xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision e0fa3b825b7e7f2c5f4f9b72794af5e0547fcd94)
18965ea79SLois Curfman McInnes #ifndef lint
2*e0fa3b82SLois Curfman McInnes static char vcid[] = "$Id: mpidense.c,v 1.64 1997/01/27 18:16:33 bsmith Exp bsmith $";
38965ea79SLois Curfman McInnes #endif
48965ea79SLois Curfman McInnes 
5ed3cc1f0SBarry Smith /*
6ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
7ed3cc1f0SBarry Smith */
8ed3cc1f0SBarry Smith 
970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"
10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
118965ea79SLois Curfman McInnes 
125615d1e5SSatish Balay #undef __FUNC__
135615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense"
147056b6fcSBarry Smith static int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv)
158965ea79SLois Curfman McInnes {
1639b7565bSBarry Smith   Mat_MPIDense *A = (Mat_MPIDense *) mat->data;
1739b7565bSBarry Smith   int          ierr, i, j, rstart = A->rstart, rend = A->rend, row;
1839b7565bSBarry Smith   int          roworiented = A->roworiented;
198965ea79SLois Curfman McInnes 
208965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
21e3372554SBarry Smith     if (idxm[i] < 0) SETERRQ(1,0,"Negative row");
22e3372554SBarry Smith     if (idxm[i] >= A->M) SETERRQ(1,0,"Row too large");
238965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
248965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
2539b7565bSBarry Smith       if (roworiented) {
2639b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr);
2739b7565bSBarry Smith       }
2839b7565bSBarry Smith       else {
298965ea79SLois Curfman McInnes         for ( j=0; j<n; j++ ) {
30e3372554SBarry Smith           if (idxn[j] < 0) SETERRQ(1,0,"Negative column");
31e3372554SBarry Smith           if (idxn[j] >= A->N) SETERRQ(1,0,"Column too large");
3239b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr);
3339b7565bSBarry Smith         }
348965ea79SLois Curfman McInnes       }
358965ea79SLois Curfman McInnes     }
368965ea79SLois Curfman McInnes     else {
3739b7565bSBarry Smith       if (roworiented) {
3839b7565bSBarry Smith         ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr);
3939b7565bSBarry Smith       }
4039b7565bSBarry Smith       else { /* must stash each seperately */
4139b7565bSBarry Smith         row = idxm[i];
4239b7565bSBarry Smith         for ( j=0; j<n; j++ ) {
437056b6fcSBarry Smith           ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
4439b7565bSBarry Smith         }
4539b7565bSBarry Smith       }
46b49de8d1SLois Curfman McInnes     }
47b49de8d1SLois Curfman McInnes   }
48b49de8d1SLois Curfman McInnes   return 0;
49b49de8d1SLois Curfman McInnes }
50b49de8d1SLois Curfman McInnes 
515615d1e5SSatish Balay #undef __FUNC__
525615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense"
53b49de8d1SLois Curfman McInnes static int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
54b49de8d1SLois Curfman McInnes {
55b49de8d1SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
56b49de8d1SLois Curfman McInnes   int          ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row;
57b49de8d1SLois Curfman McInnes 
58b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
59e3372554SBarry Smith     if (idxm[i] < 0) SETERRQ(1,0,"Negative row");
60e3372554SBarry Smith     if (idxm[i] >= mdn->M) SETERRQ(1,0,"Row too large");
61b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
62b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
63b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
64e3372554SBarry Smith         if (idxn[j] < 0) SETERRQ(1,0,"Negative column");
65b49de8d1SLois Curfman McInnes         if (idxn[j] >= mdn->N)
66e3372554SBarry Smith           SETERRQ(1,0,"Column too large");
67b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr);
68b49de8d1SLois Curfman McInnes       }
69b49de8d1SLois Curfman McInnes     }
70b49de8d1SLois Curfman McInnes     else {
71e3372554SBarry Smith       SETERRQ(1,0,"Only local values currently supported");
728965ea79SLois Curfman McInnes     }
738965ea79SLois Curfman McInnes   }
748965ea79SLois Curfman McInnes   return 0;
758965ea79SLois Curfman McInnes }
768965ea79SLois Curfman McInnes 
775615d1e5SSatish Balay #undef __FUNC__
785615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense"
79ff14e315SSatish Balay static int MatGetArray_MPIDense(Mat A,Scalar **array)
80ff14e315SSatish Balay {
81ff14e315SSatish Balay   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
82ff14e315SSatish Balay   int ierr;
83ff14e315SSatish Balay 
84ff14e315SSatish Balay   ierr = MatGetArray(a->A,array); CHKERRQ(ierr);
85ff14e315SSatish Balay   return 0;
86ff14e315SSatish Balay }
87ff14e315SSatish Balay 
885615d1e5SSatish Balay #undef __FUNC__
895615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense"
90ff14e315SSatish Balay static int MatRestoreArray_MPIDense(Mat A,Scalar **array)
91ff14e315SSatish Balay {
92ff14e315SSatish Balay   return 0;
93ff14e315SSatish Balay }
94ff14e315SSatish Balay 
955615d1e5SSatish Balay #undef __FUNC__
965615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense"
9739ddd567SLois Curfman McInnes static int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
988965ea79SLois Curfman McInnes {
9939ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1008965ea79SLois Curfman McInnes   MPI_Comm     comm = mat->comm;
10139ddd567SLois Curfman McInnes   int          size = mdn->size, *owners = mdn->rowners, rank = mdn->rank;
1028965ea79SLois Curfman McInnes   int          *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
10339ddd567SLois Curfman McInnes   int          tag = mat->tag, *owner,*starts,count,ierr;
1048965ea79SLois Curfman McInnes   InsertMode   addv;
10539ddd567SLois Curfman McInnes   MPI_Request  *send_waits,*recv_waits;
1068965ea79SLois Curfman McInnes   Scalar       *rvalues,*svalues;
1078965ea79SLois Curfman McInnes 
1088965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
109*e0fa3b82SLois Curfman McInnes   MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
1107056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
111e3372554SBarry Smith     SETERRQ(1,0,"Cannot mix adds/inserts on different procs");
1128965ea79SLois Curfman McInnes   }
113*e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
1148965ea79SLois Curfman McInnes 
1158965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
1160452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
117cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
1180452661fSBarry Smith   owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
11939ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
12039ddd567SLois Curfman McInnes     idx = mdn->stash.idx[i];
1218965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1228965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
1238965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1248965ea79SLois Curfman McInnes       }
1258965ea79SLois Curfman McInnes     }
1268965ea79SLois Curfman McInnes   }
1278965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1288965ea79SLois Curfman McInnes 
1298965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
1300452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
1316d84be18SBarry Smith   MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm);
1328965ea79SLois Curfman McInnes   nreceives = work[rank];
133e3372554SBarry Smith   if (nreceives > size) SETERRQ(1,0,"Internal PETSc error");
1346d84be18SBarry Smith   MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm);
1358965ea79SLois Curfman McInnes   nmax = work[rank];
1360452661fSBarry Smith   PetscFree(work);
1378965ea79SLois Curfman McInnes 
1388965ea79SLois Curfman McInnes   /* post receives:
1398965ea79SLois Curfman McInnes        1) each message will consist of ordered pairs
1408965ea79SLois Curfman McInnes      (global index,value) we store the global index as a double
1418965ea79SLois Curfman McInnes      to simplify the message passing.
1428965ea79SLois Curfman McInnes        2) since we don't know how long each individual message is we
1438965ea79SLois Curfman McInnes      allocate the largest needed buffer for each receive. Potentially
1448965ea79SLois Curfman McInnes      this is a lot of wasted space.
1458965ea79SLois Curfman McInnes 
1468965ea79SLois Curfman McInnes        This could be done better.
1478965ea79SLois Curfman McInnes   */
1483b2fbd54SBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
1493b2fbd54SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
1508965ea79SLois Curfman McInnes   for ( i=0; i<nreceives; i++ ) {
1517056b6fcSBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
1528965ea79SLois Curfman McInnes   }
1538965ea79SLois Curfman McInnes 
1548965ea79SLois Curfman McInnes   /* do sends:
1558965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
1568965ea79SLois Curfman McInnes          the ith processor
1578965ea79SLois Curfman McInnes   */
1583b2fbd54SBarry Smith   svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
1593b2fbd54SBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
1600452661fSBarry Smith   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
1618965ea79SLois Curfman McInnes   starts[0] = 0;
1628965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16339ddd567SLois Curfman McInnes   for ( i=0; i<mdn->stash.n; i++ ) {
16439ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]]       = (Scalar)  mdn->stash.idx[i];
16539ddd567SLois Curfman McInnes     svalues[3*starts[owner[i]]+1]     = (Scalar)  mdn->stash.idy[i];
16639ddd567SLois Curfman McInnes     svalues[3*(starts[owner[i]]++)+2] =  mdn->stash.array[i];
1678965ea79SLois Curfman McInnes   }
1680452661fSBarry Smith   PetscFree(owner);
1698965ea79SLois Curfman McInnes   starts[0] = 0;
1708965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1718965ea79SLois Curfman McInnes   count = 0;
1728965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1738965ea79SLois Curfman McInnes     if (procs[i]) {
1747056b6fcSBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);
1758965ea79SLois Curfman McInnes     }
1768965ea79SLois Curfman McInnes   }
1770452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
1788965ea79SLois Curfman McInnes 
1798965ea79SLois Curfman McInnes   /* Free cache space */
180d2dc9b81SLois Curfman McInnes   PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n);
18139ddd567SLois Curfman McInnes   ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr);
1828965ea79SLois Curfman McInnes 
18339ddd567SLois Curfman McInnes   mdn->svalues    = svalues;    mdn->rvalues = rvalues;
18439ddd567SLois Curfman McInnes   mdn->nsends     = nsends;     mdn->nrecvs = nreceives;
18539ddd567SLois Curfman McInnes   mdn->send_waits = send_waits; mdn->recv_waits = recv_waits;
18639ddd567SLois Curfman McInnes   mdn->rmax       = nmax;
1878965ea79SLois Curfman McInnes 
1888965ea79SLois Curfman McInnes   return 0;
1898965ea79SLois Curfman McInnes }
19039ddd567SLois Curfman McInnes extern int MatSetUpMultiply_MPIDense(Mat);
1918965ea79SLois Curfman McInnes 
1925615d1e5SSatish Balay #undef __FUNC__
1935615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense"
19439ddd567SLois Curfman McInnes static int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
1958965ea79SLois Curfman McInnes {
19639ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1978965ea79SLois Curfman McInnes   MPI_Status   *send_status,recv_status;
19839ddd567SLois Curfman McInnes   int          imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col;
1998965ea79SLois Curfman McInnes   Scalar       *values,val;
200*e0fa3b82SLois Curfman McInnes   InsertMode   addv = mat->insertmode;
2018965ea79SLois Curfman McInnes 
2028965ea79SLois Curfman McInnes   /*  wait on receives */
2038965ea79SLois Curfman McInnes   while (count) {
20439ddd567SLois Curfman McInnes     MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status);
2058965ea79SLois Curfman McInnes     /* unpack receives into our local space */
20639ddd567SLois Curfman McInnes     values = mdn->rvalues + 3*imdex*mdn->rmax;
2078965ea79SLois Curfman McInnes     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2088965ea79SLois Curfman McInnes     n = n/3;
2098965ea79SLois Curfman McInnes     for ( i=0; i<n; i++ ) {
210227d817aSBarry Smith       row = (int) PetscReal(values[3*i]) - mdn->rstart;
211227d817aSBarry Smith       col = (int) PetscReal(values[3*i+1]);
2128965ea79SLois Curfman McInnes       val = values[3*i+2];
21339ddd567SLois Curfman McInnes       if (col >= 0 && col < mdn->N) {
21439ddd567SLois Curfman McInnes         MatSetValues(mdn->A,1,&row,1,&col,&val,addv);
2158965ea79SLois Curfman McInnes       }
216e3372554SBarry Smith       else {SETERRQ(1,0,"Invalid column");}
2178965ea79SLois Curfman McInnes     }
2188965ea79SLois Curfman McInnes     count--;
2198965ea79SLois Curfman McInnes   }
2200452661fSBarry Smith   PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues);
2218965ea79SLois Curfman McInnes 
2228965ea79SLois Curfman McInnes   /* wait on sends */
22339ddd567SLois Curfman McInnes   if (mdn->nsends) {
2247056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
22539ddd567SLois Curfman McInnes     MPI_Waitall(mdn->nsends,mdn->send_waits,send_status);
2260452661fSBarry Smith     PetscFree(send_status);
2278965ea79SLois Curfman McInnes   }
2280452661fSBarry Smith   PetscFree(mdn->send_waits); PetscFree(mdn->svalues);
2298965ea79SLois Curfman McInnes 
23039ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr);
23139ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr);
2328965ea79SLois Curfman McInnes 
2336d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
23439ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr);
2358965ea79SLois Curfman McInnes   }
2368965ea79SLois Curfman McInnes   return 0;
2378965ea79SLois Curfman McInnes }
2388965ea79SLois Curfman McInnes 
2395615d1e5SSatish Balay #undef __FUNC__
2405615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense"
24139ddd567SLois Curfman McInnes static int MatZeroEntries_MPIDense(Mat A)
2428965ea79SLois Curfman McInnes {
24339ddd567SLois Curfman McInnes   Mat_MPIDense *l = (Mat_MPIDense *) A->data;
24439ddd567SLois Curfman McInnes   return MatZeroEntries(l->A);
2458965ea79SLois Curfman McInnes }
2468965ea79SLois Curfman McInnes 
2475615d1e5SSatish Balay #undef __FUNC__
2485615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense"
2494e220ebcSLois Curfman McInnes static int MatGetBlockSize_MPIDense(Mat A,int *bs)
2504e220ebcSLois Curfman McInnes {
2514e220ebcSLois Curfman McInnes   *bs = 1;
2524e220ebcSLois Curfman McInnes   return 0;
2534e220ebcSLois Curfman McInnes }
2544e220ebcSLois Curfman McInnes 
2558965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
2568965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
2578965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
2583501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
2598965ea79SLois Curfman McInnes    routine.
2608965ea79SLois Curfman McInnes */
2615615d1e5SSatish Balay #undef __FUNC__
2625615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense"
26339ddd567SLois Curfman McInnes static int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag)
2648965ea79SLois Curfman McInnes {
26539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense *) A->data;
2668965ea79SLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2678965ea79SLois Curfman McInnes   int            *procs,*nprocs,j,found,idx,nsends,*work;
2688965ea79SLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2698965ea79SLois Curfman McInnes   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
2708965ea79SLois Curfman McInnes   int            *lens,imdex,*lrows,*values;
2718965ea79SLois Curfman McInnes   MPI_Comm       comm = A->comm;
2728965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
2738965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
2748965ea79SLois Curfman McInnes   IS             istmp;
2758965ea79SLois Curfman McInnes 
27677c4ece6SBarry Smith   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
2778965ea79SLois Curfman McInnes   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2788965ea79SLois Curfman McInnes 
2798965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
2800452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
281cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
2820452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2838965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
2848965ea79SLois Curfman McInnes     idx = rows[i];
2858965ea79SLois Curfman McInnes     found = 0;
2868965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2878965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
2888965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2898965ea79SLois Curfman McInnes       }
2908965ea79SLois Curfman McInnes     }
291e3372554SBarry Smith     if (!found) SETERRQ(1,0,"Index out of range");
2928965ea79SLois Curfman McInnes   }
2938965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
2948965ea79SLois Curfman McInnes 
2958965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
2960452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
2978965ea79SLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
2988965ea79SLois Curfman McInnes   nrecvs = work[rank];
2998965ea79SLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
3008965ea79SLois Curfman McInnes   nmax = work[rank];
3010452661fSBarry Smith   PetscFree(work);
3028965ea79SLois Curfman McInnes 
3038965ea79SLois Curfman McInnes   /* post receives:   */
3040452661fSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
3058965ea79SLois Curfman McInnes   CHKPTRQ(rvalues);
3060452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));
3078965ea79SLois Curfman McInnes   CHKPTRQ(recv_waits);
3088965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3098965ea79SLois Curfman McInnes     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3108965ea79SLois Curfman McInnes   }
3118965ea79SLois Curfman McInnes 
3128965ea79SLois Curfman McInnes   /* do sends:
3138965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3148965ea79SLois Curfman McInnes          the ith processor
3158965ea79SLois Curfman McInnes   */
3160452661fSBarry Smith   svalues    = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
3177056b6fcSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
3180452661fSBarry Smith   starts     = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3198965ea79SLois Curfman McInnes   starts[0]  = 0;
3208965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3218965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
3228965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3238965ea79SLois Curfman McInnes   }
3248965ea79SLois Curfman McInnes   ISRestoreIndices(is,&rows);
3258965ea79SLois Curfman McInnes 
3268965ea79SLois Curfman McInnes   starts[0] = 0;
3278965ea79SLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3288965ea79SLois Curfman McInnes   count = 0;
3298965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3308965ea79SLois Curfman McInnes     if (procs[i]) {
3318965ea79SLois Curfman McInnes       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3328965ea79SLois Curfman McInnes     }
3338965ea79SLois Curfman McInnes   }
3340452661fSBarry Smith   PetscFree(starts);
3358965ea79SLois Curfman McInnes 
3368965ea79SLois Curfman McInnes   base = owners[rank];
3378965ea79SLois Curfman McInnes 
3388965ea79SLois Curfman McInnes   /*  wait on receives */
3390452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3408965ea79SLois Curfman McInnes   source = lens + nrecvs;
3418965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
3428965ea79SLois Curfman McInnes   while (count) {
3438965ea79SLois Curfman McInnes     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3448965ea79SLois Curfman McInnes     /* unpack receives into our local space */
3458965ea79SLois Curfman McInnes     MPI_Get_count(&recv_status,MPI_INT,&n);
3468965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
3478965ea79SLois Curfman McInnes     lens[imdex]  = n;
3488965ea79SLois Curfman McInnes     slen += n;
3498965ea79SLois Curfman McInnes     count--;
3508965ea79SLois Curfman McInnes   }
3510452661fSBarry Smith   PetscFree(recv_waits);
3528965ea79SLois Curfman McInnes 
3538965ea79SLois Curfman McInnes   /* move the data into the send scatter */
3540452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3558965ea79SLois Curfman McInnes   count = 0;
3568965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3578965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
3588965ea79SLois Curfman McInnes     for ( j=0; j<lens[i]; j++ ) {
3598965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
3608965ea79SLois Curfman McInnes     }
3618965ea79SLois Curfman McInnes   }
3620452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
3630452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
3648965ea79SLois Curfman McInnes 
3658965ea79SLois Curfman McInnes   /* actually zap the local rows */
366537820f0SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
3678965ea79SLois Curfman McInnes   PLogObjectParent(A,istmp);
3680452661fSBarry Smith   PetscFree(lrows);
3698965ea79SLois Curfman McInnes   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
3708965ea79SLois Curfman McInnes   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3718965ea79SLois Curfman McInnes 
3728965ea79SLois Curfman McInnes   /* wait on sends */
3738965ea79SLois Curfman McInnes   if (nsends) {
3747056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
3758965ea79SLois Curfman McInnes     MPI_Waitall(nsends,send_waits,send_status);
3760452661fSBarry Smith     PetscFree(send_status);
3778965ea79SLois Curfman McInnes   }
3780452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
3798965ea79SLois Curfman McInnes 
3808965ea79SLois Curfman McInnes   return 0;
3818965ea79SLois Curfman McInnes }
3828965ea79SLois Curfman McInnes 
3835615d1e5SSatish Balay #undef __FUNC__
3845615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense"
38539ddd567SLois Curfman McInnes static int MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
3868965ea79SLois Curfman McInnes {
38739ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
3888965ea79SLois Curfman McInnes   int          ierr;
389c456f294SBarry Smith 
39043a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39143a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39244cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr);
3938965ea79SLois Curfman McInnes   return 0;
3948965ea79SLois Curfman McInnes }
3958965ea79SLois Curfman McInnes 
3965615d1e5SSatish Balay #undef __FUNC__
3975615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense"
39839ddd567SLois Curfman McInnes static int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
3998965ea79SLois Curfman McInnes {
40039ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4018965ea79SLois Curfman McInnes   int          ierr;
402c456f294SBarry Smith 
40343a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
40443a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
40544cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr);
4068965ea79SLois Curfman McInnes   return 0;
4078965ea79SLois Curfman McInnes }
4088965ea79SLois Curfman McInnes 
4095615d1e5SSatish Balay #undef __FUNC__
4105615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense"
411096963f5SLois Curfman McInnes static int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy)
412096963f5SLois Curfman McInnes {
413096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
414096963f5SLois Curfman McInnes   int          ierr;
4153501a2bdSLois Curfman McInnes   Scalar       zero = 0.0;
416096963f5SLois Curfman McInnes 
4173501a2bdSLois Curfman McInnes   ierr = VecSet(&zero,yy); CHKERRQ(ierr);
41844cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
419537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
420537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
421096963f5SLois Curfman McInnes   return 0;
422096963f5SLois Curfman McInnes }
423096963f5SLois Curfman McInnes 
4245615d1e5SSatish Balay #undef __FUNC__
4255615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense"
426096963f5SLois Curfman McInnes static int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
427096963f5SLois Curfman McInnes {
428096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
429096963f5SLois Curfman McInnes   int          ierr;
430096963f5SLois Curfman McInnes 
4313501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz); CHKERRQ(ierr);
43244cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
433537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
434537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
435096963f5SLois Curfman McInnes   return 0;
436096963f5SLois Curfman McInnes }
437096963f5SLois Curfman McInnes 
4385615d1e5SSatish Balay #undef __FUNC__
4395615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense"
44039ddd567SLois Curfman McInnes static int MatGetDiagonal_MPIDense(Mat A,Vec v)
4418965ea79SLois Curfman McInnes {
44239ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
443096963f5SLois Curfman McInnes   Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data;
44444cd7ae7SLois Curfman McInnes   int          ierr, len, i, n, m = a->m, radd;
44544cd7ae7SLois Curfman McInnes   Scalar       *x, zero = 0.0;
446ed3cc1f0SBarry Smith 
44744cd7ae7SLois Curfman McInnes   VecSet(&zero,v);
448096963f5SLois Curfman McInnes   ierr = VecGetArray(v,&x); CHKERRQ(ierr);
449096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n); CHKERRQ(ierr);
450e3372554SBarry Smith   if (n != a->M) SETERRQ(1,0,"Nonconforming mat and vec");
45144cd7ae7SLois Curfman McInnes   len = PetscMin(aloc->m,aloc->n);
4527ddc982cSLois Curfman McInnes   radd = a->rstart*m;
45344cd7ae7SLois Curfman McInnes   for ( i=0; i<len; i++ ) {
454096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
455096963f5SLois Curfman McInnes   }
456096963f5SLois Curfman McInnes   return 0;
4578965ea79SLois Curfman McInnes }
4588965ea79SLois Curfman McInnes 
4595615d1e5SSatish Balay #undef __FUNC__
4605615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense"
46139ddd567SLois Curfman McInnes static int MatDestroy_MPIDense(PetscObject obj)
4628965ea79SLois Curfman McInnes {
4638965ea79SLois Curfman McInnes   Mat          mat = (Mat) obj;
4643501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4658965ea79SLois Curfman McInnes   int          ierr;
466ed3cc1f0SBarry Smith 
4678965ea79SLois Curfman McInnes #if defined(PETSC_LOG)
4683501a2bdSLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",mdn->M,mdn->N);
4698965ea79SLois Curfman McInnes #endif
4700452661fSBarry Smith   PetscFree(mdn->rowners);
4713501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A); CHKERRQ(ierr);
4723501a2bdSLois Curfman McInnes   if (mdn->lvec)   VecDestroy(mdn->lvec);
4733501a2bdSLois Curfman McInnes   if (mdn->Mvctx)  VecScatterDestroy(mdn->Mvctx);
474622d7880SLois Curfman McInnes   if (mdn->factor) {
475622d7880SLois Curfman McInnes     if (mdn->factor->temp)   PetscFree(mdn->factor->temp);
476622d7880SLois Curfman McInnes     if (mdn->factor->tag)    PetscFree(mdn->factor->tag);
477622d7880SLois Curfman McInnes     if (mdn->factor->pivots) PetscFree(mdn->factor->pivots);
478622d7880SLois Curfman McInnes     PetscFree(mdn->factor);
479622d7880SLois Curfman McInnes   }
4800452661fSBarry Smith   PetscFree(mdn);
48190f02eecSBarry Smith   if (mat->mapping) {
48290f02eecSBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
48390f02eecSBarry Smith   }
4848965ea79SLois Curfman McInnes   PLogObjectDestroy(mat);
4850452661fSBarry Smith   PetscHeaderDestroy(mat);
4868965ea79SLois Curfman McInnes   return 0;
4878965ea79SLois Curfman McInnes }
48839ddd567SLois Curfman McInnes 
4898965ea79SLois Curfman McInnes #include "pinclude/pviewer.h"
4908965ea79SLois Curfman McInnes 
4915615d1e5SSatish Balay #undef __FUNC__
4925615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary"
49339ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer)
4948965ea79SLois Curfman McInnes {
49539ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4968965ea79SLois Curfman McInnes   int          ierr;
4977056b6fcSBarry Smith 
49839ddd567SLois Curfman McInnes   if (mdn->size == 1) {
49939ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5008965ea79SLois Curfman McInnes   }
501e3372554SBarry Smith   else SETERRQ(1,0,"Only uniprocessor output supported");
5028965ea79SLois Curfman McInnes   return 0;
5038965ea79SLois Curfman McInnes }
5048965ea79SLois Curfman McInnes 
5055615d1e5SSatish Balay #undef __FUNC__
5065615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII"
50739ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer)
5088965ea79SLois Curfman McInnes {
50939ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
51039ddd567SLois Curfman McInnes   int          ierr, format;
5118965ea79SLois Curfman McInnes   FILE         *fd;
51219bcc07fSBarry Smith   ViewerType   vtype;
5138965ea79SLois Curfman McInnes 
51419bcc07fSBarry Smith   ViewerGetType(viewer,&vtype);
51590ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
51690ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
517639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
5184e220ebcSLois Curfman McInnes     int rank;
5194e220ebcSLois Curfman McInnes     MatInfo info;
520096963f5SLois Curfman McInnes     MPI_Comm_rank(mat->comm,&rank);
5214e220ebcSLois Curfman McInnes     ierr = MatGetInfo(mat,MAT_LOCAL,&info);
52277c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
5234e220ebcSLois Curfman McInnes       fprintf(fd,"  [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m,
5244e220ebcSLois Curfman McInnes          (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
525096963f5SLois Curfman McInnes       fflush(fd);
52677c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5273501a2bdSLois Curfman McInnes     ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr);
5283501a2bdSLois Curfman McInnes     return 0;
5293501a2bdSLois Curfman McInnes   }
53002cad45dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_INFO) {
531096963f5SLois Curfman McInnes     return 0;
5328965ea79SLois Curfman McInnes   }
53319bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
53477c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
53539ddd567SLois Curfman McInnes     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n",
53639ddd567SLois Curfman McInnes              mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n);
53739ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5388965ea79SLois Curfman McInnes     fflush(fd);
53977c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5408965ea79SLois Curfman McInnes   }
5418965ea79SLois Curfman McInnes   else {
54239ddd567SLois Curfman McInnes     int size = mdn->size, rank = mdn->rank;
5438965ea79SLois Curfman McInnes     if (size == 1) {
54439ddd567SLois Curfman McInnes       ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
5458965ea79SLois Curfman McInnes     }
5468965ea79SLois Curfman McInnes     else {
5478965ea79SLois Curfman McInnes       /* assemble the entire matrix onto first processor. */
5488965ea79SLois Curfman McInnes       Mat          A;
54939ddd567SLois Curfman McInnes       int          M = mdn->M, N = mdn->N,m,row,i, nz, *cols;
55039ddd567SLois Curfman McInnes       Scalar       *vals;
55139ddd567SLois Curfman McInnes       Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data;
5528965ea79SLois Curfman McInnes 
5538965ea79SLois Curfman McInnes       if (!rank) {
5540513a670SBarry Smith         ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5558965ea79SLois Curfman McInnes       }
5568965ea79SLois Curfman McInnes       else {
5570513a670SBarry Smith         ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
5588965ea79SLois Curfman McInnes       }
5598965ea79SLois Curfman McInnes       PLogObjectParent(mat,A);
5608965ea79SLois Curfman McInnes 
56139ddd567SLois Curfman McInnes       /* Copy the matrix ... This isn't the most efficient means,
56239ddd567SLois Curfman McInnes          but it's quick for now */
56339ddd567SLois Curfman McInnes       row = mdn->rstart; m = Amdn->m;
5648965ea79SLois Curfman McInnes       for ( i=0; i<m; i++ ) {
56539ddd567SLois Curfman McInnes         ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
56639ddd567SLois Curfman McInnes         ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr);
56739ddd567SLois Curfman McInnes         ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
56839ddd567SLois Curfman McInnes         row++;
5698965ea79SLois Curfman McInnes       }
5708965ea79SLois Curfman McInnes 
5716d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5726d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
5738965ea79SLois Curfman McInnes       if (!rank) {
57439ddd567SLois Curfman McInnes         ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr);
5758965ea79SLois Curfman McInnes       }
5768965ea79SLois Curfman McInnes       ierr = MatDestroy(A); CHKERRQ(ierr);
5778965ea79SLois Curfman McInnes     }
5788965ea79SLois Curfman McInnes   }
5798965ea79SLois Curfman McInnes   return 0;
5808965ea79SLois Curfman McInnes }
5818965ea79SLois Curfman McInnes 
5825615d1e5SSatish Balay #undef __FUNC__
5835615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense"
58439ddd567SLois Curfman McInnes static int MatView_MPIDense(PetscObject obj,Viewer viewer)
5858965ea79SLois Curfman McInnes {
5868965ea79SLois Curfman McInnes   Mat          mat = (Mat) obj;
58739ddd567SLois Curfman McInnes   int          ierr;
588bcd2baecSBarry Smith   ViewerType   vtype;
5898965ea79SLois Curfman McInnes 
590bcd2baecSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
591bcd2baecSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
59239ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
5938965ea79SLois Curfman McInnes   }
594bcd2baecSBarry Smith   else if (vtype == ASCII_FILES_VIEWER) {
59539ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
5968965ea79SLois Curfman McInnes   }
597bcd2baecSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
59839ddd567SLois Curfman McInnes     return MatView_MPIDense_Binary(mat,viewer);
5998965ea79SLois Curfman McInnes   }
6008965ea79SLois Curfman McInnes   return 0;
6018965ea79SLois Curfman McInnes }
6028965ea79SLois Curfman McInnes 
6035615d1e5SSatish Balay #undef __FUNC__
6045615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense"
6054e220ebcSLois Curfman McInnes static int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6068965ea79SLois Curfman McInnes {
6073501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6083501a2bdSLois Curfman McInnes   Mat          mdn = mat->A;
6094e220ebcSLois Curfman McInnes   int          ierr;
6104e220ebcSLois Curfman McInnes   double       isend[5], irecv[5];
6118965ea79SLois Curfman McInnes 
6124e220ebcSLois Curfman McInnes   info->rows_global    = (double)mat->M;
6134e220ebcSLois Curfman McInnes   info->columns_global = (double)mat->N;
6144e220ebcSLois Curfman McInnes   info->rows_local     = (double)mat->m;
6154e220ebcSLois Curfman McInnes   info->columns_local  = (double)mat->N;
6164e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
6174e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr);
6184e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6194e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6208965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6214e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
6224e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
6234e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
6244e220ebcSLois Curfman McInnes     info->memory       = isend[3];
6254e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
6268965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
6273501a2bdSLois Curfman McInnes     MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_MAX,A->comm);
6284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6338965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
6343501a2bdSLois Curfman McInnes     MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_SUM,A->comm);
6354e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6364e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6374e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6384e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6394e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6408965ea79SLois Curfman McInnes   }
6414e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
6424e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
6434e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
6448965ea79SLois Curfman McInnes   return 0;
6458965ea79SLois Curfman McInnes }
6468965ea79SLois Curfman McInnes 
6478c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*);
6488aaee692SLois Curfman McInnes    extern int MatLUFactorNumeric_MPIDense(Mat,Mat*);
6498aaee692SLois Curfman McInnes    extern int MatLUFactor_MPIDense(Mat,IS,IS,double);
6508aaee692SLois Curfman McInnes    extern int MatSolve_MPIDense(Mat,Vec,Vec);
6518c469469SLois Curfman McInnes    extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec);
6528aaee692SLois Curfman McInnes    extern int MatSolveTrans_MPIDense(Mat,Vec,Vec);
6538aaee692SLois Curfman McInnes    extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */
6548aaee692SLois Curfman McInnes 
6555615d1e5SSatish Balay #undef __FUNC__
6565615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense"
65739ddd567SLois Curfman McInnes static int MatSetOption_MPIDense(Mat A,MatOption op)
6588965ea79SLois Curfman McInnes {
65939ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
6608965ea79SLois Curfman McInnes 
6616d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
6626d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
663219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
664219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED) {
665b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
666b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
667aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
6688965ea79SLois Curfman McInnes         MatSetOption(a->A,op);
669b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
670219d9a1aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
6716d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
6726d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
6736d4a8577SBarry Smith              op == MAT_YES_NEW_DIAGONALS)
67494a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_MPIDense:Option ignored\n");
6756d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)
67639b7565bSBarry Smith     {a->roworiented = 0; MatSetOption(a->A,op);}
6776d4a8577SBarry Smith   else if (op == MAT_NO_NEW_DIAGONALS)
678e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");}
6798965ea79SLois Curfman McInnes   else
680e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"unknown option");}
6818965ea79SLois Curfman McInnes   return 0;
6828965ea79SLois Curfman McInnes }
6838965ea79SLois Curfman McInnes 
6845615d1e5SSatish Balay #undef __FUNC__
6855615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense"
6863501a2bdSLois Curfman McInnes static int MatGetSize_MPIDense(Mat A,int *m,int *n)
6878965ea79SLois Curfman McInnes {
6883501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6898965ea79SLois Curfman McInnes   *m = mat->M; *n = mat->N;
6908965ea79SLois Curfman McInnes   return 0;
6918965ea79SLois Curfman McInnes }
6928965ea79SLois Curfman McInnes 
6935615d1e5SSatish Balay #undef __FUNC__
6945615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense"
6953501a2bdSLois Curfman McInnes static int MatGetLocalSize_MPIDense(Mat A,int *m,int *n)
6968965ea79SLois Curfman McInnes {
6973501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6988965ea79SLois Curfman McInnes   *m = mat->m; *n = mat->N;
6998965ea79SLois Curfman McInnes   return 0;
7008965ea79SLois Curfman McInnes }
7018965ea79SLois Curfman McInnes 
7025615d1e5SSatish Balay #undef __FUNC__
7035615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense"
7043501a2bdSLois Curfman McInnes static int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n)
7058965ea79SLois Curfman McInnes {
7063501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7078965ea79SLois Curfman McInnes   *m = mat->rstart; *n = mat->rend;
7088965ea79SLois Curfman McInnes   return 0;
7098965ea79SLois Curfman McInnes }
7108965ea79SLois Curfman McInnes 
7115615d1e5SSatish Balay #undef __FUNC__
7125615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense"
7133501a2bdSLois Curfman McInnes static int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v)
7148965ea79SLois Curfman McInnes {
7153501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
71639ddd567SLois Curfman McInnes   int          lrow, rstart = mat->rstart, rend = mat->rend;
7178965ea79SLois Curfman McInnes 
718e3372554SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,0,"only local rows")
7198965ea79SLois Curfman McInnes   lrow = row - rstart;
72039ddd567SLois Curfman McInnes   return MatGetRow(mat->A,lrow,nz,idx,v);
7218965ea79SLois Curfman McInnes }
7228965ea79SLois Curfman McInnes 
7235615d1e5SSatish Balay #undef __FUNC__
7245615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense"
72539ddd567SLois Curfman McInnes static int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v)
7268965ea79SLois Curfman McInnes {
7270452661fSBarry Smith   if (idx) PetscFree(*idx);
7280452661fSBarry Smith   if (v) PetscFree(*v);
7298965ea79SLois Curfman McInnes   return 0;
7308965ea79SLois Curfman McInnes }
7318965ea79SLois Curfman McInnes 
7325615d1e5SSatish Balay #undef __FUNC__
7335615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense"
734cddf8d76SBarry Smith static int MatNorm_MPIDense(Mat A,NormType type,double *norm)
735096963f5SLois Curfman McInnes {
7363501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
7373501a2bdSLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
7383501a2bdSLois Curfman McInnes   int          ierr, i, j;
7393501a2bdSLois Curfman McInnes   double       sum = 0.0;
7403501a2bdSLois Curfman McInnes   Scalar       *v = mat->v;
7413501a2bdSLois Curfman McInnes 
7423501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
7433501a2bdSLois Curfman McInnes     ierr =  MatNorm(mdn->A,type,norm); CHKERRQ(ierr);
7443501a2bdSLois Curfman McInnes   } else {
7453501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
7463501a2bdSLois Curfman McInnes       for (i=0; i<mat->n*mat->m; i++ ) {
7473501a2bdSLois Curfman McInnes #if defined(PETSC_COMPLEX)
7483501a2bdSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
7493501a2bdSLois Curfman McInnes #else
7503501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
7513501a2bdSLois Curfman McInnes #endif
7523501a2bdSLois Curfman McInnes       }
7536d84be18SBarry Smith       MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);
7543501a2bdSLois Curfman McInnes       *norm = sqrt(*norm);
7553501a2bdSLois Curfman McInnes       PLogFlops(2*mat->n*mat->m);
7563501a2bdSLois Curfman McInnes     }
7573501a2bdSLois Curfman McInnes     else if (type == NORM_1) {
7583501a2bdSLois Curfman McInnes       double *tmp, *tmp2;
7590452661fSBarry Smith       tmp  = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp);
7603501a2bdSLois Curfman McInnes       tmp2 = tmp + mdn->N;
761cddf8d76SBarry Smith       PetscMemzero(tmp,2*mdn->N*sizeof(double));
762096963f5SLois Curfman McInnes       *norm = 0.0;
7633501a2bdSLois Curfman McInnes       v = mat->v;
7643501a2bdSLois Curfman McInnes       for ( j=0; j<mat->n; j++ ) {
7653501a2bdSLois Curfman McInnes         for ( i=0; i<mat->m; i++ ) {
76667e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
7673501a2bdSLois Curfman McInnes         }
7683501a2bdSLois Curfman McInnes       }
7696d84be18SBarry Smith       MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);
7703501a2bdSLois Curfman McInnes       for ( j=0; j<mdn->N; j++ ) {
7713501a2bdSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
7723501a2bdSLois Curfman McInnes       }
7730452661fSBarry Smith       PetscFree(tmp);
7743501a2bdSLois Curfman McInnes       PLogFlops(mat->n*mat->m);
7753501a2bdSLois Curfman McInnes     }
7763501a2bdSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
7773501a2bdSLois Curfman McInnes       double ntemp;
7783501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr);
7796d84be18SBarry Smith       MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);
7803501a2bdSLois Curfman McInnes     }
7813501a2bdSLois Curfman McInnes     else {
782e3372554SBarry Smith       SETERRQ(1,0,"No support for two norm");
7833501a2bdSLois Curfman McInnes     }
7843501a2bdSLois Curfman McInnes   }
7853501a2bdSLois Curfman McInnes   return 0;
7863501a2bdSLois Curfman McInnes }
7873501a2bdSLois Curfman McInnes 
7885615d1e5SSatish Balay #undef __FUNC__
7895615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense"
7903501a2bdSLois Curfman McInnes static int MatTranspose_MPIDense(Mat A,Mat *matout)
7913501a2bdSLois Curfman McInnes {
7923501a2bdSLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
7933501a2bdSLois Curfman McInnes   Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data;
7943501a2bdSLois Curfman McInnes   Mat          B;
7953501a2bdSLois Curfman McInnes   int          M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart;
7963501a2bdSLois Curfman McInnes   int          j, i, ierr;
7973501a2bdSLois Curfman McInnes   Scalar       *v;
7983501a2bdSLois Curfman McInnes 
7997056b6fcSBarry Smith   if (matout == PETSC_NULL && M != N) {
800e3372554SBarry Smith     SETERRQ(1,0,"Supports square matrix only in-place");
8017056b6fcSBarry Smith   }
8027056b6fcSBarry Smith   ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr);
8033501a2bdSLois Curfman McInnes 
8043501a2bdSLois Curfman McInnes   m = Aloc->m; n = Aloc->n; v = Aloc->v;
8050452661fSBarry Smith   rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork);
8063501a2bdSLois Curfman McInnes   for ( j=0; j<n; j++ ) {
8073501a2bdSLois Curfman McInnes     for (i=0; i<m; i++) rwork[i] = rstart + i;
8083501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr);
8093501a2bdSLois Curfman McInnes     v   += m;
8103501a2bdSLois Curfman McInnes   }
8110452661fSBarry Smith   PetscFree(rwork);
8126d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8136d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8143638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
8153501a2bdSLois Curfman McInnes     *matout = B;
8163501a2bdSLois Curfman McInnes   } else {
8173501a2bdSLois Curfman McInnes     /* This isn't really an in-place transpose, but free data struct from a */
8180452661fSBarry Smith     PetscFree(a->rowners);
8193501a2bdSLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
8203501a2bdSLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
8213501a2bdSLois Curfman McInnes     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
8220452661fSBarry Smith     PetscFree(a);
8233501a2bdSLois Curfman McInnes     PetscMemcpy(A,B,sizeof(struct _Mat));
8240452661fSBarry Smith     PetscHeaderDestroy(B);
8253501a2bdSLois Curfman McInnes   }
826096963f5SLois Curfman McInnes   return 0;
827096963f5SLois Curfman McInnes }
828096963f5SLois Curfman McInnes 
82944cd7ae7SLois Curfman McInnes #include "pinclude/plapack.h"
8305615d1e5SSatish Balay #undef __FUNC__
8315615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense"
83244cd7ae7SLois Curfman McInnes static int MatScale_MPIDense(Scalar *alpha,Mat inA)
83344cd7ae7SLois Curfman McInnes {
83444cd7ae7SLois Curfman McInnes   Mat_MPIDense *A = (Mat_MPIDense *) inA->data;
83544cd7ae7SLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense *) A->A->data;
83644cd7ae7SLois Curfman McInnes   int          one = 1, nz;
83744cd7ae7SLois Curfman McInnes 
83844cd7ae7SLois Curfman McInnes   nz = a->m*a->n;
83944cd7ae7SLois Curfman McInnes   BLscal_( &nz, alpha, a->v, &one );
84044cd7ae7SLois Curfman McInnes   PLogFlops(nz);
84144cd7ae7SLois Curfman McInnes   return 0;
84244cd7ae7SLois Curfman McInnes }
84344cd7ae7SLois Curfman McInnes 
8443d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat,Mat *,int);
8458965ea79SLois Curfman McInnes 
8468965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
84739ddd567SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIDense,
84839ddd567SLois Curfman McInnes        MatGetRow_MPIDense,MatRestoreRow_MPIDense,
84939ddd567SLois Curfman McInnes        MatMult_MPIDense,MatMultAdd_MPIDense,
850096963f5SLois Curfman McInnes        MatMultTrans_MPIDense,MatMultTransAdd_MPIDense,
851e7ca0642SLois Curfman McInnes /*       MatSolve_MPIDense,0, */
852e7ca0642SLois Curfman McInnes        0,0,
85339ddd567SLois Curfman McInnes        0,0,
8548c469469SLois Curfman McInnes        0,0,
8558c469469SLois Curfman McInnes /*       MatLUFactor_MPIDense,0, */
8568aaee692SLois Curfman McInnes        0,MatTranspose_MPIDense,
85739ddd567SLois Curfman McInnes        MatGetInfo_MPIDense,0,
858096963f5SLois Curfman McInnes        MatGetDiagonal_MPIDense,0,MatNorm_MPIDense,
85939ddd567SLois Curfman McInnes        MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense,
8608965ea79SLois Curfman McInnes        0,
86139ddd567SLois Curfman McInnes        MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense,
8623b2fbd54SBarry Smith        0,0,
8638c469469SLois Curfman McInnes /*       0,MatLUFactorSymbolic_MPIDense,MatLUFactorNumeric_MPIDense, */
8648aaee692SLois Curfman McInnes        0,0,
86539ddd567SLois Curfman McInnes        MatGetSize_MPIDense,MatGetLocalSize_MPIDense,
86639ddd567SLois Curfman McInnes        MatGetOwnershipRange_MPIDense,
867ff14e315SSatish Balay        0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense,
86894a9d846SBarry Smith        MatConvertSameType_MPIDense,
869b49de8d1SLois Curfman McInnes        0,0,0,0,0,
8704e220ebcSLois Curfman McInnes        0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense,
8714e220ebcSLois Curfman McInnes        0,0,0,MatGetBlockSize_MPIDense};
8728965ea79SLois Curfman McInnes 
8735615d1e5SSatish Balay #undef __FUNC__
8745615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense"
8758965ea79SLois Curfman McInnes /*@C
87639ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
8778965ea79SLois Curfman McInnes 
8788965ea79SLois Curfman McInnes    Input Parameters:
8798965ea79SLois Curfman McInnes .  comm - MPI communicator
8808965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
8818965ea79SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
8828965ea79SLois Curfman McInnes            if N is given)
8838965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
8848965ea79SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
8858965ea79SLois Curfman McInnes            if n is given)
886b4fd4287SBarry Smith .  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
887dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
8888965ea79SLois Curfman McInnes 
8898965ea79SLois Curfman McInnes    Output Parameter:
890477f1c0bSLois Curfman McInnes .  A - the matrix
8918965ea79SLois Curfman McInnes 
8928965ea79SLois Curfman McInnes    Notes:
89339ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
89439ddd567SLois Curfman McInnes    storage by columns.
8958965ea79SLois Curfman McInnes 
89618f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
89718f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
898b4fd4287SBarry Smith    set data=PETSC_NULL.
89918f449edSLois Curfman McInnes 
9008965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
9018965ea79SLois Curfman McInnes    (possibly both).
9028965ea79SLois Curfman McInnes 
9033501a2bdSLois Curfman McInnes    Currently, the only parallel dense matrix decomposition is by rows,
9043501a2bdSLois Curfman McInnes    so that n=N and each submatrix owns all of the global columns.
9053501a2bdSLois Curfman McInnes 
90639ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel
9078965ea79SLois Curfman McInnes 
90839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
9098965ea79SLois Curfman McInnes @*/
910477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A)
9118965ea79SLois Curfman McInnes {
9128965ea79SLois Curfman McInnes   Mat          mat;
91339ddd567SLois Curfman McInnes   Mat_MPIDense *a;
91425cdf11fSBarry Smith   int          ierr, i,flg;
9158965ea79SLois Curfman McInnes 
916ed2daf61SLois Curfman McInnes   /* Note:  For now, when data is specified above, this assumes the user correctly
917ed2daf61SLois Curfman McInnes    allocates the local dense storage space.  We should add error checking. */
91818f449edSLois Curfman McInnes 
919477f1c0bSLois Curfman McInnes   *A = 0;
9200452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,comm);
9218965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
9220452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
9238965ea79SLois Curfman McInnes   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
92439ddd567SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIDense;
92539ddd567SLois Curfman McInnes   mat->view       = MatView_MPIDense;
9268965ea79SLois Curfman McInnes   mat->factor     = 0;
92790f02eecSBarry Smith   mat->mapping    = 0;
9288965ea79SLois Curfman McInnes 
929622d7880SLois Curfman McInnes   a->factor       = 0;
930*e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
9318965ea79SLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
9328965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
9338965ea79SLois Curfman McInnes 
93439ddd567SLois Curfman McInnes   if (M == PETSC_DECIDE) MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm);
9358965ea79SLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
93639ddd567SLois Curfman McInnes 
93739ddd567SLois Curfman McInnes   /* each row stores all columns */
93839ddd567SLois Curfman McInnes   if (N == PETSC_DECIDE) N = n;
939d7e8b826SBarry Smith   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
940e3372554SBarry Smith   /*  if (n != N) SETERRQ(1,0,"For now, only n=N is supported"); */
941aca0ad90SLois Curfman McInnes   a->N = mat->N = N;
942aca0ad90SLois Curfman McInnes   a->M = mat->M = M;
943aca0ad90SLois Curfman McInnes   a->m = mat->m = m;
944aca0ad90SLois Curfman McInnes   a->n = mat->n = n;
9458965ea79SLois Curfman McInnes 
9468965ea79SLois Curfman McInnes   /* build local table of row and column ownerships */
947d7e8b826SBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
948d7e8b826SBarry Smith   a->cowners = a->rowners + a->size + 1;
9497056b6fcSBarry Smith   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense));
9508965ea79SLois Curfman McInnes   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
9518965ea79SLois Curfman McInnes   a->rowners[0] = 0;
9528965ea79SLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
9538965ea79SLois Curfman McInnes     a->rowners[i] += a->rowners[i-1];
9548965ea79SLois Curfman McInnes   }
9558965ea79SLois Curfman McInnes   a->rstart = a->rowners[a->rank];
9568965ea79SLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
957d7e8b826SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
958d7e8b826SBarry Smith   a->cowners[0] = 0;
959d7e8b826SBarry Smith   for ( i=2; i<=a->size; i++ ) {
960d7e8b826SBarry Smith     a->cowners[i] += a->cowners[i-1];
961d7e8b826SBarry Smith   }
9628965ea79SLois Curfman McInnes 
96318f449edSLois Curfman McInnes   ierr = MatCreateSeqDense(MPI_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr);
9648965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
9658965ea79SLois Curfman McInnes 
9668965ea79SLois Curfman McInnes   /* build cache for off array entries formed */
9678965ea79SLois Curfman McInnes   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
9688965ea79SLois Curfman McInnes 
9698965ea79SLois Curfman McInnes   /* stuff used for matrix vector multiply */
9708965ea79SLois Curfman McInnes   a->lvec        = 0;
9718965ea79SLois Curfman McInnes   a->Mvctx       = 0;
97239b7565bSBarry Smith   a->roworiented = 1;
9738965ea79SLois Curfman McInnes 
974477f1c0bSLois Curfman McInnes   *A = mat;
97525cdf11fSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
97625cdf11fSBarry Smith   if (flg) {
9778c469469SLois Curfman McInnes     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
9788c469469SLois Curfman McInnes   }
9798965ea79SLois Curfman McInnes   return 0;
9808965ea79SLois Curfman McInnes }
9818965ea79SLois Curfman McInnes 
9825615d1e5SSatish Balay #undef __FUNC__
9835615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIDense"
9843d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues)
9858965ea79SLois Curfman McInnes {
9868965ea79SLois Curfman McInnes   Mat          mat;
9873501a2bdSLois Curfman McInnes   Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data;
98839ddd567SLois Curfman McInnes   int          ierr;
9892ba99913SLois Curfman McInnes   FactorCtx    *factor;
9908965ea79SLois Curfman McInnes 
9918965ea79SLois Curfman McInnes   *newmat       = 0;
9920452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,A->comm);
9938965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
9940452661fSBarry Smith   mat->data      = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
9958965ea79SLois Curfman McInnes   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
99639ddd567SLois Curfman McInnes   mat->destroy   = MatDestroy_MPIDense;
99739ddd567SLois Curfman McInnes   mat->view      = MatView_MPIDense;
9983501a2bdSLois Curfman McInnes   mat->factor    = A->factor;
999c456f294SBarry Smith   mat->assembled = PETSC_TRUE;
10008965ea79SLois Curfman McInnes 
100144cd7ae7SLois Curfman McInnes   a->m = mat->m = oldmat->m;
100244cd7ae7SLois Curfman McInnes   a->n = mat->n = oldmat->n;
100344cd7ae7SLois Curfman McInnes   a->M = mat->M = oldmat->M;
100444cd7ae7SLois Curfman McInnes   a->N = mat->N = oldmat->N;
10052ba99913SLois Curfman McInnes   if (oldmat->factor) {
10062ba99913SLois Curfman McInnes     a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor);
10072ba99913SLois Curfman McInnes     /* copy factor contents ... add this code! */
10082ba99913SLois Curfman McInnes   } else a->factor = 0;
10098965ea79SLois Curfman McInnes 
10108965ea79SLois Curfman McInnes   a->rstart       = oldmat->rstart;
10118965ea79SLois Curfman McInnes   a->rend         = oldmat->rend;
10128965ea79SLois Curfman McInnes   a->size         = oldmat->size;
10138965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1014*e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
10158965ea79SLois Curfman McInnes 
10160452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
101739ddd567SLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense));
10188965ea79SLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
10198965ea79SLois Curfman McInnes   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
10208965ea79SLois Curfman McInnes 
10218965ea79SLois Curfman McInnes   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
10228965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->lvec);
102355659b69SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
10248965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->Mvctx);
10258965ea79SLois Curfman McInnes   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
10268965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
10278965ea79SLois Curfman McInnes   *newmat = mat;
10288965ea79SLois Curfman McInnes   return 0;
10298965ea79SLois Curfman McInnes }
10308965ea79SLois Curfman McInnes 
103177c4ece6SBarry Smith #include "sys.h"
10328965ea79SLois Curfman McInnes 
10335615d1e5SSatish Balay #undef __FUNC__
10345615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile"
103590ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat)
103690ace30eSBarry Smith {
103790ace30eSBarry Smith   int        *rowners, i,size,rank,m,rstart,rend,ierr,nz,j;
103890ace30eSBarry Smith   Scalar     *array,*vals,*vals_ptr;
103990ace30eSBarry Smith   MPI_Status status;
104090ace30eSBarry Smith 
104190ace30eSBarry Smith   MPI_Comm_rank(comm,&rank);
104290ace30eSBarry Smith   MPI_Comm_size(comm,&size);
104390ace30eSBarry Smith 
104490ace30eSBarry Smith   /* determine ownership of all rows */
104590ace30eSBarry Smith   m = M/size + ((M % size) > rank);
104690ace30eSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
104790ace30eSBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
104890ace30eSBarry Smith   rowners[0] = 0;
104990ace30eSBarry Smith   for ( i=2; i<=size; i++ ) {
105090ace30eSBarry Smith     rowners[i] += rowners[i-1];
105190ace30eSBarry Smith   }
105290ace30eSBarry Smith   rstart = rowners[rank];
105390ace30eSBarry Smith   rend   = rowners[rank+1];
105490ace30eSBarry Smith 
105590ace30eSBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
105690ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr);
105790ace30eSBarry Smith 
105890ace30eSBarry Smith   if (!rank) {
105990ace30eSBarry Smith     vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
106090ace30eSBarry Smith 
106190ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
106277c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,BINARY_SCALAR); CHKERRQ(ierr);
106390ace30eSBarry Smith 
106490ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
106590ace30eSBarry Smith     vals_ptr = vals;
106690ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
106790ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
106890ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
106990ace30eSBarry Smith       }
107090ace30eSBarry Smith     }
107190ace30eSBarry Smith 
107290ace30eSBarry Smith     /* read in other processors and ship out */
107390ace30eSBarry Smith     for ( i=1; i<size; i++ ) {
107490ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
107577c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
107690ace30eSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);
107790ace30eSBarry Smith     }
107890ace30eSBarry Smith   }
107990ace30eSBarry Smith   else {
108090ace30eSBarry Smith     /* receive numeric values */
108190ace30eSBarry Smith     vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
108290ace30eSBarry Smith 
108390ace30eSBarry Smith     /* receive message of values*/
108490ace30eSBarry Smith     MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);
108590ace30eSBarry Smith 
108690ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
108790ace30eSBarry Smith     vals_ptr = vals;
108890ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
108990ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
109090ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
109190ace30eSBarry Smith       }
109290ace30eSBarry Smith     }
109390ace30eSBarry Smith   }
109490ace30eSBarry Smith   PetscFree(rowners);
109590ace30eSBarry Smith   PetscFree(vals);
10966d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
10976d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
109890ace30eSBarry Smith   return 0;
109990ace30eSBarry Smith }
110090ace30eSBarry Smith 
110190ace30eSBarry Smith 
11025615d1e5SSatish Balay #undef __FUNC__
11035615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense"
110419bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat)
11058965ea79SLois Curfman McInnes {
11068965ea79SLois Curfman McInnes   Mat          A;
11078965ea79SLois Curfman McInnes   int          i, nz, ierr, j,rstart, rend, fd;
11088965ea79SLois Curfman McInnes   Scalar       *vals,*svals;
110919bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
11108965ea79SLois Curfman McInnes   MPI_Status   status;
11118965ea79SLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
11128965ea79SLois Curfman McInnes   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
111319bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
11148965ea79SLois Curfman McInnes 
11158965ea79SLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
11168965ea79SLois Curfman McInnes   if (!rank) {
111790ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
111877c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr);
1119e3372554SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object");
11208965ea79SLois Curfman McInnes   }
11218965ea79SLois Curfman McInnes 
11228965ea79SLois Curfman McInnes   MPI_Bcast(header+1,3,MPI_INT,0,comm);
112390ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
112490ace30eSBarry Smith 
112590ace30eSBarry Smith   /*
112690ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
112790ace30eSBarry Smith   */
112890ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
112990ace30eSBarry Smith     return MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);
113090ace30eSBarry Smith   }
113190ace30eSBarry Smith 
11328965ea79SLois Curfman McInnes   /* determine ownership of all rows */
11338965ea79SLois Curfman McInnes   m = M/size + ((M % size) > rank);
11340452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
11358965ea79SLois Curfman McInnes   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
11368965ea79SLois Curfman McInnes   rowners[0] = 0;
11378965ea79SLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
11388965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
11398965ea79SLois Curfman McInnes   }
11408965ea79SLois Curfman McInnes   rstart = rowners[rank];
11418965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
11428965ea79SLois Curfman McInnes 
11438965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
11440452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
11458965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
11468965ea79SLois Curfman McInnes   if (!rank) {
11470452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
114877c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
11490452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
11508965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
11518965ea79SLois Curfman McInnes     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
11520452661fSBarry Smith     PetscFree(sndcounts);
11538965ea79SLois Curfman McInnes   }
11548965ea79SLois Curfman McInnes   else {
11558965ea79SLois Curfman McInnes     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
11568965ea79SLois Curfman McInnes   }
11578965ea79SLois Curfman McInnes 
11588965ea79SLois Curfman McInnes   if (!rank) {
11598965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
11600452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1161cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
11628965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
11638965ea79SLois Curfman McInnes       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
11648965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
11658965ea79SLois Curfman McInnes       }
11668965ea79SLois Curfman McInnes     }
11670452661fSBarry Smith     PetscFree(rowlengths);
11688965ea79SLois Curfman McInnes 
11698965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
11708965ea79SLois Curfman McInnes     maxnz = 0;
11718965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
11720452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
11738965ea79SLois Curfman McInnes     }
11740452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
11758965ea79SLois Curfman McInnes 
11768965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
11778965ea79SLois Curfman McInnes     nz = procsnz[0];
11780452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
117977c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr);
11808965ea79SLois Curfman McInnes 
11818965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
11828965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
11838965ea79SLois Curfman McInnes       nz = procsnz[i];
118477c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr);
11858965ea79SLois Curfman McInnes       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
11868965ea79SLois Curfman McInnes     }
11870452661fSBarry Smith     PetscFree(cols);
11888965ea79SLois Curfman McInnes   }
11898965ea79SLois Curfman McInnes   else {
11908965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
11918965ea79SLois Curfman McInnes     nz = 0;
11928965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
11938965ea79SLois Curfman McInnes       nz += ourlens[i];
11948965ea79SLois Curfman McInnes     }
11950452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
11968965ea79SLois Curfman McInnes 
11978965ea79SLois Curfman McInnes     /* receive message of column indices*/
11988965ea79SLois Curfman McInnes     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
11998965ea79SLois Curfman McInnes     MPI_Get_count(&status,MPI_INT,&maxnz);
1200e3372554SBarry Smith     if (maxnz != nz) SETERRQ(1,0,"something is wrong with file");
12018965ea79SLois Curfman McInnes   }
12028965ea79SLois Curfman McInnes 
12038965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
1204cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
12058965ea79SLois Curfman McInnes   jj = 0;
12068965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12078965ea79SLois Curfman McInnes     for ( j=0; j<ourlens[i]; j++ ) {
12088965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
12098965ea79SLois Curfman McInnes       jj++;
12108965ea79SLois Curfman McInnes     }
12118965ea79SLois Curfman McInnes   }
12128965ea79SLois Curfman McInnes 
12138965ea79SLois Curfman McInnes   /* create our matrix */
12148965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12158965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
12168965ea79SLois Curfman McInnes   }
1217b4fd4287SBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
12188965ea79SLois Curfman McInnes   A = *newmat;
12198965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
12208965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
12218965ea79SLois Curfman McInnes   }
12228965ea79SLois Curfman McInnes 
12238965ea79SLois Curfman McInnes   if (!rank) {
12240452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
12258965ea79SLois Curfman McInnes 
12268965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
12278965ea79SLois Curfman McInnes     nz = procsnz[0];
122877c4ece6SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
12298965ea79SLois Curfman McInnes 
12308965ea79SLois Curfman McInnes     /* insert into matrix */
12318965ea79SLois Curfman McInnes     jj      = rstart;
12328965ea79SLois Curfman McInnes     smycols = mycols;
12338965ea79SLois Curfman McInnes     svals   = vals;
12348965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
12358965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
12368965ea79SLois Curfman McInnes       smycols += ourlens[i];
12378965ea79SLois Curfman McInnes       svals   += ourlens[i];
12388965ea79SLois Curfman McInnes       jj++;
12398965ea79SLois Curfman McInnes     }
12408965ea79SLois Curfman McInnes 
12418965ea79SLois Curfman McInnes     /* read in other processors and ship out */
12428965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
12438965ea79SLois Curfman McInnes       nz = procsnz[i];
124477c4ece6SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
12458965ea79SLois Curfman McInnes       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
12468965ea79SLois Curfman McInnes     }
12470452661fSBarry Smith     PetscFree(procsnz);
12488965ea79SLois Curfman McInnes   }
12498965ea79SLois Curfman McInnes   else {
12508965ea79SLois Curfman McInnes     /* receive numeric values */
12510452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
12528965ea79SLois Curfman McInnes 
12538965ea79SLois Curfman McInnes     /* receive message of values*/
12548965ea79SLois Curfman McInnes     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
12558965ea79SLois Curfman McInnes     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
1256e3372554SBarry Smith     if (maxnz != nz) SETERRQ(1,0,"something is wrong with file");
12578965ea79SLois Curfman McInnes 
12588965ea79SLois Curfman McInnes     /* insert into matrix */
12598965ea79SLois Curfman McInnes     jj      = rstart;
12608965ea79SLois Curfman McInnes     smycols = mycols;
12618965ea79SLois Curfman McInnes     svals   = vals;
12628965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
12638965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
12648965ea79SLois Curfman McInnes       smycols += ourlens[i];
12658965ea79SLois Curfman McInnes       svals   += ourlens[i];
12668965ea79SLois Curfman McInnes       jj++;
12678965ea79SLois Curfman McInnes     }
12688965ea79SLois Curfman McInnes   }
12690452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
12708965ea79SLois Curfman McInnes 
12716d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
12726d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
12738965ea79SLois Curfman McInnes   return 0;
12748965ea79SLois Curfman McInnes }
127590ace30eSBarry Smith 
127690ace30eSBarry Smith 
127790ace30eSBarry Smith 
127890ace30eSBarry Smith 
127990ace30eSBarry Smith 
1280