1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35f140bc17SStefano Zampini else { 36f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38f140bc17SStefano Zampini *B = A; 39f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 44a76f77c3SStefano Zampini { 45a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 46a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 47a76f77c3SStefano Zampini PetscErrorCode ierr; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 50a76f77c3SStefano Zampini ierr = MatCopy(Amat->A,Bmat->A,s);CHKERRQ(ierr); 51a76f77c3SStefano Zampini PetscFunctionReturn(0); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 55ba8c8a56SBarry Smith { 56ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 57ba8c8a56SBarry Smith PetscErrorCode ierr; 58d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 62ba8c8a56SBarry Smith lrow = row - rstart; 63ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 67637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 68ba8c8a56SBarry Smith { 69637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 70ba8c8a56SBarry Smith PetscErrorCode ierr; 71637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 72ba8c8a56SBarry Smith 73ba8c8a56SBarry Smith PetscFunctionBegin; 74637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 75637a0070SStefano Zampini lrow = row - rstart; 76637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 77ba8c8a56SBarry Smith PetscFunctionReturn(0); 78ba8c8a56SBarry Smith } 79ba8c8a56SBarry Smith 8011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 810de54da6SSatish Balay { 820de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8587828ca2SBarry Smith PetscScalar *array; 860de54da6SSatish Balay MPI_Comm comm; 874b6ae80fSStefano Zampini PetscBool flg; 8811bd1e4dSLisandro Dalcin Mat B; 890de54da6SSatish Balay 900de54da6SSatish Balay PetscFunctionBegin; 914b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 924b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 9311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 94616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 954b6ae80fSStefano Zampini 964b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 974b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 980de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 9911bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 10011bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 10111bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 1024b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10311bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 1044b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10511bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10611bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10711bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 10811bd1e4dSLisandro Dalcin *a = B; 10911bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 1102205254eSKarl Rupp } else *a = B; 1110de54da6SSatish Balay PetscFunctionReturn(0); 1120de54da6SSatish Balay } 1130de54da6SSatish Balay 11413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1158965ea79SLois Curfman McInnes { 11639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 117dfbe8321SBarry Smith PetscErrorCode ierr; 118d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 119ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1208965ea79SLois Curfman McInnes 1213a40ed3dSBarry Smith PetscFunctionBegin; 1228965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1235ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 124e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1258965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1268965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12739b7565bSBarry Smith if (roworiented) { 12839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1293a40ed3dSBarry Smith } else { 1308965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1315ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 132e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 13339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 13439b7565bSBarry Smith } 1358965ea79SLois Curfman McInnes } 1362205254eSKarl Rupp } else if (!A->donotstash) { 1375080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13839b7565bSBarry Smith if (roworiented) { 139b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 140d36fbae8SSatish Balay } else { 141b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 14239b7565bSBarry Smith } 143b49de8d1SLois Curfman McInnes } 144b49de8d1SLois Curfman McInnes } 1453a40ed3dSBarry Smith PetscFunctionReturn(0); 146b49de8d1SLois Curfman McInnes } 147b49de8d1SLois Curfman McInnes 14813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 149b49de8d1SLois Curfman McInnes { 150b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 151dfbe8321SBarry Smith PetscErrorCode ierr; 152d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 153b49de8d1SLois Curfman McInnes 1543a40ed3dSBarry Smith PetscFunctionBegin; 155b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 156e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 157e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 158b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 159b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 160b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 161e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 162e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 163b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 164b49de8d1SLois Curfman McInnes } 165e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 17049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 17149a6ff4bSBarry Smith { 17249a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17349a6ff4bSBarry Smith PetscErrorCode ierr; 17449a6ff4bSBarry Smith 17549a6ff4bSBarry Smith PetscFunctionBegin; 17649a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 17749a6ff4bSBarry Smith PetscFunctionReturn(0); 17849a6ff4bSBarry Smith } 17949a6ff4bSBarry Smith 180ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 181ad16ce7aSStefano Zampini { 182ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18317359960SJose E. Roman PetscBool iscuda; 184ad16ce7aSStefano Zampini PetscErrorCode ierr; 185ad16ce7aSStefano Zampini 186ad16ce7aSStefano Zampini PetscFunctionBegin; 18717359960SJose E. Roman if (!a->A) { 18817359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18917359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 19017359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 19117359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 19217359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 19317359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 19417359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 19517359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 19617359960SJose E. Roman } 197ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 198ad16ce7aSStefano Zampini PetscFunctionReturn(0); 199ad16ce7aSStefano Zampini } 200ad16ce7aSStefano Zampini 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 202ff14e315SSatish Balay { 203ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 204dfbe8321SBarry Smith PetscErrorCode ierr; 205ff14e315SSatish Balay 2063a40ed3dSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 2093a40ed3dSBarry Smith PetscFunctionReturn(0); 210ff14e315SSatish Balay } 211ff14e315SSatish Balay 212637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2138572280aSBarry Smith { 2148572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2158572280aSBarry Smith PetscErrorCode ierr; 2168572280aSBarry Smith 2178572280aSBarry Smith PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2198572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2208572280aSBarry Smith PetscFunctionReturn(0); 2218572280aSBarry Smith } 2228572280aSBarry Smith 2236947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2246947451fSStefano Zampini { 2256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2266947451fSStefano Zampini PetscErrorCode ierr; 2276947451fSStefano Zampini 2286947451fSStefano Zampini PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2306947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2316947451fSStefano Zampini PetscFunctionReturn(0); 2326947451fSStefano Zampini } 2336947451fSStefano Zampini 234637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 235d3042a70SBarry Smith { 236d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 237d3042a70SBarry Smith PetscErrorCode ierr; 238d3042a70SBarry Smith 239d3042a70SBarry Smith PetscFunctionBegin; 240616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 241616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 242d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 243d3042a70SBarry Smith PetscFunctionReturn(0); 244d3042a70SBarry Smith } 245d3042a70SBarry Smith 246d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 247d3042a70SBarry Smith { 248d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 249d3042a70SBarry Smith PetscErrorCode ierr; 250d3042a70SBarry Smith 251d3042a70SBarry Smith PetscFunctionBegin; 252616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 253616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 254d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 255d3042a70SBarry Smith PetscFunctionReturn(0); 256d3042a70SBarry Smith } 257d3042a70SBarry Smith 258d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 259d5ea218eSStefano Zampini { 260d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 261d5ea218eSStefano Zampini PetscErrorCode ierr; 262d5ea218eSStefano Zampini 263d5ea218eSStefano Zampini PetscFunctionBegin; 264616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 265616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 266d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 267d5ea218eSStefano Zampini PetscFunctionReturn(0); 268d5ea218eSStefano Zampini } 269d5ea218eSStefano Zampini 2707dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 271ca3fa75bSLois Curfman McInnes { 272ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2736849ba73SBarry Smith PetscErrorCode ierr; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 28342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 28442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 28542a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2874aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 288ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2894aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 290b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 291b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2924aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2997eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 308ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 3094aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 3107adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3110298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 316637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 317637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 318637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 325637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 326637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 329ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 330ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 333ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3345bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 33532bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith PetscErrorCode ierr; 34473a71a0fSBarry Smith 3453a40ed3dSBarry Smith PetscFunctionBegin; 3468c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3473a40ed3dSBarry Smith PetscFunctionReturn(0); 348ff14e315SSatish Balay } 349ff14e315SSatish Balay 350637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3518572280aSBarry Smith { 3528572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3538572280aSBarry Smith PetscErrorCode ierr; 3548572280aSBarry Smith 3558572280aSBarry Smith PetscFunctionBegin; 3568572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3578572280aSBarry Smith PetscFunctionReturn(0); 3588572280aSBarry Smith } 3598572280aSBarry Smith 3606947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3616947451fSStefano Zampini { 3626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3636947451fSStefano Zampini PetscErrorCode ierr; 3646947451fSStefano Zampini 3656947451fSStefano Zampini PetscFunctionBegin; 3666947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3676947451fSStefano Zampini PetscFunctionReturn(0); 3686947451fSStefano Zampini } 3696947451fSStefano Zampini 370dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3718965ea79SLois Curfman McInnes { 37239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 373dfbe8321SBarry Smith PetscErrorCode ierr; 37413f74950SBarry Smith PetscInt nstash,reallocs; 3758965ea79SLois Curfman McInnes 3763a40ed3dSBarry Smith PetscFunctionBegin; 3774067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3788965ea79SLois Curfman McInnes 379d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3808798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 381ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3823a40ed3dSBarry Smith PetscFunctionReturn(0); 3838965ea79SLois Curfman McInnes } 3848965ea79SLois Curfman McInnes 385dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3868965ea79SLois Curfman McInnes { 38739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3886849ba73SBarry Smith PetscErrorCode ierr; 38913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 39013f74950SBarry Smith PetscMPIInt n; 39187828ca2SBarry Smith PetscScalar *val; 3928965ea79SLois Curfman McInnes 3933a40ed3dSBarry Smith PetscFunctionBegin; 394910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3958965ea79SLois Curfman McInnes /* wait on receives */ 3967ef1d9bdSSatish Balay while (1) { 3978798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay if (!flg) break; 3998965ea79SLois Curfman McInnes 4007ef1d9bdSSatish Balay for (i=0; i<n;) { 4017ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4022205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 4032205254eSKarl Rupp if (row[j] != rstart) break; 4042205254eSKarl Rupp } 4057ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4067ef1d9bdSSatish Balay else ncols = n-i; 4077ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4084b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 4097ef1d9bdSSatish Balay i = j; 4108965ea79SLois Curfman McInnes } 4117ef1d9bdSSatish Balay } 4128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 413910cf402Sprj- } 4148965ea79SLois Curfman McInnes 41539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 41639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes 4186d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 41939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes } 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4258965ea79SLois Curfman McInnes { 426dfbe8321SBarry Smith PetscErrorCode ierr; 42739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4283a40ed3dSBarry Smith 4293a40ed3dSBarry Smith PetscFunctionBegin; 4303a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4313a40ed3dSBarry Smith PetscFunctionReturn(0); 4328965ea79SLois Curfman McInnes } 4338965ea79SLois Curfman McInnes 434637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4358965ea79SLois Curfman McInnes { 43639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4376849ba73SBarry Smith PetscErrorCode ierr; 438637a0070SStefano Zampini PetscInt i,len,*lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 442637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 44897b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 450637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 45197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith } 454637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 458637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 459637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 460637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 461637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 462b9679d65SBarry Smith } 463606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4643a40ed3dSBarry Smith PetscFunctionReturn(0); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 471cc2e6a90SBarry Smith 472dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4738965ea79SLois Curfman McInnes { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 475dfbe8321SBarry Smith PetscErrorCode ierr; 476637a0070SStefano Zampini const PetscScalar *ax; 477637a0070SStefano Zampini PetscScalar *ay; 478d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 479c456f294SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 481a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 482a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 483ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 484ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 485a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 486a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4928965ea79SLois Curfman McInnes { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 494dfbe8321SBarry Smith PetscErrorCode ierr; 495637a0070SStefano Zampini const PetscScalar *ax; 496637a0070SStefano Zampini PetscScalar *ay; 497d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 498c456f294SBarry Smith 4993a40ed3dSBarry Smith PetscFunctionBegin; 500a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 501a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 502ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 503ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 504a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 505a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514637a0070SStefano Zampini const PetscScalar *ax; 515637a0070SStefano Zampini PetscScalar *ay; 516d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 517096963f5SLois Curfman McInnes 5183a40ed3dSBarry Smith PetscFunctionBegin; 519637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 520637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 521a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 522a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(yy,&ay,&aymtype);CHKERRQ(ierr); 523d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 524637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 525a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 526a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(yy,&ay);CHKERRQ(ierr); 5273a40ed3dSBarry Smith PetscFunctionReturn(0); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 531096963f5SLois Curfman McInnes { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533dfbe8321SBarry Smith PetscErrorCode ierr; 534637a0070SStefano Zampini const PetscScalar *ax; 535637a0070SStefano Zampini PetscScalar *ay; 536d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 537096963f5SLois Curfman McInnes 5383a40ed3dSBarry Smith PetscFunctionBegin; 5393501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 540637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 541a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 542a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(zz,&ay,&aymtype);CHKERRQ(ierr); 543d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 544637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 545a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 546a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(zz,&ay);CHKERRQ(ierr); 5473a40ed3dSBarry Smith PetscFunctionReturn(0); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5518965ea79SLois Curfman McInnes { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556637a0070SStefano Zampini const PetscScalar *av; 557ed3cc1f0SBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 5592dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 561096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 562e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 563d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 564d0f46423SBarry Smith radd = A->rmap->rstart*m; 565637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 566637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 56744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 568637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 569096963f5SLois Curfman McInnes } 570637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5711ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5723a40ed3dSBarry Smith PetscFunctionReturn(0); 5738965ea79SLois Curfman McInnes } 5748965ea79SLois Curfman McInnes 575dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5768965ea79SLois Curfman McInnes { 5773501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 578dfbe8321SBarry Smith PetscErrorCode ierr; 579ed3cc1f0SBarry Smith 5803a40ed3dSBarry Smith PetscFunctionBegin; 581aa482453SBarry Smith #if defined(PETSC_USE_LOG) 582d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5838965ea79SLois Curfman McInnes #endif 5848798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 585616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 586616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5876bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5886bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 589637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5906947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5915ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 59201b82886SBarry Smith 593bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 594f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang 59649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 597ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5988baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 6008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 6018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 6026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 6036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 604d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 605d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 606d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 6074e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6084e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6098baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6108baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 6118baccfbdSHong Zhang #endif 612d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 613d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 614d24d4204SJose E. Roman #endif 615bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 6164222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6174222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6186718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6196718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6206718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6216718818eSStefano Zampini #endif 62286aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 62386aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6246947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6256947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6266947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6276947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6286947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6296947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6305ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6315ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6323a40ed3dSBarry Smith PetscFunctionReturn(0); 6338965ea79SLois Curfman McInnes } 63439ddd567SLois Curfman McInnes 63552c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 63652c5f739Sprj- 6379804daf3SBarry Smith #include <petscdraw.h> 6386849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6398965ea79SLois Curfman McInnes { 64039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 641dfbe8321SBarry Smith PetscErrorCode ierr; 642616b8fbbSStefano Zampini PetscMPIInt rank; 64319fd82e9SBarry Smith PetscViewerType vtype; 644ace3abfcSBarry Smith PetscBool iascii,isdraw; 645b0a32e0cSBarry Smith PetscViewer sviewer; 646f3ef73ceSBarry Smith PetscViewerFormat format; 6478965ea79SLois Curfman McInnes 6483a40ed3dSBarry Smith PetscFunctionBegin; 649ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 650251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 651251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 65232077d6dSBarry Smith if (iascii) { 653b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 655456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6564e220ebcSLois Curfman McInnes MatInfo info; 657888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6581575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6597b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 660b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6611575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 662637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 664fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6653a40ed3dSBarry Smith PetscFunctionReturn(0); 6668965ea79SLois Curfman McInnes } 667f1af5d2fSBarry Smith } else if (isdraw) { 668b0a32e0cSBarry Smith PetscDraw draw; 669ace3abfcSBarry Smith PetscBool isnull; 670f1af5d2fSBarry Smith 671b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 672b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 673f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 674f1af5d2fSBarry Smith } 67577ed5343SBarry Smith 6767da1fb6eSBarry Smith { 6778965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6788965ea79SLois Curfman McInnes Mat A; 679d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 680ba8c8a56SBarry Smith PetscInt *cols; 681ba8c8a56SBarry Smith PetscScalar *vals; 6828965ea79SLois Curfman McInnes 683ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6848965ea79SLois Curfman McInnes if (!rank) { 685f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6863a40ed3dSBarry Smith } else { 687f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6888965ea79SLois Curfman McInnes } 6897adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 690878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6910298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6923bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6938965ea79SLois Curfman McInnes 69439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69539ddd567SLois Curfman McInnes but it's quick for now */ 69651022da4SBarry Smith A->insertmode = INSERT_VALUES; 6972205254eSKarl Rupp 6982205254eSKarl Rupp row = mat->rmap->rstart; 6992205254eSKarl Rupp m = mdn->A->rmap->n; 7008965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 701ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 702ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 703ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 70439ddd567SLois Curfman McInnes row++; 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 7076d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7086d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7093f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 710b9b97703SBarry Smith if (!rank) { 7111a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7127da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7138965ea79SLois Curfman McInnes } 7143f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7166bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7178965ea79SLois Curfman McInnes } 7183a40ed3dSBarry Smith PetscFunctionReturn(0); 7198965ea79SLois Curfman McInnes } 7208965ea79SLois Curfman McInnes 721dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7228965ea79SLois Curfman McInnes { 723dfbe8321SBarry Smith PetscErrorCode ierr; 724ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7258965ea79SLois Curfman McInnes 726433994e6SBarry Smith PetscFunctionBegin; 727251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 728251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 729251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 730251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7310f5bd95cSBarry Smith 73232077d6dSBarry Smith if (iascii || issocket || isdraw) { 733f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7340f5bd95cSBarry Smith } else if (isbinary) { 7358491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 73611aeaf0aSBarry Smith } 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 744dfbe8321SBarry Smith PetscErrorCode ierr; 7453966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7468965ea79SLois Curfman McInnes 7473a40ed3dSBarry Smith PetscFunctionBegin; 7484e220ebcSLois Curfman McInnes info->block_size = 1.0; 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7512205254eSKarl Rupp 7524e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7534e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7548965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7554e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7564e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7574e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7584e220ebcSLois Curfman McInnes info->memory = isend[3]; 7594e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7608965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7613966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7622205254eSKarl Rupp 7634e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7644e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7654e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7664e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7674e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7688965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7693966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7702205254eSKarl Rupp 7714e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7724e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7734e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7744e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7754e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7768965ea79SLois Curfman McInnes } 7774e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7784e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7794e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7803a40ed3dSBarry Smith PetscFunctionReturn(0); 7818965ea79SLois Curfman McInnes } 7828965ea79SLois Curfman McInnes 783ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7848965ea79SLois Curfman McInnes { 78539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 786dfbe8321SBarry Smith PetscErrorCode ierr; 7878965ea79SLois Curfman McInnes 7883a40ed3dSBarry Smith PetscFunctionBegin; 78912c028f9SKris Buschelman switch (op) { 790512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 79112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79343674050SBarry Smith MatCheckPreallocated(A,1); 7944e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 79512c028f9SKris Buschelman break; 79612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79743674050SBarry Smith MatCheckPreallocated(A,1); 7984e0d8c25SBarry Smith a->roworiented = flg; 7994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 80012c028f9SKris Buschelman break; 8018c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 804071fcb05SBarry Smith case MAT_SORTED_FULL: 805290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80612c028f9SKris Buschelman break; 80712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8084e0d8c25SBarry Smith a->donotstash = flg; 80912c028f9SKris Buschelman break; 81077e54ba9SKris Buschelman case MAT_SYMMETRIC: 81177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8129a4540c5SBarry Smith case MAT_HERMITIAN: 8139a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 814600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8155d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 816290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 81777e54ba9SKris Buschelman break; 81812c028f9SKris Buschelman default: 819e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8203a40ed3dSBarry Smith } 8213a40ed3dSBarry Smith PetscFunctionReturn(0); 8228965ea79SLois Curfman McInnes } 8238965ea79SLois Curfman McInnes 824dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8255b2fa520SLois Curfman McInnes { 8265b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 827637a0070SStefano Zampini const PetscScalar *l; 828637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 829dfbe8321SBarry Smith PetscErrorCode ierr; 830637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8315b2fa520SLois Curfman McInnes 8325b2fa520SLois Curfman McInnes PetscFunctionBegin; 833637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 834637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 83572d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8365b2fa520SLois Curfman McInnes if (ll) { 83772d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 838637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 839bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8405b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8415b2fa520SLois Curfman McInnes x = l[i]; 842637a0070SStefano Zampini v = vv + i; 843637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8445b2fa520SLois Curfman McInnes } 845bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 846637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8475b2fa520SLois Curfman McInnes } 8485b2fa520SLois Curfman McInnes if (rr) { 849637a0070SStefano Zampini const PetscScalar *ar; 850637a0070SStefano Zampini 851175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 852e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 853637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 854637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 855ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 856ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 857637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8595b2fa520SLois Curfman McInnes x = r[i]; 860637a0070SStefano Zampini v = vv + i*lda; 8612205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8625b2fa520SLois Curfman McInnes } 863637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 864637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes } 866637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8685b2fa520SLois Curfman McInnes } 8695b2fa520SLois Curfman McInnes 870dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 871096963f5SLois Curfman McInnes { 8723501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 873dfbe8321SBarry Smith PetscErrorCode ierr; 87413f74950SBarry Smith PetscInt i,j; 875616b8fbbSStefano Zampini PetscMPIInt size; 876329f5518SBarry Smith PetscReal sum = 0.0; 877637a0070SStefano Zampini const PetscScalar *av,*v; 8783501a2bdSLois Curfman McInnes 8793a40ed3dSBarry Smith PetscFunctionBegin; 880637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 881637a0070SStefano Zampini v = av; 882ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 883616b8fbbSStefano Zampini if (size == 1) { 884064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8853501a2bdSLois Curfman McInnes } else { 8863501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 887d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 888329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8893501a2bdSLois Curfman McInnes } 890b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8918f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 892dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8933a40ed3dSBarry Smith } else if (type == NORM_1) { 894329f5518SBarry Smith PetscReal *tmp,*tmp2; 895580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 896064f8208SBarry Smith *nrm = 0.0; 897637a0070SStefano Zampini v = av; 898d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 899d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes } 903b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 904d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 905064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9063501a2bdSLois Curfman McInnes } 9078627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 908d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9093a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 910329f5518SBarry Smith PetscReal ntemp; 9113501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 912b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 913ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9143501a2bdSLois Curfman McInnes } 915637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 9163a40ed3dSBarry Smith PetscFunctionReturn(0); 9173501a2bdSLois Curfman McInnes } 9183501a2bdSLois Curfman McInnes 919fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9203501a2bdSLois Curfman McInnes { 9213501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9223501a2bdSLois Curfman McInnes Mat B; 923d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9246849ba73SBarry Smith PetscErrorCode ierr; 925637a0070SStefano Zampini PetscInt j,i,lda; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 930ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 931d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9327adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9330298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 934637a0070SStefano Zampini } else B = *matout; 9353501a2bdSLois Curfman McInnes 936637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 937637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 938637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 939785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9403501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9411acff37aSSatish Balay for (j=0; j<n; j++) { 9423501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 943637a0070SStefano Zampini v += lda; 9443501a2bdSLois Curfman McInnes } 945637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 946606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9476d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9486d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 949cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9503501a2bdSLois Curfman McInnes *matout = B; 9513501a2bdSLois Curfman McInnes } else { 95228be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 955096963f5SLois Curfman McInnes } 956096963f5SLois Curfman McInnes 9576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9598965ea79SLois Curfman McInnes 9604994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 961273d9f13SBarry Smith { 962dfbe8321SBarry Smith PetscErrorCode ierr; 963273d9f13SBarry Smith 964273d9f13SBarry Smith PetscFunctionBegin; 96518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 96618992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 96718992e5dSStefano Zampini if (!A->preallocated) { 968f4259b30SLisandro Dalcin ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 96918992e5dSStefano Zampini } 970273d9f13SBarry Smith PetscFunctionReturn(0); 971273d9f13SBarry Smith } 972273d9f13SBarry Smith 973488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 974488007eeSBarry Smith { 975488007eeSBarry Smith PetscErrorCode ierr; 976488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 977488007eeSBarry Smith 978488007eeSBarry Smith PetscFunctionBegin; 979488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 980488007eeSBarry Smith PetscFunctionReturn(0); 981488007eeSBarry Smith } 982488007eeSBarry Smith 9837087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 984ba337c44SJed Brown { 985ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 986ba337c44SJed Brown PetscErrorCode ierr; 987ba337c44SJed Brown 988ba337c44SJed Brown PetscFunctionBegin; 989ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 990ba337c44SJed Brown PetscFunctionReturn(0); 991ba337c44SJed Brown } 992ba337c44SJed Brown 993ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 994ba337c44SJed Brown { 995ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 996ba337c44SJed Brown PetscErrorCode ierr; 997ba337c44SJed Brown 998ba337c44SJed Brown PetscFunctionBegin; 999ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1000ba337c44SJed Brown PetscFunctionReturn(0); 1001ba337c44SJed Brown } 1002ba337c44SJed Brown 1003ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1004ba337c44SJed Brown { 1005ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1006ba337c44SJed Brown PetscErrorCode ierr; 1007ba337c44SJed Brown 1008ba337c44SJed Brown PetscFunctionBegin; 1009ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1010ba337c44SJed Brown PetscFunctionReturn(0); 1011ba337c44SJed Brown } 1012ba337c44SJed Brown 101349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 101449a6ff4bSBarry Smith { 101549a6ff4bSBarry Smith PetscErrorCode ierr; 1016637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101749a6ff4bSBarry Smith 101849a6ff4bSBarry Smith PetscFunctionBegin; 1019637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1020637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1021637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 102249a6ff4bSBarry Smith PetscFunctionReturn(0); 102349a6ff4bSBarry Smith } 102449a6ff4bSBarry Smith 102552c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 102652c5f739Sprj- 10270716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10280716a85fSBarry Smith { 10290716a85fSBarry Smith PetscErrorCode ierr; 10300716a85fSBarry Smith PetscInt i,n; 10310716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10320716a85fSBarry Smith PetscReal *work; 10330716a85fSBarry Smith 10340716a85fSBarry Smith PetscFunctionBegin; 10350298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1036785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10370716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10380716a85fSBarry Smith if (type == NORM_2) { 10390716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10400716a85fSBarry Smith } 10410716a85fSBarry Smith if (type == NORM_INFINITY) { 1042b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10430716a85fSBarry Smith } else { 1044b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10450716a85fSBarry Smith } 10460716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10470716a85fSBarry Smith if (type == NORM_2) { 10488f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10490716a85fSBarry Smith } 10500716a85fSBarry Smith PetscFunctionReturn(0); 10510716a85fSBarry Smith } 10520716a85fSBarry Smith 1053637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10546947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10556947451fSStefano Zampini { 10566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10576947451fSStefano Zampini PetscErrorCode ierr; 10586947451fSStefano Zampini PetscInt lda; 10596947451fSStefano Zampini 10606947451fSStefano Zampini PetscFunctionBegin; 1061616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1062616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10636947451fSStefano Zampini if (!a->cvec) { 10646947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1065616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10666947451fSStefano Zampini } 10676947451fSStefano Zampini a->vecinuse = col + 1; 10686947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10696947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10706947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10716947451fSStefano Zampini *v = a->cvec; 10726947451fSStefano Zampini PetscFunctionReturn(0); 10736947451fSStefano Zampini } 10746947451fSStefano Zampini 10756947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10766947451fSStefano Zampini { 10776947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10786947451fSStefano Zampini PetscErrorCode ierr; 10796947451fSStefano Zampini 10806947451fSStefano Zampini PetscFunctionBegin; 10815ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10826947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10836947451fSStefano Zampini a->vecinuse = 0; 10846947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10856947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10866947451fSStefano Zampini *v = NULL; 10876947451fSStefano Zampini PetscFunctionReturn(0); 10886947451fSStefano Zampini } 10896947451fSStefano Zampini 10906947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10916947451fSStefano Zampini { 10926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10936947451fSStefano Zampini PetscInt lda; 10946947451fSStefano Zampini PetscErrorCode ierr; 10956947451fSStefano Zampini 10966947451fSStefano Zampini PetscFunctionBegin; 1097616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1098616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10996947451fSStefano Zampini if (!a->cvec) { 11006947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1101616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11026947451fSStefano Zampini } 11036947451fSStefano Zampini a->vecinuse = col + 1; 11046947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11056947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11066947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11076947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 11086947451fSStefano Zampini *v = a->cvec; 11096947451fSStefano Zampini PetscFunctionReturn(0); 11106947451fSStefano Zampini } 11116947451fSStefano Zampini 11126947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11136947451fSStefano Zampini { 11146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11156947451fSStefano Zampini PetscErrorCode ierr; 11166947451fSStefano Zampini 11176947451fSStefano Zampini PetscFunctionBegin; 1118616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1119616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11206947451fSStefano Zampini a->vecinuse = 0; 11216947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11226947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11236947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11246947451fSStefano Zampini *v = NULL; 11256947451fSStefano Zampini PetscFunctionReturn(0); 11266947451fSStefano Zampini } 11276947451fSStefano Zampini 11286947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11296947451fSStefano Zampini { 11306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11316947451fSStefano Zampini PetscErrorCode ierr; 11326947451fSStefano Zampini PetscInt lda; 11336947451fSStefano Zampini 11346947451fSStefano Zampini PetscFunctionBegin; 1135616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1136616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11376947451fSStefano Zampini if (!a->cvec) { 11386947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1139616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11406947451fSStefano Zampini } 11416947451fSStefano Zampini a->vecinuse = col + 1; 11426947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11436947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11446947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11456947451fSStefano Zampini *v = a->cvec; 11466947451fSStefano Zampini PetscFunctionReturn(0); 11476947451fSStefano Zampini } 11486947451fSStefano Zampini 11496947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11506947451fSStefano Zampini { 11516947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11526947451fSStefano Zampini PetscErrorCode ierr; 11536947451fSStefano Zampini 11546947451fSStefano Zampini PetscFunctionBegin; 1155616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1156616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11576947451fSStefano Zampini a->vecinuse = 0; 11586947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11596947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11606947451fSStefano Zampini *v = NULL; 11616947451fSStefano Zampini PetscFunctionReturn(0); 11626947451fSStefano Zampini } 11636947451fSStefano Zampini 1164637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1165637a0070SStefano Zampini { 1166637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1167637a0070SStefano Zampini PetscErrorCode ierr; 1168637a0070SStefano Zampini 1169637a0070SStefano Zampini PetscFunctionBegin; 1170616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1171616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1172637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1173637a0070SStefano Zampini PetscFunctionReturn(0); 1174637a0070SStefano Zampini } 1175637a0070SStefano Zampini 1176637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1177637a0070SStefano Zampini { 1178637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1179637a0070SStefano Zampini PetscErrorCode ierr; 1180637a0070SStefano Zampini 1181637a0070SStefano Zampini PetscFunctionBegin; 1182616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1183616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1184637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1185637a0070SStefano Zampini PetscFunctionReturn(0); 1186637a0070SStefano Zampini } 1187637a0070SStefano Zampini 1188d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1189d5ea218eSStefano Zampini { 1190d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1191d5ea218eSStefano Zampini PetscErrorCode ierr; 1192d5ea218eSStefano Zampini 1193d5ea218eSStefano Zampini PetscFunctionBegin; 1194616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1195616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1196d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1197d5ea218eSStefano Zampini PetscFunctionReturn(0); 1198d5ea218eSStefano Zampini } 1199d5ea218eSStefano Zampini 1200637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1201637a0070SStefano Zampini { 1202637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1203637a0070SStefano Zampini PetscErrorCode ierr; 1204637a0070SStefano Zampini 1205637a0070SStefano Zampini PetscFunctionBegin; 1206637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1207637a0070SStefano Zampini PetscFunctionReturn(0); 1208637a0070SStefano Zampini } 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1211637a0070SStefano Zampini { 1212637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1213637a0070SStefano Zampini PetscErrorCode ierr; 1214637a0070SStefano Zampini 1215637a0070SStefano Zampini PetscFunctionBegin; 1216637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1217637a0070SStefano Zampini PetscFunctionReturn(0); 1218637a0070SStefano Zampini } 1219637a0070SStefano Zampini 1220637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1221637a0070SStefano Zampini { 1222637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1223637a0070SStefano Zampini PetscErrorCode ierr; 1224637a0070SStefano Zampini 1225637a0070SStefano Zampini PetscFunctionBegin; 1226637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1227637a0070SStefano Zampini PetscFunctionReturn(0); 1228637a0070SStefano Zampini } 1229637a0070SStefano Zampini 1230637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1231637a0070SStefano Zampini { 1232637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1233637a0070SStefano Zampini PetscErrorCode ierr; 1234637a0070SStefano Zampini 1235637a0070SStefano Zampini PetscFunctionBegin; 1236637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1237637a0070SStefano Zampini PetscFunctionReturn(0); 1238637a0070SStefano Zampini } 1239637a0070SStefano Zampini 1240637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1241637a0070SStefano Zampini { 1242637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1243637a0070SStefano Zampini PetscErrorCode ierr; 1244637a0070SStefano Zampini 1245637a0070SStefano Zampini PetscFunctionBegin; 1246637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1247637a0070SStefano Zampini PetscFunctionReturn(0); 1248637a0070SStefano Zampini } 1249637a0070SStefano Zampini 1250637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1251637a0070SStefano Zampini { 1252637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1253637a0070SStefano Zampini PetscErrorCode ierr; 1254637a0070SStefano Zampini 1255637a0070SStefano Zampini PetscFunctionBegin; 1256637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1257637a0070SStefano Zampini PetscFunctionReturn(0); 1258637a0070SStefano Zampini } 1259637a0070SStefano Zampini 12606947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12616947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12626947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12636947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12646947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12656947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12665ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12676947451fSStefano Zampini 1268637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1269637a0070SStefano Zampini { 1270637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1271637a0070SStefano Zampini PetscErrorCode ierr; 1272637a0070SStefano Zampini 1273637a0070SStefano Zampini PetscFunctionBegin; 1274616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1275616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1276637a0070SStefano Zampini if (d->A) { 1277637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1278637a0070SStefano Zampini } 1279637a0070SStefano Zampini mat->boundtocpu = bind; 12806947451fSStefano Zampini if (!bind) { 12816947451fSStefano Zampini PetscBool iscuda; 12826947451fSStefano Zampini 12836947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12846947451fSStefano Zampini if (!iscuda) { 12856947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1286616b8fbbSStefano Zampini } 1287616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1288616b8fbbSStefano Zampini if (!iscuda) { 12895ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12906947451fSStefano Zampini } 12916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12936947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12946947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12956947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12966947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12976947451fSStefano Zampini } else { 12986947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12996947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 13006947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 13016947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 13026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 13036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1304616b8fbbSStefano Zampini } 1305616b8fbbSStefano Zampini if (d->cmat) { 1306616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 13076947451fSStefano Zampini } 1308637a0070SStefano Zampini PetscFunctionReturn(0); 1309637a0070SStefano Zampini } 1310637a0070SStefano Zampini 1311637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1312637a0070SStefano Zampini { 1313637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1314637a0070SStefano Zampini PetscErrorCode ierr; 1315637a0070SStefano Zampini PetscBool iscuda; 1316637a0070SStefano Zampini 1317637a0070SStefano Zampini PetscFunctionBegin; 1318d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1319637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1320637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1321637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1322637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1323637a0070SStefano Zampini if (!d->A) { 1324637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1325637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1326637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1327637a0070SStefano Zampini } 1328637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1329637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1330637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1331637a0070SStefano Zampini PetscFunctionReturn(0); 1332637a0070SStefano Zampini } 1333637a0070SStefano Zampini #endif 1334637a0070SStefano Zampini 133573a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 133673a71a0fSBarry Smith { 133773a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133873a71a0fSBarry Smith PetscErrorCode ierr; 133973a71a0fSBarry Smith 134073a71a0fSBarry Smith PetscFunctionBegin; 1341637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 134273a71a0fSBarry Smith PetscFunctionReturn(0); 134373a71a0fSBarry Smith } 134473a71a0fSBarry Smith 13453b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13463b49f96aSBarry Smith { 13473b49f96aSBarry Smith PetscFunctionBegin; 13483b49f96aSBarry Smith *missing = PETSC_FALSE; 13493b49f96aSBarry Smith PetscFunctionReturn(0); 13503b49f96aSBarry Smith } 13513b49f96aSBarry Smith 13524222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1353cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13546718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13556718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13566718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13576718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1358cc48ffa7SToby Isaac 13598965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 136009dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 136109dc0095SBarry Smith MatGetRow_MPIDense, 136209dc0095SBarry Smith MatRestoreRow_MPIDense, 136309dc0095SBarry Smith MatMult_MPIDense, 136497304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13657c922b88SBarry Smith MatMultTranspose_MPIDense, 13667c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin /* 10*/ NULL, 1371f4259b30SLisandro Dalcin NULL, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 137409dc0095SBarry Smith MatTranspose_MPIDense, 137597304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13766e4ee0c6SHong Zhang MatEqual_MPIDense, 137709dc0095SBarry Smith MatGetDiagonal_MPIDense, 13785b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137909dc0095SBarry Smith MatNorm_MPIDense, 138097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 138109dc0095SBarry Smith MatAssemblyEnd_MPIDense, 138209dc0095SBarry Smith MatSetOption_MPIDense, 138309dc0095SBarry Smith MatZeroEntries_MPIDense, 1384d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1385f4259b30SLisandro Dalcin NULL, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 13894994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1393f4259b30SLisandro Dalcin NULL, 1394d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 14007dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 140209dc0095SBarry Smith MatGetValues_MPIDense, 1403a76f77c3SStefano Zampini MatCopy_MPIDense, 1404f4259b30SLisandro Dalcin /* 44*/ NULL, 140509dc0095SBarry Smith MatScale_MPIDense, 14067d68702bSBarry Smith MatShift_Basic, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 140973a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin /* 54*/ NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 14197dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1420b9b97703SBarry Smith MatDestroy_MPIDense, 1421b9b97703SBarry Smith MatView_MPIDense, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin /* 64*/ NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin /* 69*/ NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin /* 74*/ NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin /* 79*/ NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 14435bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin /* 89*/ NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL, 1454f4259b30SLisandro Dalcin /* 94*/ NULL, 1455f4259b30SLisandro Dalcin NULL, 14566718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1457cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 14594222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin NULL, 1462ba337c44SJed Brown MatConjugate_MPIDense, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin /*104*/ NULL, 1465ba337c44SJed Brown MatRealPart_MPIDense, 1466ba337c44SJed Brown MatImaginaryPart_MPIDense, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin /*109*/ NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin NULL, 147249a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14733b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1474f4259b30SLisandro Dalcin /*114*/ NULL, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin /*119*/ NULL, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin /*124*/ NULL, 14853964eb88SJed Brown MatGetColumnNorms_MPIDense, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin /*129*/ NULL, 1490f4259b30SLisandro Dalcin NULL, 14916718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1492cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin /*134*/ NULL, 1495f4259b30SLisandro Dalcin NULL, 1496f4259b30SLisandro Dalcin NULL, 1497f4259b30SLisandro Dalcin NULL, 1498f4259b30SLisandro Dalcin NULL, 1499f4259b30SLisandro Dalcin /*139*/ NULL, 1500f4259b30SLisandro Dalcin NULL, 1501f4259b30SLisandro Dalcin NULL, 1502f4259b30SLisandro Dalcin NULL, 1503f4259b30SLisandro Dalcin NULL, 15044222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1505f4259b30SLisandro Dalcin /*145*/ NULL, 1506f4259b30SLisandro Dalcin NULL, 1507f4259b30SLisandro Dalcin NULL 1508ba337c44SJed Brown }; 15098965ea79SLois Curfman McInnes 15107087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1511a23d5eceSKris Buschelman { 1512637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1513637a0070SStefano Zampini PetscBool iscuda; 1514dfbe8321SBarry Smith PetscErrorCode ierr; 1515a23d5eceSKris Buschelman 1516a23d5eceSKris Buschelman PetscFunctionBegin; 1517616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 151834ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 151934ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1520637a0070SStefano Zampini if (!a->A) { 1521f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15223bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1523637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1524637a0070SStefano Zampini } 1525637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1526637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1527637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1528637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1529a23d5eceSKris Buschelman PetscFunctionReturn(0); 1530a23d5eceSKris Buschelman } 1531a23d5eceSKris Buschelman 15324e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15334e29119aSPierre Jolivet { 15344e29119aSPierre Jolivet Mat B,C; 15354e29119aSPierre Jolivet PetscErrorCode ierr; 15364e29119aSPierre Jolivet 15374e29119aSPierre Jolivet PetscFunctionBegin; 15384e29119aSPierre Jolivet ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C);CHKERRQ(ierr); 15394e29119aSPierre Jolivet ierr = MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15404e29119aSPierre Jolivet ierr = MatDestroy(&C);CHKERRQ(ierr); 15414e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15424e29119aSPierre Jolivet C = *newmat; 15434e29119aSPierre Jolivet } else C = NULL; 15444e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15454e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15464e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15474e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15484e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15494e29119aSPierre Jolivet PetscFunctionReturn(0); 15504e29119aSPierre Jolivet } 15514e29119aSPierre Jolivet 15524e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15534e29119aSPierre Jolivet { 15544e29119aSPierre Jolivet Mat B,C; 15554e29119aSPierre Jolivet PetscErrorCode ierr; 15564e29119aSPierre Jolivet 15574e29119aSPierre Jolivet PetscFunctionBegin; 15584e29119aSPierre Jolivet ierr = MatDenseGetLocalMatrix(A,&C);CHKERRQ(ierr); 15594e29119aSPierre Jolivet ierr = MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15604e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15614e29119aSPierre Jolivet C = *newmat; 15624e29119aSPierre Jolivet } else C = NULL; 15634e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15644e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15654e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15664e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15674e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15684e29119aSPierre Jolivet PetscFunctionReturn(0); 15694e29119aSPierre Jolivet } 15704e29119aSPierre Jolivet 157165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1572cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15738baccfbdSHong Zhang { 15748ea901baSHong Zhang Mat mat_elemental; 15758ea901baSHong Zhang PetscErrorCode ierr; 157632d7a744SHong Zhang PetscScalar *v; 157732d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15788ea901baSHong Zhang 15798baccfbdSHong Zhang PetscFunctionBegin; 1580378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1581378336b6SHong Zhang mat_elemental = *newmat; 1582378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1583378336b6SHong Zhang } else { 1584378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1585378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1586378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1587378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 158832d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1589378336b6SHong Zhang } 1590378336b6SHong Zhang 159132d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 159232d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 159332d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15948ea901baSHong Zhang 1595637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 159632d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 159732d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15988ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15998ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160032d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 160132d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 16028ea901baSHong Zhang 1603511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 160428be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 16058ea901baSHong Zhang } else { 16068ea901baSHong Zhang *newmat = mat_elemental; 16078ea901baSHong Zhang } 16088baccfbdSHong Zhang PetscFunctionReturn(0); 16098baccfbdSHong Zhang } 161065b80a83SHong Zhang #endif 16118baccfbdSHong Zhang 1612af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 161386aefd0dSHong Zhang { 161486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 161586aefd0dSHong Zhang PetscErrorCode ierr; 161686aefd0dSHong Zhang 161786aefd0dSHong Zhang PetscFunctionBegin; 161886aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 161986aefd0dSHong Zhang PetscFunctionReturn(0); 162086aefd0dSHong Zhang } 162186aefd0dSHong Zhang 1622af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 162386aefd0dSHong Zhang { 162486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 162586aefd0dSHong Zhang PetscErrorCode ierr; 162686aefd0dSHong Zhang 162786aefd0dSHong Zhang PetscFunctionBegin; 162886aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 162986aefd0dSHong Zhang PetscFunctionReturn(0); 163086aefd0dSHong Zhang } 163186aefd0dSHong Zhang 163294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 163394e2cb23SJakub Kruzik { 163494e2cb23SJakub Kruzik PetscErrorCode ierr; 163594e2cb23SJakub Kruzik Mat_MPIDense *mat; 163694e2cb23SJakub Kruzik PetscInt m,nloc,N; 163794e2cb23SJakub Kruzik 163894e2cb23SJakub Kruzik PetscFunctionBegin; 163994e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 164094e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 164194e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 164294e2cb23SJakub Kruzik PetscInt sum; 164394e2cb23SJakub Kruzik 164494e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 164594e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 164694e2cb23SJakub Kruzik } 164794e2cb23SJakub Kruzik /* Check sum(n) = N */ 164894e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 164994e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 165094e2cb23SJakub Kruzik 165194e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 1652f2e2784eSPierre Jolivet ierr = MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 165394e2cb23SJakub Kruzik } 165494e2cb23SJakub Kruzik 165594e2cb23SJakub Kruzik /* numeric phase */ 165694e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 165794e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 165894e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 165994e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166094e2cb23SJakub Kruzik PetscFunctionReturn(0); 166194e2cb23SJakub Kruzik } 166294e2cb23SJakub Kruzik 1663637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1664637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1665637a0070SStefano Zampini { 1666637a0070SStefano Zampini Mat B; 1667637a0070SStefano Zampini Mat_MPIDense *m; 1668637a0070SStefano Zampini PetscErrorCode ierr; 1669637a0070SStefano Zampini 1670637a0070SStefano Zampini PetscFunctionBegin; 1671637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1672637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1673637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1674637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1675637a0070SStefano Zampini } 1676637a0070SStefano Zampini 1677637a0070SStefano Zampini B = *newmat; 1678637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1679637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1680637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1681637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1682637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1683637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16846718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1685637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16866718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1688637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1689637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1690637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1691637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1692637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1693637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1694637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1695d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1696637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1697637a0070SStefano Zampini if (m->A) { 1698637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1699637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1700637a0070SStefano Zampini } 1701637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1702637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1703637a0070SStefano Zampini PetscFunctionReturn(0); 1704637a0070SStefano Zampini } 1705637a0070SStefano Zampini 1706637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1707637a0070SStefano Zampini { 1708637a0070SStefano Zampini Mat B; 1709637a0070SStefano Zampini Mat_MPIDense *m; 1710637a0070SStefano Zampini PetscErrorCode ierr; 1711637a0070SStefano Zampini 1712637a0070SStefano Zampini PetscFunctionBegin; 1713637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1714637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1715637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1716637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1717637a0070SStefano Zampini } 1718637a0070SStefano Zampini 1719637a0070SStefano Zampini B = *newmat; 1720637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1721637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1722637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1723637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1724637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 17256718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1726637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 17276718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1728637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1729637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1730637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1731637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1732637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1733637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1734637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1735637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1736d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1737*f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1738637a0070SStefano Zampini if (m->A) { 1739637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1740637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1741637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1742637a0070SStefano Zampini } else { 1743637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1744637a0070SStefano Zampini } 1745637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1746637a0070SStefano Zampini 1747637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1748637a0070SStefano Zampini PetscFunctionReturn(0); 1749637a0070SStefano Zampini } 1750637a0070SStefano Zampini #endif 1751637a0070SStefano Zampini 17526947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17536947451fSStefano Zampini { 17546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17556947451fSStefano Zampini PetscErrorCode ierr; 17566947451fSStefano Zampini PetscInt lda; 17576947451fSStefano Zampini 17586947451fSStefano Zampini PetscFunctionBegin; 1759616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1760616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17616947451fSStefano Zampini if (!a->cvec) { 17626947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17636947451fSStefano Zampini } 17646947451fSStefano Zampini a->vecinuse = col + 1; 17656947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17666947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17676947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17686947451fSStefano Zampini *v = a->cvec; 17696947451fSStefano Zampini PetscFunctionReturn(0); 17706947451fSStefano Zampini } 17716947451fSStefano Zampini 17726947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17736947451fSStefano Zampini { 17746947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17756947451fSStefano Zampini PetscErrorCode ierr; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 17785ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17796947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17806947451fSStefano Zampini a->vecinuse = 0; 17816947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17826947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17836947451fSStefano Zampini *v = NULL; 17846947451fSStefano Zampini PetscFunctionReturn(0); 17856947451fSStefano Zampini } 17866947451fSStefano Zampini 17876947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17886947451fSStefano Zampini { 17896947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17906947451fSStefano Zampini PetscErrorCode ierr; 17916947451fSStefano Zampini PetscInt lda; 17926947451fSStefano Zampini 17936947451fSStefano Zampini PetscFunctionBegin; 1794616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1795616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17966947451fSStefano Zampini if (!a->cvec) { 17976947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17986947451fSStefano Zampini } 17996947451fSStefano Zampini a->vecinuse = col + 1; 18006947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18016947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18026947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18036947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 18046947451fSStefano Zampini *v = a->cvec; 18056947451fSStefano Zampini PetscFunctionReturn(0); 18066947451fSStefano Zampini } 18076947451fSStefano Zampini 18086947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 18096947451fSStefano Zampini { 18106947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18116947451fSStefano Zampini PetscErrorCode ierr; 18126947451fSStefano Zampini 18136947451fSStefano Zampini PetscFunctionBegin; 1814616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1815616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18166947451fSStefano Zampini a->vecinuse = 0; 18176947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18186947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 18196947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18206947451fSStefano Zampini *v = NULL; 18216947451fSStefano Zampini PetscFunctionReturn(0); 18226947451fSStefano Zampini } 18236947451fSStefano Zampini 18246947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18256947451fSStefano Zampini { 18266947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18276947451fSStefano Zampini PetscErrorCode ierr; 18286947451fSStefano Zampini PetscInt lda; 18296947451fSStefano Zampini 18306947451fSStefano Zampini PetscFunctionBegin; 1831616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1832616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18336947451fSStefano Zampini if (!a->cvec) { 18346947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 18356947451fSStefano Zampini } 18366947451fSStefano Zampini a->vecinuse = col + 1; 18376947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18386947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18396947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18406947451fSStefano Zampini *v = a->cvec; 18416947451fSStefano Zampini PetscFunctionReturn(0); 18426947451fSStefano Zampini } 18436947451fSStefano Zampini 18446947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18456947451fSStefano Zampini { 18466947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18476947451fSStefano Zampini PetscErrorCode ierr; 18486947451fSStefano Zampini 18496947451fSStefano Zampini PetscFunctionBegin; 1850616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1851616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18526947451fSStefano Zampini a->vecinuse = 0; 18536947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18546947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18556947451fSStefano Zampini *v = NULL; 18566947451fSStefano Zampini PetscFunctionReturn(0); 18576947451fSStefano Zampini } 18586947451fSStefano Zampini 18595ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18605ea7661aSPierre Jolivet { 18615ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1862616b8fbbSStefano Zampini Mat_MPIDense *c; 18635ea7661aSPierre Jolivet PetscErrorCode ierr; 1864616b8fbbSStefano Zampini MPI_Comm comm; 1865616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18665ea7661aSPierre Jolivet 18675ea7661aSPierre Jolivet PetscFunctionBegin; 1868616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1869616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1870616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18715ea7661aSPierre Jolivet if (!a->cmat) { 1872616b8fbbSStefano Zampini setup = PETSC_TRUE; 1873616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1874616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1875616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1876616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1877616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1878616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1879616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1880616b8fbbSStefano Zampini setup = PETSC_TRUE; 1881616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1882616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1883616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1884616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18855ea7661aSPierre Jolivet } 1886616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1887616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1888616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1889616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1890616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1891616b8fbbSStefano Zampini } 1892616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1893616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18945ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18955ea7661aSPierre Jolivet *v = a->cmat; 18965ea7661aSPierre Jolivet PetscFunctionReturn(0); 18975ea7661aSPierre Jolivet } 18985ea7661aSPierre Jolivet 18995ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 19005ea7661aSPierre Jolivet { 19015ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1902616b8fbbSStefano Zampini Mat_MPIDense *c; 19035ea7661aSPierre Jolivet PetscErrorCode ierr; 19045ea7661aSPierre Jolivet 19055ea7661aSPierre Jolivet PetscFunctionBegin; 1906616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1907616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1908616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 19095ea7661aSPierre Jolivet a->matinuse = 0; 1910616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1911616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 19125ea7661aSPierre Jolivet *v = NULL; 19135ea7661aSPierre Jolivet PetscFunctionReturn(0); 19145ea7661aSPierre Jolivet } 19155ea7661aSPierre Jolivet 1916002bc6daSRichard Tran Mills /*MC 1917002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1918002bc6daSRichard Tran Mills 1919002bc6daSRichard Tran Mills Options Database Keys: 1920002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1921002bc6daSRichard Tran Mills 1922002bc6daSRichard Tran Mills Level: beginner 1923002bc6daSRichard Tran Mills 1924002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1925002bc6daSRichard Tran Mills 1926002bc6daSRichard Tran Mills M*/ 19278cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1928273d9f13SBarry Smith { 1929273d9f13SBarry Smith Mat_MPIDense *a; 1930dfbe8321SBarry Smith PetscErrorCode ierr; 1931273d9f13SBarry Smith 1932273d9f13SBarry Smith PetscFunctionBegin; 1933b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1934b0a32e0cSBarry Smith mat->data = (void*)a; 1935273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1936273d9f13SBarry Smith 1937273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1938273d9f13SBarry Smith 1939273d9f13SBarry Smith /* build cache for off array entries formed */ 1940273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19412205254eSKarl Rupp 1942ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1943273d9f13SBarry Smith 1944273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1945f4259b30SLisandro Dalcin a->lvec = NULL; 1946f4259b30SLisandro Dalcin a->Mvctx = NULL; 1947273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1948273d9f13SBarry Smith 194949a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1950ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1951bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 19528572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 19538572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 19548572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 19556947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 19566947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1957d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1958d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1959d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 19606947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 19616947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 19626947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 19636947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 19646947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 19656947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 19665ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 19675ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19684e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense);CHKERRQ(ierr); 19694e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ);CHKERRQ(ierr); 19708baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19718baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19728baccfbdSHong Zhang #endif 1973d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1974d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1975d24d4204SJose E. Roman #endif 1976637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1977637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1978637a0070SStefano Zampini #endif 1979bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19804222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19814222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19826718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19836718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19846718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19856718818eSStefano Zampini #endif 19868949adfdSHong Zhang 1987af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1988af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 198938aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1990273d9f13SBarry Smith PetscFunctionReturn(0); 1991273d9f13SBarry Smith } 1992273d9f13SBarry Smith 1993209238afSKris Buschelman /*MC 1994637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1995637a0070SStefano Zampini 1996637a0070SStefano Zampini Options Database Keys: 1997637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1998637a0070SStefano Zampini 1999637a0070SStefano Zampini Level: beginner 2000637a0070SStefano Zampini 2001637a0070SStefano Zampini .seealso: 2002637a0070SStefano Zampini 2003637a0070SStefano Zampini M*/ 2004637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2005637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 2006637a0070SStefano Zampini { 2007637a0070SStefano Zampini PetscErrorCode ierr; 2008637a0070SStefano Zampini 2009637a0070SStefano Zampini PetscFunctionBegin; 201005035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 2011637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 2012637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 2013637a0070SStefano Zampini PetscFunctionReturn(0); 2014637a0070SStefano Zampini } 2015637a0070SStefano Zampini #endif 2016637a0070SStefano Zampini 2017637a0070SStefano Zampini /*MC 2018002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2019209238afSKris Buschelman 2020209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2021209238afSKris Buschelman and MATMPIDENSE otherwise. 2022209238afSKris Buschelman 2023209238afSKris Buschelman Options Database Keys: 2024209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2025209238afSKris Buschelman 2026209238afSKris Buschelman Level: beginner 2027209238afSKris Buschelman 202801b82886SBarry Smith 20296947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 20306947451fSStefano Zampini M*/ 20316947451fSStefano Zampini 20326947451fSStefano Zampini /*MC 20336947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20346947451fSStefano Zampini 20356947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20366947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20376947451fSStefano Zampini 20386947451fSStefano Zampini Options Database Keys: 20396947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20406947451fSStefano Zampini 20416947451fSStefano Zampini Level: beginner 20426947451fSStefano Zampini 20436947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 2044209238afSKris Buschelman M*/ 2045209238afSKris Buschelman 2046273d9f13SBarry Smith /*@C 2047273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2048273d9f13SBarry Smith 20498f490ea3SStefano Zampini Collective 2050273d9f13SBarry Smith 2051273d9f13SBarry Smith Input Parameters: 20521c4f3114SJed Brown . B - the matrix 20530298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2054273d9f13SBarry Smith to control all matrix memory allocation. 2055273d9f13SBarry Smith 2056273d9f13SBarry Smith Notes: 2057273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2058273d9f13SBarry Smith storage by columns. 2059273d9f13SBarry Smith 2060273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2061273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20620298fd71SBarry Smith set data=NULL. 2063273d9f13SBarry Smith 2064273d9f13SBarry Smith Level: intermediate 2065273d9f13SBarry Smith 2066273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 2067273d9f13SBarry Smith @*/ 20681c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2069273d9f13SBarry Smith { 20704ac538c5SBarry Smith PetscErrorCode ierr; 2071273d9f13SBarry Smith 2072273d9f13SBarry Smith PetscFunctionBegin; 2073d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20741c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2075273d9f13SBarry Smith PetscFunctionReturn(0); 2076273d9f13SBarry Smith } 2077273d9f13SBarry Smith 2078d3042a70SBarry Smith /*@ 2079637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2080d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2081d3042a70SBarry Smith into a matrix 2082d3042a70SBarry Smith 2083d3042a70SBarry Smith Not Collective 2084d3042a70SBarry Smith 2085d3042a70SBarry Smith Input Parameters: 2086d3042a70SBarry Smith + mat - the matrix 2087d3042a70SBarry Smith - array - the array in column major order 2088d3042a70SBarry Smith 2089d3042a70SBarry Smith Notes: 2090d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2091d3042a70SBarry Smith freed when the matrix is destroyed. 2092d3042a70SBarry Smith 2093d3042a70SBarry Smith Level: developer 2094d3042a70SBarry Smith 2095d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2096d3042a70SBarry Smith 2097d3042a70SBarry Smith @*/ 2098637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2099d3042a70SBarry Smith { 2100d3042a70SBarry Smith PetscErrorCode ierr; 2101637a0070SStefano Zampini 2102d3042a70SBarry Smith PetscFunctionBegin; 2103d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2104d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2105d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2106637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2107637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2108637a0070SStefano Zampini #endif 2109d3042a70SBarry Smith PetscFunctionReturn(0); 2110d3042a70SBarry Smith } 2111d3042a70SBarry Smith 2112d3042a70SBarry Smith /*@ 2113d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2114d3042a70SBarry Smith 2115d3042a70SBarry Smith Not Collective 2116d3042a70SBarry Smith 2117d3042a70SBarry Smith Input Parameters: 2118d3042a70SBarry Smith . mat - the matrix 2119d3042a70SBarry Smith 2120d3042a70SBarry Smith Notes: 2121d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2122d3042a70SBarry Smith 2123d3042a70SBarry Smith Level: developer 2124d3042a70SBarry Smith 2125d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2126d3042a70SBarry Smith 2127d3042a70SBarry Smith @*/ 2128d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2129d3042a70SBarry Smith { 2130d3042a70SBarry Smith PetscErrorCode ierr; 2131637a0070SStefano Zampini 2132d3042a70SBarry Smith PetscFunctionBegin; 2133d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2134d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2135d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2136d3042a70SBarry Smith PetscFunctionReturn(0); 2137d3042a70SBarry Smith } 2138d3042a70SBarry Smith 2139d5ea218eSStefano Zampini /*@ 2140d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2141d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2142d5ea218eSStefano Zampini into a matrix 2143d5ea218eSStefano Zampini 2144d5ea218eSStefano Zampini Not Collective 2145d5ea218eSStefano Zampini 2146d5ea218eSStefano Zampini Input Parameters: 2147d5ea218eSStefano Zampini + mat - the matrix 2148d5ea218eSStefano Zampini - array - the array in column major order 2149d5ea218eSStefano Zampini 2150d5ea218eSStefano Zampini Notes: 2151d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2152d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2153d5ea218eSStefano Zampini 2154d5ea218eSStefano Zampini Level: developer 2155d5ea218eSStefano Zampini 2156d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2157d5ea218eSStefano Zampini @*/ 2158d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2159d5ea218eSStefano Zampini { 2160d5ea218eSStefano Zampini PetscErrorCode ierr; 2161d5ea218eSStefano Zampini 2162d5ea218eSStefano Zampini PetscFunctionBegin; 2163d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2164d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2165d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2166d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2167d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2168d5ea218eSStefano Zampini #endif 2169d5ea218eSStefano Zampini PetscFunctionReturn(0); 2170d5ea218eSStefano Zampini } 2171d5ea218eSStefano Zampini 2172637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21738965ea79SLois Curfman McInnes /*@C 2174637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2175637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2176637a0070SStefano Zampini into a matrix 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini Not Collective 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini Input Parameters: 2181637a0070SStefano Zampini + mat - the matrix 2182637a0070SStefano Zampini - array - the array in column major order 2183637a0070SStefano Zampini 2184637a0070SStefano Zampini Notes: 2185637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2186637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2187637a0070SStefano Zampini 2188637a0070SStefano Zampini Level: developer 2189637a0070SStefano Zampini 2190637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2191637a0070SStefano Zampini @*/ 2192637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2193637a0070SStefano Zampini { 2194637a0070SStefano Zampini PetscErrorCode ierr; 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini PetscFunctionBegin; 2197d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2198637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2199637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2200637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2201637a0070SStefano Zampini PetscFunctionReturn(0); 2202637a0070SStefano Zampini } 2203637a0070SStefano Zampini 2204637a0070SStefano Zampini /*@C 2205637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2206637a0070SStefano Zampini 2207637a0070SStefano Zampini Not Collective 2208637a0070SStefano Zampini 2209637a0070SStefano Zampini Input Parameters: 2210637a0070SStefano Zampini . mat - the matrix 2211637a0070SStefano Zampini 2212637a0070SStefano Zampini Notes: 2213637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2214637a0070SStefano Zampini 2215637a0070SStefano Zampini Level: developer 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2218637a0070SStefano Zampini 2219637a0070SStefano Zampini @*/ 2220637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2221637a0070SStefano Zampini { 2222637a0070SStefano Zampini PetscErrorCode ierr; 2223637a0070SStefano Zampini 2224637a0070SStefano Zampini PetscFunctionBegin; 2225d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2226637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2227637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2228637a0070SStefano Zampini PetscFunctionReturn(0); 2229637a0070SStefano Zampini } 2230637a0070SStefano Zampini 2231637a0070SStefano Zampini /*@C 2232d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2233d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2234d5ea218eSStefano Zampini into a matrix 2235d5ea218eSStefano Zampini 2236d5ea218eSStefano Zampini Not Collective 2237d5ea218eSStefano Zampini 2238d5ea218eSStefano Zampini Input Parameters: 2239d5ea218eSStefano Zampini + mat - the matrix 2240d5ea218eSStefano Zampini - array - the array in column major order 2241d5ea218eSStefano Zampini 2242d5ea218eSStefano Zampini Notes: 2243d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2244d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2245d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2246d5ea218eSStefano Zampini 2247d5ea218eSStefano Zampini Level: developer 2248d5ea218eSStefano Zampini 2249d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2250d5ea218eSStefano Zampini @*/ 2251d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2252d5ea218eSStefano Zampini { 2253d5ea218eSStefano Zampini PetscErrorCode ierr; 2254d5ea218eSStefano Zampini 2255d5ea218eSStefano Zampini PetscFunctionBegin; 2256d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2257d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2258d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2259d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2260d5ea218eSStefano Zampini PetscFunctionReturn(0); 2261d5ea218eSStefano Zampini } 2262d5ea218eSStefano Zampini 2263d5ea218eSStefano Zampini /*@C 2264637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2265637a0070SStefano Zampini 2266637a0070SStefano Zampini Not Collective 2267637a0070SStefano Zampini 2268637a0070SStefano Zampini Input Parameters: 2269637a0070SStefano Zampini . A - the matrix 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Output Parameters 2272637a0070SStefano Zampini . array - the GPU array in column major order 2273637a0070SStefano Zampini 2274637a0070SStefano Zampini Notes: 2275637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2276637a0070SStefano Zampini 2277637a0070SStefano Zampini Level: developer 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2280637a0070SStefano Zampini @*/ 2281637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2282637a0070SStefano Zampini { 2283637a0070SStefano Zampini PetscErrorCode ierr; 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini PetscFunctionBegin; 2286d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2287637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2288637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2289637a0070SStefano Zampini PetscFunctionReturn(0); 2290637a0070SStefano Zampini } 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini /*@C 2293637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2294637a0070SStefano Zampini 2295637a0070SStefano Zampini Not Collective 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini Input Parameters: 2298637a0070SStefano Zampini + A - the matrix 2299637a0070SStefano Zampini - array - the GPU array in column major order 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Notes: 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini Level: developer 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2306637a0070SStefano Zampini @*/ 2307637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2308637a0070SStefano Zampini { 2309637a0070SStefano Zampini PetscErrorCode ierr; 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini PetscFunctionBegin; 2312d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2313637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2314637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2315637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2316637a0070SStefano Zampini PetscFunctionReturn(0); 2317637a0070SStefano Zampini } 2318637a0070SStefano Zampini 2319637a0070SStefano Zampini /*@C 2320637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Not Collective 2323637a0070SStefano Zampini 2324637a0070SStefano Zampini Input Parameters: 2325637a0070SStefano Zampini . A - the matrix 2326637a0070SStefano Zampini 2327637a0070SStefano Zampini Output Parameters 2328637a0070SStefano Zampini . array - the GPU array in column major order 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini Notes: 2331637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Level: developer 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2336637a0070SStefano Zampini @*/ 2337637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2338637a0070SStefano Zampini { 2339637a0070SStefano Zampini PetscErrorCode ierr; 2340637a0070SStefano Zampini 2341637a0070SStefano Zampini PetscFunctionBegin; 2342d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2343637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2344637a0070SStefano Zampini PetscFunctionReturn(0); 2345637a0070SStefano Zampini } 2346637a0070SStefano Zampini 2347637a0070SStefano Zampini /*@C 2348637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2349637a0070SStefano Zampini 2350637a0070SStefano Zampini Not Collective 2351637a0070SStefano Zampini 2352637a0070SStefano Zampini Input Parameters: 2353637a0070SStefano Zampini + A - the matrix 2354637a0070SStefano Zampini - array - the GPU array in column major order 2355637a0070SStefano Zampini 2356637a0070SStefano Zampini Notes: 2357637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2358637a0070SStefano Zampini 2359637a0070SStefano Zampini Level: developer 2360637a0070SStefano Zampini 2361637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2362637a0070SStefano Zampini @*/ 2363637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2364637a0070SStefano Zampini { 2365637a0070SStefano Zampini PetscErrorCode ierr; 2366637a0070SStefano Zampini 2367637a0070SStefano Zampini PetscFunctionBegin; 2368637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2369637a0070SStefano Zampini PetscFunctionReturn(0); 2370637a0070SStefano Zampini } 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini /*@C 2373637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2374637a0070SStefano Zampini 2375637a0070SStefano Zampini Not Collective 2376637a0070SStefano Zampini 2377637a0070SStefano Zampini Input Parameters: 2378637a0070SStefano Zampini . A - the matrix 2379637a0070SStefano Zampini 2380637a0070SStefano Zampini Output Parameters 2381637a0070SStefano Zampini . array - the GPU array in column major order 2382637a0070SStefano Zampini 2383637a0070SStefano Zampini Notes: 2384637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2385637a0070SStefano Zampini 2386637a0070SStefano Zampini Level: developer 2387637a0070SStefano Zampini 2388637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2389637a0070SStefano Zampini @*/ 2390637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2391637a0070SStefano Zampini { 2392637a0070SStefano Zampini PetscErrorCode ierr; 2393637a0070SStefano Zampini 2394637a0070SStefano Zampini PetscFunctionBegin; 2395d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2396637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2397637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2398637a0070SStefano Zampini PetscFunctionReturn(0); 2399637a0070SStefano Zampini } 2400637a0070SStefano Zampini 2401637a0070SStefano Zampini /*@C 2402637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2403637a0070SStefano Zampini 2404637a0070SStefano Zampini Not Collective 2405637a0070SStefano Zampini 2406637a0070SStefano Zampini Input Parameters: 2407637a0070SStefano Zampini + A - the matrix 2408637a0070SStefano Zampini - array - the GPU array in column major order 2409637a0070SStefano Zampini 2410637a0070SStefano Zampini Notes: 2411637a0070SStefano Zampini 2412637a0070SStefano Zampini Level: developer 2413637a0070SStefano Zampini 2414637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2415637a0070SStefano Zampini @*/ 2416637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2417637a0070SStefano Zampini { 2418637a0070SStefano Zampini PetscErrorCode ierr; 2419637a0070SStefano Zampini 2420637a0070SStefano Zampini PetscFunctionBegin; 2421d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2422637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2423637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2424637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2425637a0070SStefano Zampini PetscFunctionReturn(0); 2426637a0070SStefano Zampini } 2427637a0070SStefano Zampini #endif 2428637a0070SStefano Zampini 2429637a0070SStefano Zampini /*@C 2430637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 24318965ea79SLois Curfman McInnes 2432d083f849SBarry Smith Collective 2433db81eaa0SLois Curfman McInnes 24348965ea79SLois Curfman McInnes Input Parameters: 2435db81eaa0SLois Curfman McInnes + comm - MPI communicator 24368965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2437db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 24388965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2439db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24406cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2441dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24428965ea79SLois Curfman McInnes 24438965ea79SLois Curfman McInnes Output Parameter: 2444477f1c0bSLois Curfman McInnes . A - the matrix 24458965ea79SLois Curfman McInnes 2446b259b22eSLois Curfman McInnes Notes: 244739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 244839ddd567SLois Curfman McInnes storage by columns. 2449002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2450002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24518965ea79SLois Curfman McInnes 245218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 245318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24546cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 245518f449edSLois Curfman McInnes 24568965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24578965ea79SLois Curfman McInnes (possibly both). 24588965ea79SLois Curfman McInnes 2459027ccd11SLois Curfman McInnes Level: intermediate 2460027ccd11SLois Curfman McInnes 246139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 24628965ea79SLois Curfman McInnes @*/ 246369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24648965ea79SLois Curfman McInnes { 24656849ba73SBarry Smith PetscErrorCode ierr; 246613f74950SBarry Smith PetscMPIInt size; 24678965ea79SLois Curfman McInnes 24683a40ed3dSBarry Smith PetscFunctionBegin; 2469f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2470f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2471ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2472273d9f13SBarry Smith if (size > 1) { 24738f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24748f490ea3SStefano Zampini 2475273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2476273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24778f490ea3SStefano Zampini ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr); 24788f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24796cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24806cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24816cfe35ddSJose E. Roman } 2482273d9f13SBarry Smith } else { 2483273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2484273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24858c469469SLois Curfman McInnes } 24863a40ed3dSBarry Smith PetscFunctionReturn(0); 24878965ea79SLois Curfman McInnes } 24888965ea79SLois Curfman McInnes 2489637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2490637a0070SStefano Zampini /*@C 2491637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2492637a0070SStefano Zampini 2493637a0070SStefano Zampini Collective 2494637a0070SStefano Zampini 2495637a0070SStefano Zampini Input Parameters: 2496637a0070SStefano Zampini + comm - MPI communicator 2497637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2498637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2499637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2500637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2501637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2502637a0070SStefano Zampini to control matrix memory allocation. 2503637a0070SStefano Zampini 2504637a0070SStefano Zampini Output Parameter: 2505637a0070SStefano Zampini . A - the matrix 2506637a0070SStefano Zampini 2507637a0070SStefano Zampini Notes: 2508637a0070SStefano Zampini 2509637a0070SStefano Zampini Level: intermediate 2510637a0070SStefano Zampini 2511637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2512637a0070SStefano Zampini @*/ 2513637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2514637a0070SStefano Zampini { 2515637a0070SStefano Zampini PetscErrorCode ierr; 2516637a0070SStefano Zampini PetscMPIInt size; 2517637a0070SStefano Zampini 2518637a0070SStefano Zampini PetscFunctionBegin; 2519637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2520637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2521637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2522ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2523637a0070SStefano Zampini if (size > 1) { 2524637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2525637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2526637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2527637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2528637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2529637a0070SStefano Zampini } 2530637a0070SStefano Zampini } else { 2531637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2532637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2533637a0070SStefano Zampini } 2534637a0070SStefano Zampini PetscFunctionReturn(0); 2535637a0070SStefano Zampini } 2536637a0070SStefano Zampini #endif 2537637a0070SStefano Zampini 25386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 25398965ea79SLois Curfman McInnes { 25408965ea79SLois Curfman McInnes Mat mat; 25413501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2542dfbe8321SBarry Smith PetscErrorCode ierr; 25438965ea79SLois Curfman McInnes 25443a40ed3dSBarry Smith PetscFunctionBegin; 2545f4259b30SLisandro Dalcin *newmat = NULL; 2546ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2547d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 25487adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2549834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 25505aa7edbeSHong Zhang 2551d5f3da31SBarry Smith mat->factortype = A->factortype; 2552c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2553273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 25548965ea79SLois Curfman McInnes 2555e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 25563782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2557e04c1aa4SHong Zhang 25581e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 25591e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 25608965ea79SLois Curfman McInnes 25615609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2563637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 256401b82886SBarry Smith 25658965ea79SLois Curfman McInnes *newmat = mat; 25663a40ed3dSBarry Smith PetscFunctionReturn(0); 25678965ea79SLois Curfman McInnes } 25688965ea79SLois Curfman McInnes 2569eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2570eb91f321SVaclav Hapla { 2571eb91f321SVaclav Hapla PetscErrorCode ierr; 257287d5ce66SSatish Balay PetscBool isbinary; 257387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 257487d5ce66SSatish Balay PetscBool ishdf5; 257587d5ce66SSatish Balay #endif 2576eb91f321SVaclav Hapla 2577eb91f321SVaclav Hapla PetscFunctionBegin; 2578eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2579eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2580eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2581eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2582eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 258387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2584eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 258587d5ce66SSatish Balay #endif 2586eb91f321SVaclav Hapla if (isbinary) { 25878491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2588eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 258987d5ce66SSatish Balay } else if (ishdf5) { 2590eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2591eb91f321SVaclav Hapla #endif 259287d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2593eb91f321SVaclav Hapla PetscFunctionReturn(0); 2594eb91f321SVaclav Hapla } 2595eb91f321SVaclav Hapla 25966718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25976e4ee0c6SHong Zhang { 25986e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25996e4ee0c6SHong Zhang Mat a,b; 2600ace3abfcSBarry Smith PetscBool flg; 26016e4ee0c6SHong Zhang PetscErrorCode ierr; 260290ace30eSBarry Smith 26036e4ee0c6SHong Zhang PetscFunctionBegin; 26046e4ee0c6SHong Zhang a = matA->A; 26056e4ee0c6SHong Zhang b = matB->A; 26066e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2607b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 26086e4ee0c6SHong Zhang PetscFunctionReturn(0); 26096e4ee0c6SHong Zhang } 261090ace30eSBarry Smith 26116718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2612baa3c1c6SHong Zhang { 2613baa3c1c6SHong Zhang PetscErrorCode ierr; 26146718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2615baa3c1c6SHong Zhang 2616baa3c1c6SHong Zhang PetscFunctionBegin; 2617637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2618637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2619baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2620baa3c1c6SHong Zhang PetscFunctionReturn(0); 2621baa3c1c6SHong Zhang } 2622baa3c1c6SHong Zhang 26236718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2624cc48ffa7SToby Isaac { 2625cc48ffa7SToby Isaac PetscErrorCode ierr; 26266718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2627cc48ffa7SToby Isaac 2628cc48ffa7SToby Isaac PetscFunctionBegin; 2629cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2630faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2631cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2632cc48ffa7SToby Isaac PetscFunctionReturn(0); 2633cc48ffa7SToby Isaac } 2634cc48ffa7SToby Isaac 26356718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2636cb20be35SHong Zhang { 2637baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26386718818eSStefano Zampini Mat_TransMatMultDense *atb; 2639cb20be35SHong Zhang PetscErrorCode ierr; 2640cb20be35SHong Zhang MPI_Comm comm; 26416718818eSStefano Zampini PetscMPIInt size,*recvcounts; 26426718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2643637a0070SStefano Zampini const PetscScalar *atbarray; 2644d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2645e68c0b26SHong Zhang const PetscInt *ranges; 2646cb20be35SHong Zhang 2647cb20be35SHong Zhang PetscFunctionBegin; 26486718818eSStefano Zampini MatCheckProduct(C,3); 26496718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26506718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 26516718818eSStefano Zampini recvcounts = atb->recvcounts; 26526718818eSStefano Zampini sendbuf = atb->sendbuf; 26536718818eSStefano Zampini 2654cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2655ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2656e68c0b26SHong Zhang 2657c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2658637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2659cb20be35SHong Zhang 2660cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2661cb20be35SHong Zhang 2662660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2663637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2664637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2665baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2666c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2667cb20be35SHong Zhang } 2668cb20be35SHong Zhang } 2669637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2670637a0070SStefano Zampini 2671c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26720acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 2673ffc4695bSBarry Smith ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRMPI(ierr); 26740acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26750acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26760acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2677cb20be35SHong Zhang PetscFunctionReturn(0); 2678cb20be35SHong Zhang } 2679cb20be35SHong Zhang 26806718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2681cb20be35SHong Zhang { 2682cb20be35SHong Zhang PetscErrorCode ierr; 2683cb20be35SHong Zhang MPI_Comm comm; 2684baa3c1c6SHong Zhang PetscMPIInt size; 2685660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2686baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26876718818eSStefano Zampini PetscBool cisdense; 26880acaeb71SStefano Zampini PetscInt i; 26890acaeb71SStefano Zampini const PetscInt *ranges; 2690cb20be35SHong Zhang 2691cb20be35SHong Zhang PetscFunctionBegin; 26926718818eSStefano Zampini MatCheckProduct(C,3); 26936718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2694baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2695cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2696cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2697cb20be35SHong Zhang } 2698cb20be35SHong Zhang 26994222ddf1SHong Zhang /* create matrix product C */ 27006718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 27016718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 27026718818eSStefano Zampini if (!cisdense) { 27036718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 27046718818eSStefano Zampini } 270518992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2706baa3c1c6SHong Zhang 27074222ddf1SHong Zhang /* create data structure for reuse C */ 2708ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2709baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 27104222ddf1SHong Zhang cM = C->rmap->N; 27116718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 27120acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 27130acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2714baa3c1c6SHong Zhang 27156718818eSStefano Zampini C->product->data = atb; 27166718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2717cb20be35SHong Zhang PetscFunctionReturn(0); 2718cb20be35SHong Zhang } 2719cb20be35SHong Zhang 27204222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2721cb20be35SHong Zhang { 2722cb20be35SHong Zhang PetscErrorCode ierr; 2723cc48ffa7SToby Isaac MPI_Comm comm; 2724cc48ffa7SToby Isaac PetscMPIInt i, size; 2725cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2726cc48ffa7SToby Isaac PetscMPIInt tag; 27274222ddf1SHong Zhang PetscInt alg; 2728cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 27294222ddf1SHong Zhang Mat_Product *product = C->product; 27304222ddf1SHong Zhang PetscBool flg; 2731cc48ffa7SToby Isaac 2732cc48ffa7SToby Isaac PetscFunctionBegin; 27336718818eSStefano Zampini MatCheckProduct(C,4); 27346718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 27354222ddf1SHong Zhang /* check local size of A and B */ 2736637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2737cc48ffa7SToby Isaac 27384222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2739637a0070SStefano Zampini alg = flg ? 0 : 1; 2740cc48ffa7SToby Isaac 27414222ddf1SHong Zhang /* setup matrix product C */ 27424222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 27434222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 274418992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 27454222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 27464222ddf1SHong Zhang 27474222ddf1SHong Zhang /* create data structure for reuse C */ 27484222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2749ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2750cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2751cc48ffa7SToby Isaac abt->tag = tag; 2752faa55883SToby Isaac abt->alg = alg; 2753faa55883SToby Isaac switch (alg) { 27544222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2755cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2756cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2757cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2758faa55883SToby Isaac break; 27594222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2760faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2761faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2762faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2763faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2764faa55883SToby Isaac break; 2765faa55883SToby Isaac } 2766cc48ffa7SToby Isaac 27676718818eSStefano Zampini C->product->data = abt; 27686718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 27694222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2770cc48ffa7SToby Isaac PetscFunctionReturn(0); 2771cc48ffa7SToby Isaac } 2772cc48ffa7SToby Isaac 2773faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2774cc48ffa7SToby Isaac { 2775cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27766718818eSStefano Zampini Mat_MatTransMultDense *abt; 2777cc48ffa7SToby Isaac PetscErrorCode ierr; 2778cc48ffa7SToby Isaac MPI_Comm comm; 2779cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2780f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2781cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2782cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2783637a0070SStefano Zampini const PetscScalar *av,*bv; 278423fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2785cc48ffa7SToby Isaac MPI_Request reqs[2]; 2786cc48ffa7SToby Isaac const PetscInt *ranges; 2787cc48ffa7SToby Isaac 2788cc48ffa7SToby Isaac PetscFunctionBegin; 27896718818eSStefano Zampini MatCheckProduct(C,3); 27906718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27916718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27926718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2793ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2794ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2795637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2796637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 27970acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2798637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2799637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2800637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2801637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2802637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2803637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2804cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2805cc48ffa7SToby Isaac bn = B->rmap->n; 2806637a0070SStefano Zampini if (blda == bn) { 2807637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2808cc48ffa7SToby Isaac } else { 2809cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2810cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2811cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2812637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2813cc48ffa7SToby Isaac } 2814cc48ffa7SToby Isaac } 2815cc48ffa7SToby Isaac } 2816cc48ffa7SToby Isaac if (size > 1) { 2817cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2818cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2819cc48ffa7SToby Isaac } else { 2820cc48ffa7SToby Isaac sendto = recvfrom = 0; 2821cc48ffa7SToby Isaac } 2822cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2823cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2824cc48ffa7SToby Isaac recvisfrom = rank; 2825cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2826cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2827cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2828cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2829cc48ffa7SToby Isaac 2830cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2831cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2832cc48ffa7SToby Isaac sendsiz = cK * bn; 2833cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2834cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2835ffc4695bSBarry Smith ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRMPI(ierr); 2836ffc4695bSBarry Smith ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRMPI(ierr); 2837cc48ffa7SToby Isaac } 2838cc48ffa7SToby Isaac 2839cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2840cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 284150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2842cc48ffa7SToby Isaac 2843cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2844cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2845ffc4695bSBarry Smith ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 2846cc48ffa7SToby Isaac } 2847cc48ffa7SToby Isaac bn = nextbn; 2848cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2849cc48ffa7SToby Isaac sendbuf = recvbuf; 2850cc48ffa7SToby Isaac } 2851637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2852637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28530acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28540acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28550acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2856cc48ffa7SToby Isaac PetscFunctionReturn(0); 2857cc48ffa7SToby Isaac } 2858cc48ffa7SToby Isaac 2859faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2860faa55883SToby Isaac { 2861faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 28626718818eSStefano Zampini Mat_MatTransMultDense *abt; 2863faa55883SToby Isaac PetscErrorCode ierr; 2864faa55883SToby Isaac MPI_Comm comm; 2865637a0070SStefano Zampini PetscMPIInt size; 2866637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2867637a0070SStefano Zampini const PetscScalar *av,*bv; 2868637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2869faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2870637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2871faa55883SToby Isaac 2872faa55883SToby Isaac PetscFunctionBegin; 28736718818eSStefano Zampini MatCheckProduct(C,3); 28746718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28756718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2876faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2877ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2878637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2879637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28800acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2881637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2882637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2883637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2884637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2885637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2886faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2887faa55883SToby Isaac bn = B->rmap->n; 2888faa55883SToby Isaac sendbuf = abt->buf[0]; 2889faa55883SToby Isaac recvbuf = abt->buf[1]; 2890faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2891faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2892637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2893faa55883SToby Isaac } 2894faa55883SToby Isaac } 2895637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2896ffc4695bSBarry Smith ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRMPI(ierr); 2897faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2898faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2899faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 290050ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2901637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2902637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 29030acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 29040acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29050acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2906faa55883SToby Isaac PetscFunctionReturn(0); 2907faa55883SToby Isaac } 2908faa55883SToby Isaac 2909faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2910faa55883SToby Isaac { 29116718818eSStefano Zampini Mat_MatTransMultDense *abt; 2912faa55883SToby Isaac PetscErrorCode ierr; 2913faa55883SToby Isaac 2914faa55883SToby Isaac PetscFunctionBegin; 29156718818eSStefano Zampini MatCheckProduct(C,3); 29166718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 29176718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2918faa55883SToby Isaac switch (abt->alg) { 2919faa55883SToby Isaac case 1: 2920faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2921faa55883SToby Isaac break; 2922faa55883SToby Isaac default: 2923faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2924faa55883SToby Isaac break; 2925faa55883SToby Isaac } 2926faa55883SToby Isaac PetscFunctionReturn(0); 2927faa55883SToby Isaac } 2928faa55883SToby Isaac 29296718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2930320f2790SHong Zhang { 2931320f2790SHong Zhang PetscErrorCode ierr; 29326718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2933320f2790SHong Zhang 2934320f2790SHong Zhang PetscFunctionBegin; 2935320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2936320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2937320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2938320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2939320f2790SHong Zhang PetscFunctionReturn(0); 2940320f2790SHong Zhang } 2941320f2790SHong Zhang 29425242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2943320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2944320f2790SHong Zhang { 2945320f2790SHong Zhang PetscErrorCode ierr; 29466718818eSStefano Zampini Mat_MatMultDense *ab; 2947320f2790SHong Zhang 2948320f2790SHong Zhang PetscFunctionBegin; 29496718818eSStefano Zampini MatCheckProduct(C,3); 29506718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 29516718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2952de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2953de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 29544222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2955de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2956320f2790SHong Zhang PetscFunctionReturn(0); 2957320f2790SHong Zhang } 2958320f2790SHong Zhang 29596718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2960320f2790SHong Zhang { 2961320f2790SHong Zhang PetscErrorCode ierr; 2962320f2790SHong Zhang Mat Ae,Be,Ce; 2963320f2790SHong Zhang Mat_MatMultDense *ab; 2964320f2790SHong Zhang 2965320f2790SHong Zhang PetscFunctionBegin; 29666718818eSStefano Zampini MatCheckProduct(C,4); 29676718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 29684222ddf1SHong Zhang /* check local size of A and B */ 2969320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2970378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2971320f2790SHong Zhang } 2972320f2790SHong Zhang 29734222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29744222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29754222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29764222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29774222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29784222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2979320f2790SHong Zhang 29804222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29814222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29824222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29834222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29844222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2985320f2790SHong Zhang 29864222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29874222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29884222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29894222ddf1SHong Zhang 29904222ddf1SHong Zhang /* setup C */ 29914222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29924222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29934222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2994320f2790SHong Zhang 2995320f2790SHong Zhang /* create data structure for reuse Cdense */ 2996320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2997320f2790SHong Zhang ab->Ae = Ae; 2998320f2790SHong Zhang ab->Be = Be; 2999320f2790SHong Zhang ab->Ce = Ce; 30006718818eSStefano Zampini 30016718818eSStefano Zampini C->product->data = ab; 30026718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 30034222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 3004320f2790SHong Zhang PetscFunctionReturn(0); 3005320f2790SHong Zhang } 30064222ddf1SHong Zhang #endif 30074222ddf1SHong Zhang /* ----------------------------------------------- */ 30084222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30094222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 3010320f2790SHong Zhang { 3011320f2790SHong Zhang PetscFunctionBegin; 30124222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 30134222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3014320f2790SHong Zhang PetscFunctionReturn(0); 3015320f2790SHong Zhang } 30165242a7b1SHong Zhang #endif 301786aefd0dSHong Zhang 30184222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 30194222ddf1SHong Zhang { 30204222ddf1SHong Zhang Mat_Product *product = C->product; 30214222ddf1SHong Zhang Mat A = product->A,B=product->B; 30224222ddf1SHong Zhang 30234222ddf1SHong Zhang PetscFunctionBegin; 30244222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 30254222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 30266718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 30276718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 30284222ddf1SHong Zhang PetscFunctionReturn(0); 30294222ddf1SHong Zhang } 30304222ddf1SHong Zhang 30314222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 30324222ddf1SHong Zhang { 30334222ddf1SHong Zhang PetscErrorCode ierr; 30344222ddf1SHong Zhang Mat_Product *product = C->product; 30354222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 30364222ddf1SHong Zhang PetscInt alg,nalg = 2; 30374222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 30384222ddf1SHong Zhang 30394222ddf1SHong Zhang PetscFunctionBegin; 30404222ddf1SHong Zhang /* Set default algorithm */ 30414222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 30424222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 30434222ddf1SHong Zhang if (flg) { 30444222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30454222ddf1SHong Zhang } 30464222ddf1SHong Zhang 30474222ddf1SHong Zhang /* Get runtime option */ 30484222ddf1SHong Zhang if (product->api_user) { 30494222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 30504222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30514222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30524222ddf1SHong Zhang } else { 30534222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 30544222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30554222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30564222ddf1SHong Zhang } 30574222ddf1SHong Zhang if (flg) { 30584222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30594222ddf1SHong Zhang } 30604222ddf1SHong Zhang 30614222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 30624222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 30634222ddf1SHong Zhang PetscFunctionReturn(0); 30644222ddf1SHong Zhang } 30654222ddf1SHong Zhang 30664222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 30674222ddf1SHong Zhang { 30684222ddf1SHong Zhang PetscErrorCode ierr; 30694222ddf1SHong Zhang Mat_Product *product = C->product; 30704222ddf1SHong Zhang 30714222ddf1SHong Zhang PetscFunctionBegin; 30724222ddf1SHong Zhang switch (product->type) { 30734222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30744222ddf1SHong Zhang case MATPRODUCT_AB: 30754222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30764222ddf1SHong Zhang break; 30774222ddf1SHong Zhang #endif 30784222ddf1SHong Zhang case MATPRODUCT_AtB: 30794222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30804222ddf1SHong Zhang break; 30814222ddf1SHong Zhang case MATPRODUCT_ABt: 30824222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30834222ddf1SHong Zhang break; 30846718818eSStefano Zampini default: 30856718818eSStefano Zampini break; 30864222ddf1SHong Zhang } 30874222ddf1SHong Zhang PetscFunctionReturn(0); 30884222ddf1SHong Zhang } 3089