1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 704fea9ffSBarry Smith 87c4f633dSBarry Smith #include "../src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg; 11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d; 12eae6fb2eSBarry Smith #endif 138965ea79SLois Curfman McInnes 14ba8c8a56SBarry Smith #undef __FUNCT__ 15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 16ab92ecdeSBarry Smith /*@ 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 19ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Input Parameter: 22ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 23ab92ecdeSBarry Smith 24ab92ecdeSBarry Smith Output Parameter: 25ab92ecdeSBarry Smith . B - the inner matrix 26ab92ecdeSBarry Smith 278e6c10adSSatish Balay Level: intermediate 288e6c10adSSatish Balay 29ab92ecdeSBarry Smith @*/ 30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 31ab92ecdeSBarry Smith { 32ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 33ab92ecdeSBarry Smith PetscErrorCode ierr; 34ab92ecdeSBarry Smith PetscTruth flg; 35ab92ecdeSBarry Smith 36ab92ecdeSBarry Smith PetscFunctionBegin; 37ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 38ab92ecdeSBarry Smith if (flg) { 39ab92ecdeSBarry Smith *B = mat->A; 40ab92ecdeSBarry Smith } else { 41ab92ecdeSBarry Smith *B = A; 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith PetscFunctionReturn(0); 44ab92ecdeSBarry Smith } 45ab92ecdeSBarry Smith 46ab92ecdeSBarry Smith #undef __FUNCT__ 47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 49ba8c8a56SBarry Smith { 50ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 51ba8c8a56SBarry Smith PetscErrorCode ierr; 52d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 56ba8c8a56SBarry Smith lrow = row - rstart; 57ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith #undef __FUNCT__ 62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 64ba8c8a56SBarry Smith { 65ba8c8a56SBarry Smith PetscErrorCode ierr; 66ba8c8a56SBarry Smith 67ba8c8a56SBarry Smith PetscFunctionBegin; 68ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 69ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 70ba8c8a56SBarry Smith PetscFunctionReturn(0); 71ba8c8a56SBarry Smith } 72ba8c8a56SBarry Smith 730de54da6SSatish Balay EXTERN_C_BEGIN 744a2ae208SSatish Balay #undef __FUNCT__ 754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8187828ca2SBarry Smith PetscScalar *array; 820de54da6SSatish Balay MPI_Comm comm; 830de54da6SSatish Balay 840de54da6SSatish Balay PetscFunctionBegin; 85d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 860de54da6SSatish Balay 870de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 880de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 890de54da6SSatish Balay 900de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 910de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 92f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 93f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 947adad957SLisandro Dalcin ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 955c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 960de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 970de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 990de54da6SSatish Balay 1000de54da6SSatish Balay *iscopy = PETSC_TRUE; 1010de54da6SSatish Balay PetscFunctionReturn(0); 1020de54da6SSatish Balay } 1030de54da6SSatish Balay EXTERN_C_END 1040de54da6SSatish Balay 1054a2ae208SSatish Balay #undef __FUNCT__ 1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1088965ea79SLois Curfman McInnes { 10939b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110dfbe8321SBarry Smith PetscErrorCode ierr; 111d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 112273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1138965ea79SLois Curfman McInnes 1143a40ed3dSBarry Smith PetscFunctionBegin; 1158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1165ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 117d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1188965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1198965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12039b7565bSBarry Smith if (roworiented) { 12139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1223a40ed3dSBarry Smith } else { 1238965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1245ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 125d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12739b7565bSBarry Smith } 1288965ea79SLois Curfman McInnes } 1293a40ed3dSBarry Smith } else { 1303782ba37SSatish Balay if (!A->donotstash) { 13139b7565bSBarry Smith if (roworiented) { 1328798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 133d36fbae8SSatish Balay } else { 1348798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 13539b7565bSBarry Smith } 136b49de8d1SLois Curfman McInnes } 137b49de8d1SLois Curfman McInnes } 1383782ba37SSatish Balay } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 1424a2ae208SSatish Balay #undef __FUNCT__ 1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 145b49de8d1SLois Curfman McInnes { 146b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 147dfbe8321SBarry Smith PetscErrorCode ierr; 148d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 149b49de8d1SLois Curfman McInnes 1503a40ed3dSBarry Smith PetscFunctionBegin; 151b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 15297e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 153d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 154b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 155b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 156b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15797e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 158d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) { 15929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 160a8c6a408SBarry Smith } 161b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 162b49de8d1SLois Curfman McInnes } 163a8c6a408SBarry Smith } else { 16429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1658965ea79SLois Curfman McInnes } 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 173ff14e315SSatish Balay { 174ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 175dfbe8321SBarry Smith PetscErrorCode ierr; 176ff14e315SSatish Balay 1773a40ed3dSBarry Smith PetscFunctionBegin; 178ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1793a40ed3dSBarry Smith PetscFunctionReturn(0); 180ff14e315SSatish Balay } 181ff14e315SSatish Balay 1824a2ae208SSatish Balay #undef __FUNCT__ 1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 185ca3fa75bSLois Curfman McInnes { 186ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 187ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1886849ba73SBarry Smith PetscErrorCode ierr; 1895d0c19d7SBarry Smith PetscInt i,j,rstart,rend,nrows,ncols,nlrows,nlcols; 1905d0c19d7SBarry Smith const PetscInt *irow,*icol; 19187828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 192ca3fa75bSLois Curfman McInnes Mat newmat; 193ca3fa75bSLois Curfman McInnes 194ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 195ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 196ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 197b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 198b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 199ca3fa75bSLois Curfman McInnes 200ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2017eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2027eba5e9cSLois Curfman McInnes original matrix! */ 203ca3fa75bSLois Curfman McInnes 204ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2057eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 206ca3fa75bSLois Curfman McInnes 207ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 208ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 20929bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2107eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 211ca3fa75bSLois Curfman McInnes newmat = *B; 212ca3fa75bSLois Curfman McInnes } else { 213ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2147adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 215f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 2167adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 217878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 218ca3fa75bSLois Curfman McInnes } 219ca3fa75bSLois Curfman McInnes 220ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 221ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 222ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 223ca3fa75bSLois Curfman McInnes 224ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 22525a33276SHong Zhang av = v + ((Mat_SeqDense *)mat->A->data)->lda*icol[i]; 226ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2277eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 228ca3fa75bSLois Curfman McInnes } 229ca3fa75bSLois Curfman McInnes } 230ca3fa75bSLois Curfman McInnes 231ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 232ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 234ca3fa75bSLois Curfman McInnes 235ca3fa75bSLois Curfman McInnes /* Free work space */ 236ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 237ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 238ca3fa75bSLois Curfman McInnes *B = newmat; 239ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 240ca3fa75bSLois Curfman McInnes } 241ca3fa75bSLois Curfman McInnes 2424a2ae208SSatish Balay #undef __FUNCT__ 2434a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 244dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 245ff14e315SSatish Balay { 2463a40ed3dSBarry Smith PetscFunctionBegin; 2473a40ed3dSBarry Smith PetscFunctionReturn(0); 248ff14e315SSatish Balay } 249ff14e315SSatish Balay 2504a2ae208SSatish Balay #undef __FUNCT__ 2514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 252dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2538965ea79SLois Curfman McInnes { 25439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2557adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mat)->comm; 256dfbe8321SBarry Smith PetscErrorCode ierr; 25713f74950SBarry Smith PetscInt nstash,reallocs; 2588965ea79SLois Curfman McInnes InsertMode addv; 2598965ea79SLois Curfman McInnes 2603a40ed3dSBarry Smith PetscFunctionBegin; 2618965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 262ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2637056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 26429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2658965ea79SLois Curfman McInnes } 266e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2678965ea79SLois Curfman McInnes 268d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2698798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 270ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 2728965ea79SLois Curfman McInnes } 2738965ea79SLois Curfman McInnes 2744a2ae208SSatish Balay #undef __FUNCT__ 2754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 276dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2778965ea79SLois Curfman McInnes { 27839ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2796849ba73SBarry Smith PetscErrorCode ierr; 28013f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 28113f74950SBarry Smith PetscMPIInt n; 28287828ca2SBarry Smith PetscScalar *val; 283e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2848965ea79SLois Curfman McInnes 2853a40ed3dSBarry Smith PetscFunctionBegin; 2868965ea79SLois Curfman McInnes /* wait on receives */ 2877ef1d9bdSSatish Balay while (1) { 2888798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2897ef1d9bdSSatish Balay if (!flg) break; 2908965ea79SLois Curfman McInnes 2917ef1d9bdSSatish Balay for (i=0; i<n;) { 2927ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2937ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2947ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2957ef1d9bdSSatish Balay else ncols = n-i; 2967ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2977ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2987ef1d9bdSSatish Balay i = j; 2998965ea79SLois Curfman McInnes } 3007ef1d9bdSSatish Balay } 3018798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 30339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes 3066d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3088965ea79SLois Curfman McInnes } 3093a40ed3dSBarry Smith PetscFunctionReturn(0); 3108965ea79SLois Curfman McInnes } 3118965ea79SLois Curfman McInnes 3124a2ae208SSatish Balay #undef __FUNCT__ 3134a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 314dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3158965ea79SLois Curfman McInnes { 316dfbe8321SBarry Smith PetscErrorCode ierr; 31739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3183a40ed3dSBarry Smith 3193a40ed3dSBarry Smith PetscFunctionBegin; 3203a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3213a40ed3dSBarry Smith PetscFunctionReturn(0); 3228965ea79SLois Curfman McInnes } 3238965ea79SLois Curfman McInnes 3248965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3258965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3268965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3273501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3288965ea79SLois Curfman McInnes routine. 3298965ea79SLois Curfman McInnes */ 3304a2ae208SSatish Balay #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 332f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3338965ea79SLois Curfman McInnes { 33439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3356849ba73SBarry Smith PetscErrorCode ierr; 336d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33713f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 33813f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3397adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 34013f74950SBarry Smith PetscInt *lens,*lrows,*values; 34113f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3427adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 3438965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3448965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 34535d8aa7fSBarry Smith PetscTruth found; 3468965ea79SLois Curfman McInnes 3473a40ed3dSBarry Smith PetscFunctionBegin; 3488965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 34913f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 35013f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 35113f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3528965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3538965ea79SLois Curfman McInnes idx = rows[i]; 35435d8aa7fSBarry Smith found = PETSC_FALSE; 3558965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3568965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 357c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3588965ea79SLois Curfman McInnes } 3598965ea79SLois Curfman McInnes } 36029bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3618965ea79SLois Curfman McInnes } 362c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3638965ea79SLois Curfman McInnes 3648965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 365c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3668965ea79SLois Curfman McInnes 3678965ea79SLois Curfman McInnes /* post receives: */ 36813f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 369b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3708965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37113f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes } 3738965ea79SLois Curfman McInnes 3748965ea79SLois Curfman McInnes /* do sends: 3758965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3768965ea79SLois Curfman McInnes the ith processor 3778965ea79SLois Curfman McInnes */ 37813f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 379b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 38013f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 3818965ea79SLois Curfman McInnes starts[0] = 0; 382c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3838965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3848965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3858965ea79SLois Curfman McInnes } 3868965ea79SLois Curfman McInnes 3878965ea79SLois Curfman McInnes starts[0] = 0; 388c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3898965ea79SLois Curfman McInnes count = 0; 3908965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 391c1dc657dSBarry Smith if (nprocs[2*i+1]) { 39213f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3938965ea79SLois Curfman McInnes } 3948965ea79SLois Curfman McInnes } 395606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3968965ea79SLois Curfman McInnes 3978965ea79SLois Curfman McInnes base = owners[rank]; 3988965ea79SLois Curfman McInnes 3998965ea79SLois Curfman McInnes /* wait on receives */ 40013f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 4018965ea79SLois Curfman McInnes source = lens + nrecvs; 4028965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4038965ea79SLois Curfman McInnes while (count) { 404ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4058965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40613f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4078965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4088965ea79SLois Curfman McInnes lens[imdex] = n; 4098965ea79SLois Curfman McInnes slen += n; 4108965ea79SLois Curfman McInnes count--; 4118965ea79SLois Curfman McInnes } 412606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4138965ea79SLois Curfman McInnes 4148965ea79SLois Curfman McInnes /* move the data into the send scatter */ 41513f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4168965ea79SLois Curfman McInnes count = 0; 4178965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4188965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4198965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4208965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4218965ea79SLois Curfman McInnes } 4228965ea79SLois Curfman McInnes } 423606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 424606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 425606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 426606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4278965ea79SLois Curfman McInnes 4288965ea79SLois Curfman McInnes /* actually zap the local rows */ 429f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 430606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4318965ea79SLois Curfman McInnes 4328965ea79SLois Curfman McInnes /* wait on sends */ 4338965ea79SLois Curfman McInnes if (nsends) { 434b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 435ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 436606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4378965ea79SLois Curfman McInnes } 438606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 439606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4408965ea79SLois Curfman McInnes 4413a40ed3dSBarry Smith PetscFunctionReturn(0); 4428965ea79SLois Curfman McInnes } 4438965ea79SLois Curfman McInnes 4444a2ae208SSatish Balay #undef __FUNCT__ 4454a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 446dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4478965ea79SLois Curfman McInnes { 44839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 449dfbe8321SBarry Smith PetscErrorCode ierr; 450c456f294SBarry Smith 4513a40ed3dSBarry Smith PetscFunctionBegin; 452ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 453ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 45444cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4553a40ed3dSBarry Smith PetscFunctionReturn(0); 4568965ea79SLois Curfman McInnes } 4578965ea79SLois Curfman McInnes 4584a2ae208SSatish Balay #undef __FUNCT__ 4594a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 460dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4618965ea79SLois Curfman McInnes { 46239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 463dfbe8321SBarry Smith PetscErrorCode ierr; 464c456f294SBarry Smith 4653a40ed3dSBarry Smith PetscFunctionBegin; 466ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 467ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 46844cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4693a40ed3dSBarry Smith PetscFunctionReturn(0); 4708965ea79SLois Curfman McInnes } 4718965ea79SLois Curfman McInnes 4724a2ae208SSatish Balay #undef __FUNCT__ 4734a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 474dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 475096963f5SLois Curfman McInnes { 476096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 477dfbe8321SBarry Smith PetscErrorCode ierr; 47887828ca2SBarry Smith PetscScalar zero = 0.0; 479096963f5SLois Curfman McInnes 4803a40ed3dSBarry Smith PetscFunctionBegin; 4812dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 4827c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 483ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 484ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4853a40ed3dSBarry Smith PetscFunctionReturn(0); 486096963f5SLois Curfman McInnes } 487096963f5SLois Curfman McInnes 4884a2ae208SSatish Balay #undef __FUNCT__ 4894a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 490dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 491096963f5SLois Curfman McInnes { 492096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 493dfbe8321SBarry Smith PetscErrorCode ierr; 494096963f5SLois Curfman McInnes 4953a40ed3dSBarry Smith PetscFunctionBegin; 4963501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4977c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 498ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 499ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5003a40ed3dSBarry Smith PetscFunctionReturn(0); 501096963f5SLois Curfman McInnes } 502096963f5SLois Curfman McInnes 5034a2ae208SSatish Balay #undef __FUNCT__ 5044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 505dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5068965ea79SLois Curfman McInnes { 50739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 508096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 509dfbe8321SBarry Smith PetscErrorCode ierr; 510d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 51187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 512ed3cc1f0SBarry Smith 5133a40ed3dSBarry Smith PetscFunctionBegin; 5142dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5151ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 516096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 517d0f46423SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 518d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 519d0f46423SBarry Smith radd = A->rmap->rstart*m; 52044cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 521096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 522096963f5SLois Curfman McInnes } 5231ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5243a40ed3dSBarry Smith PetscFunctionReturn(0); 5258965ea79SLois Curfman McInnes } 5268965ea79SLois Curfman McInnes 5274a2ae208SSatish Balay #undef __FUNCT__ 5284a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 529dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5308965ea79SLois Curfman McInnes { 5313501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 532dfbe8321SBarry Smith PetscErrorCode ierr; 53301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 53401b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 53501b82886SBarry Smith #endif 536ed3cc1f0SBarry Smith 5373a40ed3dSBarry Smith PetscFunctionBegin; 53894d884c6SBarry Smith 539aa482453SBarry Smith #if defined(PETSC_USE_LOG) 540d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5418965ea79SLois Curfman McInnes #endif 5428798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5433501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 54405b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 54505b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 54601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 5472fbe02b9SBarry Smith if (lu) { 54862b4c0b3SBarry Smith ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 54962b4c0b3SBarry Smith ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 55062b4c0b3SBarry Smith ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 55109d27a7eSBarry Smith 5522fbe02b9SBarry Smith if (lu->is_pla) { 55301b82886SBarry Smith ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 55401b82886SBarry Smith ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 55501b82886SBarry Smith ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 556622d7880SLois Curfman McInnes } 5572fbe02b9SBarry Smith } 55801b82886SBarry Smith #endif 55901b82886SBarry Smith 560606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 561dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 562901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 563901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5644ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5654ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5664ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5673a40ed3dSBarry Smith PetscFunctionReturn(0); 5688965ea79SLois Curfman McInnes } 56939ddd567SLois Curfman McInnes 5704a2ae208SSatish Balay #undef __FUNCT__ 5714a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5726849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5738965ea79SLois Curfman McInnes { 57439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 575dfbe8321SBarry Smith PetscErrorCode ierr; 576aa05aa95SBarry Smith PetscViewerFormat format; 577aa05aa95SBarry Smith int fd; 578d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 579aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 580578230a0SSatish Balay PetscScalar *work,*v,*vv; 581aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 582aa05aa95SBarry Smith MPI_Status status; 5837056b6fcSBarry Smith 5843a40ed3dSBarry Smith PetscFunctionBegin; 58539ddd567SLois Curfman McInnes if (mdn->size == 1) { 58639ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 587aa05aa95SBarry Smith } else { 588aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 5897adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 5907adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 591aa05aa95SBarry Smith 592aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 5937973ad04SBarry Smith if (format == PETSC_VIEWER_NATIVE) { 594aa05aa95SBarry Smith 595aa05aa95SBarry Smith if (!rank) { 596aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 597aa05aa95SBarry Smith header[0] = MAT_FILE_COOKIE; 598d0f46423SBarry Smith header[1] = mat->rmap->N; 599aa05aa95SBarry Smith header[2] = N; 600aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 601aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 602aa05aa95SBarry Smith 603aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 604d0f46423SBarry Smith mmax = mat->rmap->n; 605aa05aa95SBarry Smith for (i=1; i<size; i++) { 606d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6078965ea79SLois Curfman McInnes } 608aa05aa95SBarry Smith ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 609aa05aa95SBarry Smith 610aa05aa95SBarry Smith /* write out local array, by rows */ 611d0f46423SBarry Smith m = mat->rmap->n; 612aa05aa95SBarry Smith v = a->v; 613aa05aa95SBarry Smith for (j=0; j<N; j++) { 614aa05aa95SBarry Smith for (i=0; i<m; i++) { 615578230a0SSatish Balay work[j + i*N] = *v++; 616aa05aa95SBarry Smith } 617aa05aa95SBarry Smith } 618aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 619aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 620aa05aa95SBarry Smith mmax = 0; 621aa05aa95SBarry Smith for (i=1; i<size; i++) { 622d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 623aa05aa95SBarry Smith } 624578230a0SSatish Balay ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 625aa05aa95SBarry Smith for(k = 1; k < size; k++) { 626f8009846SMatthew Knepley v = vv; 627d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 6287adad957SLisandro Dalcin ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 629aa05aa95SBarry Smith 630aa05aa95SBarry Smith for(j = 0; j < N; j++) { 631aa05aa95SBarry Smith for(i = 0; i < m; i++) { 632578230a0SSatish Balay work[j + i*N] = *v++; 633aa05aa95SBarry Smith } 634aa05aa95SBarry Smith } 635aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 636aa05aa95SBarry Smith } 637aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 638578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 639aa05aa95SBarry Smith } else { 640d0f46423SBarry Smith ierr = MPI_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 641aa05aa95SBarry Smith } 6424aa34b0aSBarry Smith } else { 6437973ad04SBarry Smith SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE"); 644aa05aa95SBarry Smith } 645aa05aa95SBarry Smith } 6463a40ed3dSBarry Smith PetscFunctionReturn(0); 6478965ea79SLois Curfman McInnes } 6488965ea79SLois Curfman McInnes 6494a2ae208SSatish Balay #undef __FUNCT__ 6504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6516849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6528965ea79SLois Curfman McInnes { 65339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 654dfbe8321SBarry Smith PetscErrorCode ierr; 65532dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 656a313700dSBarry Smith const PetscViewerType vtype; 65732077d6dSBarry Smith PetscTruth iascii,isdraw; 658b0a32e0cSBarry Smith PetscViewer sviewer; 659f3ef73ceSBarry Smith PetscViewerFormat format; 66001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 6615d00a290SHong Zhang Mat_Plapack *lu; 66201b82886SBarry Smith #endif 6638965ea79SLois Curfman McInnes 6643a40ed3dSBarry Smith PetscFunctionBegin; 66532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 666fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 66732077d6dSBarry Smith if (iascii) { 668b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 669b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 670456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6714e220ebcSLois Curfman McInnes MatInfo info; 672888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 673d0f46423SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n, 67477431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 675b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 67601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 67701b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 6785d00a290SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr); 6795d00a290SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr); 6805d00a290SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr); 6815d00a290SHong Zhang if (mat->factor){ 6825d00a290SHong Zhang lu=(Mat_Plapack*)(mat->spptr); 68301b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 6845d00a290SHong Zhang } 6855d00a290SHong Zhang #else 6865d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 68701b82886SBarry Smith #endif 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 689fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6903a40ed3dSBarry Smith PetscFunctionReturn(0); 6918965ea79SLois Curfman McInnes } 692f1af5d2fSBarry Smith } else if (isdraw) { 693b0a32e0cSBarry Smith PetscDraw draw; 694f1af5d2fSBarry Smith PetscTruth isnull; 695f1af5d2fSBarry Smith 696b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 697b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 698f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 699f1af5d2fSBarry Smith } 70077ed5343SBarry Smith 7018965ea79SLois Curfman McInnes if (size == 1) { 70239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 7033a40ed3dSBarry Smith } else { 7048965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7058965ea79SLois Curfman McInnes Mat A; 706d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 707ba8c8a56SBarry Smith PetscInt *cols; 708ba8c8a56SBarry Smith PetscScalar *vals; 7098965ea79SLois Curfman McInnes 7107adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 7118965ea79SLois Curfman McInnes if (!rank) { 712f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7133a40ed3dSBarry Smith } else { 714f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes } 7167adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 717878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 718878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 71952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 7208965ea79SLois Curfman McInnes 72139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72239ddd567SLois Curfman McInnes but it's quick for now */ 72351022da4SBarry Smith A->insertmode = INSERT_VALUES; 724d0f46423SBarry Smith row = mat->rmap->rstart; m = mdn->A->rmap->n; 7258965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 726ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 727ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 728ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72939ddd567SLois Curfman McInnes row++; 7308965ea79SLois Curfman McInnes } 7318965ea79SLois Curfman McInnes 7326d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7336d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 735b9b97703SBarry Smith if (!rank) { 7366831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7378965ea79SLois Curfman McInnes } 738b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 739b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7408965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 7418965ea79SLois Curfman McInnes } 7423a40ed3dSBarry Smith PetscFunctionReturn(0); 7438965ea79SLois Curfman McInnes } 7448965ea79SLois Curfman McInnes 7454a2ae208SSatish Balay #undef __FUNCT__ 7464a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 747dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7488965ea79SLois Curfman McInnes { 749dfbe8321SBarry Smith PetscErrorCode ierr; 75032077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 7518965ea79SLois Curfman McInnes 752433994e6SBarry Smith PetscFunctionBegin; 7530f5bd95cSBarry Smith 75432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 755fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 756b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 757fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 7580f5bd95cSBarry Smith 75932077d6dSBarry Smith if (iascii || issocket || isdraw) { 760f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7610f5bd95cSBarry Smith } else if (isbinary) { 7623a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 7635cd90555SBarry Smith } else { 764958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 7658965ea79SLois Curfman McInnes } 7663a40ed3dSBarry Smith PetscFunctionReturn(0); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 7694a2ae208SSatish Balay #undef __FUNCT__ 7704a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 771dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7728965ea79SLois Curfman McInnes { 7733501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7743501a2bdSLois Curfman McInnes Mat mdn = mat->A; 775dfbe8321SBarry Smith PetscErrorCode ierr; 776329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7778965ea79SLois Curfman McInnes 7783a40ed3dSBarry Smith PetscFunctionBegin; 7794e220ebcSLois Curfman McInnes info->block_size = 1.0; 7804e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7814e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7824e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7838965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7874e220ebcSLois Curfman McInnes info->memory = isend[3]; 7884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7898965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 7914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7968965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 7984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8038965ea79SLois Curfman McInnes } 8044e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8054e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8064e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8073a40ed3dSBarry Smith PetscFunctionReturn(0); 8088965ea79SLois Curfman McInnes } 8098965ea79SLois Curfman McInnes 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 8124e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 8138965ea79SLois Curfman McInnes { 81439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 815dfbe8321SBarry Smith PetscErrorCode ierr; 8168965ea79SLois Curfman McInnes 8173a40ed3dSBarry Smith PetscFunctionBegin; 81812c028f9SKris Buschelman switch (op) { 819512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8224e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82312c028f9SKris Buschelman break; 82412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8254e0d8c25SBarry Smith a->roworiented = flg; 8264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82712c028f9SKris Buschelman break; 8284e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 830290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83112c028f9SKris Buschelman break; 83212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8334e0d8c25SBarry Smith a->donotstash = flg; 83412c028f9SKris Buschelman break; 83577e54ba9SKris Buschelman case MAT_SYMMETRIC: 83677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8379a4540c5SBarry Smith case MAT_HERMITIAN: 8389a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 839600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 840290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84177e54ba9SKris Buschelman break; 84212c028f9SKris Buschelman default: 843600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8443a40ed3dSBarry Smith } 8453a40ed3dSBarry Smith PetscFunctionReturn(0); 8468965ea79SLois Curfman McInnes } 8478965ea79SLois Curfman McInnes 8488965ea79SLois Curfman McInnes 8494a2ae208SSatish Balay #undef __FUNCT__ 8504a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 851dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8525b2fa520SLois Curfman McInnes { 8535b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8545b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85587828ca2SBarry Smith PetscScalar *l,*r,x,*v; 856dfbe8321SBarry Smith PetscErrorCode ierr; 857d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8585b2fa520SLois Curfman McInnes 8595b2fa520SLois Curfman McInnes PetscFunctionBegin; 86072d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8615b2fa520SLois Curfman McInnes if (ll) { 86272d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 863175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8641ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8665b2fa520SLois Curfman McInnes x = l[i]; 8675b2fa520SLois Curfman McInnes v = mat->v + i; 8685b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8695b2fa520SLois Curfman McInnes } 8701ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 871efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8725b2fa520SLois Curfman McInnes } 8735b2fa520SLois Curfman McInnes if (rr) { 874175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 875175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 876ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 877ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8781ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8795b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8805b2fa520SLois Curfman McInnes x = r[i]; 8815b2fa520SLois Curfman McInnes v = mat->v + i*m; 8825b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8835b2fa520SLois Curfman McInnes } 8841ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 885efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8865b2fa520SLois Curfman McInnes } 8875b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8885b2fa520SLois Curfman McInnes } 8895b2fa520SLois Curfman McInnes 8904a2ae208SSatish Balay #undef __FUNCT__ 8914a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 892dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 893096963f5SLois Curfman McInnes { 8943501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8953501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 89713f74950SBarry Smith PetscInt i,j; 898329f5518SBarry Smith PetscReal sum = 0.0; 89987828ca2SBarry Smith PetscScalar *v = mat->v; 9003501a2bdSLois Curfman McInnes 9013a40ed3dSBarry Smith PetscFunctionBegin; 9023501a2bdSLois Curfman McInnes if (mdn->size == 1) { 903064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9043501a2bdSLois Curfman McInnes } else { 9053501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 906d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 907aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 908329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9093501a2bdSLois Curfman McInnes #else 9103501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 9113501a2bdSLois Curfman McInnes #endif 9123501a2bdSLois Curfman McInnes } 9137adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 914064f8208SBarry Smith *nrm = sqrt(*nrm); 915*dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9163a40ed3dSBarry Smith } else if (type == NORM_1) { 917329f5518SBarry Smith PetscReal *tmp,*tmp2; 918d0f46423SBarry Smith ierr = PetscMalloc(2*A->cmap->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 919d0f46423SBarry Smith tmp2 = tmp + A->cmap->N; 920d0f46423SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 921064f8208SBarry Smith *nrm = 0.0; 9223501a2bdSLois Curfman McInnes v = mat->v; 923d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 924d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92567e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9263501a2bdSLois Curfman McInnes } 9273501a2bdSLois Curfman McInnes } 928d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 929d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 930064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9313501a2bdSLois Curfman McInnes } 932606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 933d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9343a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 935329f5518SBarry Smith PetscReal ntemp; 9363501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 9377adad957SLisandro Dalcin ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 9383a40ed3dSBarry Smith } else { 93929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 9403501a2bdSLois Curfman McInnes } 9413501a2bdSLois Curfman McInnes } 9423a40ed3dSBarry Smith PetscFunctionReturn(0); 9433501a2bdSLois Curfman McInnes } 9443501a2bdSLois Curfman McInnes 9454a2ae208SSatish Balay #undef __FUNCT__ 9464a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 947fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9483501a2bdSLois Curfman McInnes { 9493501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9503501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9513501a2bdSLois Curfman McInnes Mat B; 952d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9536849ba73SBarry Smith PetscErrorCode ierr; 95413f74950SBarry Smith PetscInt j,i; 95587828ca2SBarry Smith PetscScalar *v; 9563501a2bdSLois Curfman McInnes 9573a40ed3dSBarry Smith PetscFunctionBegin; 958e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 959fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 9607adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 961d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9627adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 963878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 964fc4dec0aSBarry Smith } else { 965fc4dec0aSBarry Smith B = *matout; 966fc4dec0aSBarry Smith } 9673501a2bdSLois Curfman McInnes 968d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 9691acff37aSSatish Balay ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9703501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9711acff37aSSatish Balay for (j=0; j<n; j++) { 9723501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9733501a2bdSLois Curfman McInnes v += m; 9743501a2bdSLois Curfman McInnes } 975606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9766d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9776d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 978815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9793501a2bdSLois Curfman McInnes *matout = B; 9803501a2bdSLois Curfman McInnes } else { 981273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9823501a2bdSLois Curfman McInnes } 9833a40ed3dSBarry Smith PetscFunctionReturn(0); 984096963f5SLois Curfman McInnes } 985096963f5SLois Curfman McInnes 986d9eff348SSatish Balay #include "petscblaslapack.h" 9874a2ae208SSatish Balay #undef __FUNCT__ 9884a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 989f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 99044cd7ae7SLois Curfman McInnes { 99144cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 99244cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 993f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 994efee365bSSatish Balay PetscErrorCode ierr; 995d0f46423SBarry Smith PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap->n*inA->cmap->N); 99644cd7ae7SLois Curfman McInnes 9973a40ed3dSBarry Smith PetscFunctionBegin; 998f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 999efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 10003a40ed3dSBarry Smith PetscFunctionReturn(0); 100144cd7ae7SLois Curfman McInnes } 100244cd7ae7SLois Curfman McInnes 10036849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 10048965ea79SLois Curfman McInnes 10054a2ae208SSatish Balay #undef __FUNCT__ 10064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1007dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1008273d9f13SBarry Smith { 1009dfbe8321SBarry Smith PetscErrorCode ierr; 1010273d9f13SBarry Smith 1011273d9f13SBarry Smith PetscFunctionBegin; 1012273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1013273d9f13SBarry Smith PetscFunctionReturn(0); 1014273d9f13SBarry Smith } 1015273d9f13SBarry Smith 101601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1017eae6fb2eSBarry Smith 1018eae6fb2eSBarry Smith #undef __FUNCT__ 1019eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack" 1020eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F) 1021eae6fb2eSBarry Smith { 1022eae6fb2eSBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1023eae6fb2eSBarry Smith PetscErrorCode ierr; 1024d0f46423SBarry Smith PetscInt M=A->cmap->N,m=A->rmap->n,rstart; 1025eae6fb2eSBarry Smith PetscScalar *array; 1026eae6fb2eSBarry Smith PetscReal one = 1.0; 1027eae6fb2eSBarry Smith 1028eae6fb2eSBarry Smith PetscFunctionBegin; 10292fbe02b9SBarry Smith /* Copy A into F->lu->A */ 1030eae6fb2eSBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 1031eae6fb2eSBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 1032eae6fb2eSBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 103379b0a62dSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1034eae6fb2eSBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1035eae6fb2eSBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 1036eae6fb2eSBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1037eae6fb2eSBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1038eae6fb2eSBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 1039eae6fb2eSBarry Smith lu->rstart = rstart; 1040eae6fb2eSBarry Smith PetscFunctionReturn(0); 1041eae6fb2eSBarry Smith } 1042eae6fb2eSBarry Smith 104301b82886SBarry Smith #undef __FUNCT__ 10442fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack" 10452fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A) 10462fbe02b9SBarry Smith { 10472fbe02b9SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 10482fbe02b9SBarry Smith PetscErrorCode ierr; 1049d0f46423SBarry Smith PetscInt M=A->cmap->N,m=A->rmap->n,rstart; 10502fbe02b9SBarry Smith PetscScalar *array; 10512fbe02b9SBarry Smith PetscReal one = 1.0; 10522fbe02b9SBarry Smith 10532fbe02b9SBarry Smith PetscFunctionBegin; 10542fbe02b9SBarry Smith /* Copy F into A->lu->A */ 105579b0a62dSBarry Smith ierr = MatZeroEntries(A);CHKERRQ(ierr); 10562fbe02b9SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 10572fbe02b9SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 10582fbe02b9SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 10592fbe02b9SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 10602fbe02b9SBarry Smith ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr); 10612fbe02b9SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 10622fbe02b9SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 10632fbe02b9SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 10642fbe02b9SBarry Smith lu->rstart = rstart; 10652fbe02b9SBarry Smith PetscFunctionReturn(0); 10662fbe02b9SBarry Smith } 10672fbe02b9SBarry Smith 10682fbe02b9SBarry Smith #undef __FUNCT__ 10692fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 10702fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 10712fbe02b9SBarry Smith { 10722fbe02b9SBarry Smith PetscErrorCode ierr; 10732fbe02b9SBarry Smith Mat_Plapack *luA = (Mat_Plapack*)A->spptr; 10742fbe02b9SBarry Smith Mat_Plapack *luB = (Mat_Plapack*)B->spptr; 10752fbe02b9SBarry Smith Mat_Plapack *luC = (Mat_Plapack*)C->spptr; 10762fbe02b9SBarry Smith PLA_Obj alpha = NULL,beta = NULL; 10772fbe02b9SBarry Smith 10782fbe02b9SBarry Smith PetscFunctionBegin; 10792fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr); 10802fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr); 10812fbe02b9SBarry Smith 10826e6f9017SBarry Smith /* 1083cb2480eaSBarry Smith ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr); 1084cb2480eaSBarry Smith ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr); 10856e6f9017SBarry Smith */ 1086cb2480eaSBarry Smith 10872fbe02b9SBarry Smith /* do the multiply in PLA */ 108879b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr); 108979b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr); 109079b0a62dSBarry Smith CHKMEMQ; 10912fbe02b9SBarry Smith 1092f0e3846dSSatish Balay ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A); /* CHKERRQ(ierr); */ 109379b0a62dSBarry Smith CHKMEMQ; 10942fbe02b9SBarry Smith ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr); 10952fbe02b9SBarry Smith ierr = PLA_Obj_free(&beta);CHKERRQ(ierr); 10962fbe02b9SBarry Smith 10976e6f9017SBarry Smith /* 1098cb2480eaSBarry Smith ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr); 10996e6f9017SBarry Smith */ 11002fbe02b9SBarry Smith ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr); 11012fbe02b9SBarry Smith PetscFunctionReturn(0); 11022fbe02b9SBarry Smith } 11032fbe02b9SBarry Smith 11042fbe02b9SBarry Smith #undef __FUNCT__ 11052fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 11062fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 11072fbe02b9SBarry Smith { 11082fbe02b9SBarry Smith PetscErrorCode ierr; 1109d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 11102fbe02b9SBarry Smith Mat Cmat; 11112fbe02b9SBarry Smith 11122fbe02b9SBarry Smith PetscFunctionBegin; 1113d0f46423SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 11146e6f9017SBarry Smith SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported"); 11152fbe02b9SBarry Smith ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 1116d0f46423SBarry Smith ierr = MatSetSizes(Cmat,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr); 11172fbe02b9SBarry Smith ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 11182fbe02b9SBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11192fbe02b9SBarry Smith ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 112085bd4cefSHong Zhang 11212fbe02b9SBarry Smith *C = Cmat; 11222fbe02b9SBarry Smith PetscFunctionReturn(0); 11232fbe02b9SBarry Smith } 11242fbe02b9SBarry Smith 11252fbe02b9SBarry Smith #undef __FUNCT__ 11262fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 11272fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 11282fbe02b9SBarry Smith { 11292fbe02b9SBarry Smith PetscErrorCode ierr; 11302fbe02b9SBarry Smith 11312fbe02b9SBarry Smith PetscFunctionBegin; 11322fbe02b9SBarry Smith if (scall == MAT_INITIAL_MATRIX){ 11332fbe02b9SBarry Smith ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 11342fbe02b9SBarry Smith } 11352fbe02b9SBarry Smith ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 11362fbe02b9SBarry Smith PetscFunctionReturn(0); 11372fbe02b9SBarry Smith } 11382fbe02b9SBarry Smith 1139ab235cb6SHong Zhang #undef __FUNCT__ 11406c995c7dSHong Zhang #define __FUNCT__ "MatSolve_MPIDense" 11416c995c7dSHong Zhang PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x) 11426c995c7dSHong Zhang { 11436c995c7dSHong Zhang MPI_Comm comm = ((PetscObject)A)->comm; 11446c995c7dSHong Zhang Mat_Plapack *lu = (Mat_Plapack*)A->spptr; 11456c995c7dSHong Zhang PetscErrorCode ierr; 1146d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride; 11476c995c7dSHong Zhang PetscScalar *array; 11486c995c7dSHong Zhang PetscReal one = 1.0; 11496c995c7dSHong Zhang PetscMPIInt size,rank,r_rank,r_nproc,c_rank,c_nproc;; 11506c995c7dSHong Zhang PLA_Obj v_pla = NULL; 11516c995c7dSHong Zhang PetscScalar *loc_buf; 11526c995c7dSHong Zhang Vec loc_x; 11536c995c7dSHong Zhang 11546c995c7dSHong Zhang PetscFunctionBegin; 11556c995c7dSHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 11566c995c7dSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 11576c995c7dSHong Zhang 11586c995c7dSHong Zhang /* Create PLAPACK vector objects, then copy b into PLAPACK b */ 11596c995c7dSHong Zhang PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla); 11606c995c7dSHong Zhang PLA_Obj_set_to_zero(v_pla); 11616c995c7dSHong Zhang 11626c995c7dSHong Zhang /* Copy b into rhs_pla */ 11636c995c7dSHong Zhang PLA_API_begin(); 11646c995c7dSHong Zhang PLA_Obj_API_open(v_pla); 11656c995c7dSHong Zhang ierr = VecGetArray(b,&array);CHKERRQ(ierr); 11666c995c7dSHong Zhang PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart); 11676c995c7dSHong Zhang ierr = VecRestoreArray(b,&array);CHKERRQ(ierr); 11686c995c7dSHong Zhang PLA_Obj_API_close(v_pla); 11696c995c7dSHong Zhang PLA_API_end(); 11706c995c7dSHong Zhang 11716c995c7dSHong Zhang if (A->factor == MAT_FACTOR_LU){ 11726c995c7dSHong Zhang /* Apply the permutations to the right hand sides */ 11736c995c7dSHong Zhang PLA_Apply_pivots_to_rows (v_pla,lu->pivots); 11746c995c7dSHong Zhang 11756c995c7dSHong Zhang /* Solve L y = b, overwriting b with y */ 11766c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla ); 11776c995c7dSHong Zhang 11786c995c7dSHong Zhang /* Solve U x = y (=b), overwriting b with x */ 11796c995c7dSHong Zhang PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla ); 11806c995c7dSHong Zhang } else { /* MAT_FACTOR_CHOLESKY */ 11816c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla); 11826c995c7dSHong Zhang PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE), 11836c995c7dSHong Zhang PLA_NONUNIT_DIAG,lu->A,v_pla); 11846c995c7dSHong Zhang } 11856c995c7dSHong Zhang 11866c995c7dSHong Zhang /* Copy PLAPACK x into Petsc vector x */ 11876c995c7dSHong Zhang PLA_Obj_local_length(v_pla, &loc_m); 11886c995c7dSHong Zhang PLA_Obj_local_buffer(v_pla, (void**)&loc_buf); 11896c995c7dSHong Zhang PLA_Obj_local_stride(v_pla, &loc_stride); 11906c995c7dSHong Zhang /* 11916c995c7dSHong Zhang PetscPrintf(PETSC_COMM_SELF," [%d] b - local_m %d local_stride %d, loc_buf: %g %g, nb: %d\n",rank,loc_m,loc_stride,loc_buf[0],loc_buf[(loc_m-1)*loc_stride],lu->nb); 11926c995c7dSHong Zhang */ 11936c995c7dSHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr); 11946c995c7dSHong Zhang if (!lu->pla_solved){ 11956c995c7dSHong Zhang 11965d00a290SHong Zhang PLA_Temp_comm_row_info(lu->templ,&Plapack_comm_2d,&r_rank,&r_nproc); 11975d00a290SHong Zhang PLA_Temp_comm_col_info(lu->templ,&Plapack_comm_2d,&c_rank,&c_nproc); 11986c995c7dSHong Zhang 11996c995c7dSHong Zhang /* Create IS and cts for VecScatterring */ 12006c995c7dSHong Zhang PLA_Obj_local_length(v_pla, &loc_m); 12016c995c7dSHong Zhang PLA_Obj_local_stride(v_pla, &loc_stride); 12026c995c7dSHong Zhang ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr); 12036c995c7dSHong Zhang idx_petsc = idx_pla + loc_m; 12046c995c7dSHong Zhang 12056c995c7dSHong Zhang rstart = (r_rank*c_nproc+c_rank)*lu->nb; 12066c995c7dSHong Zhang for (i=0; i<loc_m; i+=lu->nb){ 12076c995c7dSHong Zhang j = 0; 12086c995c7dSHong Zhang while (j < lu->nb && i+j < loc_m){ 12096c995c7dSHong Zhang idx_petsc[i+j] = rstart + j; j++; 12106c995c7dSHong Zhang } 12116c995c7dSHong Zhang rstart += size*lu->nb; 12126c995c7dSHong Zhang } 12136c995c7dSHong Zhang 12146c995c7dSHong Zhang for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride; 12156c995c7dSHong Zhang 12166c995c7dSHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr); 12176c995c7dSHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr); 12186c995c7dSHong Zhang ierr = PetscFree(idx_pla);CHKERRQ(ierr); 12196c995c7dSHong Zhang ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr); 12206c995c7dSHong Zhang } 12216c995c7dSHong Zhang ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12226c995c7dSHong Zhang ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12236c995c7dSHong Zhang 12246c995c7dSHong Zhang /* Free data */ 12256c995c7dSHong Zhang ierr = VecDestroy(loc_x);CHKERRQ(ierr); 12266c995c7dSHong Zhang PLA_Obj_free(&v_pla); 12276c995c7dSHong Zhang 12286c995c7dSHong Zhang lu->pla_solved = PETSC_TRUE; 12296c995c7dSHong Zhang PetscFunctionReturn(0); 12306c995c7dSHong Zhang } 12316c995c7dSHong Zhang 12326c995c7dSHong Zhang #undef __FUNCT__ 12336c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorNumeric_MPIDense" 12340481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info) 12356c995c7dSHong Zhang { 1236719d5645SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 12376c995c7dSHong Zhang PetscErrorCode ierr; 1238d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,rend; 12396c995c7dSHong Zhang PetscInt info_pla=0; 12406c995c7dSHong Zhang PetscScalar *array,one = 1.0; 12416c995c7dSHong Zhang 12426c995c7dSHong Zhang PetscFunctionBegin; 12436c995c7dSHong Zhang if (lu->mstruct == SAME_NONZERO_PATTERN){ 12446c995c7dSHong Zhang PLA_Obj_free(&lu->A); 12456c995c7dSHong Zhang PLA_Obj_free (&lu->pivots); 12466c995c7dSHong Zhang } 12476c995c7dSHong Zhang /* Create PLAPACK matrix object */ 12486c995c7dSHong Zhang lu->A = NULL; lu->pivots = NULL; 12496c995c7dSHong Zhang PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A); 12506c995c7dSHong Zhang PLA_Obj_set_to_zero(lu->A); 12516c995c7dSHong Zhang PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots); 12526c995c7dSHong Zhang 12536c995c7dSHong Zhang /* Copy A into lu->A */ 12546c995c7dSHong Zhang PLA_API_begin(); 12556c995c7dSHong Zhang PLA_Obj_API_open(lu->A); 12566c995c7dSHong Zhang ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 12576c995c7dSHong Zhang ierr = MatGetArray(A,&array);CHKERRQ(ierr); 12586c995c7dSHong Zhang PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0); 12596c995c7dSHong Zhang ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 12606c995c7dSHong Zhang PLA_Obj_API_close(lu->A); 12616c995c7dSHong Zhang PLA_API_end(); 12626c995c7dSHong Zhang 12636c995c7dSHong Zhang /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */ 12646c995c7dSHong Zhang info_pla = PLA_LU(lu->A,lu->pivots); 12656c995c7dSHong Zhang if (info_pla != 0) 12666c995c7dSHong Zhang SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla); 12676c995c7dSHong Zhang 12686c995c7dSHong Zhang lu->rstart = rstart; 12696c995c7dSHong Zhang lu->mstruct = SAME_NONZERO_PATTERN; 1270719d5645SBarry Smith F->ops->solve = MatSolve_MPIDense; 1271719d5645SBarry Smith F->assembled = PETSC_TRUE; /* required by -ksp_view */ 12726c995c7dSHong Zhang PetscFunctionReturn(0); 12736c995c7dSHong Zhang } 12746c995c7dSHong Zhang 12756c995c7dSHong Zhang #undef __FUNCT__ 12766c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense" 12770481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info) 12786c995c7dSHong Zhang { 1279719d5645SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)F->spptr; 12806c995c7dSHong Zhang PetscErrorCode ierr; 1281d0f46423SBarry Smith PetscInt M=A->rmap->N,m=A->rmap->n,rstart,rend; 12826c995c7dSHong Zhang PetscInt info_pla=0; 12836c995c7dSHong Zhang PetscScalar *array,one = 1.0; 12846c995c7dSHong Zhang 12856c995c7dSHong Zhang PetscFunctionBegin; 12866c995c7dSHong Zhang if (lu->mstruct == SAME_NONZERO_PATTERN){ 12876c995c7dSHong Zhang PLA_Obj_free(&lu->A); 12886c995c7dSHong Zhang } 12896c995c7dSHong Zhang /* Create PLAPACK matrix object */ 12906c995c7dSHong Zhang lu->A = NULL; 12916c995c7dSHong Zhang lu->pivots = NULL; 12926c995c7dSHong Zhang PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A); 12936c995c7dSHong Zhang 12946c995c7dSHong Zhang /* Copy A into lu->A */ 12956c995c7dSHong Zhang PLA_API_begin(); 12966c995c7dSHong Zhang PLA_Obj_API_open(lu->A); 12976c995c7dSHong Zhang ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 12986c995c7dSHong Zhang ierr = MatGetArray(A,&array);CHKERRQ(ierr); 12996c995c7dSHong Zhang PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0); 13006c995c7dSHong Zhang ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 13016c995c7dSHong Zhang PLA_Obj_API_close(lu->A); 13026c995c7dSHong Zhang PLA_API_end(); 13036c995c7dSHong Zhang 13046c995c7dSHong Zhang /* Factor P A -> Chol */ 13056c995c7dSHong Zhang info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A); 13066c995c7dSHong Zhang if (info_pla != 0) 13076c995c7dSHong Zhang SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla); 13086c995c7dSHong Zhang 13096c995c7dSHong Zhang lu->rstart = rstart; 13106c995c7dSHong Zhang lu->mstruct = SAME_NONZERO_PATTERN; 1311719d5645SBarry Smith F->ops->solve = MatSolve_MPIDense; 1312719d5645SBarry Smith F->assembled = PETSC_TRUE; /* required by -ksp_view */ 13136c995c7dSHong Zhang PetscFunctionReturn(0); 13146c995c7dSHong Zhang } 13156c995c7dSHong Zhang 1316b24902e0SBarry Smith /* Note the Petsc perm permutation is ignored */ 13172fbe02b9SBarry Smith #undef __FUNCT__ 13186c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 13190481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat F,Mat A,IS perm,const MatFactorInfo *info) 132001b82886SBarry Smith { 132101b82886SBarry Smith PetscErrorCode ierr; 1322b24902e0SBarry Smith PetscTruth issymmetric,set; 132301b82886SBarry Smith 132401b82886SBarry Smith PetscFunctionBegin; 1325b24902e0SBarry Smith ierr = MatIsSymmetricKnown(A,&set,&issymmetric);CHKERRQ(ierr); 1326b24902e0SBarry Smith if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 1327719d5645SBarry Smith F->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_MPIDense; 1328b24902e0SBarry Smith PetscFunctionReturn(0); 132901b82886SBarry Smith } 133001b82886SBarry Smith 1331b24902e0SBarry Smith /* Note the Petsc r and c permutations are ignored */ 1332b24902e0SBarry Smith #undef __FUNCT__ 13336c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 13340481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 1335b24902e0SBarry Smith { 1336b24902e0SBarry Smith PetscErrorCode ierr; 1337d0f46423SBarry Smith PetscInt M = A->rmap->N; 1338b24902e0SBarry Smith Mat_Plapack *lu; 133901b82886SBarry Smith 1340b24902e0SBarry Smith PetscFunctionBegin; 1341719d5645SBarry Smith lu = (Mat_Plapack*)F->spptr; 1342b24902e0SBarry Smith ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 1343719d5645SBarry Smith F->ops->lufactornumeric = MatLUFactorNumeric_MPIDense; 134401b82886SBarry Smith PetscFunctionReturn(0); 134501b82886SBarry Smith } 134601b82886SBarry Smith 1347b6806ab0SHong Zhang EXTERN_C_BEGIN 134801b82886SBarry Smith #undef __FUNCT__ 1349b6806ab0SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_mpidense_plapack" 1350b6806ab0SHong Zhang PetscErrorCode MatFactorGetSolverPackage_mpidense_plapack(Mat A,const MatSolverPackage *type) 1351b6806ab0SHong Zhang { 1352b6806ab0SHong Zhang PetscFunctionBegin; 1353b6806ab0SHong Zhang *type = MAT_SOLVER_PLAPACK; 1354b6806ab0SHong Zhang PetscFunctionReturn(0); 1355b6806ab0SHong Zhang } 1356b6806ab0SHong Zhang EXTERN_C_END 1357b6806ab0SHong Zhang 1358b6806ab0SHong Zhang #undef __FUNCT__ 1359b6806ab0SHong Zhang #define __FUNCT__ "MatGetFactor_mpidense_plapack" 1360b6806ab0SHong Zhang PetscErrorCode MatGetFactor_mpidense_plapack(Mat A,MatFactorType ftype,Mat *F) 136101b82886SBarry Smith { 136201b82886SBarry Smith PetscErrorCode ierr; 13636c995c7dSHong Zhang Mat_Plapack *lu; 13646c995c7dSHong Zhang PetscMPIInt size; 136585bd4cefSHong Zhang PetscInt M=A->rmap->N; 136601b82886SBarry Smith 136701b82886SBarry Smith PetscFunctionBegin; 136801b82886SBarry Smith /* Create the factorization matrix */ 1369eae6fb2eSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr); 1370d0f46423SBarry Smith ierr = MatSetSizes(*F,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1371eae6fb2eSBarry Smith ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr); 137285bd4cefSHong Zhang ierr = PetscNewLog(*F,Mat_Plapack,&lu);CHKERRQ(ierr); 137385bd4cefSHong Zhang (*F)->spptr = (void*)lu; 137401b82886SBarry Smith 1375b24902e0SBarry Smith /* Set default Plapack parameters */ 13766c995c7dSHong Zhang ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1377b24902e0SBarry Smith lu->nb = M/size; 1378b24902e0SBarry Smith if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 137901b82886SBarry Smith 1380b24902e0SBarry Smith /* Set runtime options */ 1381b24902e0SBarry Smith ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1382b24902e0SBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1383b24902e0SBarry Smith PetscOptionsEnd(); 138401b82886SBarry Smith 1385b24902e0SBarry Smith /* Create object distribution template */ 1386b24902e0SBarry Smith lu->templ = NULL; 1387b24902e0SBarry Smith ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 1388b24902e0SBarry Smith 1389b24902e0SBarry Smith /* Set the datatype */ 1390b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX) 1391b24902e0SBarry Smith lu->datatype = MPI_DOUBLE_COMPLEX; 1392b24902e0SBarry Smith #else 1393b24902e0SBarry Smith lu->datatype = MPI_DOUBLE; 1394b24902e0SBarry Smith #endif 1395b24902e0SBarry Smith 1396d0f46423SBarry Smith ierr = PLA_Matrix_create(lu->datatype,M,A->cmap->N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 1397b24902e0SBarry Smith 1398b24902e0SBarry Smith 1399b24902e0SBarry Smith lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 14005d00a290SHong Zhang lu->mstruct = DIFFERENT_NONZERO_PATTERN; 1401b24902e0SBarry Smith 1402b24902e0SBarry Smith if (ftype == MAT_FACTOR_LU) { 1403b24902e0SBarry Smith (*F)->ops->lufactorsymbolic = MatLUFactorSymbolic_MPIDense; 1404b24902e0SBarry Smith } else if (ftype == MAT_FACTOR_CHOLESKY) { 14056c995c7dSHong Zhang (*F)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_MPIDense; 1406b24902e0SBarry Smith } else SETERRQ(PETSC_ERR_SUP,"No incomplete factorizations for dense matrices"); 1407719d5645SBarry Smith (*F)->factor = ftype; 1408b6806ab0SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)(*F),"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_mpidense_plapack",MatFactorGetSolverPackage_mpidense_plapack);CHKERRQ(ierr); 140901b82886SBarry Smith PetscFunctionReturn(0); 141001b82886SBarry Smith } 141101b82886SBarry Smith #endif 141201b82886SBarry Smith 1413488007eeSBarry Smith #undef __FUNCT__ 1414488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 1415488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 1416488007eeSBarry Smith { 1417488007eeSBarry Smith PetscErrorCode ierr; 1418488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1419488007eeSBarry Smith 1420488007eeSBarry Smith PetscFunctionBegin; 1421488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1422488007eeSBarry Smith PetscFunctionReturn(0); 1423488007eeSBarry Smith } 1424488007eeSBarry Smith 14258965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 142609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 142709dc0095SBarry Smith MatGetRow_MPIDense, 142809dc0095SBarry Smith MatRestoreRow_MPIDense, 142909dc0095SBarry Smith MatMult_MPIDense, 143097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 14317c922b88SBarry Smith MatMultTranspose_MPIDense, 14327c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 14338965ea79SLois Curfman McInnes 0, 143409dc0095SBarry Smith 0, 143509dc0095SBarry Smith 0, 143697304618SKris Buschelman /*10*/ 0, 143709dc0095SBarry Smith 0, 143809dc0095SBarry Smith 0, 143909dc0095SBarry Smith 0, 144009dc0095SBarry Smith MatTranspose_MPIDense, 144197304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 14426e4ee0c6SHong Zhang MatEqual_MPIDense, 144309dc0095SBarry Smith MatGetDiagonal_MPIDense, 14445b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 144509dc0095SBarry Smith MatNorm_MPIDense, 144697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 144709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 144809dc0095SBarry Smith 0, 144909dc0095SBarry Smith MatSetOption_MPIDense, 145009dc0095SBarry Smith MatZeroEntries_MPIDense, 145197304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 1452919b68f7SBarry Smith 0, 145301b82886SBarry Smith 0, 145401b82886SBarry Smith 0, 145501b82886SBarry Smith 0, 145697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1457273d9f13SBarry Smith 0, 145809dc0095SBarry Smith 0, 145909dc0095SBarry Smith MatGetArray_MPIDense, 146009dc0095SBarry Smith MatRestoreArray_MPIDense, 146197304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 146209dc0095SBarry Smith 0, 146309dc0095SBarry Smith 0, 146409dc0095SBarry Smith 0, 146509dc0095SBarry Smith 0, 1466488007eeSBarry Smith /*40*/ MatAXPY_MPIDense, 14672ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 146809dc0095SBarry Smith 0, 146909dc0095SBarry Smith MatGetValues_MPIDense, 147009dc0095SBarry Smith 0, 147197304618SKris Buschelman /*45*/ 0, 147209dc0095SBarry Smith MatScale_MPIDense, 147309dc0095SBarry Smith 0, 147409dc0095SBarry Smith 0, 147509dc0095SBarry Smith 0, 1476521d7252SBarry Smith /*50*/ 0, 147709dc0095SBarry Smith 0, 147809dc0095SBarry Smith 0, 147909dc0095SBarry Smith 0, 148009dc0095SBarry Smith 0, 148197304618SKris Buschelman /*55*/ 0, 148209dc0095SBarry Smith 0, 148309dc0095SBarry Smith 0, 148409dc0095SBarry Smith 0, 148509dc0095SBarry Smith 0, 148697304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1487b9b97703SBarry Smith MatDestroy_MPIDense, 1488b9b97703SBarry Smith MatView_MPIDense, 1489357abbc8SBarry Smith 0, 149097304618SKris Buschelman 0, 149197304618SKris Buschelman /*65*/ 0, 149297304618SKris Buschelman 0, 149397304618SKris Buschelman 0, 149497304618SKris Buschelman 0, 149597304618SKris Buschelman 0, 149697304618SKris Buschelman /*70*/ 0, 149797304618SKris Buschelman 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 150197304618SKris Buschelman /*75*/ 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 150697304618SKris Buschelman /*80*/ 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 150997304618SKris Buschelman 0, 1510865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1511865e5f61SKris Buschelman 0, 1512865e5f61SKris Buschelman 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 15162fbe02b9SBarry Smith /*90*/ 15172fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15182fbe02b9SBarry Smith MatMatMult_MPIDense_MPIDense, 15194ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 15202fbe02b9SBarry Smith MatMatMultNumeric_MPIDense_MPIDense, 15212fbe02b9SBarry Smith #else 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 1524865e5f61SKris Buschelman 0, 15252fbe02b9SBarry Smith #endif 15262fbe02b9SBarry Smith 0, 1527865e5f61SKris Buschelman /*95*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0}; 15318965ea79SLois Curfman McInnes 1532273d9f13SBarry Smith EXTERN_C_BEGIN 15334a2ae208SSatish Balay #undef __FUNCT__ 1534a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1535be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1536a23d5eceSKris Buschelman { 1537a23d5eceSKris Buschelman Mat_MPIDense *a; 1538dfbe8321SBarry Smith PetscErrorCode ierr; 1539a23d5eceSKris Buschelman 1540a23d5eceSKris Buschelman PetscFunctionBegin; 1541a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1542a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1543a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1544a23d5eceSKris Buschelman 1545a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1546f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1547d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 15485c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 15495c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 155052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1551a23d5eceSKris Buschelman PetscFunctionReturn(0); 1552a23d5eceSKris Buschelman } 1553a23d5eceSKris Buschelman EXTERN_C_END 1554a23d5eceSKris Buschelman 15550bad9183SKris Buschelman /*MC 155641c8de11SBarry Smith MAT_SOLVER_PLAPACK = "mpidense" - Parallel LU and Cholesky factorization for MATMPIDENSE matrices 15570bad9183SKris Buschelman 155841c8de11SBarry Smith run config/configure.py with the option --download-plapack 15597878bbefSBarry Smith 15607878bbefSBarry Smith 15617878bbefSBarry Smith Options Database Keys: 15627878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition 15637878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition 15647878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector 15657878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size 15667878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag 15677878bbefSBarry Smith 156841c8de11SBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE, PCFactorSetSolverPackage(), MatSolverPackage 156941c8de11SBarry Smith 15700bad9183SKris Buschelman M*/ 15710bad9183SKris Buschelman 1572a23d5eceSKris Buschelman EXTERN_C_BEGIN 1573a23d5eceSKris Buschelman #undef __FUNCT__ 15744a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1575be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1576273d9f13SBarry Smith { 1577273d9f13SBarry Smith Mat_MPIDense *a; 1578dfbe8321SBarry Smith PetscErrorCode ierr; 1579273d9f13SBarry Smith 1580273d9f13SBarry Smith PetscFunctionBegin; 158138f2d2fdSLisandro Dalcin ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1582b0a32e0cSBarry Smith mat->data = (void*)a; 1583273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1584273d9f13SBarry Smith mat->mapping = 0; 1585273d9f13SBarry Smith 1586273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 15877adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 15887adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1589273d9f13SBarry Smith 15907408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(mat->rmap,1);CHKERRQ(ierr); 15917408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(mat->cmap,1);CHKERRQ(ierr); 1592d0f46423SBarry Smith ierr = PetscMapSetUp(mat->rmap);CHKERRQ(ierr); 1593d0f46423SBarry Smith ierr = PetscMapSetUp(mat->cmap);CHKERRQ(ierr); 1594d0f46423SBarry Smith a->nvec = mat->cmap->n; 1595273d9f13SBarry Smith 1596273d9f13SBarry Smith /* build cache for off array entries formed */ 1597273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 15987adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1599273d9f13SBarry Smith 1600273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1601273d9f13SBarry Smith a->lvec = 0; 1602273d9f13SBarry Smith a->Mvctx = 0; 1603273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1604273d9f13SBarry Smith 1605273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1606273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1607273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1608a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1609a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1610a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 16114ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 16124ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 16134ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 16144ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 16154ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 16164ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 16174ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 16184ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 16194ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 16207878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1621b6806ab0SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetFactor_mpidense_plapack_C", 1622b6806ab0SHong Zhang "MatGetFactor_mpidense_plapack", 1623b6806ab0SHong Zhang MatGetFactor_mpidense_plapack);CHKERRQ(ierr); 1624db4efbfdSBarry Smith ierr = PetscPLAPACKInitializePackage(((PetscObject)mat)->comm);CHKERRQ(ierr); 1625db4efbfdSBarry Smith #endif 162638aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 162701b82886SBarry Smith 1628273d9f13SBarry Smith PetscFunctionReturn(0); 1629273d9f13SBarry Smith } 1630273d9f13SBarry Smith EXTERN_C_END 1631273d9f13SBarry Smith 1632209238afSKris Buschelman /*MC 1633002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1634209238afSKris Buschelman 1635209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1636209238afSKris Buschelman and MATMPIDENSE otherwise. 1637209238afSKris Buschelman 1638209238afSKris Buschelman Options Database Keys: 1639209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1640209238afSKris Buschelman 1641209238afSKris Buschelman Level: beginner 1642209238afSKris Buschelman 164301b82886SBarry Smith 1644209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1645209238afSKris Buschelman M*/ 1646209238afSKris Buschelman 1647209238afSKris Buschelman EXTERN_C_BEGIN 1648209238afSKris Buschelman #undef __FUNCT__ 1649209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1650be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1651dfbe8321SBarry Smith { 16526849ba73SBarry Smith PetscErrorCode ierr; 165313f74950SBarry Smith PetscMPIInt size; 1654209238afSKris Buschelman 1655209238afSKris Buschelman PetscFunctionBegin; 16567adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1657209238afSKris Buschelman if (size == 1) { 1658209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1659209238afSKris Buschelman } else { 1660209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1661209238afSKris Buschelman } 1662209238afSKris Buschelman PetscFunctionReturn(0); 1663209238afSKris Buschelman } 1664209238afSKris Buschelman EXTERN_C_END 1665209238afSKris Buschelman 16664a2ae208SSatish Balay #undef __FUNCT__ 16674a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1668273d9f13SBarry Smith /*@C 1669273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1670273d9f13SBarry Smith 1671273d9f13SBarry Smith Not collective 1672273d9f13SBarry Smith 1673273d9f13SBarry Smith Input Parameters: 1674273d9f13SBarry Smith . A - the matrix 1675273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1676273d9f13SBarry Smith to control all matrix memory allocation. 1677273d9f13SBarry Smith 1678273d9f13SBarry Smith Notes: 1679273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1680273d9f13SBarry Smith storage by columns. 1681273d9f13SBarry Smith 1682273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1683273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1684273d9f13SBarry Smith set data=PETSC_NULL. 1685273d9f13SBarry Smith 1686273d9f13SBarry Smith Level: intermediate 1687273d9f13SBarry Smith 1688273d9f13SBarry Smith .keywords: matrix,dense, parallel 1689273d9f13SBarry Smith 1690273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1691273d9f13SBarry Smith @*/ 1692be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1693273d9f13SBarry Smith { 1694dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1695273d9f13SBarry Smith 1696273d9f13SBarry Smith PetscFunctionBegin; 1697565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1698a23d5eceSKris Buschelman if (f) { 1699a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1700a23d5eceSKris Buschelman } 1701273d9f13SBarry Smith PetscFunctionReturn(0); 1702273d9f13SBarry Smith } 1703273d9f13SBarry Smith 17044a2ae208SSatish Balay #undef __FUNCT__ 17054a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 17068965ea79SLois Curfman McInnes /*@C 170739ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 17088965ea79SLois Curfman McInnes 1709db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1710db81eaa0SLois Curfman McInnes 17118965ea79SLois Curfman McInnes Input Parameters: 1712db81eaa0SLois Curfman McInnes + comm - MPI communicator 17138965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1714db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 17158965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1716db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 17177f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1718dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 17198965ea79SLois Curfman McInnes 17208965ea79SLois Curfman McInnes Output Parameter: 1721477f1c0bSLois Curfman McInnes . A - the matrix 17228965ea79SLois Curfman McInnes 1723b259b22eSLois Curfman McInnes Notes: 172439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 172539ddd567SLois Curfman McInnes storage by columns. 17268965ea79SLois Curfman McInnes 172718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 172818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 17297f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 173018f449edSLois Curfman McInnes 17318965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 17328965ea79SLois Curfman McInnes (possibly both). 17338965ea79SLois Curfman McInnes 1734027ccd11SLois Curfman McInnes Level: intermediate 1735027ccd11SLois Curfman McInnes 173639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 17378965ea79SLois Curfman McInnes 173839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 17398965ea79SLois Curfman McInnes @*/ 1740be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 17418965ea79SLois Curfman McInnes { 17426849ba73SBarry Smith PetscErrorCode ierr; 174313f74950SBarry Smith PetscMPIInt size; 17448965ea79SLois Curfman McInnes 17453a40ed3dSBarry Smith PetscFunctionBegin; 1746f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1747f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1748273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1749273d9f13SBarry Smith if (size > 1) { 1750273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1751273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1752273d9f13SBarry Smith } else { 1753273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1754273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 17558c469469SLois Curfman McInnes } 17563a40ed3dSBarry Smith PetscFunctionReturn(0); 17578965ea79SLois Curfman McInnes } 17588965ea79SLois Curfman McInnes 17594a2ae208SSatish Balay #undef __FUNCT__ 17604a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 17616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 17628965ea79SLois Curfman McInnes { 17638965ea79SLois Curfman McInnes Mat mat; 17643501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1765dfbe8321SBarry Smith PetscErrorCode ierr; 17668965ea79SLois Curfman McInnes 17673a40ed3dSBarry Smith PetscFunctionBegin; 17688965ea79SLois Curfman McInnes *newmat = 0; 17697adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1770d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 17717adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1772834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1773e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 17743501a2bdSLois Curfman McInnes mat->factor = A->factor; 1775c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1776273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 17778965ea79SLois Curfman McInnes 1778d0f46423SBarry Smith mat->rmap->rstart = A->rmap->rstart; 1779d0f46423SBarry Smith mat->rmap->rend = A->rmap->rend; 17808965ea79SLois Curfman McInnes a->size = oldmat->size; 17818965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1782e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1783b9b97703SBarry Smith a->nvec = oldmat->nvec; 17843782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1785e04c1aa4SHong Zhang 1786d0f46423SBarry Smith ierr = PetscMemcpy(mat->rmap->range,A->rmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1787d0f46423SBarry Smith ierr = PetscMemcpy(mat->cmap->range,A->cmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 17887adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 17898965ea79SLois Curfman McInnes 1790329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 17915609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 179252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 179301b82886SBarry Smith 17948965ea79SLois Curfman McInnes *newmat = mat; 17953a40ed3dSBarry Smith PetscFunctionReturn(0); 17968965ea79SLois Curfman McInnes } 17978965ea79SLois Curfman McInnes 1798e090d566SSatish Balay #include "petscsys.h" 17998965ea79SLois Curfman McInnes 18004a2ae208SSatish Balay #undef __FUNCT__ 18014a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1802a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, const MatType type,Mat *newmat) 180390ace30eSBarry Smith { 18046849ba73SBarry Smith PetscErrorCode ierr; 180532dcc486SBarry Smith PetscMPIInt rank,size; 180613f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 180787828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 180890ace30eSBarry Smith MPI_Status status; 180990ace30eSBarry Smith 18103a40ed3dSBarry Smith PetscFunctionBegin; 1811d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1812d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 181390ace30eSBarry Smith 181490ace30eSBarry Smith /* determine ownership of all rows */ 181590ace30eSBarry Smith m = M/size + ((M % size) > rank); 181613f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 181713f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 181890ace30eSBarry Smith rowners[0] = 0; 181990ace30eSBarry Smith for (i=2; i<=size; i++) { 182090ace30eSBarry Smith rowners[i] += rowners[i-1]; 182190ace30eSBarry Smith } 182290ace30eSBarry Smith 1823f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1824f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1825be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1826878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 182790ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 182890ace30eSBarry Smith 182990ace30eSBarry Smith if (!rank) { 183087828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 183190ace30eSBarry Smith 183290ace30eSBarry Smith /* read in my part of the matrix numerical values */ 18330752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 183490ace30eSBarry Smith 183590ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 183690ace30eSBarry Smith vals_ptr = vals; 183790ace30eSBarry Smith for (i=0; i<m; i++) { 183890ace30eSBarry Smith for (j=0; j<N; j++) { 183990ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 184090ace30eSBarry Smith } 184190ace30eSBarry Smith } 184290ace30eSBarry Smith 184390ace30eSBarry Smith /* read in other processors and ship out */ 184490ace30eSBarry Smith for (i=1; i<size; i++) { 184590ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 18460752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 18477adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 184890ace30eSBarry Smith } 18493a40ed3dSBarry Smith } else { 185090ace30eSBarry Smith /* receive numeric values */ 185187828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 185290ace30eSBarry Smith 185390ace30eSBarry Smith /* receive message of values*/ 18547adad957SLisandro Dalcin ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 185590ace30eSBarry Smith 185690ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 185790ace30eSBarry Smith vals_ptr = vals; 185890ace30eSBarry Smith for (i=0; i<m; i++) { 185990ace30eSBarry Smith for (j=0; j<N; j++) { 186090ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 186190ace30eSBarry Smith } 186290ace30eSBarry Smith } 186390ace30eSBarry Smith } 1864606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1865606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 18666d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18676d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18683a40ed3dSBarry Smith PetscFunctionReturn(0); 186990ace30eSBarry Smith } 187090ace30eSBarry Smith 18714a2ae208SSatish Balay #undef __FUNCT__ 18724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1873a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense(PetscViewer viewer,const MatType type,Mat *newmat) 18748965ea79SLois Curfman McInnes { 18758965ea79SLois Curfman McInnes Mat A; 187687828ca2SBarry Smith PetscScalar *vals,*svals; 187719bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 18788965ea79SLois Curfman McInnes MPI_Status status; 187913f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 188013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 188113f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 188213f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 188313f74950SBarry Smith int fd; 18846849ba73SBarry Smith PetscErrorCode ierr; 18858965ea79SLois Curfman McInnes 18863a40ed3dSBarry Smith PetscFunctionBegin; 1887d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1888d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18898965ea79SLois Curfman McInnes if (!rank) { 1890b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 18910752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1892552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 18938965ea79SLois Curfman McInnes } 18948965ea79SLois Curfman McInnes 189513f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 189690ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 189790ace30eSBarry Smith 189890ace30eSBarry Smith /* 189990ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 190090ace30eSBarry Smith */ 190190ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1902be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 19033a40ed3dSBarry Smith PetscFunctionReturn(0); 190490ace30eSBarry Smith } 190590ace30eSBarry Smith 19068965ea79SLois Curfman McInnes /* determine ownership of all rows */ 1907e44c0bd4SBarry Smith m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1908e44c0bd4SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1909ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 19108965ea79SLois Curfman McInnes rowners[0] = 0; 19118965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 19128965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 19138965ea79SLois Curfman McInnes } 19148965ea79SLois Curfman McInnes rstart = rowners[rank]; 19158965ea79SLois Curfman McInnes rend = rowners[rank+1]; 19168965ea79SLois Curfman McInnes 19178965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 191813f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 19198965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 19208965ea79SLois Curfman McInnes if (!rank) { 192113f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 19220752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 192313f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 19248965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 19251466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1926606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1927ca161407SBarry Smith } else { 19281466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 19298965ea79SLois Curfman McInnes } 19308965ea79SLois Curfman McInnes 19318965ea79SLois Curfman McInnes if (!rank) { 19328965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 193313f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 193413f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 19358965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19368965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 19378965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 19388965ea79SLois Curfman McInnes } 19398965ea79SLois Curfman McInnes } 1940606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 19418965ea79SLois Curfman McInnes 19428965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 19438965ea79SLois Curfman McInnes maxnz = 0; 19448965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19450452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 19468965ea79SLois Curfman McInnes } 194713f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 19488965ea79SLois Curfman McInnes 19498965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 19508965ea79SLois Curfman McInnes nz = procsnz[0]; 195113f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19520752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 19538965ea79SLois Curfman McInnes 19548965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 19558965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19568965ea79SLois Curfman McInnes nz = procsnz[i]; 19570752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 195813f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 19598965ea79SLois Curfman McInnes } 1960606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 19613a40ed3dSBarry Smith } else { 19628965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 19638965ea79SLois Curfman McInnes nz = 0; 19648965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19658965ea79SLois Curfman McInnes nz += ourlens[i]; 19668965ea79SLois Curfman McInnes } 196713f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19688965ea79SLois Curfman McInnes 19698965ea79SLois Curfman McInnes /* receive message of column indices*/ 197013f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 197113f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 197229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 19738965ea79SLois Curfman McInnes } 19748965ea79SLois Curfman McInnes 19758965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 197613f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 19778965ea79SLois Curfman McInnes jj = 0; 19788965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19798965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 19808965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 19818965ea79SLois Curfman McInnes jj++; 19828965ea79SLois Curfman McInnes } 19838965ea79SLois Curfman McInnes } 19848965ea79SLois Curfman McInnes 19858965ea79SLois Curfman McInnes /* create our matrix */ 19868965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19878965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 19888965ea79SLois Curfman McInnes } 1989f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1990f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1991be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1992878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 19938965ea79SLois Curfman McInnes A = *newmat; 19948965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19958965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 19968965ea79SLois Curfman McInnes } 19978965ea79SLois Curfman McInnes 19988965ea79SLois Curfman McInnes if (!rank) { 199987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 20008965ea79SLois Curfman McInnes 20018965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 20028965ea79SLois Curfman McInnes nz = procsnz[0]; 20030752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 20048965ea79SLois Curfman McInnes 20058965ea79SLois Curfman McInnes /* insert into matrix */ 20068965ea79SLois Curfman McInnes jj = rstart; 20078965ea79SLois Curfman McInnes smycols = mycols; 20088965ea79SLois Curfman McInnes svals = vals; 20098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20108965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 20118965ea79SLois Curfman McInnes smycols += ourlens[i]; 20128965ea79SLois Curfman McInnes svals += ourlens[i]; 20138965ea79SLois Curfman McInnes jj++; 20148965ea79SLois Curfman McInnes } 20158965ea79SLois Curfman McInnes 20168965ea79SLois Curfman McInnes /* read in other processors and ship out */ 20178965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 20188965ea79SLois Curfman McInnes nz = procsnz[i]; 20190752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 20207adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 20218965ea79SLois Curfman McInnes } 2022606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 20233a40ed3dSBarry Smith } else { 20248965ea79SLois Curfman McInnes /* receive numeric values */ 202584d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 20268965ea79SLois Curfman McInnes 20278965ea79SLois Curfman McInnes /* receive message of values*/ 20287adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2029ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 203029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 20318965ea79SLois Curfman McInnes 20328965ea79SLois Curfman McInnes /* insert into matrix */ 20338965ea79SLois Curfman McInnes jj = rstart; 20348965ea79SLois Curfman McInnes smycols = mycols; 20358965ea79SLois Curfman McInnes svals = vals; 20368965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20378965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 20388965ea79SLois Curfman McInnes smycols += ourlens[i]; 20398965ea79SLois Curfman McInnes svals += ourlens[i]; 20408965ea79SLois Curfman McInnes jj++; 20418965ea79SLois Curfman McInnes } 20428965ea79SLois Curfman McInnes } 2043606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 2044606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 2045606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 2046606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 20478965ea79SLois Curfman McInnes 20486d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20496d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20503a40ed3dSBarry Smith PetscFunctionReturn(0); 20518965ea79SLois Curfman McInnes } 205290ace30eSBarry Smith 20536e4ee0c6SHong Zhang #undef __FUNCT__ 20546e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 20556e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 20566e4ee0c6SHong Zhang { 20576e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 20586e4ee0c6SHong Zhang Mat a,b; 20596e4ee0c6SHong Zhang PetscTruth flg; 20606e4ee0c6SHong Zhang PetscErrorCode ierr; 206190ace30eSBarry Smith 20626e4ee0c6SHong Zhang PetscFunctionBegin; 20636e4ee0c6SHong Zhang a = matA->A; 20646e4ee0c6SHong Zhang b = matB->A; 20656e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 20667adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 20676e4ee0c6SHong Zhang PetscFunctionReturn(0); 20686e4ee0c6SHong Zhang } 206990ace30eSBarry Smith 207009d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 207109d27a7eSBarry Smith 207209d27a7eSBarry Smith #undef __FUNCT__ 207309d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage" 207409d27a7eSBarry Smith /*@C 207509d27a7eSBarry Smith PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 207609d27a7eSBarry Smith Level: developer 207709d27a7eSBarry Smith 207809d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK 207909d27a7eSBarry Smith .seealso: PetscFinalize() 208009d27a7eSBarry Smith @*/ 208109d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 208209d27a7eSBarry Smith { 208309d27a7eSBarry Smith PetscErrorCode ierr; 208409d27a7eSBarry Smith 208509d27a7eSBarry Smith PetscFunctionBegin; 208609d27a7eSBarry Smith ierr = PLA_Finalize();CHKERRQ(ierr); 208709d27a7eSBarry Smith PetscFunctionReturn(0); 208809d27a7eSBarry Smith } 208909d27a7eSBarry Smith 209009d27a7eSBarry Smith #undef __FUNCT__ 209109d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage" 209209d27a7eSBarry Smith /*@C 209309d27a7eSBarry Smith PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 2094db4efbfdSBarry Smith called from MatCreate_MPIDense() the first time an MPI dense matrix is called. 209509d27a7eSBarry Smith 209609d27a7eSBarry Smith Input Parameter: 2097db4efbfdSBarry Smith . comm - the communicator the matrix lives on 209809d27a7eSBarry Smith 209909d27a7eSBarry Smith Level: developer 210009d27a7eSBarry Smith 2101db4efbfdSBarry Smith Notes: PLAPACK does not have a good fit with MPI communicators; all (parallel) PLAPACK objects have to live in the 2102db4efbfdSBarry Smith same communicator (because there is some global state that is initialized and used for all matrices). In addition if 2103db4efbfdSBarry Smith PLAPACK is initialized (that is the initial matrices created) are on subcommunicators of MPI_COMM_WORLD, these subcommunicators 2104db4efbfdSBarry Smith cannot overlap. 2105db4efbfdSBarry Smith 210609d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK 210709d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize() 210809d27a7eSBarry Smith @*/ 2109db4efbfdSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(MPI_Comm comm) 211009d27a7eSBarry Smith { 2111eae6fb2eSBarry Smith PetscMPIInt size; 211209d27a7eSBarry Smith PetscErrorCode ierr; 211309d27a7eSBarry Smith 211409d27a7eSBarry Smith PetscFunctionBegin; 211509d27a7eSBarry Smith if (!PLA_Initialized(PETSC_NULL)) { 211609d27a7eSBarry Smith 211709d27a7eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 211804fea9ffSBarry Smith Plapack_nprows = 1; 211904fea9ffSBarry Smith Plapack_npcols = size; 212009d27a7eSBarry Smith 2121aeccfd6fSBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr); 21225d00a290SHong Zhang ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 21235d00a290SHong Zhang ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 212479b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG) 212579b0a62dSBarry Smith Plapack_ierror = 3; 212679b0a62dSBarry Smith #else 212779b0a62dSBarry Smith Plapack_ierror = 0; 212879b0a62dSBarry Smith #endif 21295d00a290SHong Zhang ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr); 2130eae6fb2eSBarry Smith if (Plapack_ierror){ 2131eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 2132aeccfd6fSBarry Smith } else { 2133eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 2134aeccfd6fSBarry Smith } 2135aeccfd6fSBarry Smith 2136eae6fb2eSBarry Smith Plapack_nb_alg = 0; 21375d00a290SHong Zhang ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr); 2138eae6fb2eSBarry Smith if (Plapack_nb_alg) { 2139eae6fb2eSBarry Smith ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr); 2140aeccfd6fSBarry Smith } 2141aeccfd6fSBarry Smith PetscOptionsEnd(); 2142aeccfd6fSBarry Smith 214304fea9ffSBarry Smith ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 214404fea9ffSBarry Smith ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 214509d27a7eSBarry Smith ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 214609d27a7eSBarry Smith } 214709d27a7eSBarry Smith PetscFunctionReturn(0); 214809d27a7eSBarry Smith } 214990ace30eSBarry Smith 215009d27a7eSBarry Smith #endif 2151