F),"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_mpidense_plapack",MatFactorGetSolverPackage_mpidense_plapack);CHKERRQ(ierr);
140901b82886SBarry Smith   PetscFunctionReturn(0);
141001b82886SBarry Smith }
141101b82886SBarry Smith #endif
141201b82886SBarry Smith 
1413488007eeSBarry Smith #undef __FUNCT__
1414488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense"
1415488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
1416488007eeSBarry Smith {
1417488007eeSBarry Smith   PetscErrorCode ierr;
1418488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
1419488007eeSBarry Smith 
1420488007eeSBarry Smith   PetscFunctionBegin;
1421488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
1422488007eeSBarry Smith   PetscFunctionReturn(0);
1423488007eeSBarry Smith }
1424488007eeSBarry Smith 
14258965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
142609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
142709dc0095SBarry Smith        MatGetRow_MPIDense,
142809dc0095SBarry Smith        MatRestoreRow_MPIDense,
142909dc0095SBarry Smith        MatMult_MPIDense,
143097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
14317c922b88SBarry Smith        MatMultTranspose_MPIDense,
14327c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
14338965ea79SLois Curfman McInnes        0,
143409dc0095SBarry Smith        0,
143509dc0095SBarry Smith        0,
143697304618SKris Buschelman /*10*/ 0,
143709dc0095SBarry Smith        0,
143809dc0095SBarry Smith        0,
143909dc0095SBarry Smith        0,
144009dc0095SBarry Smith        MatTranspose_MPIDense,
144197304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
14426e4ee0c6SHong Zhang        MatEqual_MPIDense,
144309dc0095SBarry Smith        MatGetDiagonal_MPIDense,
14445b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
144509dc0095SBarry Smith        MatNorm_MPIDense,
144697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
144709dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
144809dc0095SBarry Smith        0,
144909dc0095SBarry Smith        MatSetOption_MPIDense,
145009dc0095SBarry Smith        MatZeroEntries_MPIDense,
145197304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
1452919b68f7SBarry Smith        0,
145301b82886SBarry Smith        0,
145401b82886SBarry Smith        0,
145501b82886SBarry Smith        0,
145697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1457273d9f13SBarry Smith        0,
145809dc0095SBarry Smith        0,
145909dc0095SBarry Smith        MatGetArray_MPIDense,
146009dc0095SBarry Smith        MatRestoreArray_MPIDense,
146197304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
146209dc0095SBarry Smith        0,
146309dc0095SBarry Smith        0,
146409dc0095SBarry Smith        0,
146509dc0095SBarry Smith        0,
1466488007eeSBarry Smith /*40*/ MatAXPY_MPIDense,
14672ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
146809dc0095SBarry Smith        0,
146909dc0095SBarry Smith        MatGetValues_MPIDense,
147009dc0095SBarry Smith        0,
147197304618SKris Buschelman /*45*/ 0,
147209dc0095SBarry Smith        MatScale_MPIDense,
147309dc0095SBarry Smith        0,
147409dc0095SBarry Smith        0,
147509dc0095SBarry Smith        0,
1476521d7252SBarry Smith /*50*/ 0,
147709dc0095SBarry Smith        0,
147809dc0095SBarry Smith        0,
147909dc0095SBarry Smith        0,
148009dc0095SBarry Smith        0,
148197304618SKris Buschelman /*55*/ 0,
148209dc0095SBarry Smith        0,
148309dc0095SBarry Smith        0,
148409dc0095SBarry Smith        0,
148509dc0095SBarry Smith        0,
148697304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1487b9b97703SBarry Smith        MatDestroy_MPIDense,
1488b9b97703SBarry Smith        MatView_MPIDense,
1489357abbc8SBarry Smith        0,
149097304618SKris Buschelman        0,
149197304618SKris Buschelman /*65*/ 0,
149297304618SKris Buschelman        0,
149397304618SKris Buschelman        0,
149497304618SKris Buschelman        0,
149597304618SKris Buschelman        0,
149697304618SKris Buschelman /*70*/ 0,
149797304618SKris Buschelman        0,
149897304618SKris Buschelman        0,
149997304618SKris Buschelman        0,
150097304618SKris Buschelman        0,
150197304618SKris Buschelman /*75*/ 0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
150497304618SKris Buschelman        0,
150597304618SKris Buschelman        0,
150697304618SKris Buschelman /*80*/ 0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
1510865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1511865e5f61SKris Buschelman        0,
1512865e5f61SKris Buschelman        0,
1513865e5f61SKris Buschelman        0,
1514865e5f61SKris Buschelman        0,
1515865e5f61SKris Buschelman        0,
15162fbe02b9SBarry Smith /*90*/
15172fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15182fbe02b9SBarry Smith        MatMatMult_MPIDense_MPIDense,
15194ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
15202fbe02b9SBarry Smith        MatMatMultNumeric_MPIDense_MPIDense,
15212fbe02b9SBarry Smith #else
1522865e5f61SKris Buschelman        0,
1523865e5f61SKris Buschelman        0,
1524865e5f61SKris Buschelman        0,
15252fbe02b9SBarry Smith #endif
15262fbe02b9SBarry Smith        0,
1527865e5f61SKris Buschelman /*95*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0};
15318965ea79SLois Curfman McInnes 
1532273d9f13SBarry Smith EXTERN_C_BEGIN
15334a2ae208SSatish Balay #undef __FUNCT__
1534a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1535be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1536a23d5eceSKris Buschelman {
1537a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1538dfbe8321SBarry Smith   PetscErrorCode ierr;
1539a23d5eceSKris Buschelman 
1540a23d5eceSKris Buschelman   PetscFunctionBegin;
1541a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1542a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1543a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1544a23d5eceSKris Buschelman 
1545a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1546f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1547d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
15485c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
15495c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
155052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1551a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1552a23d5eceSKris Buschelman }
1553a23d5eceSKris Buschelman EXTERN_C_END
1554a23d5eceSKris Buschelman 
15550bad9183SKris Buschelman /*MC
155641c8de11SBarry Smith    MAT_SOLVER_PLAPACK = "mpidense" - Parallel LU and Cholesky factorization for MATMPIDENSE matrices
15570bad9183SKris Buschelman 
155841c8de11SBarry Smith   run config/configure.py with the option --download-plapack
15597878bbefSBarry Smith 
15607878bbefSBarry Smith 
15617878bbefSBarry Smith   Options Database Keys:
15627878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition
15637878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition
15647878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector
15657878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size
15667878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag
15677878bbefSBarry Smith 
156841c8de11SBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE, PCFactorSetSolverPackage(), MatSolverPackage
156941c8de11SBarry Smith 
15700bad9183SKris Buschelman M*/
15710bad9183SKris Buschelman 
1572a23d5eceSKris Buschelman EXTERN_C_BEGIN
1573a23d5eceSKris Buschelman #undef __FUNCT__
15744a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1575be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1576273d9f13SBarry Smith {
1577273d9f13SBarry Smith   Mat_MPIDense   *a;
1578dfbe8321SBarry Smith   PetscErrorCode ierr;
1579273d9f13SBarry Smith 
1580273d9f13SBarry Smith   PetscFunctionBegin;
158138f2d2fdSLisandro Dalcin   ierr              = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr);
1582b0a32e0cSBarry Smith   mat->data         = (void*)a;
1583273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1584273d9f13SBarry Smith   mat->mapping      = 0;
1585273d9f13SBarry Smith 
1586273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
15877adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr);
15887adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr);
1589273d9f13SBarry Smith 
15907408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(mat->rmap,1);CHKERRQ(ierr);
15917408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(mat->cmap,1);CHKERRQ(ierr);
1592d0f46423SBarry Smith   ierr = PetscMapSetUp(mat->rmap);CHKERRQ(ierr);
1593d0f46423SBarry Smith   ierr = PetscMapSetUp(mat->cmap);CHKERRQ(ierr);
1594d0f46423SBarry Smith   a->nvec = mat->cmap->n;
1595273d9f13SBarry Smith 
1596273d9f13SBarry Smith   /* build cache for off array entries formed */
1597273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
15987adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr);
1599273d9f13SBarry Smith 
1600273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1601273d9f13SBarry Smith   a->lvec        = 0;
1602273d9f13SBarry Smith   a->Mvctx       = 0;
1603273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1604273d9f13SBarry Smith 
1605273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1606273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1607273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1608a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1609a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1610a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
16114ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
16124ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
16134ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
16144ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
16154ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
16164ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
16174ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
16184ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
16194ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
16207878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1621b6806ab0SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetFactor_mpidense_plapack_C",
1622b6806ab0SHong Zhang                                      "MatGetFactor_mpidense_plapack",
1623b6806ab0SHong Zhang                                       MatGetFactor_mpidense_plapack);CHKERRQ(ierr);
1624db4efbfdSBarry Smith   ierr = PetscPLAPACKInitializePackage(((PetscObject)mat)->comm);CHKERRQ(ierr);
1625db4efbfdSBarry Smith #endif
162638aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
162701b82886SBarry Smith 
1628273d9f13SBarry Smith   PetscFunctionReturn(0);
1629273d9f13SBarry Smith }
1630273d9f13SBarry Smith EXTERN_C_END
1631273d9f13SBarry Smith 
1632209238afSKris Buschelman /*MC
1633002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1634209238afSKris Buschelman 
1635209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1636209238afSKris Buschelman    and MATMPIDENSE otherwise.
1637209238afSKris Buschelman 
1638209238afSKris Buschelman    Options Database Keys:
1639209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1640209238afSKris Buschelman 
1641209238afSKris Buschelman   Level: beginner
1642209238afSKris Buschelman 
164301b82886SBarry Smith 
1644209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1645209238afSKris Buschelman M*/
1646209238afSKris Buschelman 
1647209238afSKris Buschelman EXTERN_C_BEGIN
1648209238afSKris Buschelman #undef __FUNCT__
1649209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1650be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1651dfbe8321SBarry Smith {
16526849ba73SBarry Smith   PetscErrorCode ierr;
165313f74950SBarry Smith   PetscMPIInt    size;
1654209238afSKris Buschelman 
1655209238afSKris Buschelman   PetscFunctionBegin;
16567adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1657209238afSKris Buschelman   if (size == 1) {
1658209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1659209238afSKris Buschelman   } else {
1660209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1661209238afSKris Buschelman   }
1662209238afSKris Buschelman   PetscFunctionReturn(0);
1663209238afSKris Buschelman }
1664209238afSKris Buschelman EXTERN_C_END
1665209238afSKris Buschelman 
16664a2ae208SSatish Balay #undef __FUNCT__
16674a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1668273d9f13SBarry Smith /*@C
1669273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1670273d9f13SBarry Smith 
1671273d9f13SBarry Smith    Not collective
1672273d9f13SBarry Smith 
1673273d9f13SBarry Smith    Input Parameters:
1674273d9f13SBarry Smith .  A - the matrix
1675273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1676273d9f13SBarry Smith    to control all matrix memory allocation.
1677273d9f13SBarry Smith 
1678273d9f13SBarry Smith    Notes:
1679273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1680273d9f13SBarry Smith    storage by columns.
1681273d9f13SBarry Smith 
1682273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1683273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1684273d9f13SBarry Smith    set data=PETSC_NULL.
1685273d9f13SBarry Smith 
1686273d9f13SBarry Smith    Level: intermediate
1687273d9f13SBarry Smith 
1688273d9f13SBarry Smith .keywords: matrix,dense, parallel
1689273d9f13SBarry Smith 
1690273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1691273d9f13SBarry Smith @*/
1692be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1693273d9f13SBarry Smith {
1694dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1695273d9f13SBarry Smith 
1696273d9f13SBarry Smith   PetscFunctionBegin;
1697565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1698a23d5eceSKris Buschelman   if (f) {
1699a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1700a23d5eceSKris Buschelman   }
1701273d9f13SBarry Smith   PetscFunctionReturn(0);
1702273d9f13SBarry Smith }
1703273d9f13SBarry Smith 
17044a2ae208SSatish Balay #undef __FUNCT__
17054a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
17068965ea79SLois Curfman McInnes /*@C
170739ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
17088965ea79SLois Curfman McInnes 
1709db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1710db81eaa0SLois Curfman McInnes 
17118965ea79SLois Curfman McInnes    Input Parameters:
1712db81eaa0SLois Curfman McInnes +  comm - MPI communicator
17138965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1714db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
17158965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1716db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
17177f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1718dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
17198965ea79SLois Curfman McInnes 
17208965ea79SLois Curfman McInnes    Output Parameter:
1721477f1c0bSLois Curfman McInnes .  A - the matrix
17228965ea79SLois Curfman McInnes 
1723b259b22eSLois Curfman McInnes    Notes:
172439ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
172539ddd567SLois Curfman McInnes    storage by columns.
17268965ea79SLois Curfman McInnes 
172718f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
172818f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
17297f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
173018f449edSLois Curfman McInnes 
17318965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
17328965ea79SLois Curfman McInnes    (possibly both).
17338965ea79SLois Curfman McInnes 
1734027ccd11SLois Curfman McInnes    Level: intermediate
1735027ccd11SLois Curfman McInnes 
173639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
17378965ea79SLois Curfman McInnes 
173839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
17398965ea79SLois Curfman McInnes @*/
1740be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
17418965ea79SLois Curfman McInnes {
17426849ba73SBarry Smith   PetscErrorCode ierr;
174313f74950SBarry Smith   PetscMPIInt    size;
17448965ea79SLois Curfman McInnes 
17453a40ed3dSBarry Smith   PetscFunctionBegin;
1746f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1747f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1748273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1749273d9f13SBarry Smith   if (size > 1) {
1750273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1751273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1752273d9f13SBarry Smith   } else {
1753273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1754273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
17558c469469SLois Curfman McInnes   }
17563a40ed3dSBarry Smith   PetscFunctionReturn(0);
17578965ea79SLois Curfman McInnes }
17588965ea79SLois Curfman McInnes 
17594a2ae208SSatish Balay #undef __FUNCT__
17604a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
17616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
17628965ea79SLois Curfman McInnes {
17638965ea79SLois Curfman McInnes   Mat            mat;
17643501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1765dfbe8321SBarry Smith   PetscErrorCode ierr;
17668965ea79SLois Curfman McInnes 
17673a40ed3dSBarry Smith   PetscFunctionBegin;
17688965ea79SLois Curfman McInnes   *newmat       = 0;
17697adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr);
1770d0f46423SBarry Smith   ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
17717adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1772834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1773e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
17743501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1775c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1776273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
17778965ea79SLois Curfman McInnes 
1778d0f46423SBarry Smith   mat->rmap->rstart     = A->rmap->rstart;
1779d0f46423SBarry Smith   mat->rmap->rend       = A->rmap->rend;
17808965ea79SLois Curfman McInnes   a->size              = oldmat->size;
17818965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1782e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1783b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
17843782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1785e04c1aa4SHong Zhang 
1786d0f46423SBarry Smith   ierr = PetscMemcpy(mat->rmap->range,A->rmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1787d0f46423SBarry Smith   ierr = PetscMemcpy(mat->cmap->range,A->cmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
17887adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr);
17898965ea79SLois Curfman McInnes 
1790329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
17915609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
179252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
179301b82886SBarry Smith 
17948965ea79SLois Curfman McInnes   *newmat = mat;
17953a40ed3dSBarry Smith   PetscFunctionReturn(0);
17968965ea79SLois Curfman McInnes }
17978965ea79SLois Curfman McInnes 
1798e090d566SSatish Balay #include "petscsys.h"
17998965ea79SLois Curfman McInnes 
18004a2ae208SSatish Balay #undef __FUNCT__
18014a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1802a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, const MatType type,Mat *newmat)
180390ace30eSBarry Smith {
18046849ba73SBarry Smith   PetscErrorCode ierr;
180532dcc486SBarry Smith   PetscMPIInt    rank,size;
180613f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
180787828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
180890ace30eSBarry Smith   MPI_Status     status;
180990ace30eSBarry Smith 
18103a40ed3dSBarry Smith   PetscFunctionBegin;
1811d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1812d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
181390ace30eSBarry Smith 
181490ace30eSBarry Smith   /* determine ownership of all rows */
181590ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
181613f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
181713f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
181890ace30eSBarry Smith   rowners[0] = 0;
181990ace30eSBarry Smith   for (i=2; i<=size; i++) {
182090ace30eSBarry Smith     rowners[i] += rowners[i-1];
182190ace30eSBarry Smith   }
182290ace30eSBarry Smith 
1823f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1824f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1825be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1826878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
182790ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
182890ace30eSBarry Smith 
182990ace30eSBarry Smith   if (!rank) {
183087828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
183190ace30eSBarry Smith 
183290ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
18330752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
183490ace30eSBarry Smith 
183590ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
183690ace30eSBarry Smith     vals_ptr = vals;
183790ace30eSBarry Smith     for (i=0; i<m; i++) {
183890ace30eSBarry Smith       for (j=0; j<N; j++) {
183990ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
184090ace30eSBarry Smith       }
184190ace30eSBarry Smith     }
184290ace30eSBarry Smith 
184390ace30eSBarry Smith     /* read in other processors and ship out */
184490ace30eSBarry Smith     for (i=1; i<size; i++) {
184590ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
18460752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
18477adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr);
184890ace30eSBarry Smith     }
18493a40ed3dSBarry Smith   } else {
185090ace30eSBarry Smith     /* receive numeric values */
185187828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
185290ace30eSBarry Smith 
185390ace30eSBarry Smith     /* receive message of values*/
18547adad957SLisandro Dalcin     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr);
185590ace30eSBarry Smith 
185690ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
185790ace30eSBarry Smith     vals_ptr = vals;
185890ace30eSBarry Smith     for (i=0; i<m; i++) {
185990ace30eSBarry Smith       for (j=0; j<N; j++) {
186090ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
186190ace30eSBarry Smith       }
186290ace30eSBarry Smith     }
186390ace30eSBarry Smith   }
1864606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1865606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
18666d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18676d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18683a40ed3dSBarry Smith   PetscFunctionReturn(0);
186990ace30eSBarry Smith }
187090ace30eSBarry Smith 
18714a2ae208SSatish Balay #undef __FUNCT__
18724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1873a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense(PetscViewer viewer,const MatType type,Mat *newmat)
18748965ea79SLois Curfman McInnes {
18758965ea79SLois Curfman McInnes   Mat            A;
187687828ca2SBarry Smith   PetscScalar    *vals,*svals;
187719bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
18788965ea79SLois Curfman McInnes   MPI_Status     status;
187913f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
188013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
188113f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
188213f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
188313f74950SBarry Smith   int            fd;
18846849ba73SBarry Smith   PetscErrorCode ierr;
18858965ea79SLois Curfman McInnes 
18863a40ed3dSBarry Smith   PetscFunctionBegin;
1887d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1888d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18898965ea79SLois Curfman McInnes   if (!rank) {
1890b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
18910752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1892552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
18938965ea79SLois Curfman McInnes   }
18948965ea79SLois Curfman McInnes 
189513f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
189690ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
189790ace30eSBarry Smith 
189890ace30eSBarry Smith   /*
189990ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
190090ace30eSBarry Smith   */
190190ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1902be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
19033a40ed3dSBarry Smith     PetscFunctionReturn(0);
190490ace30eSBarry Smith   }
190590ace30eSBarry Smith 
19068965ea79SLois Curfman McInnes   /* determine ownership of all rows */
1907e44c0bd4SBarry Smith   m          = PetscMPIIntCast(M/size + ((M % size) > rank));
1908e44c0bd4SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
1909ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
19108965ea79SLois Curfman McInnes   rowners[0] = 0;
19118965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
19128965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
19138965ea79SLois Curfman McInnes   }
19148965ea79SLois Curfman McInnes   rstart = rowners[rank];
19158965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
19168965ea79SLois Curfman McInnes 
19178965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
191813f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
19198965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
19208965ea79SLois Curfman McInnes   if (!rank) {
192113f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
19220752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
192313f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
19248965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
19251466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1926606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1927ca161407SBarry Smith   } else {
19281466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
19298965ea79SLois Curfman McInnes   }
19308965ea79SLois Curfman McInnes 
19318965ea79SLois Curfman McInnes   if (!rank) {
19328965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
193313f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
193413f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
19358965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19368965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
19378965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
19388965ea79SLois Curfman McInnes       }
19398965ea79SLois Curfman McInnes     }
1940606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
19418965ea79SLois Curfman McInnes 
19428965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
19438965ea79SLois Curfman McInnes     maxnz = 0;
19448965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19450452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
19468965ea79SLois Curfman McInnes     }
194713f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
19488965ea79SLois Curfman McInnes 
19498965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
19508965ea79SLois Curfman McInnes     nz = procsnz[0];
195113f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19520752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
19538965ea79SLois Curfman McInnes 
19548965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
19558965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19568965ea79SLois Curfman McInnes       nz   = procsnz[i];
19570752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
195813f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
19598965ea79SLois Curfman McInnes     }
1960606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
19613a40ed3dSBarry Smith   } else {
19628965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
19638965ea79SLois Curfman McInnes     nz = 0;
19648965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19658965ea79SLois Curfman McInnes       nz += ourlens[i];
19668965ea79SLois Curfman McInnes     }
196713f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19688965ea79SLois Curfman McInnes 
19698965ea79SLois Curfman McInnes     /* receive message of column indices*/
197013f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
197113f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
197229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
19738965ea79SLois Curfman McInnes   }
19748965ea79SLois Curfman McInnes 
19758965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
197613f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
19778965ea79SLois Curfman McInnes   jj = 0;
19788965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19798965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
19808965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
19818965ea79SLois Curfman McInnes       jj++;
19828965ea79SLois Curfman McInnes     }
19838965ea79SLois Curfman McInnes   }
19848965ea79SLois Curfman McInnes 
19858965ea79SLois Curfman McInnes   /* create our matrix */
19868965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19878965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
19888965ea79SLois Curfman McInnes   }
1989f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1990f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1991be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1992878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
19938965ea79SLois Curfman McInnes   A = *newmat;
19948965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19958965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
19968965ea79SLois Curfman McInnes   }
19978965ea79SLois Curfman McInnes 
19988965ea79SLois Curfman McInnes   if (!rank) {
199987828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
20008965ea79SLois Curfman McInnes 
20018965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
20028965ea79SLois Curfman McInnes     nz = procsnz[0];
20030752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
20048965ea79SLois Curfman McInnes 
20058965ea79SLois Curfman McInnes     /* insert into matrix */
20068965ea79SLois Curfman McInnes     jj      = rstart;
20078965ea79SLois Curfman McInnes     smycols = mycols;
20088965ea79SLois Curfman McInnes     svals   = vals;
20098965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20108965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20118965ea79SLois Curfman McInnes       smycols += ourlens[i];
20128965ea79SLois Curfman McInnes       svals   += ourlens[i];
20138965ea79SLois Curfman McInnes       jj++;
20148965ea79SLois Curfman McInnes     }
20158965ea79SLois Curfman McInnes 
20168965ea79SLois Curfman McInnes     /* read in other processors and ship out */
20178965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
20188965ea79SLois Curfman McInnes       nz   = procsnz[i];
20190752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
20207adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
20218965ea79SLois Curfman McInnes     }
2022606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
20233a40ed3dSBarry Smith   } else {
20248965ea79SLois Curfman McInnes     /* receive numeric values */
202584d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
20268965ea79SLois Curfman McInnes 
20278965ea79SLois Curfman McInnes     /* receive message of values*/
20287adad957SLisandro Dalcin     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2029ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
203029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
20318965ea79SLois Curfman McInnes 
20328965ea79SLois Curfman McInnes     /* insert into matrix */
20338965ea79SLois Curfman McInnes     jj      = rstart;
20348965ea79SLois Curfman McInnes     smycols = mycols;
20358965ea79SLois Curfman McInnes     svals   = vals;
20368965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20378965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20388965ea79SLois Curfman McInnes       smycols += ourlens[i];
20398965ea79SLois Curfman McInnes       svals   += ourlens[i];
20408965ea79SLois Curfman McInnes       jj++;
20418965ea79SLois Curfman McInnes     }
20428965ea79SLois Curfman McInnes   }
2043606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
2044606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2045606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2046606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
20478965ea79SLois Curfman McInnes 
20486d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20496d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20503a40ed3dSBarry Smith   PetscFunctionReturn(0);
20518965ea79SLois Curfman McInnes }
205290ace30eSBarry Smith 
20536e4ee0c6SHong Zhang #undef __FUNCT__
20546e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
20556e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
20566e4ee0c6SHong Zhang {
20576e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
20586e4ee0c6SHong Zhang   Mat            a,b;
20596e4ee0c6SHong Zhang   PetscTruth     flg;
20606e4ee0c6SHong Zhang   PetscErrorCode ierr;
206190ace30eSBarry Smith 
20626e4ee0c6SHong Zhang   PetscFunctionBegin;
20636e4ee0c6SHong Zhang   a = matA->A;
20646e4ee0c6SHong Zhang   b = matB->A;
20656e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
20667adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
20676e4ee0c6SHong Zhang   PetscFunctionReturn(0);
20686e4ee0c6SHong Zhang }
206990ace30eSBarry Smith 
207009d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
207109d27a7eSBarry Smith 
207209d27a7eSBarry Smith #undef __FUNCT__
207309d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage"
207409d27a7eSBarry Smith /*@C
207509d27a7eSBarry Smith   PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK.
207609d27a7eSBarry Smith   Level: developer
207709d27a7eSBarry Smith 
207809d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK
207909d27a7eSBarry Smith .seealso: PetscFinalize()
208009d27a7eSBarry Smith @*/
208109d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void)
208209d27a7eSBarry Smith {
208309d27a7eSBarry Smith   PetscErrorCode ierr;
208409d27a7eSBarry Smith 
208509d27a7eSBarry Smith   PetscFunctionBegin;
208609d27a7eSBarry Smith   ierr = PLA_Finalize();CHKERRQ(ierr);
208709d27a7eSBarry Smith   PetscFunctionReturn(0);
208809d27a7eSBarry Smith }
208909d27a7eSBarry Smith 
209009d27a7eSBarry Smith #undef __FUNCT__
209109d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage"
209209d27a7eSBarry Smith /*@C
209309d27a7eSBarry Smith   PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is
2094db4efbfdSBarry Smith   called from MatCreate_MPIDense() the first time an MPI dense matrix is called.
209509d27a7eSBarry Smith 
209609d27a7eSBarry Smith   Input Parameter:
2097db4efbfdSBarry Smith .   comm - the communicator the matrix lives on
209809d27a7eSBarry Smith 
209909d27a7eSBarry Smith   Level: developer
210009d27a7eSBarry Smith 
2101db4efbfdSBarry Smith    Notes: PLAPACK does not have a good fit with MPI communicators; all (parallel) PLAPACK objects have to live in the
2102db4efbfdSBarry Smith   same communicator (because there is some global state that is initialized and used for all matrices). In addition if
2103db4efbfdSBarry Smith   PLAPACK is initialized (that is the initial matrices created) are on subcommunicators of MPI_COMM_WORLD, these subcommunicators
2104db4efbfdSBarry Smith   cannot overlap.
2105db4efbfdSBarry Smith 
210609d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK
210709d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize()
210809d27a7eSBarry Smith @*/
2109db4efbfdSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(MPI_Comm comm)
211009d27a7eSBarry Smith {
2111eae6fb2eSBarry Smith   PetscMPIInt    size;
211209d27a7eSBarry Smith   PetscErrorCode ierr;
211309d27a7eSBarry Smith 
211409d27a7eSBarry Smith   PetscFunctionBegin;
211509d27a7eSBarry Smith   if (!PLA_Initialized(PETSC_NULL)) {
211609d27a7eSBarry Smith 
211709d27a7eSBarry Smith     ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
211804fea9ffSBarry Smith     Plapack_nprows = 1;
211904fea9ffSBarry Smith     Plapack_npcols = size;
212009d27a7eSBarry Smith 
2121aeccfd6fSBarry Smith     ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr);
21225d00a290SHong Zhang       ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr);
21235d00a290SHong Zhang       ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr);
212479b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG)
212579b0a62dSBarry Smith       Plapack_ierror = 3;
212679b0a62dSBarry Smith #else
212779b0a62dSBarry Smith       Plapack_ierror = 0;
212879b0a62dSBarry Smith #endif
21295d00a290SHong Zhang       ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr);
2130eae6fb2eSBarry Smith       if (Plapack_ierror){
2131eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr);
2132aeccfd6fSBarry Smith       } else {
2133eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr);
2134aeccfd6fSBarry Smith       }
2135aeccfd6fSBarry Smith 
2136eae6fb2eSBarry Smith       Plapack_nb_alg = 0;
21375d00a290SHong Zhang       ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr);
2138eae6fb2eSBarry Smith       if (Plapack_nb_alg) {
2139eae6fb2eSBarry Smith         ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr);
2140aeccfd6fSBarry Smith       }
2141aeccfd6fSBarry Smith     PetscOptionsEnd();
2142aeccfd6fSBarry Smith 
214304fea9ffSBarry Smith     ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr);
214404fea9ffSBarry Smith     ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr);
214509d27a7eSBarry Smith     ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr);
214609d27a7eSBarry Smith   }
214709d27a7eSBarry Smith   PetscFunctionReturn(0);
214809d27a7eSBarry Smith }
214990ace30eSBarry Smith 
215009d27a7eSBarry Smith #endif
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