1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33*f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35*f140bc17SStefano Zampini else { 36*f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37*f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38*f140bc17SStefano Zampini *B = A; 39*f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 44ba8c8a56SBarry Smith { 45ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 46ba8c8a56SBarry Smith PetscErrorCode ierr; 47d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 48ba8c8a56SBarry Smith 49ba8c8a56SBarry Smith PetscFunctionBegin; 50e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 51ba8c8a56SBarry Smith lrow = row - rstart; 52ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 53ba8c8a56SBarry Smith PetscFunctionReturn(0); 54ba8c8a56SBarry Smith } 55ba8c8a56SBarry Smith 56637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 59ba8c8a56SBarry Smith PetscErrorCode ierr; 60637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 61ba8c8a56SBarry Smith 62ba8c8a56SBarry Smith PetscFunctionBegin; 63637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 64637a0070SStefano Zampini lrow = row - rstart; 65637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 66ba8c8a56SBarry Smith PetscFunctionReturn(0); 67ba8c8a56SBarry Smith } 68ba8c8a56SBarry Smith 6911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 700de54da6SSatish Balay { 710de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 726849ba73SBarry Smith PetscErrorCode ierr; 73d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7487828ca2SBarry Smith PetscScalar *array; 750de54da6SSatish Balay MPI_Comm comm; 764b6ae80fSStefano Zampini PetscBool flg; 7711bd1e4dSLisandro Dalcin Mat B; 780de54da6SSatish Balay 790de54da6SSatish Balay PetscFunctionBegin; 804b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 814b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 8211bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 83616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 844b6ae80fSStefano Zampini 854b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 864b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 870de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 914b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 934b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9411bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9511bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9611bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9711bd1e4dSLisandro Dalcin *a = B; 9811bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 992205254eSKarl Rupp } else *a = B; 1000de54da6SSatish Balay PetscFunctionReturn(0); 1010de54da6SSatish Balay } 1020de54da6SSatish Balay 10313f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1048965ea79SLois Curfman McInnes { 10539b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 106dfbe8321SBarry Smith PetscErrorCode ierr; 107d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 108ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1098965ea79SLois Curfman McInnes 1103a40ed3dSBarry Smith PetscFunctionBegin; 1118965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1125ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 113e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1148965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1158965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11639b7565bSBarry Smith if (roworiented) { 11739b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1183a40ed3dSBarry Smith } else { 1198965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1205ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 121e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12239b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12339b7565bSBarry Smith } 1248965ea79SLois Curfman McInnes } 1252205254eSKarl Rupp } else if (!A->donotstash) { 1265080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12739b7565bSBarry Smith if (roworiented) { 128b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 129d36fbae8SSatish Balay } else { 130b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 13139b7565bSBarry Smith } 132b49de8d1SLois Curfman McInnes } 133b49de8d1SLois Curfman McInnes } 1343a40ed3dSBarry Smith PetscFunctionReturn(0); 135b49de8d1SLois Curfman McInnes } 136b49de8d1SLois Curfman McInnes 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 15949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 16049a6ff4bSBarry Smith { 16149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16249a6ff4bSBarry Smith PetscErrorCode ierr; 16349a6ff4bSBarry Smith 16449a6ff4bSBarry Smith PetscFunctionBegin; 16549a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 16649a6ff4bSBarry Smith PetscFunctionReturn(0); 16749a6ff4bSBarry Smith } 16849a6ff4bSBarry Smith 169ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 170ad16ce7aSStefano Zampini { 171ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17217359960SJose E. Roman PetscBool iscuda; 173ad16ce7aSStefano Zampini PetscErrorCode ierr; 174ad16ce7aSStefano Zampini 175ad16ce7aSStefano Zampini PetscFunctionBegin; 17617359960SJose E. Roman if (!a->A) { 17717359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17817359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 17917359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 18017359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 18117359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 18217359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 18317359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 18417359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 18517359960SJose E. Roman } 186ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 187ad16ce7aSStefano Zampini PetscFunctionReturn(0); 188ad16ce7aSStefano Zampini } 189ad16ce7aSStefano Zampini 190637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 191ff14e315SSatish Balay { 192ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 193dfbe8321SBarry Smith PetscErrorCode ierr; 194ff14e315SSatish Balay 1953a40ed3dSBarry Smith PetscFunctionBegin; 196616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1978c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1983a40ed3dSBarry Smith PetscFunctionReturn(0); 199ff14e315SSatish Balay } 200ff14e315SSatish Balay 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2028572280aSBarry Smith { 2038572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2048572280aSBarry Smith PetscErrorCode ierr; 2058572280aSBarry Smith 2068572280aSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2098572280aSBarry Smith PetscFunctionReturn(0); 2108572280aSBarry Smith } 2118572280aSBarry Smith 2126947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2136947451fSStefano Zampini { 2146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2156947451fSStefano Zampini PetscErrorCode ierr; 2166947451fSStefano Zampini 2176947451fSStefano Zampini PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2196947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2206947451fSStefano Zampini PetscFunctionReturn(0); 2216947451fSStefano Zampini } 2226947451fSStefano Zampini 223637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 224d3042a70SBarry Smith { 225d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 226d3042a70SBarry Smith PetscErrorCode ierr; 227d3042a70SBarry Smith 228d3042a70SBarry Smith PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 230616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 231d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 232d3042a70SBarry Smith PetscFunctionReturn(0); 233d3042a70SBarry Smith } 234d3042a70SBarry Smith 235d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 236d3042a70SBarry Smith { 237d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 238d3042a70SBarry Smith PetscErrorCode ierr; 239d3042a70SBarry Smith 240d3042a70SBarry Smith PetscFunctionBegin; 241616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 242616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 243d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 244d3042a70SBarry Smith PetscFunctionReturn(0); 245d3042a70SBarry Smith } 246d3042a70SBarry Smith 247d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 248d5ea218eSStefano Zampini { 249d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 250d5ea218eSStefano Zampini PetscErrorCode ierr; 251d5ea218eSStefano Zampini 252d5ea218eSStefano Zampini PetscFunctionBegin; 253616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 254616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 255d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 256d5ea218eSStefano Zampini PetscFunctionReturn(0); 257d5ea218eSStefano Zampini } 258d5ea218eSStefano Zampini 2597dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 260ca3fa75bSLois Curfman McInnes { 261ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2626849ba73SBarry Smith PetscErrorCode ierr; 263637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2645d0c19d7SBarry Smith const PetscInt *irow,*icol; 265637a0070SStefano Zampini const PetscScalar *v; 266637a0070SStefano Zampini PetscScalar *bv; 267ca3fa75bSLois Curfman McInnes Mat newmat; 2684aa3045dSJed Brown IS iscol_local; 26942a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 270ca3fa75bSLois Curfman McInnes 271ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 27242a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 27342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 27442a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 27542a884f0SBarry Smith 2764aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 277ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2784aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 279b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 280b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2814aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 282ca3fa75bSLois Curfman McInnes 283ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2847eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2857eba5e9cSLois Curfman McInnes original matrix! */ 286ca3fa75bSLois Curfman McInnes 287ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2887eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 289ca3fa75bSLois Curfman McInnes 290ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 291ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 292e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2937eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 294ca3fa75bSLois Curfman McInnes newmat = *B; 295ca3fa75bSLois Curfman McInnes } else { 296ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 297ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2984aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2997adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3000298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 301ca3fa75bSLois Curfman McInnes } 302ca3fa75bSLois Curfman McInnes 303ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 304ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 305637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 306637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 307637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3084aa3045dSJed Brown for (i=0; i<Ncols; i++) { 309637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 310ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3117eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes } 314637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 315637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 316ca3fa75bSLois Curfman McInnes 317ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 318ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 319ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 320ca3fa75bSLois Curfman McInnes 321ca3fa75bSLois Curfman McInnes /* Free work space */ 322ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3235bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 32432bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 325ca3fa75bSLois Curfman McInnes *B = newmat; 326ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 327ca3fa75bSLois Curfman McInnes } 328ca3fa75bSLois Curfman McInnes 329637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 330ff14e315SSatish Balay { 33173a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 33273a71a0fSBarry Smith PetscErrorCode ierr; 33373a71a0fSBarry Smith 3343a40ed3dSBarry Smith PetscFunctionBegin; 3358c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3363a40ed3dSBarry Smith PetscFunctionReturn(0); 337ff14e315SSatish Balay } 338ff14e315SSatish Balay 339637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3408572280aSBarry Smith { 3418572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3428572280aSBarry Smith PetscErrorCode ierr; 3438572280aSBarry Smith 3448572280aSBarry Smith PetscFunctionBegin; 3458572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3468572280aSBarry Smith PetscFunctionReturn(0); 3478572280aSBarry Smith } 3488572280aSBarry Smith 3496947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3506947451fSStefano Zampini { 3516947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3526947451fSStefano Zampini PetscErrorCode ierr; 3536947451fSStefano Zampini 3546947451fSStefano Zampini PetscFunctionBegin; 3556947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3566947451fSStefano Zampini PetscFunctionReturn(0); 3576947451fSStefano Zampini } 3586947451fSStefano Zampini 359dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3608965ea79SLois Curfman McInnes { 36139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 362dfbe8321SBarry Smith PetscErrorCode ierr; 36313f74950SBarry Smith PetscInt nstash,reallocs; 3648965ea79SLois Curfman McInnes 3653a40ed3dSBarry Smith PetscFunctionBegin; 366910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 3678965ea79SLois Curfman McInnes 368d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3698798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 370ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3713a40ed3dSBarry Smith PetscFunctionReturn(0); 3728965ea79SLois Curfman McInnes } 3738965ea79SLois Curfman McInnes 374dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3758965ea79SLois Curfman McInnes { 37639ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3776849ba73SBarry Smith PetscErrorCode ierr; 37813f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 37913f74950SBarry Smith PetscMPIInt n; 38087828ca2SBarry Smith PetscScalar *val; 3818965ea79SLois Curfman McInnes 3823a40ed3dSBarry Smith PetscFunctionBegin; 383910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3848965ea79SLois Curfman McInnes /* wait on receives */ 3857ef1d9bdSSatish Balay while (1) { 3868798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3877ef1d9bdSSatish Balay if (!flg) break; 3888965ea79SLois Curfman McInnes 3897ef1d9bdSSatish Balay for (i=0; i<n;) { 3907ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3912205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3922205254eSKarl Rupp if (row[j] != rstart) break; 3932205254eSKarl Rupp } 3947ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3957ef1d9bdSSatish Balay else ncols = n-i; 3967ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3974b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay i = j; 3998965ea79SLois Curfman McInnes } 4007ef1d9bdSSatish Balay } 4018798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 402910cf402Sprj- } 4038965ea79SLois Curfman McInnes 40439ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 40539ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes 4076d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 40839ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4098965ea79SLois Curfman McInnes } 4103a40ed3dSBarry Smith PetscFunctionReturn(0); 4118965ea79SLois Curfman McInnes } 4128965ea79SLois Curfman McInnes 413dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4148965ea79SLois Curfman McInnes { 415dfbe8321SBarry Smith PetscErrorCode ierr; 41639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4173a40ed3dSBarry Smith 4183a40ed3dSBarry Smith PetscFunctionBegin; 4193a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4203a40ed3dSBarry Smith PetscFunctionReturn(0); 4218965ea79SLois Curfman McInnes } 4228965ea79SLois Curfman McInnes 423637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4248965ea79SLois Curfman McInnes { 42539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 431637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 43797b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 438637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 44097b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 441637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 44297b48c8fSBarry Smith } 443637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 447637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 448637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 450637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 451b9679d65SBarry Smith } 452606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464dfbe8321SBarry Smith PetscErrorCode ierr; 465637a0070SStefano Zampini const PetscScalar *ax; 466637a0070SStefano Zampini PetscScalar *ay; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 469637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 470637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 471637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 472637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 473637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 474637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 475637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4763a40ed3dSBarry Smith PetscFunctionReturn(0); 4778965ea79SLois Curfman McInnes } 4788965ea79SLois Curfman McInnes 479dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4808965ea79SLois Curfman McInnes { 48139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 482dfbe8321SBarry Smith PetscErrorCode ierr; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485c456f294SBarry Smith 4863a40ed3dSBarry Smith PetscFunctionBegin; 487637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 488637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 489637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 490637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 491637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 492637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 493637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4943a40ed3dSBarry Smith PetscFunctionReturn(0); 4958965ea79SLois Curfman McInnes } 4968965ea79SLois Curfman McInnes 497dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 498096963f5SLois Curfman McInnes { 499096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 500dfbe8321SBarry Smith PetscErrorCode ierr; 501637a0070SStefano Zampini const PetscScalar *ax; 502637a0070SStefano Zampini PetscScalar *ay; 503096963f5SLois Curfman McInnes 5043a40ed3dSBarry Smith PetscFunctionBegin; 505637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 507637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 508637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 509637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 510637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 511637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 512637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 5133a40ed3dSBarry Smith PetscFunctionReturn(0); 514096963f5SLois Curfman McInnes } 515096963f5SLois Curfman McInnes 516dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 517096963f5SLois Curfman McInnes { 518096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 519dfbe8321SBarry Smith PetscErrorCode ierr; 520637a0070SStefano Zampini const PetscScalar *ax; 521637a0070SStefano Zampini PetscScalar *ay; 522096963f5SLois Curfman McInnes 5233a40ed3dSBarry Smith PetscFunctionBegin; 5243501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 525637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 526637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 527637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 528637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 529637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 530637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 531637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 5323a40ed3dSBarry Smith PetscFunctionReturn(0); 533096963f5SLois Curfman McInnes } 534096963f5SLois Curfman McInnes 535dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5368965ea79SLois Curfman McInnes { 53739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 538dfbe8321SBarry Smith PetscErrorCode ierr; 539637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 541637a0070SStefano Zampini const PetscScalar *av; 542ed3cc1f0SBarry Smith 5433a40ed3dSBarry Smith PetscFunctionBegin; 5442dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5451ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 546096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 547e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 548d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 549d0f46423SBarry Smith radd = A->rmap->rstart*m; 550637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 551637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 55244cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 553637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 554096963f5SLois Curfman McInnes } 555637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5561ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5573a40ed3dSBarry Smith PetscFunctionReturn(0); 5588965ea79SLois Curfman McInnes } 5598965ea79SLois Curfman McInnes 560dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5618965ea79SLois Curfman McInnes { 5623501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 563dfbe8321SBarry Smith PetscErrorCode ierr; 564ed3cc1f0SBarry Smith 5653a40ed3dSBarry Smith PetscFunctionBegin; 566aa482453SBarry Smith #if defined(PETSC_USE_LOG) 567d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5688965ea79SLois Curfman McInnes #endif 5698798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 570616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 571616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5726bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5736bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 574637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5756947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5765ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 57701b82886SBarry Smith 578bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 579dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5808baccfbdSHong Zhang 58149a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 582ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5838baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5848572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5858572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5868572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 589d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 590d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 591d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5928baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5938baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5948baccfbdSHong Zhang #endif 595d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 596d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 597d24d4204SJose E. Roman #endif 598bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5994222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6004222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6016718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6026718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6036718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6046718818eSStefano Zampini #endif 60586aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60686aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6096947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6106947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6126947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6135ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6145ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6153a40ed3dSBarry Smith PetscFunctionReturn(0); 6168965ea79SLois Curfman McInnes } 61739ddd567SLois Curfman McInnes 61852c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 61952c5f739Sprj- 6209804daf3SBarry Smith #include <petscdraw.h> 6216849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6228965ea79SLois Curfman McInnes { 62339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 624dfbe8321SBarry Smith PetscErrorCode ierr; 625616b8fbbSStefano Zampini PetscMPIInt rank; 62619fd82e9SBarry Smith PetscViewerType vtype; 627ace3abfcSBarry Smith PetscBool iascii,isdraw; 628b0a32e0cSBarry Smith PetscViewer sviewer; 629f3ef73ceSBarry Smith PetscViewerFormat format; 6308965ea79SLois Curfman McInnes 6313a40ed3dSBarry Smith PetscFunctionBegin; 632616b8fbbSStefano Zampini ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 633251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 634251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 63532077d6dSBarry Smith if (iascii) { 636b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 637b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 638456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6394e220ebcSLois Curfman McInnes MatInfo info; 640888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6411575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6427b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 643b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6441575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 645637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6463a40ed3dSBarry Smith PetscFunctionReturn(0); 647fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6483a40ed3dSBarry Smith PetscFunctionReturn(0); 6498965ea79SLois Curfman McInnes } 650f1af5d2fSBarry Smith } else if (isdraw) { 651b0a32e0cSBarry Smith PetscDraw draw; 652ace3abfcSBarry Smith PetscBool isnull; 653f1af5d2fSBarry Smith 654b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 655b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 656f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 657f1af5d2fSBarry Smith } 65877ed5343SBarry Smith 6597da1fb6eSBarry Smith { 6608965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6618965ea79SLois Curfman McInnes Mat A; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 663ba8c8a56SBarry Smith PetscInt *cols; 664ba8c8a56SBarry Smith PetscScalar *vals; 6658965ea79SLois Curfman McInnes 666ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6678965ea79SLois Curfman McInnes if (!rank) { 668f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6693a40ed3dSBarry Smith } else { 670f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6718965ea79SLois Curfman McInnes } 6727adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 673878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6740298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6768965ea79SLois Curfman McInnes 67739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 67839ddd567SLois Curfman McInnes but it's quick for now */ 67951022da4SBarry Smith A->insertmode = INSERT_VALUES; 6802205254eSKarl Rupp 6812205254eSKarl Rupp row = mat->rmap->rstart; 6822205254eSKarl Rupp m = mdn->A->rmap->n; 6838965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 684ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 685ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 686ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 68739ddd567SLois Curfman McInnes row++; 6888965ea79SLois Curfman McInnes } 6898965ea79SLois Curfman McInnes 6906d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6916d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6923f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 693b9b97703SBarry Smith if (!rank) { 6941a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6957da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6968965ea79SLois Curfman McInnes } 6973f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 698b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6996bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7008965ea79SLois Curfman McInnes } 7013a40ed3dSBarry Smith PetscFunctionReturn(0); 7028965ea79SLois Curfman McInnes } 7038965ea79SLois Curfman McInnes 704dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7058965ea79SLois Curfman McInnes { 706dfbe8321SBarry Smith PetscErrorCode ierr; 707ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7088965ea79SLois Curfman McInnes 709433994e6SBarry Smith PetscFunctionBegin; 710251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 711251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 712251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 713251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7140f5bd95cSBarry Smith 71532077d6dSBarry Smith if (iascii || issocket || isdraw) { 716f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7170f5bd95cSBarry Smith } else if (isbinary) { 7188491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 71911aeaf0aSBarry Smith } 7203a40ed3dSBarry Smith PetscFunctionReturn(0); 7218965ea79SLois Curfman McInnes } 7228965ea79SLois Curfman McInnes 723dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7248965ea79SLois Curfman McInnes { 7253501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7263501a2bdSLois Curfman McInnes Mat mdn = mat->A; 727dfbe8321SBarry Smith PetscErrorCode ierr; 7283966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7298965ea79SLois Curfman McInnes 7303a40ed3dSBarry Smith PetscFunctionBegin; 7314e220ebcSLois Curfman McInnes info->block_size = 1.0; 7322205254eSKarl Rupp 7334e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7342205254eSKarl Rupp 7354e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7364e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7378965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7384e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7394e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7404e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7414e220ebcSLois Curfman McInnes info->memory = isend[3]; 7424e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7438965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7443966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7452205254eSKarl Rupp 7464e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7474e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7484e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7494e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7504e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7518965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7523966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7532205254eSKarl Rupp 7544e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7554e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7564e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7574e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7584e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7598965ea79SLois Curfman McInnes } 7604e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7614e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7624e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7633a40ed3dSBarry Smith PetscFunctionReturn(0); 7648965ea79SLois Curfman McInnes } 7658965ea79SLois Curfman McInnes 766ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7678965ea79SLois Curfman McInnes { 76839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 769dfbe8321SBarry Smith PetscErrorCode ierr; 7708965ea79SLois Curfman McInnes 7713a40ed3dSBarry Smith PetscFunctionBegin; 77212c028f9SKris Buschelman switch (op) { 773512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77643674050SBarry Smith MatCheckPreallocated(A,1); 7774e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77812c028f9SKris Buschelman break; 77912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78043674050SBarry Smith MatCheckPreallocated(A,1); 7814e0d8c25SBarry Smith a->roworiented = flg; 7824e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 78312c028f9SKris Buschelman break; 7844e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 78513fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 787071fcb05SBarry Smith case MAT_SORTED_FULL: 788290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 78912c028f9SKris Buschelman break; 79012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7914e0d8c25SBarry Smith a->donotstash = flg; 79212c028f9SKris Buschelman break; 79377e54ba9SKris Buschelman case MAT_SYMMETRIC: 79477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7959a4540c5SBarry Smith case MAT_HERMITIAN: 7969a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 797600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7985d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 799290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80077e54ba9SKris Buschelman break; 80112c028f9SKris Buschelman default: 802e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8033a40ed3dSBarry Smith } 8043a40ed3dSBarry Smith PetscFunctionReturn(0); 8058965ea79SLois Curfman McInnes } 8068965ea79SLois Curfman McInnes 807dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8085b2fa520SLois Curfman McInnes { 8095b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 810637a0070SStefano Zampini const PetscScalar *l; 811637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 812dfbe8321SBarry Smith PetscErrorCode ierr; 813637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8145b2fa520SLois Curfman McInnes 8155b2fa520SLois Curfman McInnes PetscFunctionBegin; 816637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 817637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 81872d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8195b2fa520SLois Curfman McInnes if (ll) { 82072d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 821637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 822bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8235b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8245b2fa520SLois Curfman McInnes x = l[i]; 825637a0070SStefano Zampini v = vv + i; 826637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8275b2fa520SLois Curfman McInnes } 828bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 829637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8305b2fa520SLois Curfman McInnes } 8315b2fa520SLois Curfman McInnes if (rr) { 832637a0070SStefano Zampini const PetscScalar *ar; 833637a0070SStefano Zampini 834175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 835e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 836637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 837637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 838637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 839637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 840637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8415b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8425b2fa520SLois Curfman McInnes x = r[i]; 843637a0070SStefano Zampini v = vv + i*lda; 8442205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8455b2fa520SLois Curfman McInnes } 846637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 847637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8485b2fa520SLois Curfman McInnes } 849637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8505b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8515b2fa520SLois Curfman McInnes } 8525b2fa520SLois Curfman McInnes 853dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 854096963f5SLois Curfman McInnes { 8553501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 856dfbe8321SBarry Smith PetscErrorCode ierr; 85713f74950SBarry Smith PetscInt i,j; 858616b8fbbSStefano Zampini PetscMPIInt size; 859329f5518SBarry Smith PetscReal sum = 0.0; 860637a0070SStefano Zampini const PetscScalar *av,*v; 8613501a2bdSLois Curfman McInnes 8623a40ed3dSBarry Smith PetscFunctionBegin; 863637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 864637a0070SStefano Zampini v = av; 865616b8fbbSStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 866616b8fbbSStefano Zampini if (size == 1) { 867064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8683501a2bdSLois Curfman McInnes } else { 8693501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 870d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 871329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8723501a2bdSLois Curfman McInnes } 873b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8748f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 875dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8763a40ed3dSBarry Smith } else if (type == NORM_1) { 877329f5518SBarry Smith PetscReal *tmp,*tmp2; 878580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 879064f8208SBarry Smith *nrm = 0.0; 880637a0070SStefano Zampini v = av; 881d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 882d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88367e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8843501a2bdSLois Curfman McInnes } 8853501a2bdSLois Curfman McInnes } 886b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 887d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 888064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8893501a2bdSLois Curfman McInnes } 8908627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 891d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8923a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 893329f5518SBarry Smith PetscReal ntemp; 8943501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 895b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 896ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8973501a2bdSLois Curfman McInnes } 898637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8993a40ed3dSBarry Smith PetscFunctionReturn(0); 9003501a2bdSLois Curfman McInnes } 9013501a2bdSLois Curfman McInnes 902fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9033501a2bdSLois Curfman McInnes { 9043501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9053501a2bdSLois Curfman McInnes Mat B; 906d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9076849ba73SBarry Smith PetscErrorCode ierr; 908637a0070SStefano Zampini PetscInt j,i,lda; 90987828ca2SBarry Smith PetscScalar *v; 9103501a2bdSLois Curfman McInnes 9113a40ed3dSBarry Smith PetscFunctionBegin; 912cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 913ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 914d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9157adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9160298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 917637a0070SStefano Zampini } else B = *matout; 9183501a2bdSLois Curfman McInnes 919637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 920637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 921637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 922785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9233501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9241acff37aSSatish Balay for (j=0; j<n; j++) { 9253501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 926637a0070SStefano Zampini v += lda; 9273501a2bdSLois Curfman McInnes } 928637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 929606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9306d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9316d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 932cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9333501a2bdSLois Curfman McInnes *matout = B; 9343501a2bdSLois Curfman McInnes } else { 93528be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9363501a2bdSLois Curfman McInnes } 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 938096963f5SLois Curfman McInnes } 939096963f5SLois Curfman McInnes 9406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 94152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9428965ea79SLois Curfman McInnes 9434994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 944273d9f13SBarry Smith { 945dfbe8321SBarry Smith PetscErrorCode ierr; 946273d9f13SBarry Smith 947273d9f13SBarry Smith PetscFunctionBegin; 94818992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 94918992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 95018992e5dSStefano Zampini if (!A->preallocated) { 951273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 95218992e5dSStefano Zampini } 953273d9f13SBarry Smith PetscFunctionReturn(0); 954273d9f13SBarry Smith } 955273d9f13SBarry Smith 956488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 957488007eeSBarry Smith { 958488007eeSBarry Smith PetscErrorCode ierr; 959488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 960488007eeSBarry Smith 961488007eeSBarry Smith PetscFunctionBegin; 962488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 963488007eeSBarry Smith PetscFunctionReturn(0); 964488007eeSBarry Smith } 965488007eeSBarry Smith 9667087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 967ba337c44SJed Brown { 968ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 969ba337c44SJed Brown PetscErrorCode ierr; 970ba337c44SJed Brown 971ba337c44SJed Brown PetscFunctionBegin; 972ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 973ba337c44SJed Brown PetscFunctionReturn(0); 974ba337c44SJed Brown } 975ba337c44SJed Brown 976ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 977ba337c44SJed Brown { 978ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 979ba337c44SJed Brown PetscErrorCode ierr; 980ba337c44SJed Brown 981ba337c44SJed Brown PetscFunctionBegin; 982ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 983ba337c44SJed Brown PetscFunctionReturn(0); 984ba337c44SJed Brown } 985ba337c44SJed Brown 986ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 987ba337c44SJed Brown { 988ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 989ba337c44SJed Brown PetscErrorCode ierr; 990ba337c44SJed Brown 991ba337c44SJed Brown PetscFunctionBegin; 992ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 993ba337c44SJed Brown PetscFunctionReturn(0); 994ba337c44SJed Brown } 995ba337c44SJed Brown 99649a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 99749a6ff4bSBarry Smith { 99849a6ff4bSBarry Smith PetscErrorCode ierr; 999637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 100049a6ff4bSBarry Smith 100149a6ff4bSBarry Smith PetscFunctionBegin; 1002637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1003637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1004637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 100549a6ff4bSBarry Smith PetscFunctionReturn(0); 100649a6ff4bSBarry Smith } 100749a6ff4bSBarry Smith 100852c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 100952c5f739Sprj- 10100716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10110716a85fSBarry Smith { 10120716a85fSBarry Smith PetscErrorCode ierr; 10130716a85fSBarry Smith PetscInt i,n; 10140716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10150716a85fSBarry Smith PetscReal *work; 10160716a85fSBarry Smith 10170716a85fSBarry Smith PetscFunctionBegin; 10180298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1019785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10200716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10210716a85fSBarry Smith if (type == NORM_2) { 10220716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10230716a85fSBarry Smith } 10240716a85fSBarry Smith if (type == NORM_INFINITY) { 1025b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10260716a85fSBarry Smith } else { 1027b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10280716a85fSBarry Smith } 10290716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10300716a85fSBarry Smith if (type == NORM_2) { 10318f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10320716a85fSBarry Smith } 10330716a85fSBarry Smith PetscFunctionReturn(0); 10340716a85fSBarry Smith } 10350716a85fSBarry Smith 1036637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10376947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10386947451fSStefano Zampini { 10396947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10406947451fSStefano Zampini PetscErrorCode ierr; 10416947451fSStefano Zampini PetscInt lda; 10426947451fSStefano Zampini 10436947451fSStefano Zampini PetscFunctionBegin; 1044616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1045616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10466947451fSStefano Zampini if (!a->cvec) { 10476947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1048616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10496947451fSStefano Zampini } 10506947451fSStefano Zampini a->vecinuse = col + 1; 10516947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10526947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10536947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10546947451fSStefano Zampini *v = a->cvec; 10556947451fSStefano Zampini PetscFunctionReturn(0); 10566947451fSStefano Zampini } 10576947451fSStefano Zampini 10586947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10596947451fSStefano Zampini { 10606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10616947451fSStefano Zampini PetscErrorCode ierr; 10626947451fSStefano Zampini 10636947451fSStefano Zampini PetscFunctionBegin; 10645ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10656947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10666947451fSStefano Zampini a->vecinuse = 0; 10676947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10686947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10696947451fSStefano Zampini *v = NULL; 10706947451fSStefano Zampini PetscFunctionReturn(0); 10716947451fSStefano Zampini } 10726947451fSStefano Zampini 10736947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10746947451fSStefano Zampini { 10756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10766947451fSStefano Zampini PetscInt lda; 10776947451fSStefano Zampini PetscErrorCode ierr; 10786947451fSStefano Zampini 10796947451fSStefano Zampini PetscFunctionBegin; 1080616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1081616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10826947451fSStefano Zampini if (!a->cvec) { 10836947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1084616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10856947451fSStefano Zampini } 10866947451fSStefano Zampini a->vecinuse = col + 1; 10876947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10886947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10896947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10906947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10916947451fSStefano Zampini *v = a->cvec; 10926947451fSStefano Zampini PetscFunctionReturn(0); 10936947451fSStefano Zampini } 10946947451fSStefano Zampini 10956947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10966947451fSStefano Zampini { 10976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10986947451fSStefano Zampini PetscErrorCode ierr; 10996947451fSStefano Zampini 11006947451fSStefano Zampini PetscFunctionBegin; 1101616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1102616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11036947451fSStefano Zampini a->vecinuse = 0; 11046947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11056947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11066947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11076947451fSStefano Zampini *v = NULL; 11086947451fSStefano Zampini PetscFunctionReturn(0); 11096947451fSStefano Zampini } 11106947451fSStefano Zampini 11116947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11126947451fSStefano Zampini { 11136947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11146947451fSStefano Zampini PetscErrorCode ierr; 11156947451fSStefano Zampini PetscInt lda; 11166947451fSStefano Zampini 11176947451fSStefano Zampini PetscFunctionBegin; 1118616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1119616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11206947451fSStefano Zampini if (!a->cvec) { 11216947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1122616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11236947451fSStefano Zampini } 11246947451fSStefano Zampini a->vecinuse = col + 1; 11256947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11266947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11276947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11286947451fSStefano Zampini *v = a->cvec; 11296947451fSStefano Zampini PetscFunctionReturn(0); 11306947451fSStefano Zampini } 11316947451fSStefano Zampini 11326947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11336947451fSStefano Zampini { 11346947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11356947451fSStefano Zampini PetscErrorCode ierr; 11366947451fSStefano Zampini 11376947451fSStefano Zampini PetscFunctionBegin; 1138616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1139616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11406947451fSStefano Zampini a->vecinuse = 0; 11416947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11426947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11436947451fSStefano Zampini *v = NULL; 11446947451fSStefano Zampini PetscFunctionReturn(0); 11456947451fSStefano Zampini } 11466947451fSStefano Zampini 1147637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1148637a0070SStefano Zampini { 1149637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1150637a0070SStefano Zampini PetscErrorCode ierr; 1151637a0070SStefano Zampini 1152637a0070SStefano Zampini PetscFunctionBegin; 1153616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1154616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1155637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1156637a0070SStefano Zampini PetscFunctionReturn(0); 1157637a0070SStefano Zampini } 1158637a0070SStefano Zampini 1159637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1160637a0070SStefano Zampini { 1161637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1162637a0070SStefano Zampini PetscErrorCode ierr; 1163637a0070SStefano Zampini 1164637a0070SStefano Zampini PetscFunctionBegin; 1165616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1166616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1167637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1168637a0070SStefano Zampini PetscFunctionReturn(0); 1169637a0070SStefano Zampini } 1170637a0070SStefano Zampini 1171d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1172d5ea218eSStefano Zampini { 1173d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1174d5ea218eSStefano Zampini PetscErrorCode ierr; 1175d5ea218eSStefano Zampini 1176d5ea218eSStefano Zampini PetscFunctionBegin; 1177616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1178616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1179d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1180d5ea218eSStefano Zampini PetscFunctionReturn(0); 1181d5ea218eSStefano Zampini } 1182d5ea218eSStefano Zampini 1183637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1184637a0070SStefano Zampini { 1185637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1186637a0070SStefano Zampini PetscErrorCode ierr; 1187637a0070SStefano Zampini 1188637a0070SStefano Zampini PetscFunctionBegin; 1189637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1190637a0070SStefano Zampini PetscFunctionReturn(0); 1191637a0070SStefano Zampini } 1192637a0070SStefano Zampini 1193637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1194637a0070SStefano Zampini { 1195637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1196637a0070SStefano Zampini PetscErrorCode ierr; 1197637a0070SStefano Zampini 1198637a0070SStefano Zampini PetscFunctionBegin; 1199637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1200637a0070SStefano Zampini PetscFunctionReturn(0); 1201637a0070SStefano Zampini } 1202637a0070SStefano Zampini 1203637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1204637a0070SStefano Zampini { 1205637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1206637a0070SStefano Zampini PetscErrorCode ierr; 1207637a0070SStefano Zampini 1208637a0070SStefano Zampini PetscFunctionBegin; 1209637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1210637a0070SStefano Zampini PetscFunctionReturn(0); 1211637a0070SStefano Zampini } 1212637a0070SStefano Zampini 1213637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1214637a0070SStefano Zampini { 1215637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1216637a0070SStefano Zampini PetscErrorCode ierr; 1217637a0070SStefano Zampini 1218637a0070SStefano Zampini PetscFunctionBegin; 1219637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1220637a0070SStefano Zampini PetscFunctionReturn(0); 1221637a0070SStefano Zampini } 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1224637a0070SStefano Zampini { 1225637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1226637a0070SStefano Zampini PetscErrorCode ierr; 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini PetscFunctionBegin; 1229637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1230637a0070SStefano Zampini PetscFunctionReturn(0); 1231637a0070SStefano Zampini } 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1234637a0070SStefano Zampini { 1235637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1236637a0070SStefano Zampini PetscErrorCode ierr; 1237637a0070SStefano Zampini 1238637a0070SStefano Zampini PetscFunctionBegin; 1239637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1240637a0070SStefano Zampini PetscFunctionReturn(0); 1241637a0070SStefano Zampini } 1242637a0070SStefano Zampini 12436947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12446947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12456947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12466947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12476947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12486947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12495ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12506947451fSStefano Zampini 1251637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1252637a0070SStefano Zampini { 1253637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1254637a0070SStefano Zampini PetscErrorCode ierr; 1255637a0070SStefano Zampini 1256637a0070SStefano Zampini PetscFunctionBegin; 1257616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1258616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1259637a0070SStefano Zampini if (d->A) { 1260637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1261637a0070SStefano Zampini } 1262637a0070SStefano Zampini mat->boundtocpu = bind; 12636947451fSStefano Zampini if (!bind) { 12646947451fSStefano Zampini PetscBool iscuda; 12656947451fSStefano Zampini 12666947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12676947451fSStefano Zampini if (!iscuda) { 12686947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1269616b8fbbSStefano Zampini } 1270616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1271616b8fbbSStefano Zampini if (!iscuda) { 12725ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12736947451fSStefano Zampini } 12746947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12756947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12766947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12776947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12786947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12796947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12806947451fSStefano Zampini } else { 12816947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12826947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12856947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12866947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1287616b8fbbSStefano Zampini } 1288616b8fbbSStefano Zampini if (d->cmat) { 1289616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 12906947451fSStefano Zampini } 1291637a0070SStefano Zampini PetscFunctionReturn(0); 1292637a0070SStefano Zampini } 1293637a0070SStefano Zampini 1294637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1295637a0070SStefano Zampini { 1296637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1297637a0070SStefano Zampini PetscErrorCode ierr; 1298637a0070SStefano Zampini PetscBool iscuda; 1299637a0070SStefano Zampini 1300637a0070SStefano Zampini PetscFunctionBegin; 1301d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1302637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1303637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1304637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1305637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1306637a0070SStefano Zampini if (!d->A) { 1307637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1308637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1309637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1310637a0070SStefano Zampini } 1311637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1312637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1313637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1314637a0070SStefano Zampini PetscFunctionReturn(0); 1315637a0070SStefano Zampini } 1316637a0070SStefano Zampini #endif 1317637a0070SStefano Zampini 131873a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 131973a71a0fSBarry Smith { 132073a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 132173a71a0fSBarry Smith PetscErrorCode ierr; 132273a71a0fSBarry Smith 132373a71a0fSBarry Smith PetscFunctionBegin; 1324637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 132573a71a0fSBarry Smith PetscFunctionReturn(0); 132673a71a0fSBarry Smith } 132773a71a0fSBarry Smith 13283b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13293b49f96aSBarry Smith { 13303b49f96aSBarry Smith PetscFunctionBegin; 13313b49f96aSBarry Smith *missing = PETSC_FALSE; 13323b49f96aSBarry Smith PetscFunctionReturn(0); 13333b49f96aSBarry Smith } 13343b49f96aSBarry Smith 13354222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1336cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13376718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13386718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13396718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13406718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1341cc48ffa7SToby Isaac 13428965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 134309dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134409dc0095SBarry Smith MatGetRow_MPIDense, 134509dc0095SBarry Smith MatRestoreRow_MPIDense, 134609dc0095SBarry Smith MatMult_MPIDense, 134797304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13487c922b88SBarry Smith MatMultTranspose_MPIDense, 13497c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 13508965ea79SLois Curfman McInnes 0, 135109dc0095SBarry Smith 0, 135209dc0095SBarry Smith 0, 135397304618SKris Buschelman /* 10*/ 0, 135409dc0095SBarry Smith 0, 135509dc0095SBarry Smith 0, 135609dc0095SBarry Smith 0, 135709dc0095SBarry Smith MatTranspose_MPIDense, 135897304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13596e4ee0c6SHong Zhang MatEqual_MPIDense, 136009dc0095SBarry Smith MatGetDiagonal_MPIDense, 13615b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 136209dc0095SBarry Smith MatNorm_MPIDense, 136397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136409dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136509dc0095SBarry Smith MatSetOption_MPIDense, 136609dc0095SBarry Smith MatZeroEntries_MPIDense, 1367d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1368919b68f7SBarry Smith 0, 136901b82886SBarry Smith 0, 137001b82886SBarry Smith 0, 137101b82886SBarry Smith 0, 13724994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1373273d9f13SBarry Smith 0, 137409dc0095SBarry Smith 0, 1375c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 13768c778c55SBarry Smith 0, 1377d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 137809dc0095SBarry Smith 0, 137909dc0095SBarry Smith 0, 138009dc0095SBarry Smith 0, 138109dc0095SBarry Smith 0, 1382d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13837dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 138409dc0095SBarry Smith 0, 138509dc0095SBarry Smith MatGetValues_MPIDense, 138609dc0095SBarry Smith 0, 1387d519adbfSMatthew Knepley /* 44*/ 0, 138809dc0095SBarry Smith MatScale_MPIDense, 13897d68702bSBarry Smith MatShift_Basic, 139009dc0095SBarry Smith 0, 139109dc0095SBarry Smith 0, 139273a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 139309dc0095SBarry Smith 0, 139409dc0095SBarry Smith 0, 139509dc0095SBarry Smith 0, 139609dc0095SBarry Smith 0, 1397d519adbfSMatthew Knepley /* 54*/ 0, 139809dc0095SBarry Smith 0, 139909dc0095SBarry Smith 0, 140009dc0095SBarry Smith 0, 140109dc0095SBarry Smith 0, 14027dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1403b9b97703SBarry Smith MatDestroy_MPIDense, 1404b9b97703SBarry Smith MatView_MPIDense, 1405357abbc8SBarry Smith 0, 140697304618SKris Buschelman 0, 1407d519adbfSMatthew Knepley /* 64*/ 0, 140897304618SKris Buschelman 0, 140997304618SKris Buschelman 0, 141097304618SKris Buschelman 0, 141197304618SKris Buschelman 0, 1412d519adbfSMatthew Knepley /* 69*/ 0, 141397304618SKris Buschelman 0, 141497304618SKris Buschelman 0, 141597304618SKris Buschelman 0, 141697304618SKris Buschelman 0, 1417d519adbfSMatthew Knepley /* 74*/ 0, 141897304618SKris Buschelman 0, 141997304618SKris Buschelman 0, 142097304618SKris Buschelman 0, 142197304618SKris Buschelman 0, 1422d519adbfSMatthew Knepley /* 79*/ 0, 142397304618SKris Buschelman 0, 142497304618SKris Buschelman 0, 142597304618SKris Buschelman 0, 14265bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1427865e5f61SKris Buschelman 0, 1428865e5f61SKris Buschelman 0, 1429865e5f61SKris Buschelman 0, 1430865e5f61SKris Buschelman 0, 1431865e5f61SKris Buschelman 0, 14324222ddf1SHong Zhang /* 89*/ 0, 14334222ddf1SHong Zhang 0, 14346718818eSStefano Zampini 0, 14352fbe02b9SBarry Smith 0, 1436ba337c44SJed Brown 0, 1437d519adbfSMatthew Knepley /* 94*/ 0, 14384222ddf1SHong Zhang 0, 14396718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1440cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1441ba337c44SJed Brown 0, 14424222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1443ba337c44SJed Brown 0, 1444ba337c44SJed Brown 0, 1445ba337c44SJed Brown MatConjugate_MPIDense, 1446ba337c44SJed Brown 0, 1447ba337c44SJed Brown /*104*/ 0, 1448ba337c44SJed Brown MatRealPart_MPIDense, 1449ba337c44SJed Brown MatImaginaryPart_MPIDense, 145086d161a7SShri Abhyankar 0, 145186d161a7SShri Abhyankar 0, 145286d161a7SShri Abhyankar /*109*/ 0, 145386d161a7SShri Abhyankar 0, 145486d161a7SShri Abhyankar 0, 145549a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14563b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 145786d161a7SShri Abhyankar /*114*/ 0, 145886d161a7SShri Abhyankar 0, 145986d161a7SShri Abhyankar 0, 146086d161a7SShri Abhyankar 0, 146186d161a7SShri Abhyankar 0, 146286d161a7SShri Abhyankar /*119*/ 0, 146386d161a7SShri Abhyankar 0, 146486d161a7SShri Abhyankar 0, 14650716a85fSBarry Smith 0, 14660716a85fSBarry Smith 0, 14670716a85fSBarry Smith /*124*/ 0, 14683964eb88SJed Brown MatGetColumnNorms_MPIDense, 14693964eb88SJed Brown 0, 14703964eb88SJed Brown 0, 14713964eb88SJed Brown 0, 14723964eb88SJed Brown /*129*/ 0, 14734222ddf1SHong Zhang 0, 14746718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1475cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 14763964eb88SJed Brown 0, 14773964eb88SJed Brown /*134*/ 0, 14783964eb88SJed Brown 0, 14793964eb88SJed Brown 0, 14803964eb88SJed Brown 0, 14813964eb88SJed Brown 0, 14823964eb88SJed Brown /*139*/ 0, 1483f9426fe0SMark Adams 0, 148494e2cb23SJakub Kruzik 0, 148594e2cb23SJakub Kruzik 0, 148694e2cb23SJakub Kruzik 0, 14874222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 14884222ddf1SHong Zhang /*145*/ 0, 14894222ddf1SHong Zhang 0, 14904222ddf1SHong Zhang 0 1491ba337c44SJed Brown }; 14928965ea79SLois Curfman McInnes 14937087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1494a23d5eceSKris Buschelman { 1495637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1496637a0070SStefano Zampini PetscBool iscuda; 1497dfbe8321SBarry Smith PetscErrorCode ierr; 1498a23d5eceSKris Buschelman 1499a23d5eceSKris Buschelman PetscFunctionBegin; 1500616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 150134ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 150234ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1503637a0070SStefano Zampini if (!a->A) { 1504f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15053bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1506637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1507637a0070SStefano Zampini } 1508637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1509637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1510637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1511637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1512a23d5eceSKris Buschelman PetscFunctionReturn(0); 1513a23d5eceSKris Buschelman } 1514a23d5eceSKris Buschelman 151565b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1516cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15178baccfbdSHong Zhang { 15188ea901baSHong Zhang Mat mat_elemental; 15198ea901baSHong Zhang PetscErrorCode ierr; 152032d7a744SHong Zhang PetscScalar *v; 152132d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15228ea901baSHong Zhang 15238baccfbdSHong Zhang PetscFunctionBegin; 1524378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1525378336b6SHong Zhang mat_elemental = *newmat; 1526378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1527378336b6SHong Zhang } else { 1528378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1529378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1530378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1531378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 153232d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1533378336b6SHong Zhang } 1534378336b6SHong Zhang 153532d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 153632d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 153732d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15388ea901baSHong Zhang 1539637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 154032d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 154132d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15428ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15438ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 154432d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 154532d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 15468ea901baSHong Zhang 1547511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 154828be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 15498ea901baSHong Zhang } else { 15508ea901baSHong Zhang *newmat = mat_elemental; 15518ea901baSHong Zhang } 15528baccfbdSHong Zhang PetscFunctionReturn(0); 15538baccfbdSHong Zhang } 155465b80a83SHong Zhang #endif 15558baccfbdSHong Zhang 1556af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 155786aefd0dSHong Zhang { 155886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 155986aefd0dSHong Zhang PetscErrorCode ierr; 156086aefd0dSHong Zhang 156186aefd0dSHong Zhang PetscFunctionBegin; 156286aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 156386aefd0dSHong Zhang PetscFunctionReturn(0); 156486aefd0dSHong Zhang } 156586aefd0dSHong Zhang 1566af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 156786aefd0dSHong Zhang { 156886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156986aefd0dSHong Zhang PetscErrorCode ierr; 157086aefd0dSHong Zhang 157186aefd0dSHong Zhang PetscFunctionBegin; 157286aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 157386aefd0dSHong Zhang PetscFunctionReturn(0); 157486aefd0dSHong Zhang } 157586aefd0dSHong Zhang 157694e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 157794e2cb23SJakub Kruzik { 157894e2cb23SJakub Kruzik PetscErrorCode ierr; 157994e2cb23SJakub Kruzik Mat_MPIDense *mat; 158094e2cb23SJakub Kruzik PetscInt m,nloc,N; 158194e2cb23SJakub Kruzik 158294e2cb23SJakub Kruzik PetscFunctionBegin; 158394e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 158494e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 158594e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 158694e2cb23SJakub Kruzik PetscInt sum; 158794e2cb23SJakub Kruzik 158894e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 158994e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 159094e2cb23SJakub Kruzik } 159194e2cb23SJakub Kruzik /* Check sum(n) = N */ 159294e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 159394e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 159494e2cb23SJakub Kruzik 159594e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 159694e2cb23SJakub Kruzik } 159794e2cb23SJakub Kruzik 159894e2cb23SJakub Kruzik /* numeric phase */ 159994e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 160094e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 160194e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160294e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160394e2cb23SJakub Kruzik PetscFunctionReturn(0); 160494e2cb23SJakub Kruzik } 160594e2cb23SJakub Kruzik 1606637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1607637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1608637a0070SStefano Zampini { 1609637a0070SStefano Zampini Mat B; 1610637a0070SStefano Zampini Mat_MPIDense *m; 1611637a0070SStefano Zampini PetscErrorCode ierr; 1612637a0070SStefano Zampini 1613637a0070SStefano Zampini PetscFunctionBegin; 1614637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1615637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1616637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1617637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1618637a0070SStefano Zampini } 1619637a0070SStefano Zampini 1620637a0070SStefano Zampini B = *newmat; 1621637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1622637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1623637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1624637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1625637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1626637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16276718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1628637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16296718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1630637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1631637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1632637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1633637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1634637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1635637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1636637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1637637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1638d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1639637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1640637a0070SStefano Zampini if (m->A) { 1641637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1642637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1643637a0070SStefano Zampini } 1644637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1645637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1646637a0070SStefano Zampini PetscFunctionReturn(0); 1647637a0070SStefano Zampini } 1648637a0070SStefano Zampini 1649637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1650637a0070SStefano Zampini { 1651637a0070SStefano Zampini Mat B; 1652637a0070SStefano Zampini Mat_MPIDense *m; 1653637a0070SStefano Zampini PetscErrorCode ierr; 1654637a0070SStefano Zampini 1655637a0070SStefano Zampini PetscFunctionBegin; 1656637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1657637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1658637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1659637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1660637a0070SStefano Zampini } 1661637a0070SStefano Zampini 1662637a0070SStefano Zampini B = *newmat; 1663637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1664637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1665637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1666637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1667637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 16686718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1669637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 16706718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1671637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1672637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1673637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1674637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1675637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1676637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1677637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1678637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1679d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1680637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1681637a0070SStefano Zampini if (m->A) { 1682637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1683637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1684637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1685637a0070SStefano Zampini } else { 1686637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1687637a0070SStefano Zampini } 1688637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1689637a0070SStefano Zampini 1690637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1691637a0070SStefano Zampini PetscFunctionReturn(0); 1692637a0070SStefano Zampini } 1693637a0070SStefano Zampini #endif 1694637a0070SStefano Zampini 16956947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16966947451fSStefano Zampini { 16976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16986947451fSStefano Zampini PetscErrorCode ierr; 16996947451fSStefano Zampini PetscInt lda; 17006947451fSStefano Zampini 17016947451fSStefano Zampini PetscFunctionBegin; 1702616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1703616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17046947451fSStefano Zampini if (!a->cvec) { 17056947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17066947451fSStefano Zampini } 17076947451fSStefano Zampini a->vecinuse = col + 1; 17086947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17096947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17106947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17116947451fSStefano Zampini *v = a->cvec; 17126947451fSStefano Zampini PetscFunctionReturn(0); 17136947451fSStefano Zampini } 17146947451fSStefano Zampini 17156947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17166947451fSStefano Zampini { 17176947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17186947451fSStefano Zampini PetscErrorCode ierr; 17196947451fSStefano Zampini 17206947451fSStefano Zampini PetscFunctionBegin; 17215ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17226947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17236947451fSStefano Zampini a->vecinuse = 0; 17246947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17256947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17266947451fSStefano Zampini *v = NULL; 17276947451fSStefano Zampini PetscFunctionReturn(0); 17286947451fSStefano Zampini } 17296947451fSStefano Zampini 17306947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17316947451fSStefano Zampini { 17326947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17336947451fSStefano Zampini PetscErrorCode ierr; 17346947451fSStefano Zampini PetscInt lda; 17356947451fSStefano Zampini 17366947451fSStefano Zampini PetscFunctionBegin; 1737616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1738616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17396947451fSStefano Zampini if (!a->cvec) { 17406947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17416947451fSStefano Zampini } 17426947451fSStefano Zampini a->vecinuse = col + 1; 17436947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17446947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17456947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17466947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 17476947451fSStefano Zampini *v = a->cvec; 17486947451fSStefano Zampini PetscFunctionReturn(0); 17496947451fSStefano Zampini } 17506947451fSStefano Zampini 17516947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17526947451fSStefano Zampini { 17536947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17546947451fSStefano Zampini PetscErrorCode ierr; 17556947451fSStefano Zampini 17566947451fSStefano Zampini PetscFunctionBegin; 1757616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1758616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17596947451fSStefano Zampini a->vecinuse = 0; 17606947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17616947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17626947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17636947451fSStefano Zampini *v = NULL; 17646947451fSStefano Zampini PetscFunctionReturn(0); 17656947451fSStefano Zampini } 17666947451fSStefano Zampini 17676947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17686947451fSStefano Zampini { 17696947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17706947451fSStefano Zampini PetscErrorCode ierr; 17716947451fSStefano Zampini PetscInt lda; 17726947451fSStefano Zampini 17736947451fSStefano Zampini PetscFunctionBegin; 1774616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1775616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17766947451fSStefano Zampini if (!a->cvec) { 17776947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17786947451fSStefano Zampini } 17796947451fSStefano Zampini a->vecinuse = col + 1; 17806947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17816947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17826947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17836947451fSStefano Zampini *v = a->cvec; 17846947451fSStefano Zampini PetscFunctionReturn(0); 17856947451fSStefano Zampini } 17866947451fSStefano Zampini 17876947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17886947451fSStefano Zampini { 17896947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17906947451fSStefano Zampini PetscErrorCode ierr; 17916947451fSStefano Zampini 17926947451fSStefano Zampini PetscFunctionBegin; 1793616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1794616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17956947451fSStefano Zampini a->vecinuse = 0; 17966947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17976947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17986947451fSStefano Zampini *v = NULL; 17996947451fSStefano Zampini PetscFunctionReturn(0); 18006947451fSStefano Zampini } 18016947451fSStefano Zampini 18025ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18035ea7661aSPierre Jolivet { 18045ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1805616b8fbbSStefano Zampini Mat_MPIDense *c; 18065ea7661aSPierre Jolivet PetscErrorCode ierr; 1807616b8fbbSStefano Zampini MPI_Comm comm; 1808616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18095ea7661aSPierre Jolivet 18105ea7661aSPierre Jolivet PetscFunctionBegin; 1811616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1812616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1813616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18145ea7661aSPierre Jolivet if (!a->cmat) { 1815616b8fbbSStefano Zampini setup = PETSC_TRUE; 1816616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1817616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1818616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1819616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1820616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1821616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1822616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1823616b8fbbSStefano Zampini setup = PETSC_TRUE; 1824616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1825616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1826616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1827616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18285ea7661aSPierre Jolivet } 1829616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1830616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1831616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1832616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1833616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1834616b8fbbSStefano Zampini } 1835616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1836616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18375ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18385ea7661aSPierre Jolivet *v = a->cmat; 18395ea7661aSPierre Jolivet PetscFunctionReturn(0); 18405ea7661aSPierre Jolivet } 18415ea7661aSPierre Jolivet 18425ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18435ea7661aSPierre Jolivet { 18445ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1845616b8fbbSStefano Zampini Mat_MPIDense *c; 18465ea7661aSPierre Jolivet PetscErrorCode ierr; 18475ea7661aSPierre Jolivet 18485ea7661aSPierre Jolivet PetscFunctionBegin; 1849616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1850616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1851616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18525ea7661aSPierre Jolivet a->matinuse = 0; 1853616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1854616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 18555ea7661aSPierre Jolivet *v = NULL; 18565ea7661aSPierre Jolivet PetscFunctionReturn(0); 18575ea7661aSPierre Jolivet } 18585ea7661aSPierre Jolivet 18598cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1860273d9f13SBarry Smith { 1861273d9f13SBarry Smith Mat_MPIDense *a; 1862dfbe8321SBarry Smith PetscErrorCode ierr; 1863273d9f13SBarry Smith 1864273d9f13SBarry Smith PetscFunctionBegin; 1865b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1866b0a32e0cSBarry Smith mat->data = (void*)a; 1867273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1868273d9f13SBarry Smith 1869273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1870273d9f13SBarry Smith 1871273d9f13SBarry Smith /* build cache for off array entries formed */ 1872273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18732205254eSKarl Rupp 1874ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1875273d9f13SBarry Smith 1876273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1877273d9f13SBarry Smith a->lvec = 0; 1878273d9f13SBarry Smith a->Mvctx = 0; 1879273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1880273d9f13SBarry Smith 188149a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1882ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1883bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 18848572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 18858572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 18868572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 18876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 18886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1889d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1890d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1891d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 18926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 18936947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 18946947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 18956947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 18966947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 18976947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 18985ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 18995ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19008baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19018baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19028baccfbdSHong Zhang #endif 1903d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1904d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1905d24d4204SJose E. Roman #endif 1906637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1907637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1908637a0070SStefano Zampini #endif 1909bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19104222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19114222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19126718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19136718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19146718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19156718818eSStefano Zampini #endif 19168949adfdSHong Zhang 1917af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1918af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 191938aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1920273d9f13SBarry Smith PetscFunctionReturn(0); 1921273d9f13SBarry Smith } 1922273d9f13SBarry Smith 1923209238afSKris Buschelman /*MC 1924637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1925637a0070SStefano Zampini 1926637a0070SStefano Zampini Options Database Keys: 1927637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1928637a0070SStefano Zampini 1929637a0070SStefano Zampini Level: beginner 1930637a0070SStefano Zampini 1931637a0070SStefano Zampini .seealso: 1932637a0070SStefano Zampini 1933637a0070SStefano Zampini M*/ 1934637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1935637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1936637a0070SStefano Zampini { 1937637a0070SStefano Zampini PetscErrorCode ierr; 1938637a0070SStefano Zampini 1939637a0070SStefano Zampini PetscFunctionBegin; 1940637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1941637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1942637a0070SStefano Zampini PetscFunctionReturn(0); 1943637a0070SStefano Zampini } 1944637a0070SStefano Zampini #endif 1945637a0070SStefano Zampini 1946637a0070SStefano Zampini /*MC 1947002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1948209238afSKris Buschelman 1949209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1950209238afSKris Buschelman and MATMPIDENSE otherwise. 1951209238afSKris Buschelman 1952209238afSKris Buschelman Options Database Keys: 1953209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1954209238afSKris Buschelman 1955209238afSKris Buschelman Level: beginner 1956209238afSKris Buschelman 195701b82886SBarry Smith 19586947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19596947451fSStefano Zampini M*/ 19606947451fSStefano Zampini 19616947451fSStefano Zampini /*MC 19626947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19636947451fSStefano Zampini 19646947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19656947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19666947451fSStefano Zampini 19676947451fSStefano Zampini Options Database Keys: 19686947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19696947451fSStefano Zampini 19706947451fSStefano Zampini Level: beginner 19716947451fSStefano Zampini 19726947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1973209238afSKris Buschelman M*/ 1974209238afSKris Buschelman 1975273d9f13SBarry Smith /*@C 1976273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1977273d9f13SBarry Smith 19788f490ea3SStefano Zampini Collective 1979273d9f13SBarry Smith 1980273d9f13SBarry Smith Input Parameters: 19811c4f3114SJed Brown . B - the matrix 19820298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1983273d9f13SBarry Smith to control all matrix memory allocation. 1984273d9f13SBarry Smith 1985273d9f13SBarry Smith Notes: 1986273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1987273d9f13SBarry Smith storage by columns. 1988273d9f13SBarry Smith 1989273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1990273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19910298fd71SBarry Smith set data=NULL. 1992273d9f13SBarry Smith 1993273d9f13SBarry Smith Level: intermediate 1994273d9f13SBarry Smith 1995273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1996273d9f13SBarry Smith @*/ 19971c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1998273d9f13SBarry Smith { 19994ac538c5SBarry Smith PetscErrorCode ierr; 2000273d9f13SBarry Smith 2001273d9f13SBarry Smith PetscFunctionBegin; 2002d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20031c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2004273d9f13SBarry Smith PetscFunctionReturn(0); 2005273d9f13SBarry Smith } 2006273d9f13SBarry Smith 2007d3042a70SBarry Smith /*@ 2008637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2009d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2010d3042a70SBarry Smith into a matrix 2011d3042a70SBarry Smith 2012d3042a70SBarry Smith Not Collective 2013d3042a70SBarry Smith 2014d3042a70SBarry Smith Input Parameters: 2015d3042a70SBarry Smith + mat - the matrix 2016d3042a70SBarry Smith - array - the array in column major order 2017d3042a70SBarry Smith 2018d3042a70SBarry Smith Notes: 2019d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2020d3042a70SBarry Smith freed when the matrix is destroyed. 2021d3042a70SBarry Smith 2022d3042a70SBarry Smith Level: developer 2023d3042a70SBarry Smith 2024d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2025d3042a70SBarry Smith 2026d3042a70SBarry Smith @*/ 2027637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2028d3042a70SBarry Smith { 2029d3042a70SBarry Smith PetscErrorCode ierr; 2030637a0070SStefano Zampini 2031d3042a70SBarry Smith PetscFunctionBegin; 2032d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2033d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2034d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2035637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2036637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2037637a0070SStefano Zampini #endif 2038d3042a70SBarry Smith PetscFunctionReturn(0); 2039d3042a70SBarry Smith } 2040d3042a70SBarry Smith 2041d3042a70SBarry Smith /*@ 2042d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2043d3042a70SBarry Smith 2044d3042a70SBarry Smith Not Collective 2045d3042a70SBarry Smith 2046d3042a70SBarry Smith Input Parameters: 2047d3042a70SBarry Smith . mat - the matrix 2048d3042a70SBarry Smith 2049d3042a70SBarry Smith Notes: 2050d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2051d3042a70SBarry Smith 2052d3042a70SBarry Smith Level: developer 2053d3042a70SBarry Smith 2054d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2055d3042a70SBarry Smith 2056d3042a70SBarry Smith @*/ 2057d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2058d3042a70SBarry Smith { 2059d3042a70SBarry Smith PetscErrorCode ierr; 2060637a0070SStefano Zampini 2061d3042a70SBarry Smith PetscFunctionBegin; 2062d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2063d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2064d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2065d3042a70SBarry Smith PetscFunctionReturn(0); 2066d3042a70SBarry Smith } 2067d3042a70SBarry Smith 2068d5ea218eSStefano Zampini /*@ 2069d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2070d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2071d5ea218eSStefano Zampini into a matrix 2072d5ea218eSStefano Zampini 2073d5ea218eSStefano Zampini Not Collective 2074d5ea218eSStefano Zampini 2075d5ea218eSStefano Zampini Input Parameters: 2076d5ea218eSStefano Zampini + mat - the matrix 2077d5ea218eSStefano Zampini - array - the array in column major order 2078d5ea218eSStefano Zampini 2079d5ea218eSStefano Zampini Notes: 2080d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2081d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2082d5ea218eSStefano Zampini 2083d5ea218eSStefano Zampini Level: developer 2084d5ea218eSStefano Zampini 2085d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2086d5ea218eSStefano Zampini @*/ 2087d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2088d5ea218eSStefano Zampini { 2089d5ea218eSStefano Zampini PetscErrorCode ierr; 2090d5ea218eSStefano Zampini 2091d5ea218eSStefano Zampini PetscFunctionBegin; 2092d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2093d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2094d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2095d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2096d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2097d5ea218eSStefano Zampini #endif 2098d5ea218eSStefano Zampini PetscFunctionReturn(0); 2099d5ea218eSStefano Zampini } 2100d5ea218eSStefano Zampini 2101637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21028965ea79SLois Curfman McInnes /*@C 2103637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2104637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2105637a0070SStefano Zampini into a matrix 2106637a0070SStefano Zampini 2107637a0070SStefano Zampini Not Collective 2108637a0070SStefano Zampini 2109637a0070SStefano Zampini Input Parameters: 2110637a0070SStefano Zampini + mat - the matrix 2111637a0070SStefano Zampini - array - the array in column major order 2112637a0070SStefano Zampini 2113637a0070SStefano Zampini Notes: 2114637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2115637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2116637a0070SStefano Zampini 2117637a0070SStefano Zampini Level: developer 2118637a0070SStefano Zampini 2119637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2120637a0070SStefano Zampini @*/ 2121637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2122637a0070SStefano Zampini { 2123637a0070SStefano Zampini PetscErrorCode ierr; 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini PetscFunctionBegin; 2126d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2127637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2128637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2129637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2130637a0070SStefano Zampini PetscFunctionReturn(0); 2131637a0070SStefano Zampini } 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini /*@C 2134637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2135637a0070SStefano Zampini 2136637a0070SStefano Zampini Not Collective 2137637a0070SStefano Zampini 2138637a0070SStefano Zampini Input Parameters: 2139637a0070SStefano Zampini . mat - the matrix 2140637a0070SStefano Zampini 2141637a0070SStefano Zampini Notes: 2142637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2143637a0070SStefano Zampini 2144637a0070SStefano Zampini Level: developer 2145637a0070SStefano Zampini 2146637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2147637a0070SStefano Zampini 2148637a0070SStefano Zampini @*/ 2149637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2150637a0070SStefano Zampini { 2151637a0070SStefano Zampini PetscErrorCode ierr; 2152637a0070SStefano Zampini 2153637a0070SStefano Zampini PetscFunctionBegin; 2154d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2155637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2156637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2157637a0070SStefano Zampini PetscFunctionReturn(0); 2158637a0070SStefano Zampini } 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini /*@C 2161d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2162d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2163d5ea218eSStefano Zampini into a matrix 2164d5ea218eSStefano Zampini 2165d5ea218eSStefano Zampini Not Collective 2166d5ea218eSStefano Zampini 2167d5ea218eSStefano Zampini Input Parameters: 2168d5ea218eSStefano Zampini + mat - the matrix 2169d5ea218eSStefano Zampini - array - the array in column major order 2170d5ea218eSStefano Zampini 2171d5ea218eSStefano Zampini Notes: 2172d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2173d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2174d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2175d5ea218eSStefano Zampini 2176d5ea218eSStefano Zampini Level: developer 2177d5ea218eSStefano Zampini 2178d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2179d5ea218eSStefano Zampini @*/ 2180d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2181d5ea218eSStefano Zampini { 2182d5ea218eSStefano Zampini PetscErrorCode ierr; 2183d5ea218eSStefano Zampini 2184d5ea218eSStefano Zampini PetscFunctionBegin; 2185d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2186d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2187d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2188d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2189d5ea218eSStefano Zampini PetscFunctionReturn(0); 2190d5ea218eSStefano Zampini } 2191d5ea218eSStefano Zampini 2192d5ea218eSStefano Zampini /*@C 2193637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2194637a0070SStefano Zampini 2195637a0070SStefano Zampini Not Collective 2196637a0070SStefano Zampini 2197637a0070SStefano Zampini Input Parameters: 2198637a0070SStefano Zampini . A - the matrix 2199637a0070SStefano Zampini 2200637a0070SStefano Zampini Output Parameters 2201637a0070SStefano Zampini . array - the GPU array in column major order 2202637a0070SStefano Zampini 2203637a0070SStefano Zampini Notes: 2204637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2205637a0070SStefano Zampini 2206637a0070SStefano Zampini Level: developer 2207637a0070SStefano Zampini 2208637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2209637a0070SStefano Zampini @*/ 2210637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2211637a0070SStefano Zampini { 2212637a0070SStefano Zampini PetscErrorCode ierr; 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini PetscFunctionBegin; 2215d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2216637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2217637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2218637a0070SStefano Zampini PetscFunctionReturn(0); 2219637a0070SStefano Zampini } 2220637a0070SStefano Zampini 2221637a0070SStefano Zampini /*@C 2222637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2223637a0070SStefano Zampini 2224637a0070SStefano Zampini Not Collective 2225637a0070SStefano Zampini 2226637a0070SStefano Zampini Input Parameters: 2227637a0070SStefano Zampini + A - the matrix 2228637a0070SStefano Zampini - array - the GPU array in column major order 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini Notes: 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Level: developer 2233637a0070SStefano Zampini 2234637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2235637a0070SStefano Zampini @*/ 2236637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2237637a0070SStefano Zampini { 2238637a0070SStefano Zampini PetscErrorCode ierr; 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini PetscFunctionBegin; 2241d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2242637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2243637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2244637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2245637a0070SStefano Zampini PetscFunctionReturn(0); 2246637a0070SStefano Zampini } 2247637a0070SStefano Zampini 2248637a0070SStefano Zampini /*@C 2249637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2250637a0070SStefano Zampini 2251637a0070SStefano Zampini Not Collective 2252637a0070SStefano Zampini 2253637a0070SStefano Zampini Input Parameters: 2254637a0070SStefano Zampini . A - the matrix 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini Output Parameters 2257637a0070SStefano Zampini . array - the GPU array in column major order 2258637a0070SStefano Zampini 2259637a0070SStefano Zampini Notes: 2260637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini Level: developer 2263637a0070SStefano Zampini 2264637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2265637a0070SStefano Zampini @*/ 2266637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2267637a0070SStefano Zampini { 2268637a0070SStefano Zampini PetscErrorCode ierr; 2269637a0070SStefano Zampini 2270637a0070SStefano Zampini PetscFunctionBegin; 2271d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2272637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2273637a0070SStefano Zampini PetscFunctionReturn(0); 2274637a0070SStefano Zampini } 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini /*@C 2277637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Not Collective 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Input Parameters: 2282637a0070SStefano Zampini + A - the matrix 2283637a0070SStefano Zampini - array - the GPU array in column major order 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini Notes: 2286637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2287637a0070SStefano Zampini 2288637a0070SStefano Zampini Level: developer 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2291637a0070SStefano Zampini @*/ 2292637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2293637a0070SStefano Zampini { 2294637a0070SStefano Zampini PetscErrorCode ierr; 2295637a0070SStefano Zampini 2296637a0070SStefano Zampini PetscFunctionBegin; 2297637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2298637a0070SStefano Zampini PetscFunctionReturn(0); 2299637a0070SStefano Zampini } 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini /*@C 2302637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Not Collective 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini Input Parameters: 2307637a0070SStefano Zampini . A - the matrix 2308637a0070SStefano Zampini 2309637a0070SStefano Zampini Output Parameters 2310637a0070SStefano Zampini . array - the GPU array in column major order 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini Notes: 2313637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2314637a0070SStefano Zampini 2315637a0070SStefano Zampini Level: developer 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2318637a0070SStefano Zampini @*/ 2319637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2320637a0070SStefano Zampini { 2321637a0070SStefano Zampini PetscErrorCode ierr; 2322637a0070SStefano Zampini 2323637a0070SStefano Zampini PetscFunctionBegin; 2324d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2325637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2326637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2327637a0070SStefano Zampini PetscFunctionReturn(0); 2328637a0070SStefano Zampini } 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini /*@C 2331637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Not Collective 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Input Parameters: 2336637a0070SStefano Zampini + A - the matrix 2337637a0070SStefano Zampini - array - the GPU array in column major order 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Notes: 2340637a0070SStefano Zampini 2341637a0070SStefano Zampini Level: developer 2342637a0070SStefano Zampini 2343637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2344637a0070SStefano Zampini @*/ 2345637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2346637a0070SStefano Zampini { 2347637a0070SStefano Zampini PetscErrorCode ierr; 2348637a0070SStefano Zampini 2349637a0070SStefano Zampini PetscFunctionBegin; 2350d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2351637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2352637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2353637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2354637a0070SStefano Zampini PetscFunctionReturn(0); 2355637a0070SStefano Zampini } 2356637a0070SStefano Zampini #endif 2357637a0070SStefano Zampini 2358637a0070SStefano Zampini /*@C 2359637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23608965ea79SLois Curfman McInnes 2361d083f849SBarry Smith Collective 2362db81eaa0SLois Curfman McInnes 23638965ea79SLois Curfman McInnes Input Parameters: 2364db81eaa0SLois Curfman McInnes + comm - MPI communicator 23658965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2366db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23678965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2368db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23696cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2370dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23718965ea79SLois Curfman McInnes 23728965ea79SLois Curfman McInnes Output Parameter: 2373477f1c0bSLois Curfman McInnes . A - the matrix 23748965ea79SLois Curfman McInnes 2375b259b22eSLois Curfman McInnes Notes: 237639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 237739ddd567SLois Curfman McInnes storage by columns. 23788965ea79SLois Curfman McInnes 237918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 238018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23816cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 238218f449edSLois Curfman McInnes 23838965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23848965ea79SLois Curfman McInnes (possibly both). 23858965ea79SLois Curfman McInnes 2386027ccd11SLois Curfman McInnes Level: intermediate 2387027ccd11SLois Curfman McInnes 238839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 23898965ea79SLois Curfman McInnes @*/ 239069b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23918965ea79SLois Curfman McInnes { 23926849ba73SBarry Smith PetscErrorCode ierr; 239313f74950SBarry Smith PetscMPIInt size; 23948965ea79SLois Curfman McInnes 23953a40ed3dSBarry Smith PetscFunctionBegin; 2396f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2397f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2398273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2399273d9f13SBarry Smith if (size > 1) { 24008f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24018f490ea3SStefano Zampini 2402273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2403273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24048f490ea3SStefano Zampini ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr); 24058f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24066cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24076cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24086cfe35ddSJose E. Roman } 2409273d9f13SBarry Smith } else { 2410273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2411273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24128c469469SLois Curfman McInnes } 24133a40ed3dSBarry Smith PetscFunctionReturn(0); 24148965ea79SLois Curfman McInnes } 24158965ea79SLois Curfman McInnes 2416637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2417637a0070SStefano Zampini /*@C 2418637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2419637a0070SStefano Zampini 2420637a0070SStefano Zampini Collective 2421637a0070SStefano Zampini 2422637a0070SStefano Zampini Input Parameters: 2423637a0070SStefano Zampini + comm - MPI communicator 2424637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2425637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2426637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2427637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2428637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2429637a0070SStefano Zampini to control matrix memory allocation. 2430637a0070SStefano Zampini 2431637a0070SStefano Zampini Output Parameter: 2432637a0070SStefano Zampini . A - the matrix 2433637a0070SStefano Zampini 2434637a0070SStefano Zampini Notes: 2435637a0070SStefano Zampini 2436637a0070SStefano Zampini Level: intermediate 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2439637a0070SStefano Zampini @*/ 2440637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2441637a0070SStefano Zampini { 2442637a0070SStefano Zampini PetscErrorCode ierr; 2443637a0070SStefano Zampini PetscMPIInt size; 2444637a0070SStefano Zampini 2445637a0070SStefano Zampini PetscFunctionBegin; 2446637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2447637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2448637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2449637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2450637a0070SStefano Zampini if (size > 1) { 2451637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2452637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2453637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2454637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2455637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2456637a0070SStefano Zampini } 2457637a0070SStefano Zampini } else { 2458637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2459637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2460637a0070SStefano Zampini } 2461637a0070SStefano Zampini PetscFunctionReturn(0); 2462637a0070SStefano Zampini } 2463637a0070SStefano Zampini #endif 2464637a0070SStefano Zampini 24656849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24668965ea79SLois Curfman McInnes { 24678965ea79SLois Curfman McInnes Mat mat; 24683501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2469dfbe8321SBarry Smith PetscErrorCode ierr; 24708965ea79SLois Curfman McInnes 24713a40ed3dSBarry Smith PetscFunctionBegin; 24728965ea79SLois Curfman McInnes *newmat = 0; 2473ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2474d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 24757adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2476834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24775aa7edbeSHong Zhang 2478d5f3da31SBarry Smith mat->factortype = A->factortype; 2479c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2480273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24818965ea79SLois Curfman McInnes 2482e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24833782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2484e04c1aa4SHong Zhang 24851e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 24861e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 24878965ea79SLois Curfman McInnes 24885609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24893bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2490637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 249101b82886SBarry Smith 24928965ea79SLois Curfman McInnes *newmat = mat; 24933a40ed3dSBarry Smith PetscFunctionReturn(0); 24948965ea79SLois Curfman McInnes } 24958965ea79SLois Curfman McInnes 2496eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2497eb91f321SVaclav Hapla { 2498eb91f321SVaclav Hapla PetscErrorCode ierr; 249987d5ce66SSatish Balay PetscBool isbinary; 250087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 250187d5ce66SSatish Balay PetscBool ishdf5; 250287d5ce66SSatish Balay #endif 2503eb91f321SVaclav Hapla 2504eb91f321SVaclav Hapla PetscFunctionBegin; 2505eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2506eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2507eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2508eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2509eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 251087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2511eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 251287d5ce66SSatish Balay #endif 2513eb91f321SVaclav Hapla if (isbinary) { 25148491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2515eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 251687d5ce66SSatish Balay } else if (ishdf5) { 2517eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2518eb91f321SVaclav Hapla #endif 251987d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2520eb91f321SVaclav Hapla PetscFunctionReturn(0); 2521eb91f321SVaclav Hapla } 2522eb91f321SVaclav Hapla 25236718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25246e4ee0c6SHong Zhang { 25256e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25266e4ee0c6SHong Zhang Mat a,b; 2527ace3abfcSBarry Smith PetscBool flg; 25286e4ee0c6SHong Zhang PetscErrorCode ierr; 252990ace30eSBarry Smith 25306e4ee0c6SHong Zhang PetscFunctionBegin; 25316e4ee0c6SHong Zhang a = matA->A; 25326e4ee0c6SHong Zhang b = matB->A; 25336e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2534b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 25356e4ee0c6SHong Zhang PetscFunctionReturn(0); 25366e4ee0c6SHong Zhang } 253790ace30eSBarry Smith 25386718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2539baa3c1c6SHong Zhang { 2540baa3c1c6SHong Zhang PetscErrorCode ierr; 25416718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2542baa3c1c6SHong Zhang 2543baa3c1c6SHong Zhang PetscFunctionBegin; 2544637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2545637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2546baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2547baa3c1c6SHong Zhang PetscFunctionReturn(0); 2548baa3c1c6SHong Zhang } 2549baa3c1c6SHong Zhang 25506718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2551cc48ffa7SToby Isaac { 2552cc48ffa7SToby Isaac PetscErrorCode ierr; 25536718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2554cc48ffa7SToby Isaac 2555cc48ffa7SToby Isaac PetscFunctionBegin; 2556cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2557faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2558cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2559cc48ffa7SToby Isaac PetscFunctionReturn(0); 2560cc48ffa7SToby Isaac } 2561cc48ffa7SToby Isaac 25626718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2563cb20be35SHong Zhang { 2564baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25656718818eSStefano Zampini Mat_TransMatMultDense *atb; 2566cb20be35SHong Zhang PetscErrorCode ierr; 2567cb20be35SHong Zhang MPI_Comm comm; 25686718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25696718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2570637a0070SStefano Zampini const PetscScalar *atbarray; 2571d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2572e68c0b26SHong Zhang const PetscInt *ranges; 2573cb20be35SHong Zhang 2574cb20be35SHong Zhang PetscFunctionBegin; 25756718818eSStefano Zampini MatCheckProduct(C,3); 25766718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25776718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25786718818eSStefano Zampini recvcounts = atb->recvcounts; 25796718818eSStefano Zampini sendbuf = atb->sendbuf; 25806718818eSStefano Zampini 2581cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2582cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2583e68c0b26SHong Zhang 2584c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2585637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2586cb20be35SHong Zhang 2587cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2588cb20be35SHong Zhang 2589660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2590637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2591637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2592baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2593c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2594cb20be35SHong Zhang } 2595cb20be35SHong Zhang } 2596637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2597637a0070SStefano Zampini 2598c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25990acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 26003462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 26010acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26020acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26030acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2604cb20be35SHong Zhang PetscFunctionReturn(0); 2605cb20be35SHong Zhang } 2606cb20be35SHong Zhang 26076718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2608cb20be35SHong Zhang { 2609cb20be35SHong Zhang PetscErrorCode ierr; 2610cb20be35SHong Zhang MPI_Comm comm; 2611baa3c1c6SHong Zhang PetscMPIInt size; 2612660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2613baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26146718818eSStefano Zampini PetscBool cisdense; 26150acaeb71SStefano Zampini PetscInt i; 26160acaeb71SStefano Zampini const PetscInt *ranges; 2617cb20be35SHong Zhang 2618cb20be35SHong Zhang PetscFunctionBegin; 26196718818eSStefano Zampini MatCheckProduct(C,3); 26206718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2621baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2622cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2623cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2624cb20be35SHong Zhang } 2625cb20be35SHong Zhang 26264222ddf1SHong Zhang /* create matrix product C */ 26276718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 26286718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 26296718818eSStefano Zampini if (!cisdense) { 26306718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 26316718818eSStefano Zampini } 263218992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2633baa3c1c6SHong Zhang 26344222ddf1SHong Zhang /* create data structure for reuse C */ 2635baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2636baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 26374222ddf1SHong Zhang cM = C->rmap->N; 26386718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 26390acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 26400acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2641baa3c1c6SHong Zhang 26426718818eSStefano Zampini C->product->data = atb; 26436718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2644cb20be35SHong Zhang PetscFunctionReturn(0); 2645cb20be35SHong Zhang } 2646cb20be35SHong Zhang 26474222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2648cb20be35SHong Zhang { 2649cb20be35SHong Zhang PetscErrorCode ierr; 2650cc48ffa7SToby Isaac MPI_Comm comm; 2651cc48ffa7SToby Isaac PetscMPIInt i, size; 2652cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2653cc48ffa7SToby Isaac PetscMPIInt tag; 26544222ddf1SHong Zhang PetscInt alg; 2655cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26564222ddf1SHong Zhang Mat_Product *product = C->product; 26574222ddf1SHong Zhang PetscBool flg; 2658cc48ffa7SToby Isaac 2659cc48ffa7SToby Isaac PetscFunctionBegin; 26606718818eSStefano Zampini MatCheckProduct(C,4); 26616718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26624222ddf1SHong Zhang /* check local size of A and B */ 2663637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2664cc48ffa7SToby Isaac 26654222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2666637a0070SStefano Zampini alg = flg ? 0 : 1; 2667cc48ffa7SToby Isaac 26684222ddf1SHong Zhang /* setup matrix product C */ 26694222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 26704222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 267118992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26724222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 26734222ddf1SHong Zhang 26744222ddf1SHong Zhang /* create data structure for reuse C */ 26754222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2676cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2677cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2678cc48ffa7SToby Isaac abt->tag = tag; 2679faa55883SToby Isaac abt->alg = alg; 2680faa55883SToby Isaac switch (alg) { 26814222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2682cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2683cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2684cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2685faa55883SToby Isaac break; 26864222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2687faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2688faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2689faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2690faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2691faa55883SToby Isaac break; 2692faa55883SToby Isaac } 2693cc48ffa7SToby Isaac 26946718818eSStefano Zampini C->product->data = abt; 26956718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26964222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2697cc48ffa7SToby Isaac PetscFunctionReturn(0); 2698cc48ffa7SToby Isaac } 2699cc48ffa7SToby Isaac 2700faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2701cc48ffa7SToby Isaac { 2702cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27036718818eSStefano Zampini Mat_MatTransMultDense *abt; 2704cc48ffa7SToby Isaac PetscErrorCode ierr; 2705cc48ffa7SToby Isaac MPI_Comm comm; 2706cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2707637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2708cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2709cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2710637a0070SStefano Zampini const PetscScalar *av,*bv; 2711637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2712cc48ffa7SToby Isaac MPI_Request reqs[2]; 2713cc48ffa7SToby Isaac const PetscInt *ranges; 2714cc48ffa7SToby Isaac 2715cc48ffa7SToby Isaac PetscFunctionBegin; 27166718818eSStefano Zampini MatCheckProduct(C,3); 27176718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27186718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27196718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2720cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2721cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2722637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2723637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 27240acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2725637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2726637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2727637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2728637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2729637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2730637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2731cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2732cc48ffa7SToby Isaac bn = B->rmap->n; 2733637a0070SStefano Zampini if (blda == bn) { 2734637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2735cc48ffa7SToby Isaac } else { 2736cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2737cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2738cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2739637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2740cc48ffa7SToby Isaac } 2741cc48ffa7SToby Isaac } 2742cc48ffa7SToby Isaac } 2743cc48ffa7SToby Isaac if (size > 1) { 2744cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2745cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2746cc48ffa7SToby Isaac } else { 2747cc48ffa7SToby Isaac sendto = recvfrom = 0; 2748cc48ffa7SToby Isaac } 2749cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2750cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2751cc48ffa7SToby Isaac recvisfrom = rank; 2752cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2753cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2754cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2755cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2756cc48ffa7SToby Isaac 2757cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2758cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2759cc48ffa7SToby Isaac sendsiz = cK * bn; 2760cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2761cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2762cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2763cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2764cc48ffa7SToby Isaac } 2765cc48ffa7SToby Isaac 2766cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2767cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 276850ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2769cc48ffa7SToby Isaac 2770cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2771cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2772cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2773cc48ffa7SToby Isaac } 2774cc48ffa7SToby Isaac bn = nextbn; 2775cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2776cc48ffa7SToby Isaac sendbuf = recvbuf; 2777cc48ffa7SToby Isaac } 2778637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2779637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 27800acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 27810acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27820acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2783cc48ffa7SToby Isaac PetscFunctionReturn(0); 2784cc48ffa7SToby Isaac } 2785cc48ffa7SToby Isaac 2786faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2787faa55883SToby Isaac { 2788faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27896718818eSStefano Zampini Mat_MatTransMultDense *abt; 2790faa55883SToby Isaac PetscErrorCode ierr; 2791faa55883SToby Isaac MPI_Comm comm; 2792637a0070SStefano Zampini PetscMPIInt size; 2793637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2794637a0070SStefano Zampini const PetscScalar *av,*bv; 2795637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2796faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2797637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2798faa55883SToby Isaac 2799faa55883SToby Isaac PetscFunctionBegin; 28006718818eSStefano Zampini MatCheckProduct(C,3); 28016718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28026718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2803faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2804faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2805637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2806637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28070acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2808637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2809637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2810637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2811637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2812637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2813faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2814faa55883SToby Isaac bn = B->rmap->n; 2815faa55883SToby Isaac sendbuf = abt->buf[0]; 2816faa55883SToby Isaac recvbuf = abt->buf[1]; 2817faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2818faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2819637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2820faa55883SToby Isaac } 2821faa55883SToby Isaac } 2822637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2823faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2824faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2825faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2826faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 282750ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2828637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2829637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28300acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28310acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28320acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2833faa55883SToby Isaac PetscFunctionReturn(0); 2834faa55883SToby Isaac } 2835faa55883SToby Isaac 2836faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2837faa55883SToby Isaac { 28386718818eSStefano Zampini Mat_MatTransMultDense *abt; 2839faa55883SToby Isaac PetscErrorCode ierr; 2840faa55883SToby Isaac 2841faa55883SToby Isaac PetscFunctionBegin; 28426718818eSStefano Zampini MatCheckProduct(C,3); 28436718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28446718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2845faa55883SToby Isaac switch (abt->alg) { 2846faa55883SToby Isaac case 1: 2847faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2848faa55883SToby Isaac break; 2849faa55883SToby Isaac default: 2850faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2851faa55883SToby Isaac break; 2852faa55883SToby Isaac } 2853faa55883SToby Isaac PetscFunctionReturn(0); 2854faa55883SToby Isaac } 2855faa55883SToby Isaac 28566718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2857320f2790SHong Zhang { 2858320f2790SHong Zhang PetscErrorCode ierr; 28596718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2860320f2790SHong Zhang 2861320f2790SHong Zhang PetscFunctionBegin; 2862320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2863320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2864320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2865320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2866320f2790SHong Zhang PetscFunctionReturn(0); 2867320f2790SHong Zhang } 2868320f2790SHong Zhang 28695242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2870320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2871320f2790SHong Zhang { 2872320f2790SHong Zhang PetscErrorCode ierr; 28736718818eSStefano Zampini Mat_MatMultDense *ab; 2874320f2790SHong Zhang 2875320f2790SHong Zhang PetscFunctionBegin; 28766718818eSStefano Zampini MatCheckProduct(C,3); 28776718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28786718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2879de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2880de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 28814222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2882de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2883320f2790SHong Zhang PetscFunctionReturn(0); 2884320f2790SHong Zhang } 2885320f2790SHong Zhang 28866718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2887320f2790SHong Zhang { 2888320f2790SHong Zhang PetscErrorCode ierr; 2889320f2790SHong Zhang Mat Ae,Be,Ce; 2890320f2790SHong Zhang Mat_MatMultDense *ab; 2891320f2790SHong Zhang 2892320f2790SHong Zhang PetscFunctionBegin; 28936718818eSStefano Zampini MatCheckProduct(C,4); 28946718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28954222ddf1SHong Zhang /* check local size of A and B */ 2896320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2897378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2898320f2790SHong Zhang } 2899320f2790SHong Zhang 29004222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29014222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29024222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29034222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29044222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29054222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2906320f2790SHong Zhang 29074222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29084222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29094222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29104222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29114222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2912320f2790SHong Zhang 29134222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29144222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29154222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29164222ddf1SHong Zhang 29174222ddf1SHong Zhang /* setup C */ 29184222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29194222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29204222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2921320f2790SHong Zhang 2922320f2790SHong Zhang /* create data structure for reuse Cdense */ 2923320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2924320f2790SHong Zhang ab->Ae = Ae; 2925320f2790SHong Zhang ab->Be = Be; 2926320f2790SHong Zhang ab->Ce = Ce; 29276718818eSStefano Zampini 29286718818eSStefano Zampini C->product->data = ab; 29296718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29304222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2931320f2790SHong Zhang PetscFunctionReturn(0); 2932320f2790SHong Zhang } 29334222ddf1SHong Zhang #endif 29344222ddf1SHong Zhang /* ----------------------------------------------- */ 29354222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29364222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2937320f2790SHong Zhang { 2938320f2790SHong Zhang PetscFunctionBegin; 29394222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29404222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2941320f2790SHong Zhang PetscFunctionReturn(0); 2942320f2790SHong Zhang } 29435242a7b1SHong Zhang #endif 294486aefd0dSHong Zhang 29454222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29464222ddf1SHong Zhang { 29474222ddf1SHong Zhang Mat_Product *product = C->product; 29484222ddf1SHong Zhang Mat A = product->A,B=product->B; 29494222ddf1SHong Zhang 29504222ddf1SHong Zhang PetscFunctionBegin; 29514222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 29524222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29536718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29546718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29554222ddf1SHong Zhang PetscFunctionReturn(0); 29564222ddf1SHong Zhang } 29574222ddf1SHong Zhang 29584222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29594222ddf1SHong Zhang { 29604222ddf1SHong Zhang PetscErrorCode ierr; 29614222ddf1SHong Zhang Mat_Product *product = C->product; 29624222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29634222ddf1SHong Zhang PetscInt alg,nalg = 2; 29644222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29654222ddf1SHong Zhang 29664222ddf1SHong Zhang PetscFunctionBegin; 29674222ddf1SHong Zhang /* Set default algorithm */ 29684222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29694222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 29704222ddf1SHong Zhang if (flg) { 29714222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29724222ddf1SHong Zhang } 29734222ddf1SHong Zhang 29744222ddf1SHong Zhang /* Get runtime option */ 29754222ddf1SHong Zhang if (product->api_user) { 29764222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29774222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29784222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29794222ddf1SHong Zhang } else { 29804222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29814222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29824222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29834222ddf1SHong Zhang } 29844222ddf1SHong Zhang if (flg) { 29854222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29864222ddf1SHong Zhang } 29874222ddf1SHong Zhang 29884222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29894222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29904222ddf1SHong Zhang PetscFunctionReturn(0); 29914222ddf1SHong Zhang } 29924222ddf1SHong Zhang 29934222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29944222ddf1SHong Zhang { 29954222ddf1SHong Zhang PetscErrorCode ierr; 29964222ddf1SHong Zhang Mat_Product *product = C->product; 29974222ddf1SHong Zhang 29984222ddf1SHong Zhang PetscFunctionBegin; 29994222ddf1SHong Zhang switch (product->type) { 30004222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30014222ddf1SHong Zhang case MATPRODUCT_AB: 30024222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30034222ddf1SHong Zhang break; 30044222ddf1SHong Zhang #endif 30054222ddf1SHong Zhang case MATPRODUCT_AtB: 30064222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30074222ddf1SHong Zhang break; 30084222ddf1SHong Zhang case MATPRODUCT_ABt: 30094222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30104222ddf1SHong Zhang break; 30116718818eSStefano Zampini default: 30126718818eSStefano Zampini break; 30134222ddf1SHong Zhang } 30144222ddf1SHong Zhang PetscFunctionReturn(0); 30154222ddf1SHong Zhang } 3016