1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ba8c8a56SBarry Smith #undef __FUNCT__ 12ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 13ab92ecdeSBarry Smith /*@ 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 16ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Input Parameter: 19ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Output Parameter: 22ab92ecdeSBarry Smith . B - the inner matrix 23ab92ecdeSBarry Smith 248e6c10adSSatish Balay Level: intermediate 258e6c10adSSatish Balay 26ab92ecdeSBarry Smith @*/ 27ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 28ab92ecdeSBarry Smith { 29ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 30ab92ecdeSBarry Smith PetscErrorCode ierr; 31ace3abfcSBarry Smith PetscBool flg; 32ab92ecdeSBarry Smith 33ab92ecdeSBarry Smith PetscFunctionBegin; 34251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 352205254eSKarl Rupp if (flg) *B = mat->A; 362205254eSKarl Rupp else *B = A; 37ab92ecdeSBarry Smith PetscFunctionReturn(0); 38ab92ecdeSBarry Smith } 39ab92ecdeSBarry Smith 40ab92ecdeSBarry Smith #undef __FUNCT__ 41ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 42ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 43ba8c8a56SBarry Smith { 44ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 45ba8c8a56SBarry Smith PetscErrorCode ierr; 46d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 47ba8c8a56SBarry Smith 48ba8c8a56SBarry Smith PetscFunctionBegin; 49e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 50ba8c8a56SBarry Smith lrow = row - rstart; 51ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 52ba8c8a56SBarry Smith PetscFunctionReturn(0); 53ba8c8a56SBarry Smith } 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith #undef __FUNCT__ 56ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 57ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 58ba8c8a56SBarry Smith { 59ba8c8a56SBarry Smith PetscErrorCode ierr; 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith PetscFunctionBegin; 62ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 674a2ae208SSatish Balay #undef __FUNCT__ 684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 700de54da6SSatish Balay { 710de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 726849ba73SBarry Smith PetscErrorCode ierr; 73d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7487828ca2SBarry Smith PetscScalar *array; 750de54da6SSatish Balay MPI_Comm comm; 7611bd1e4dSLisandro Dalcin Mat B; 770de54da6SSatish Balay 780de54da6SSatish Balay PetscFunctionBegin; 79e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 800de54da6SSatish Balay 8111bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin if (!B) { 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 878c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 898c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 994a2ae208SSatish Balay #undef __FUNCT__ 1004a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1028965ea79SLois Curfman McInnes { 10339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 104dfbe8321SBarry Smith PetscErrorCode ierr; 105d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 106ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1078965ea79SLois Curfman McInnes 1083a40ed3dSBarry Smith PetscFunctionBegin; 1098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1105ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 111e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1128965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1138965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11439b7565bSBarry Smith if (roworiented) { 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1163a40ed3dSBarry Smith } else { 1178965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1185ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 119e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12139b7565bSBarry Smith } 1228965ea79SLois Curfman McInnes } 1232205254eSKarl Rupp } else if (!A->donotstash) { 1245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12539b7565bSBarry Smith if (roworiented) { 126b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 127d36fbae8SSatish Balay } else { 128b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12939b7565bSBarry Smith } 130b49de8d1SLois Curfman McInnes } 131b49de8d1SLois Curfman McInnes } 1323a40ed3dSBarry Smith PetscFunctionReturn(0); 133b49de8d1SLois Curfman McInnes } 134b49de8d1SLois Curfman McInnes 1354a2ae208SSatish Balay #undef __FUNCT__ 1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 1594a2ae208SSatish Balay #undef __FUNCT__ 1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 162ff14e315SSatish Balay { 163ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 164dfbe8321SBarry Smith PetscErrorCode ierr; 165ff14e315SSatish Balay 1663a40ed3dSBarry Smith PetscFunctionBegin; 1678c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1683a40ed3dSBarry Smith PetscFunctionReturn(0); 169ff14e315SSatish Balay } 170ff14e315SSatish Balay 1714a2ae208SSatish Balay #undef __FUNCT__ 1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 174ca3fa75bSLois Curfman McInnes { 175ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 176ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1776849ba73SBarry Smith PetscErrorCode ierr; 1784aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1795d0c19d7SBarry Smith const PetscInt *irow,*icol; 18087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 181ca3fa75bSLois Curfman McInnes Mat newmat; 1824aa3045dSJed Brown IS iscol_local; 183ca3fa75bSLois Curfman McInnes 184ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1854aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 186ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1874aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 189b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1904aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 191ca3fa75bSLois Curfman McInnes 192ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1937eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1947eba5e9cSLois Curfman McInnes original matrix! */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1977eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 200ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 201e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2027eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 203ca3fa75bSLois Curfman McInnes newmat = *B; 204ca3fa75bSLois Curfman McInnes } else { 205ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 206ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2074aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2087adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2090298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 210ca3fa75bSLois Curfman McInnes } 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 213ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 214ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 215ca3fa75bSLois Curfman McInnes 2164aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21725a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 218ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2197eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes } 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Free work space */ 228ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2295bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes *B = newmat; 232ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 233ca3fa75bSLois Curfman McInnes } 234ca3fa75bSLois Curfman McInnes 2354a2ae208SSatish Balay #undef __FUNCT__ 2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 238ff14e315SSatish Balay { 23973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24073a71a0fSBarry Smith PetscErrorCode ierr; 24173a71a0fSBarry Smith 2423a40ed3dSBarry Smith PetscFunctionBegin; 2438c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2738965ea79SLois Curfman McInnes { 27439ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27713f74950SBarry Smith PetscMPIInt n; 27887828ca2SBarry Smith PetscScalar *val; 2798965ea79SLois Curfman McInnes 2803a40ed3dSBarry Smith PetscFunctionBegin; 2818965ea79SLois Curfman McInnes /* wait on receives */ 2827ef1d9bdSSatish Balay while (1) { 2838798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2847ef1d9bdSSatish Balay if (!flg) break; 2858965ea79SLois Curfman McInnes 2867ef1d9bdSSatish Balay for (i=0; i<n;) { 2877ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2882205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2892205254eSKarl Rupp if (row[j] != rstart) break; 2902205254eSKarl Rupp } 2917ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2927ef1d9bdSSatish Balay else ncols = n-i; 2937ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2944b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 2957ef1d9bdSSatish Balay i = j; 2968965ea79SLois Curfman McInnes } 2977ef1d9bdSSatish Balay } 2988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2998965ea79SLois Curfman McInnes 30039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 3036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes } 3063a40ed3dSBarry Smith PetscFunctionReturn(0); 3078965ea79SLois Curfman McInnes } 3088965ea79SLois Curfman McInnes 3094a2ae208SSatish Balay #undef __FUNCT__ 3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3128965ea79SLois Curfman McInnes { 313dfbe8321SBarry Smith PetscErrorCode ierr; 31439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3153a40ed3dSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3173a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 3198965ea79SLois Curfman McInnes } 3208965ea79SLois Curfman McInnes 3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3228965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3238965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3243501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3258965ea79SLois Curfman McInnes routine. 3268965ea79SLois Curfman McInnes */ 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3308965ea79SLois Curfman McInnes { 33139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3326849ba73SBarry Smith PetscErrorCode ierr; 333d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33476ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33513f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3367adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33713f74950SBarry Smith PetscInt *lens,*lrows,*values; 33813f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 339ce94432eSBarry Smith MPI_Comm comm; 3408965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3418965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 342ace3abfcSBarry Smith PetscBool found; 34397b48c8fSBarry Smith const PetscScalar *xx; 34497b48c8fSBarry Smith PetscScalar *bb; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 347ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 348ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 349b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3508965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 351f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 352037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3538965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3548965ea79SLois Curfman McInnes idx = rows[i]; 35535d8aa7fSBarry Smith found = PETSC_FALSE; 3568965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3578965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35876ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3598965ea79SLois Curfman McInnes } 3608965ea79SLois Curfman McInnes } 361e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3628965ea79SLois Curfman McInnes } 3632205254eSKarl Rupp nsends = 0; 36476ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36776ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3688965ea79SLois Curfman McInnes 3698965ea79SLois Curfman McInnes /* post receives: */ 370785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 371854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37313f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes } 3758965ea79SLois Curfman McInnes 3768965ea79SLois Curfman McInnes /* do sends: 3778965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3788965ea79SLois Curfman McInnes the ith processor 3798965ea79SLois Curfman McInnes */ 380854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 381854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 382854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3838965ea79SLois Curfman McInnes 3848965ea79SLois Curfman McInnes starts[0] = 0; 38576ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3862205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3872205254eSKarl Rupp 3882205254eSKarl Rupp starts[0] = 0; 38976ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3908965ea79SLois Curfman McInnes count = 0; 3918965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39276ec1555SBarry Smith if (sizes[2*i+1]) { 39376ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3948965ea79SLois Curfman McInnes } 3958965ea79SLois Curfman McInnes } 396606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes base = owners[rank]; 3998965ea79SLois Curfman McInnes 4008965ea79SLois Curfman McInnes /* wait on receives */ 401dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40274ed9c26SBarry Smith count = nrecvs; 40374ed9c26SBarry Smith slen = 0; 4048965ea79SLois Curfman McInnes while (count) { 405ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40713f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4082205254eSKarl Rupp 4098965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4108965ea79SLois Curfman McInnes lens[imdex] = n; 4118965ea79SLois Curfman McInnes slen += n; 4128965ea79SLois Curfman McInnes count--; 4138965ea79SLois Curfman McInnes } 414606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes 4168965ea79SLois Curfman McInnes /* move the data into the send scatter */ 417854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4188965ea79SLois Curfman McInnes count = 0; 4198965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4208965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4218965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4228965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42674ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 427606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42876ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes 43097b48c8fSBarry Smith /* fix right hand side if needed */ 43197b48c8fSBarry Smith if (x && b) { 43297b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43397b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43497b48c8fSBarry Smith for (i=0; i<slen; i++) { 43597b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43697b48c8fSBarry Smith } 43797b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43897b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43997b48c8fSBarry Smith } 44097b48c8fSBarry Smith 4418965ea79SLois Curfman McInnes /* actually zap the local rows */ 442b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 443e2eb51b1SBarry Smith if (diag != 0.0) { 444b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 445b9679d65SBarry Smith PetscInt m = ll->lda, i; 446b9679d65SBarry Smith 447b9679d65SBarry Smith for (i=0; i<slen; i++) { 448b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 449b9679d65SBarry Smith } 450b9679d65SBarry Smith } 451606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4528965ea79SLois Curfman McInnes 4538965ea79SLois Curfman McInnes /* wait on sends */ 4548965ea79SLois Curfman McInnes if (nsends) { 455785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 456ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 457606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes } 459606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 460606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 4628965ea79SLois Curfman McInnes } 4638965ea79SLois Curfman McInnes 4644a2ae208SSatish Balay #undef __FUNCT__ 4654a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 466dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4678965ea79SLois Curfman McInnes { 46839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 469dfbe8321SBarry Smith PetscErrorCode ierr; 470c456f294SBarry Smith 4713a40ed3dSBarry Smith PetscFunctionBegin; 472ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 473ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47444cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4753a40ed3dSBarry Smith PetscFunctionReturn(0); 4768965ea79SLois Curfman McInnes } 4778965ea79SLois Curfman McInnes 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 484c456f294SBarry Smith 4853a40ed3dSBarry Smith PetscFunctionBegin; 486ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 487ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48844cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4893a40ed3dSBarry Smith PetscFunctionReturn(0); 4908965ea79SLois Curfman McInnes } 4918965ea79SLois Curfman McInnes 4924a2ae208SSatish Balay #undef __FUNCT__ 4934a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 494dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 495096963f5SLois Curfman McInnes { 496096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 497dfbe8321SBarry Smith PetscErrorCode ierr; 49887828ca2SBarry Smith PetscScalar zero = 0.0; 499096963f5SLois Curfman McInnes 5003a40ed3dSBarry Smith PetscFunctionBegin; 5012dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5027c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 503ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 504ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5053a40ed3dSBarry Smith PetscFunctionReturn(0); 506096963f5SLois Curfman McInnes } 507096963f5SLois Curfman McInnes 5084a2ae208SSatish Balay #undef __FUNCT__ 5094a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 510dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514096963f5SLois Curfman McInnes 5153a40ed3dSBarry Smith PetscFunctionBegin; 5163501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5177c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 518ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 519ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5203a40ed3dSBarry Smith PetscFunctionReturn(0); 521096963f5SLois Curfman McInnes } 522096963f5SLois Curfman McInnes 5234a2ae208SSatish Balay #undef __FUNCT__ 5244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 525dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5268965ea79SLois Curfman McInnes { 52739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 528096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 529dfbe8321SBarry Smith PetscErrorCode ierr; 530d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 532ed3cc1f0SBarry Smith 5333a40ed3dSBarry Smith PetscFunctionBegin; 5342dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5351ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 536096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 537e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 538d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 539d0f46423SBarry Smith radd = A->rmap->rstart*m; 54044cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 541096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 542096963f5SLois Curfman McInnes } 5431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5443a40ed3dSBarry Smith PetscFunctionReturn(0); 5458965ea79SLois Curfman McInnes } 5468965ea79SLois Curfman McInnes 5474a2ae208SSatish Balay #undef __FUNCT__ 5484a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 549dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5508965ea79SLois Curfman McInnes { 5513501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 552dfbe8321SBarry Smith PetscErrorCode ierr; 553ed3cc1f0SBarry Smith 5543a40ed3dSBarry Smith PetscFunctionBegin; 555aa482453SBarry Smith #if defined(PETSC_USE_LOG) 556d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5578965ea79SLois Curfman McInnes #endif 5588798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5596bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5606bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5616bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56201b82886SBarry Smith 563bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 564dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5658baccfbdSHong Zhang 5668baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5678baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5688baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5698baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5708baccfbdSHong Zhang #endif 571bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 572bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 573bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 574bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 575bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5768baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5778baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5788baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5793a40ed3dSBarry Smith PetscFunctionReturn(0); 5808965ea79SLois Curfman McInnes } 58139ddd567SLois Curfman McInnes 5824a2ae208SSatish Balay #undef __FUNCT__ 5834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5846849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5858965ea79SLois Curfman McInnes { 58639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 587dfbe8321SBarry Smith PetscErrorCode ierr; 588aa05aa95SBarry Smith PetscViewerFormat format; 589aa05aa95SBarry Smith int fd; 590d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 591aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 592578230a0SSatish Balay PetscScalar *work,*v,*vv; 593aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5947056b6fcSBarry Smith 5953a40ed3dSBarry Smith PetscFunctionBegin; 59639ddd567SLois Curfman McInnes if (mdn->size == 1) { 59739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 598aa05aa95SBarry Smith } else { 599aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 600ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 601ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 602aa05aa95SBarry Smith 603aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 604f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 605aa05aa95SBarry Smith 606aa05aa95SBarry Smith if (!rank) { 607aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6080700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 609d0f46423SBarry Smith header[1] = mat->rmap->N; 610aa05aa95SBarry Smith header[2] = N; 611aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 612aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 613aa05aa95SBarry Smith 614aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 615d0f46423SBarry Smith mmax = mat->rmap->n; 616aa05aa95SBarry Smith for (i=1; i<size; i++) { 617d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6188965ea79SLois Curfman McInnes } 619785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 620aa05aa95SBarry Smith 621aa05aa95SBarry Smith /* write out local array, by rows */ 622d0f46423SBarry Smith m = mat->rmap->n; 623aa05aa95SBarry Smith v = a->v; 624aa05aa95SBarry Smith for (j=0; j<N; j++) { 625aa05aa95SBarry Smith for (i=0; i<m; i++) { 626578230a0SSatish Balay work[j + i*N] = *v++; 627aa05aa95SBarry Smith } 628aa05aa95SBarry Smith } 629aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 630aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 631aa05aa95SBarry Smith mmax = 0; 632aa05aa95SBarry Smith for (i=1; i<size; i++) { 633d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 634aa05aa95SBarry Smith } 635785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 636aa05aa95SBarry Smith for (k = 1; k < size; k++) { 637f8009846SMatthew Knepley v = vv; 638d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 639ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 640aa05aa95SBarry Smith 641aa05aa95SBarry Smith for (j = 0; j < N; j++) { 642aa05aa95SBarry Smith for (i = 0; i < m; i++) { 643578230a0SSatish Balay work[j + i*N] = *v++; 644aa05aa95SBarry Smith } 645aa05aa95SBarry Smith } 646aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 647aa05aa95SBarry Smith } 648aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 649578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 650aa05aa95SBarry Smith } else { 651ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 652aa05aa95SBarry Smith } 653eb3f98d2SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)"); 654aa05aa95SBarry Smith } 6553a40ed3dSBarry Smith PetscFunctionReturn(0); 6568965ea79SLois Curfman McInnes } 6578965ea79SLois Curfman McInnes 6587da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6599804daf3SBarry Smith #include <petscdraw.h> 6604a2ae208SSatish Balay #undef __FUNCT__ 6614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6626849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6638965ea79SLois Curfman McInnes { 66439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 665dfbe8321SBarry Smith PetscErrorCode ierr; 6667da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 66719fd82e9SBarry Smith PetscViewerType vtype; 668ace3abfcSBarry Smith PetscBool iascii,isdraw; 669b0a32e0cSBarry Smith PetscViewer sviewer; 670f3ef73ceSBarry Smith PetscViewerFormat format; 6718965ea79SLois Curfman McInnes 6723a40ed3dSBarry Smith PetscFunctionBegin; 673251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 674251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 67532077d6dSBarry Smith if (iascii) { 676b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 677b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 678456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6794e220ebcSLois Curfman McInnes MatInfo info; 680888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6811575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6827b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 683b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6841575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6855d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6863a40ed3dSBarry Smith PetscFunctionReturn(0); 687fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 6898965ea79SLois Curfman McInnes } 690f1af5d2fSBarry Smith } else if (isdraw) { 691b0a32e0cSBarry Smith PetscDraw draw; 692ace3abfcSBarry Smith PetscBool isnull; 693f1af5d2fSBarry Smith 694b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 695b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 696f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 697f1af5d2fSBarry Smith } 69877ed5343SBarry Smith 6997da1fb6eSBarry Smith { 7008965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7018965ea79SLois Curfman McInnes Mat A; 702d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 703ba8c8a56SBarry Smith PetscInt *cols; 704ba8c8a56SBarry Smith PetscScalar *vals; 7058965ea79SLois Curfman McInnes 706ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7078965ea79SLois Curfman McInnes if (!rank) { 708f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7093a40ed3dSBarry Smith } else { 710f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7118965ea79SLois Curfman McInnes } 7127adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 713878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7140298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7153bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7168965ea79SLois Curfman McInnes 71739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71839ddd567SLois Curfman McInnes but it's quick for now */ 71951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7202205254eSKarl Rupp 7212205254eSKarl Rupp row = mat->rmap->rstart; 7222205254eSKarl Rupp m = mdn->A->rmap->n; 7238965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 724ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 725ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 726ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72739ddd567SLois Curfman McInnes row++; 7288965ea79SLois Curfman McInnes } 7298965ea79SLois Curfman McInnes 7306d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7316d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7323f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 733b9b97703SBarry Smith if (!rank) { 7347da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes } 7363f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 737b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7386bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7398965ea79SLois Curfman McInnes } 7403a40ed3dSBarry Smith PetscFunctionReturn(0); 7418965ea79SLois Curfman McInnes } 7428965ea79SLois Curfman McInnes 7434a2ae208SSatish Balay #undef __FUNCT__ 7444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 745dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7468965ea79SLois Curfman McInnes { 747dfbe8321SBarry Smith PetscErrorCode ierr; 748ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7498965ea79SLois Curfman McInnes 750433994e6SBarry Smith PetscFunctionBegin; 751251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 752251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 753251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 754251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7550f5bd95cSBarry Smith 75632077d6dSBarry Smith if (iascii || issocket || isdraw) { 757f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7580f5bd95cSBarry Smith } else if (isbinary) { 7593a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 76011aeaf0aSBarry Smith } 7613a40ed3dSBarry Smith PetscFunctionReturn(0); 7628965ea79SLois Curfman McInnes } 7638965ea79SLois Curfman McInnes 7644a2ae208SSatish Balay #undef __FUNCT__ 7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7678965ea79SLois Curfman McInnes { 7683501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7693501a2bdSLois Curfman McInnes Mat mdn = mat->A; 770dfbe8321SBarry Smith PetscErrorCode ierr; 771329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 7744e220ebcSLois Curfman McInnes info->block_size = 1.0; 7752205254eSKarl Rupp 7764e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7772205254eSKarl Rupp 7784e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7794e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7808965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7814e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7824e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7834e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7844e220ebcSLois Curfman McInnes info->memory = isend[3]; 7854e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7868965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 787ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7882205254eSKarl Rupp 7894e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7904e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7914e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7924e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7934e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7948965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 795ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7962205254eSKarl Rupp 7974e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7984e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7994e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8004e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8014e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8028965ea79SLois Curfman McInnes } 8034e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8044e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8054e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 811ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8128965ea79SLois Curfman McInnes { 81339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 8158965ea79SLois Curfman McInnes 8163a40ed3dSBarry Smith PetscFunctionBegin; 81712c028f9SKris Buschelman switch (op) { 818512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8214e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82212c028f9SKris Buschelman break; 82312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8244e0d8c25SBarry Smith a->roworiented = flg; 8252205254eSKarl Rupp 8264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82712c028f9SKris Buschelman break; 8284e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 831290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83212c028f9SKris Buschelman break; 83312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8344e0d8c25SBarry Smith a->donotstash = flg; 83512c028f9SKris Buschelman break; 83677e54ba9SKris Buschelman case MAT_SYMMETRIC: 83777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8389a4540c5SBarry Smith case MAT_HERMITIAN: 8399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 840600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 841290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84277e54ba9SKris Buschelman break; 84312c028f9SKris Buschelman default: 844e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8453a40ed3dSBarry Smith } 8463a40ed3dSBarry Smith PetscFunctionReturn(0); 8478965ea79SLois Curfman McInnes } 8488965ea79SLois Curfman McInnes 8498965ea79SLois Curfman McInnes 8504a2ae208SSatish Balay #undef __FUNCT__ 8514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 852dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8535b2fa520SLois Curfman McInnes { 8545b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8555b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85687828ca2SBarry Smith PetscScalar *l,*r,x,*v; 857dfbe8321SBarry Smith PetscErrorCode ierr; 858d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8595b2fa520SLois Curfman McInnes 8605b2fa520SLois Curfman McInnes PetscFunctionBegin; 86172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8625b2fa520SLois Curfman McInnes if (ll) { 86372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 864e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8651ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8665b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8675b2fa520SLois Curfman McInnes x = l[i]; 8685b2fa520SLois Curfman McInnes v = mat->v + i; 8695b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8705b2fa520SLois Curfman McInnes } 8711ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 872efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8735b2fa520SLois Curfman McInnes } 8745b2fa520SLois Curfman McInnes if (rr) { 875175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 876e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 877ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8805b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8815b2fa520SLois Curfman McInnes x = r[i]; 8825b2fa520SLois Curfman McInnes v = mat->v + i*m; 8832205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8845b2fa520SLois Curfman McInnes } 8851ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 886efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8875b2fa520SLois Curfman McInnes } 8885b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8895b2fa520SLois Curfman McInnes } 8905b2fa520SLois Curfman McInnes 8914a2ae208SSatish Balay #undef __FUNCT__ 8924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 893dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 894096963f5SLois Curfman McInnes { 8953501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8963501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 897dfbe8321SBarry Smith PetscErrorCode ierr; 89813f74950SBarry Smith PetscInt i,j; 899329f5518SBarry Smith PetscReal sum = 0.0; 90087828ca2SBarry Smith PetscScalar *v = mat->v; 9013501a2bdSLois Curfman McInnes 9023a40ed3dSBarry Smith PetscFunctionBegin; 9033501a2bdSLois Curfman McInnes if (mdn->size == 1) { 904064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9053501a2bdSLois Curfman McInnes } else { 9063501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 907d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 908329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9093501a2bdSLois Curfman McInnes } 910ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9118f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 912dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9133a40ed3dSBarry Smith } else if (type == NORM_1) { 914329f5518SBarry Smith PetscReal *tmp,*tmp2; 915dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 91674ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 91774ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 918064f8208SBarry Smith *nrm = 0.0; 9193501a2bdSLois Curfman McInnes v = mat->v; 920d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 921d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92267e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9233501a2bdSLois Curfman McInnes } 9243501a2bdSLois Curfman McInnes } 925ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 926d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 927064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9283501a2bdSLois Curfman McInnes } 9298627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 930d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9313a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 932329f5518SBarry Smith PetscReal ntemp; 9333501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 934ce94432eSBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 935ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9363501a2bdSLois Curfman McInnes } 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 9383501a2bdSLois Curfman McInnes } 9393501a2bdSLois Curfman McInnes 9404a2ae208SSatish Balay #undef __FUNCT__ 9414a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 942fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9433501a2bdSLois Curfman McInnes { 9443501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9453501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9463501a2bdSLois Curfman McInnes Mat B; 947d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9486849ba73SBarry Smith PetscErrorCode ierr; 94913f74950SBarry Smith PetscInt j,i; 95087828ca2SBarry Smith PetscScalar *v; 9513501a2bdSLois Curfman McInnes 9523a40ed3dSBarry Smith PetscFunctionBegin; 953ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 954fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 955ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 956d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9577adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9580298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 959fc4dec0aSBarry Smith } else { 960fc4dec0aSBarry Smith B = *matout; 961fc4dec0aSBarry Smith } 9623501a2bdSLois Curfman McInnes 963d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 964785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9653501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9661acff37aSSatish Balay for (j=0; j<n; j++) { 9673501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9683501a2bdSLois Curfman McInnes v += m; 9693501a2bdSLois Curfman McInnes } 970606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9716d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9726d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 973815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9743501a2bdSLois Curfman McInnes *matout = B; 9753501a2bdSLois Curfman McInnes } else { 97628be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9773501a2bdSLois Curfman McInnes } 9783a40ed3dSBarry Smith PetscFunctionReturn(0); 979096963f5SLois Curfman McInnes } 980096963f5SLois Curfman McInnes 98144cd7ae7SLois Curfman McInnes 9826849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 983d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9848965ea79SLois Curfman McInnes 9854a2ae208SSatish Balay #undef __FUNCT__ 9864994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9874994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 988273d9f13SBarry Smith { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990273d9f13SBarry Smith 991273d9f13SBarry Smith PetscFunctionBegin; 992273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 993273d9f13SBarry Smith PetscFunctionReturn(0); 994273d9f13SBarry Smith } 995273d9f13SBarry Smith 99630716080SHong Zhang #undef __FUNCT__ 997488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 998488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 999488007eeSBarry Smith { 1000488007eeSBarry Smith PetscErrorCode ierr; 1001488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1002488007eeSBarry Smith 1003488007eeSBarry Smith PetscFunctionBegin; 1004488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1005a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1006488007eeSBarry Smith PetscFunctionReturn(0); 1007488007eeSBarry Smith } 1008488007eeSBarry Smith 1009ba337c44SJed Brown #undef __FUNCT__ 1010ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10117087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1012ba337c44SJed Brown { 1013ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1014ba337c44SJed Brown PetscErrorCode ierr; 1015ba337c44SJed Brown 1016ba337c44SJed Brown PetscFunctionBegin; 1017ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1018ba337c44SJed Brown PetscFunctionReturn(0); 1019ba337c44SJed Brown } 1020ba337c44SJed Brown 1021ba337c44SJed Brown #undef __FUNCT__ 1022ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1023ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1024ba337c44SJed Brown { 1025ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1026ba337c44SJed Brown PetscErrorCode ierr; 1027ba337c44SJed Brown 1028ba337c44SJed Brown PetscFunctionBegin; 1029ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1030ba337c44SJed Brown PetscFunctionReturn(0); 1031ba337c44SJed Brown } 1032ba337c44SJed Brown 1033ba337c44SJed Brown #undef __FUNCT__ 1034ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1035ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1036ba337c44SJed Brown { 1037ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1038ba337c44SJed Brown PetscErrorCode ierr; 1039ba337c44SJed Brown 1040ba337c44SJed Brown PetscFunctionBegin; 1041ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1042ba337c44SJed Brown PetscFunctionReturn(0); 1043ba337c44SJed Brown } 1044ba337c44SJed Brown 10450716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10460716a85fSBarry Smith #undef __FUNCT__ 10470716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10480716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10490716a85fSBarry Smith { 10500716a85fSBarry Smith PetscErrorCode ierr; 10510716a85fSBarry Smith PetscInt i,n; 10520716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10530716a85fSBarry Smith PetscReal *work; 10540716a85fSBarry Smith 10550716a85fSBarry Smith PetscFunctionBegin; 10560298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1057785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10580716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10590716a85fSBarry Smith if (type == NORM_2) { 10600716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10610716a85fSBarry Smith } 10620716a85fSBarry Smith if (type == NORM_INFINITY) { 10630716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10640716a85fSBarry Smith } else { 10650716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10660716a85fSBarry Smith } 10670716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10680716a85fSBarry Smith if (type == NORM_2) { 10698f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10700716a85fSBarry Smith } 10710716a85fSBarry Smith PetscFunctionReturn(0); 10720716a85fSBarry Smith } 10730716a85fSBarry Smith 107473a71a0fSBarry Smith #undef __FUNCT__ 107573a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 107673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 107773a71a0fSBarry Smith { 107873a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 107973a71a0fSBarry Smith PetscErrorCode ierr; 108073a71a0fSBarry Smith PetscScalar *a; 108173a71a0fSBarry Smith PetscInt m,n,i; 108273a71a0fSBarry Smith 108373a71a0fSBarry Smith PetscFunctionBegin; 108473a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10858c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 108673a71a0fSBarry Smith for (i=0; i<m*n; i++) { 108773a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 108873a71a0fSBarry Smith } 10898c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 109073a71a0fSBarry Smith PetscFunctionReturn(0); 109173a71a0fSBarry Smith } 109273a71a0fSBarry Smith 1093fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1094fd4e9aacSBarry Smith 10953b49f96aSBarry Smith #undef __FUNCT__ 10963b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPIDense" 10973b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10983b49f96aSBarry Smith { 10993b49f96aSBarry Smith PetscFunctionBegin; 11003b49f96aSBarry Smith *missing = PETSC_FALSE; 11013b49f96aSBarry Smith PetscFunctionReturn(0); 11023b49f96aSBarry Smith } 11033b49f96aSBarry Smith 11048965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 110509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 110609dc0095SBarry Smith MatGetRow_MPIDense, 110709dc0095SBarry Smith MatRestoreRow_MPIDense, 110809dc0095SBarry Smith MatMult_MPIDense, 110997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11107c922b88SBarry Smith MatMultTranspose_MPIDense, 11117c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11128965ea79SLois Curfman McInnes 0, 111309dc0095SBarry Smith 0, 111409dc0095SBarry Smith 0, 111597304618SKris Buschelman /* 10*/ 0, 111609dc0095SBarry Smith 0, 111709dc0095SBarry Smith 0, 111809dc0095SBarry Smith 0, 111909dc0095SBarry Smith MatTranspose_MPIDense, 112097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11216e4ee0c6SHong Zhang MatEqual_MPIDense, 112209dc0095SBarry Smith MatGetDiagonal_MPIDense, 11235b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 112409dc0095SBarry Smith MatNorm_MPIDense, 112597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 112609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 112709dc0095SBarry Smith MatSetOption_MPIDense, 112809dc0095SBarry Smith MatZeroEntries_MPIDense, 1129d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1130919b68f7SBarry Smith 0, 113101b82886SBarry Smith 0, 113201b82886SBarry Smith 0, 113301b82886SBarry Smith 0, 11344994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1135273d9f13SBarry Smith 0, 113609dc0095SBarry Smith 0, 11378c778c55SBarry Smith 0, 11388c778c55SBarry Smith 0, 1139d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 114009dc0095SBarry Smith 0, 114109dc0095SBarry Smith 0, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 1144d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11452ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 114609dc0095SBarry Smith 0, 114709dc0095SBarry Smith MatGetValues_MPIDense, 114809dc0095SBarry Smith 0, 1149d519adbfSMatthew Knepley /* 44*/ 0, 115009dc0095SBarry Smith MatScale_MPIDense, 11517d68702bSBarry Smith MatShift_Basic, 115209dc0095SBarry Smith 0, 115309dc0095SBarry Smith 0, 115473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 115509dc0095SBarry Smith 0, 115609dc0095SBarry Smith 0, 115709dc0095SBarry Smith 0, 115809dc0095SBarry Smith 0, 1159d519adbfSMatthew Knepley /* 54*/ 0, 116009dc0095SBarry Smith 0, 116109dc0095SBarry Smith 0, 116209dc0095SBarry Smith 0, 116309dc0095SBarry Smith 0, 1164d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1165b9b97703SBarry Smith MatDestroy_MPIDense, 1166b9b97703SBarry Smith MatView_MPIDense, 1167357abbc8SBarry Smith 0, 116897304618SKris Buschelman 0, 1169d519adbfSMatthew Knepley /* 64*/ 0, 117097304618SKris Buschelman 0, 117197304618SKris Buschelman 0, 117297304618SKris Buschelman 0, 117397304618SKris Buschelman 0, 1174d519adbfSMatthew Knepley /* 69*/ 0, 117597304618SKris Buschelman 0, 117697304618SKris Buschelman 0, 117797304618SKris Buschelman 0, 117897304618SKris Buschelman 0, 1179d519adbfSMatthew Knepley /* 74*/ 0, 118097304618SKris Buschelman 0, 118197304618SKris Buschelman 0, 118297304618SKris Buschelman 0, 118397304618SKris Buschelman 0, 1184d519adbfSMatthew Knepley /* 79*/ 0, 118597304618SKris Buschelman 0, 118697304618SKris Buschelman 0, 118797304618SKris Buschelman 0, 11885bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1189865e5f61SKris Buschelman 0, 1190865e5f61SKris Buschelman 0, 1191865e5f61SKris Buschelman 0, 1192865e5f61SKris Buschelman 0, 1193865e5f61SKris Buschelman 0, 11949775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1195320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1196320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 11979775878aSHong Zhang #else 11989775878aSHong Zhang /* 89*/ 0, 11999775878aSHong Zhang 0, 12009775878aSHong Zhang #endif 1201fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 12022fbe02b9SBarry Smith 0, 1203ba337c44SJed Brown 0, 1204d519adbfSMatthew Knepley /* 94*/ 0, 1205865e5f61SKris Buschelman 0, 1206865e5f61SKris Buschelman 0, 1207ba337c44SJed Brown 0, 1208ba337c44SJed Brown 0, 1209ba337c44SJed Brown /* 99*/ 0, 1210ba337c44SJed Brown 0, 1211ba337c44SJed Brown 0, 1212ba337c44SJed Brown MatConjugate_MPIDense, 1213ba337c44SJed Brown 0, 1214ba337c44SJed Brown /*104*/ 0, 1215ba337c44SJed Brown MatRealPart_MPIDense, 1216ba337c44SJed Brown MatImaginaryPart_MPIDense, 121786d161a7SShri Abhyankar 0, 121886d161a7SShri Abhyankar 0, 121986d161a7SShri Abhyankar /*109*/ 0, 122086d161a7SShri Abhyankar 0, 122186d161a7SShri Abhyankar 0, 122286d161a7SShri Abhyankar 0, 12233b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 122486d161a7SShri Abhyankar /*114*/ 0, 122586d161a7SShri Abhyankar 0, 122686d161a7SShri Abhyankar 0, 122786d161a7SShri Abhyankar 0, 122886d161a7SShri Abhyankar 0, 122986d161a7SShri Abhyankar /*119*/ 0, 123086d161a7SShri Abhyankar 0, 123186d161a7SShri Abhyankar 0, 12320716a85fSBarry Smith 0, 12330716a85fSBarry Smith 0, 12340716a85fSBarry Smith /*124*/ 0, 12353964eb88SJed Brown MatGetColumnNorms_MPIDense, 12363964eb88SJed Brown 0, 12373964eb88SJed Brown 0, 12383964eb88SJed Brown 0, 12393964eb88SJed Brown /*129*/ 0, 1240cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1241cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1242cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12433964eb88SJed Brown 0, 12443964eb88SJed Brown /*134*/ 0, 12453964eb88SJed Brown 0, 12463964eb88SJed Brown 0, 12473964eb88SJed Brown 0, 12483964eb88SJed Brown 0, 12493964eb88SJed Brown /*139*/ 0, 1250f9426fe0SMark Adams 0, 12513964eb88SJed Brown 0 1252ba337c44SJed Brown }; 12538965ea79SLois Curfman McInnes 12544a2ae208SSatish Balay #undef __FUNCT__ 1255a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12567087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1257a23d5eceSKris Buschelman { 1258a23d5eceSKris Buschelman Mat_MPIDense *a; 1259dfbe8321SBarry Smith PetscErrorCode ierr; 1260a23d5eceSKris Buschelman 1261a23d5eceSKris Buschelman PetscFunctionBegin; 1262a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1263a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1264a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1265a23d5eceSKris Buschelman 1266a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 126734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 126834ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 126934ef9618SShri Abhyankar a->nvec = mat->cmap->n; 127034ef9618SShri Abhyankar 1271f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1272d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12735c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12745c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1276a23d5eceSKris Buschelman PetscFunctionReturn(0); 1277a23d5eceSKris Buschelman } 1278a23d5eceSKris Buschelman 127965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1280a23d5eceSKris Buschelman #undef __FUNCT__ 12818baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental" 12828baccfbdSHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12838baccfbdSHong Zhang { 12848ea901baSHong Zhang Mat mat_elemental; 12858ea901baSHong Zhang PetscErrorCode ierr; 128665b80a83SHong Zhang PetscScalar *array,*v_rowwise; 12878ea901baSHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,j,k,*rows,*cols; 12888ea901baSHong Zhang 12898baccfbdSHong Zhang PetscFunctionBegin; 1290378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1291378336b6SHong Zhang mat_elemental = *newmat; 1292378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1293378336b6SHong Zhang } else { 1294378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1295378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1296378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1297378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 1298378336b6SHong Zhang } 1299378336b6SHong Zhang 1300378336b6SHong Zhang /* convert column-wise array into row-wise v_rowwise, see MatSetValues_Elemental() */ 130165b80a83SHong Zhang ierr = PetscMalloc3(m*N,&v_rowwise,m,&rows,N,&cols);CHKERRQ(ierr); 13028ea901baSHong Zhang ierr = MatDenseGetArray(A,&array);CHKERRQ(ierr); 13038ea901baSHong Zhang k = 0; 13048ea901baSHong Zhang for (j=0; j<N; j++) { 13058ea901baSHong Zhang cols[j] = j; 13068ea901baSHong Zhang for (i=0; i<m; i++) { 130765b80a83SHong Zhang v_rowwise[i*N+j] = array[k++]; 13088ea901baSHong Zhang } 13098ea901baSHong Zhang } 13108ea901baSHong Zhang for (i=0; i<m; i++) { 13118ea901baSHong Zhang rows[i] = rstart + i; 13128ea901baSHong Zhang } 13138ea901baSHong Zhang ierr = MatDenseRestoreArray(A,&array);CHKERRQ(ierr); 13148ea901baSHong Zhang 13158ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 131665b80a83SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v_rowwise,ADD_VALUES);CHKERRQ(ierr); 13178ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13188ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 131965b80a83SHong Zhang ierr = PetscFree3(v_rowwise,rows,cols);CHKERRQ(ierr); 13208ea901baSHong Zhang 1321511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 132228be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13238ea901baSHong Zhang } else { 13248ea901baSHong Zhang *newmat = mat_elemental; 13258ea901baSHong Zhang } 13268baccfbdSHong Zhang PetscFunctionReturn(0); 13278baccfbdSHong Zhang } 132865b80a83SHong Zhang #endif 13298baccfbdSHong Zhang 13308baccfbdSHong Zhang #undef __FUNCT__ 13314a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 13328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1333273d9f13SBarry Smith { 1334273d9f13SBarry Smith Mat_MPIDense *a; 1335dfbe8321SBarry Smith PetscErrorCode ierr; 1336273d9f13SBarry Smith 1337273d9f13SBarry Smith PetscFunctionBegin; 1338b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1339b0a32e0cSBarry Smith mat->data = (void*)a; 1340273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1341273d9f13SBarry Smith 1342273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1343ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1344ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1345273d9f13SBarry Smith 1346273d9f13SBarry Smith /* build cache for off array entries formed */ 1347273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13482205254eSKarl Rupp 1349ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1350273d9f13SBarry Smith 1351273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1352273d9f13SBarry Smith a->lvec = 0; 1353273d9f13SBarry Smith a->Mvctx = 0; 1354273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1355273d9f13SBarry Smith 1356bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1357bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13588baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13598baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13608baccfbdSHong Zhang #endif 1361bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1362bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1363bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1364bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1365bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13668949adfdSHong Zhang 13678949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13688949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13698949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 137038aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1371273d9f13SBarry Smith PetscFunctionReturn(0); 1372273d9f13SBarry Smith } 1373273d9f13SBarry Smith 1374209238afSKris Buschelman /*MC 1375002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1376209238afSKris Buschelman 1377209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1378209238afSKris Buschelman and MATMPIDENSE otherwise. 1379209238afSKris Buschelman 1380209238afSKris Buschelman Options Database Keys: 1381209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1382209238afSKris Buschelman 1383209238afSKris Buschelman Level: beginner 1384209238afSKris Buschelman 138501b82886SBarry Smith 1386209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1387209238afSKris Buschelman M*/ 1388209238afSKris Buschelman 13894a2ae208SSatish Balay #undef __FUNCT__ 13904a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1391273d9f13SBarry Smith /*@C 1392273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1393273d9f13SBarry Smith 1394273d9f13SBarry Smith Not collective 1395273d9f13SBarry Smith 1396273d9f13SBarry Smith Input Parameters: 13971c4f3114SJed Brown . B - the matrix 13980298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1399273d9f13SBarry Smith to control all matrix memory allocation. 1400273d9f13SBarry Smith 1401273d9f13SBarry Smith Notes: 1402273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1403273d9f13SBarry Smith storage by columns. 1404273d9f13SBarry Smith 1405273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1406273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14070298fd71SBarry Smith set data=NULL. 1408273d9f13SBarry Smith 1409273d9f13SBarry Smith Level: intermediate 1410273d9f13SBarry Smith 1411273d9f13SBarry Smith .keywords: matrix,dense, parallel 1412273d9f13SBarry Smith 1413273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1414273d9f13SBarry Smith @*/ 14151c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1416273d9f13SBarry Smith { 14174ac538c5SBarry Smith PetscErrorCode ierr; 1418273d9f13SBarry Smith 1419273d9f13SBarry Smith PetscFunctionBegin; 14201c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1421273d9f13SBarry Smith PetscFunctionReturn(0); 1422273d9f13SBarry Smith } 1423273d9f13SBarry Smith 14244a2ae208SSatish Balay #undef __FUNCT__ 142569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 14268965ea79SLois Curfman McInnes /*@C 142769b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14288965ea79SLois Curfman McInnes 1429db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1430db81eaa0SLois Curfman McInnes 14318965ea79SLois Curfman McInnes Input Parameters: 1432db81eaa0SLois Curfman McInnes + comm - MPI communicator 14338965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1434db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14358965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1436db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14376cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1438dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14398965ea79SLois Curfman McInnes 14408965ea79SLois Curfman McInnes Output Parameter: 1441477f1c0bSLois Curfman McInnes . A - the matrix 14428965ea79SLois Curfman McInnes 1443b259b22eSLois Curfman McInnes Notes: 144439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 144539ddd567SLois Curfman McInnes storage by columns. 14468965ea79SLois Curfman McInnes 144718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 144818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14496cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 145018f449edSLois Curfman McInnes 14518965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14528965ea79SLois Curfman McInnes (possibly both). 14538965ea79SLois Curfman McInnes 1454027ccd11SLois Curfman McInnes Level: intermediate 1455027ccd11SLois Curfman McInnes 145639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14578965ea79SLois Curfman McInnes 145839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14598965ea79SLois Curfman McInnes @*/ 146069b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14618965ea79SLois Curfman McInnes { 14626849ba73SBarry Smith PetscErrorCode ierr; 146313f74950SBarry Smith PetscMPIInt size; 14648965ea79SLois Curfman McInnes 14653a40ed3dSBarry Smith PetscFunctionBegin; 1466f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1467f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1468273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1469273d9f13SBarry Smith if (size > 1) { 1470273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1471273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14726cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 14736cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 14746cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 14756cfe35ddSJose E. Roman } 1476273d9f13SBarry Smith } else { 1477273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1478273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14798c469469SLois Curfman McInnes } 14803a40ed3dSBarry Smith PetscFunctionReturn(0); 14818965ea79SLois Curfman McInnes } 14828965ea79SLois Curfman McInnes 14834a2ae208SSatish Balay #undef __FUNCT__ 14844a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14856849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14868965ea79SLois Curfman McInnes { 14878965ea79SLois Curfman McInnes Mat mat; 14883501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1489dfbe8321SBarry Smith PetscErrorCode ierr; 14908965ea79SLois Curfman McInnes 14913a40ed3dSBarry Smith PetscFunctionBegin; 14928965ea79SLois Curfman McInnes *newmat = 0; 1493ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1494d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14957adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1496834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1497e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14985aa7edbeSHong Zhang 1499d5f3da31SBarry Smith mat->factortype = A->factortype; 1500c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1501273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15028965ea79SLois Curfman McInnes 15038965ea79SLois Curfman McInnes a->size = oldmat->size; 15048965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1505e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1506b9b97703SBarry Smith a->nvec = oldmat->nvec; 15073782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1508e04c1aa4SHong Zhang 15091e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15101e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15118965ea79SLois Curfman McInnes 1512329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15135609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15143bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 151501b82886SBarry Smith 15168965ea79SLois Curfman McInnes *newmat = mat; 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15188965ea79SLois Curfman McInnes } 15198965ea79SLois Curfman McInnes 15204a2ae208SSatish Balay #undef __FUNCT__ 15215bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 15229d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 152386d161a7SShri Abhyankar { 152486d161a7SShri Abhyankar PetscErrorCode ierr; 152586d161a7SShri Abhyankar PetscMPIInt rank,size; 152674c13d95SBarry Smith const PetscInt *rowners; 152774c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 152886d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 15299d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 153086d161a7SShri Abhyankar 153186d161a7SShri Abhyankar PetscFunctionBegin; 153286d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 153386d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 153486d161a7SShri Abhyankar 153574c13d95SBarry Smith /* determine ownership of rows and columns */ 153674c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 153774c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 153886d161a7SShri Abhyankar 153974c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 15409d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 15410298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15429d36ed5fSBarry Smith } 15438c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 154449467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 154574c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1546396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 154786d161a7SShri Abhyankar if (!rank) { 15489d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 154986d161a7SShri Abhyankar 155086d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 155186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 155286d161a7SShri Abhyankar 155386d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 155486d161a7SShri Abhyankar vals_ptr = vals; 155586d161a7SShri Abhyankar for (i=0; i<m; i++) { 155686d161a7SShri Abhyankar for (j=0; j<N; j++) { 155786d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 155886d161a7SShri Abhyankar } 155986d161a7SShri Abhyankar } 156086d161a7SShri Abhyankar 156186d161a7SShri Abhyankar /* read in other processors and ship out */ 156286d161a7SShri Abhyankar for (i=1; i<size; i++) { 156386d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 156486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1565a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 156686d161a7SShri Abhyankar } 156786d161a7SShri Abhyankar } else { 156886d161a7SShri Abhyankar /* receive numeric values */ 1569785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 157086d161a7SShri Abhyankar 157186d161a7SShri Abhyankar /* receive message of values*/ 1572a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 157386d161a7SShri Abhyankar 157486d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 157586d161a7SShri Abhyankar vals_ptr = vals; 157686d161a7SShri Abhyankar for (i=0; i<m; i++) { 157786d161a7SShri Abhyankar for (j=0; j<N; j++) { 157886d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 157986d161a7SShri Abhyankar } 158086d161a7SShri Abhyankar } 158186d161a7SShri Abhyankar } 15828c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 158386d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 158486d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158586d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158686d161a7SShri Abhyankar PetscFunctionReturn(0); 158786d161a7SShri Abhyankar } 158886d161a7SShri Abhyankar 158986d161a7SShri Abhyankar #undef __FUNCT__ 15905bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1591112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 159286d161a7SShri Abhyankar { 1593dfdea288SBarry Smith Mat_MPIDense *a; 159486d161a7SShri Abhyankar PetscScalar *vals,*svals; 1595ce94432eSBarry Smith MPI_Comm comm; 159686d161a7SShri Abhyankar MPI_Status status; 159749467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 159886d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 159949467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 16009d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 160186d161a7SShri Abhyankar int fd; 160286d161a7SShri Abhyankar PetscErrorCode ierr; 160386d161a7SShri Abhyankar 160486d161a7SShri Abhyankar PetscFunctionBegin; 1605c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1606c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1607ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 160886d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 160986d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 161086d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16115872f025SBarry Smith if (!rank) { 161286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 161386d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 161486d161a7SShri Abhyankar } 161586d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 161686d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 161786d161a7SShri Abhyankar 161886d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16199d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16209d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 162186d161a7SShri Abhyankar 16229d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 16239d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 162486d161a7SShri Abhyankar 162586d161a7SShri Abhyankar /* 162686d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 162786d161a7SShri Abhyankar */ 162886d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16299d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 163086d161a7SShri Abhyankar PetscFunctionReturn(0); 163186d161a7SShri Abhyankar } 163286d161a7SShri Abhyankar 163386d161a7SShri Abhyankar /* determine ownership of all rows */ 16342205254eSKarl Rupp if (newmat->rmap->n < 0) { 16352205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16362205254eSKarl Rupp } else { 16372205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16382205254eSKarl Rupp } 163949467e7dSBarry Smith if (newmat->cmap->n < 0) { 164049467e7dSBarry Smith n = PETSC_DECIDE; 164149467e7dSBarry Smith } else { 164249467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 164349467e7dSBarry Smith } 164449467e7dSBarry Smith 1645854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 164686d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 164786d161a7SShri Abhyankar rowners[0] = 0; 164886d161a7SShri Abhyankar for (i=2; i<=size; i++) { 164986d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 165086d161a7SShri Abhyankar } 165186d161a7SShri Abhyankar rstart = rowners[rank]; 165286d161a7SShri Abhyankar rend = rowners[rank+1]; 165386d161a7SShri Abhyankar 165486d161a7SShri Abhyankar /* distribute row lengths to all processors */ 165549467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 165686d161a7SShri Abhyankar if (!rank) { 1657785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 165886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1659785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 166086d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 166186d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 166286d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 166386d161a7SShri Abhyankar } else { 166486d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 166586d161a7SShri Abhyankar } 166686d161a7SShri Abhyankar 166786d161a7SShri Abhyankar if (!rank) { 166886d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1669785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 167086d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 167186d161a7SShri Abhyankar for (i=0; i<size; i++) { 167286d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 167386d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 167486d161a7SShri Abhyankar } 167586d161a7SShri Abhyankar } 167686d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 167786d161a7SShri Abhyankar 167886d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 167986d161a7SShri Abhyankar maxnz = 0; 168086d161a7SShri Abhyankar for (i=0; i<size; i++) { 168186d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 168286d161a7SShri Abhyankar } 1683785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 168486d161a7SShri Abhyankar 168586d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 168686d161a7SShri Abhyankar nz = procsnz[0]; 1687785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 168886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 168986d161a7SShri Abhyankar 169086d161a7SShri Abhyankar /* read in every one elses and ship off */ 169186d161a7SShri Abhyankar for (i=1; i<size; i++) { 169286d161a7SShri Abhyankar nz = procsnz[i]; 169386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 169486d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 169586d161a7SShri Abhyankar } 169686d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 169786d161a7SShri Abhyankar } else { 169886d161a7SShri Abhyankar /* determine buffer space needed for message */ 169986d161a7SShri Abhyankar nz = 0; 170086d161a7SShri Abhyankar for (i=0; i<m; i++) { 170186d161a7SShri Abhyankar nz += ourlens[i]; 170286d161a7SShri Abhyankar } 1703854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 170486d161a7SShri Abhyankar 170586d161a7SShri Abhyankar /* receive message of column indices*/ 170686d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 170786d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 170886d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 170986d161a7SShri Abhyankar } 171086d161a7SShri Abhyankar 171149467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1712dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17132e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17140298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1715dfdea288SBarry Smith } 171686d161a7SShri Abhyankar 171786d161a7SShri Abhyankar if (!rank) { 1718785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 171986d161a7SShri Abhyankar 172086d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 172186d161a7SShri Abhyankar nz = procsnz[0]; 172286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 172386d161a7SShri Abhyankar 172486d161a7SShri Abhyankar /* insert into matrix */ 172586d161a7SShri Abhyankar jj = rstart; 172686d161a7SShri Abhyankar smycols = mycols; 172786d161a7SShri Abhyankar svals = vals; 172886d161a7SShri Abhyankar for (i=0; i<m; i++) { 172986d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 173086d161a7SShri Abhyankar smycols += ourlens[i]; 173186d161a7SShri Abhyankar svals += ourlens[i]; 173286d161a7SShri Abhyankar jj++; 173386d161a7SShri Abhyankar } 173486d161a7SShri Abhyankar 173586d161a7SShri Abhyankar /* read in other processors and ship out */ 173686d161a7SShri Abhyankar for (i=1; i<size; i++) { 173786d161a7SShri Abhyankar nz = procsnz[i]; 173886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173986d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 174086d161a7SShri Abhyankar } 174186d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 174286d161a7SShri Abhyankar } else { 174386d161a7SShri Abhyankar /* receive numeric values */ 1744854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 174586d161a7SShri Abhyankar 174686d161a7SShri Abhyankar /* receive message of values*/ 174786d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 174886d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 174986d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 175086d161a7SShri Abhyankar 175186d161a7SShri Abhyankar /* insert into matrix */ 175286d161a7SShri Abhyankar jj = rstart; 175386d161a7SShri Abhyankar smycols = mycols; 175486d161a7SShri Abhyankar svals = vals; 175586d161a7SShri Abhyankar for (i=0; i<m; i++) { 175686d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 175786d161a7SShri Abhyankar smycols += ourlens[i]; 175886d161a7SShri Abhyankar svals += ourlens[i]; 175986d161a7SShri Abhyankar jj++; 176086d161a7SShri Abhyankar } 176186d161a7SShri Abhyankar } 176249467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 176386d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 176486d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 176586d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 176686d161a7SShri Abhyankar 176786d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176886d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176986d161a7SShri Abhyankar PetscFunctionReturn(0); 177086d161a7SShri Abhyankar } 177186d161a7SShri Abhyankar 177286d161a7SShri Abhyankar #undef __FUNCT__ 17736e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1774ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17756e4ee0c6SHong Zhang { 17766e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17776e4ee0c6SHong Zhang Mat a,b; 1778ace3abfcSBarry Smith PetscBool flg; 17796e4ee0c6SHong Zhang PetscErrorCode ierr; 178090ace30eSBarry Smith 17816e4ee0c6SHong Zhang PetscFunctionBegin; 17826e4ee0c6SHong Zhang a = matA->A; 17836e4ee0c6SHong Zhang b = matB->A; 17846e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1785ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17866e4ee0c6SHong Zhang PetscFunctionReturn(0); 17876e4ee0c6SHong Zhang } 178890ace30eSBarry Smith 1789cb20be35SHong Zhang #undef __FUNCT__ 1790baa3c1c6SHong Zhang #define __FUNCT__ "MatDestroy_MatTransMatMult_MPIDense_MPIDense" 1791baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1792baa3c1c6SHong Zhang { 1793baa3c1c6SHong Zhang PetscErrorCode ierr; 1794baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1795baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1796baa3c1c6SHong Zhang 1797baa3c1c6SHong Zhang PetscFunctionBegin; 1798c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1799baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1800baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1801baa3c1c6SHong Zhang PetscFunctionReturn(0); 1802baa3c1c6SHong Zhang } 1803baa3c1c6SHong Zhang 1804baa3c1c6SHong Zhang #undef __FUNCT__ 1805cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultNumeric_MPIDense_MPIDense" 1806cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1807cb20be35SHong Zhang { 1808baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1809660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1810baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1811cb20be35SHong Zhang PetscErrorCode ierr; 1812cb20be35SHong Zhang MPI_Comm comm; 1813d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1814c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1815d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1816660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1817adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1818e68c0b26SHong Zhang const PetscInt *ranges; 1819cb20be35SHong Zhang 1820cb20be35SHong Zhang PetscFunctionBegin; 1821cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1822cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1823cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1824e68c0b26SHong Zhang 1825c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1826660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1827660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1828660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1829adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1830adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1831cb20be35SHong Zhang 1832cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1833c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1834cb20be35SHong Zhang 1835660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1836cb20be35SHong Zhang k = 0; 1837cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1838baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1839c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1840cb20be35SHong Zhang } 1841cb20be35SHong Zhang } 1842c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1843660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 18443462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1845660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1846cb20be35SHong Zhang PetscFunctionReturn(0); 1847cb20be35SHong Zhang } 1848cb20be35SHong Zhang 1849cb20be35SHong Zhang #undef __FUNCT__ 1850cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultSymbolic_MPIDense_MPIDense" 1851cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1852cb20be35SHong Zhang { 1853cb20be35SHong Zhang PetscErrorCode ierr; 1854baa3c1c6SHong Zhang Mat Cdense; 1855cb20be35SHong Zhang MPI_Comm comm; 1856baa3c1c6SHong Zhang PetscMPIInt size; 1857660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1858baa3c1c6SHong Zhang Mat_MPIDense *c; 1859baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1860cb20be35SHong Zhang 1861cb20be35SHong Zhang PetscFunctionBegin; 1862baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1863cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1864cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1865cb20be35SHong Zhang } 1866cb20be35SHong Zhang 1867baa3c1c6SHong Zhang /* create matrix product Cdense */ 1868baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1869660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1870baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1871baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1872baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1873baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1874baa3c1c6SHong Zhang *C = Cdense; 1875baa3c1c6SHong Zhang 1876baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1877baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1878baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1879660d5466SHong Zhang cM = Cdense->rmap->N; 1880c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1881baa3c1c6SHong Zhang 1882baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1883baa3c1c6SHong Zhang c->atbdense = atb; 1884baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1885baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1886cb20be35SHong Zhang PetscFunctionReturn(0); 1887cb20be35SHong Zhang } 1888cb20be35SHong Zhang 1889cb20be35SHong Zhang #undef __FUNCT__ 1890cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMult_MPIDense_MPIDense" 1891cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1892cb20be35SHong Zhang { 1893cb20be35SHong Zhang PetscErrorCode ierr; 1894cb20be35SHong Zhang 1895cb20be35SHong Zhang PetscFunctionBegin; 1896cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1897cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1898cb20be35SHong Zhang } 1899cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1900cb20be35SHong Zhang PetscFunctionReturn(0); 1901cb20be35SHong Zhang } 1902320f2790SHong Zhang 1903320f2790SHong Zhang #undef __FUNCT__ 1904320f2790SHong Zhang #define __FUNCT__ "MatDestroy_MatMatMult_MPIDense_MPIDense" 1905320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1906320f2790SHong Zhang { 1907320f2790SHong Zhang PetscErrorCode ierr; 1908320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1909320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1910320f2790SHong Zhang 1911320f2790SHong Zhang PetscFunctionBegin; 1912320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1913320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1914320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1915320f2790SHong Zhang 1916320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1917320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1918320f2790SHong Zhang PetscFunctionReturn(0); 1919320f2790SHong Zhang } 1920320f2790SHong Zhang 19215242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1922320f2790SHong Zhang #undef __FUNCT__ 1923320f2790SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 1924320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1925320f2790SHong Zhang { 1926320f2790SHong Zhang PetscErrorCode ierr; 1927320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1928320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1929320f2790SHong Zhang 1930320f2790SHong Zhang PetscFunctionBegin; 1931*de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1932*de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1933320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1934*de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1935320f2790SHong Zhang PetscFunctionReturn(0); 1936320f2790SHong Zhang } 1937320f2790SHong Zhang 1938320f2790SHong Zhang #undef __FUNCT__ 1939320f2790SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 1940320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1941320f2790SHong Zhang { 1942320f2790SHong Zhang PetscErrorCode ierr; 1943320f2790SHong Zhang Mat Ae,Be,Ce; 1944320f2790SHong Zhang Mat_MPIDense *c; 1945320f2790SHong Zhang Mat_MatMultDense *ab; 1946320f2790SHong Zhang 1947320f2790SHong Zhang PetscFunctionBegin; 1948320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1949378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1950320f2790SHong Zhang } 1951320f2790SHong Zhang 1952320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 1953320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 1954320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 1955320f2790SHong Zhang 1956320f2790SHong Zhang /* Ce = Ae*Be */ 1957320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 1958320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 1959320f2790SHong Zhang 1960320f2790SHong Zhang /* convert Ce to C */ 1961320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 1962320f2790SHong Zhang 1963320f2790SHong Zhang /* create data structure for reuse Cdense */ 1964320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 1965320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 1966320f2790SHong Zhang c->abdense = ab; 1967320f2790SHong Zhang 1968320f2790SHong Zhang ab->Ae = Ae; 1969320f2790SHong Zhang ab->Be = Be; 1970320f2790SHong Zhang ab->Ce = Ce; 1971320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 1972320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19739775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 1974320f2790SHong Zhang PetscFunctionReturn(0); 1975320f2790SHong Zhang } 1976320f2790SHong Zhang 1977320f2790SHong Zhang #undef __FUNCT__ 1978320f2790SHong Zhang #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 1979320f2790SHong Zhang PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1980320f2790SHong Zhang { 1981320f2790SHong Zhang PetscErrorCode ierr; 1982320f2790SHong Zhang 1983320f2790SHong Zhang PetscFunctionBegin; 1984320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 1985320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1986320f2790SHong Zhang } else { 1987320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1988320f2790SHong Zhang } 1989320f2790SHong Zhang PetscFunctionReturn(0); 1990320f2790SHong Zhang } 19915242a7b1SHong Zhang #endif 1992