1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 447d993e7Ssuyashtn Portions of this code are under: 547d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 6ed3cc1f0SBarry Smith */ 7ed3cc1f0SBarry Smith 8c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 98949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 10baa3c1c6SHong Zhang #include <petscblaslapack.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 334f572ea9SToby Isaac PetscAssertPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 4466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 7266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 8466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 9666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 13166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 1449566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 1559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 1579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 16466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 35166976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 36066976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 3659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 36966976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 37866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 39266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 42666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 43566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 471cc2e6a90SBarry Smith 47266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 49166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 492d71ae5a4SJacob Faibussowitsch { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 494637a0070SStefano Zampini const PetscScalar *ax; 495637a0070SStefano Zampini PetscScalar *ay; 496d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4996f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5069566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 51066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 511d71ae5a4SJacob Faibussowitsch { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516096963f5SLois Curfman McInnes 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5199566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5209566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 53066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 531d71ae5a4SJacob Faibussowitsch { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 533637a0070SStefano Zampini const PetscScalar *ax; 534637a0070SStefano Zampini PetscScalar *ay; 535d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 536096963f5SLois Curfman McInnes 5373a40ed3dSBarry Smith PetscFunctionBegin; 5386f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5399566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 551d71ae5a4SJacob Faibussowitsch { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 55379560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 55479560b15SJacob Faibussowitsch PetscScalar *x; 555637a0070SStefano Zampini const PetscScalar *av; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 55979560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 56079560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 56179560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart * m; 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 566ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 56879560b15SJacob Faibussowitsch PetscCall(PetscArrayzero(x + i, nl - i)); 5699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5718965ea79SLois Curfman McInnes } 5728965ea79SLois Curfman McInnes 57366976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIDense(Mat mat) 574d71ae5a4SJacob Faibussowitsch { 5753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 576ed3cc1f0SBarry Smith 5773a40ed3dSBarry Smith PetscFunctionBegin; 5783ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5799566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 58028b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 58128b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 58701b82886SBarry Smith 5889566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5908baccfbdSHong Zhang 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6048baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6068baccfbdSHong Zhang #endif 607d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 609d24d4204SJose E. Roman #endif 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6136718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6232e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6242e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6252e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6313d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 6326718818eSStefano Zampini #endif 63347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 63447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 63547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 63647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 63747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 63847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 63947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 64047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 64147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 64247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 64347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 64447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 64547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 64647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 64747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 64847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 64947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 65047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 6513d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 65247d993e7Ssuyashtn #endif 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 663f8103e6bSStefano Zampini 664f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6668965ea79SLois Curfman McInnes } 66739ddd567SLois Curfman McInnes 66852c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 66952c5f739Sprj- 6709804daf3SBarry Smith #include <petscdraw.h> 671d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 672d71ae5a4SJacob Faibussowitsch { 67339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 674616b8fbbSStefano Zampini PetscMPIInt rank; 67519fd82e9SBarry Smith PetscViewerType vtype; 676ace3abfcSBarry Smith PetscBool iascii, isdraw; 677b0a32e0cSBarry Smith PetscViewer sviewer; 678f3ef73ceSBarry Smith PetscViewerFormat format; 6798965ea79SLois Curfman McInnes 6803a40ed3dSBarry Smith PetscFunctionBegin; 6819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 68432077d6dSBarry Smith if (iascii) { 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 687456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6884e220ebcSLois Curfman McInnes MatInfo info; 6899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6919371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6929371c9d4SSatish Balay (PetscInt)info.memory)); 6939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6956f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6998965ea79SLois Curfman McInnes } 700f1af5d2fSBarry Smith } else if (isdraw) { 701b0a32e0cSBarry Smith PetscDraw draw; 702ace3abfcSBarry Smith PetscBool isnull; 703f1af5d2fSBarry Smith 7049566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7059566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7063ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 707f1af5d2fSBarry Smith } 70877ed5343SBarry Smith 7097da1fb6eSBarry Smith { 7108965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7118965ea79SLois Curfman McInnes Mat A; 712d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 713ba8c8a56SBarry Smith PetscInt *cols; 714ba8c8a56SBarry Smith PetscScalar *vals; 7158965ea79SLois Curfman McInnes 7169566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 717dd400576SPatrick Sanan if (rank == 0) { 7189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 7193a40ed3dSBarry Smith } else { 7209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 7218965ea79SLois Curfman McInnes } 7227adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 7239566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 7249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 7258965ea79SLois Curfman McInnes 72639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72739ddd567SLois Curfman McInnes but it's quick for now */ 72851022da4SBarry Smith A->insertmode = INSERT_VALUES; 7292205254eSKarl Rupp 7302205254eSKarl Rupp row = mat->rmap->rstart; 7312205254eSKarl Rupp m = mdn->A->rmap->n; 7328965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 7339566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7349566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7359566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 73639ddd567SLois Curfman McInnes row++; 7378965ea79SLois Curfman McInnes } 7388965ea79SLois Curfman McInnes 7399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7419566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 742dd400576SPatrick Sanan if (rank == 0) { 7439566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7449566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7458965ea79SLois Curfman McInnes } 7469566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7479566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7489566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7498965ea79SLois Curfman McInnes } 7503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7518965ea79SLois Curfman McInnes } 7528965ea79SLois Curfman McInnes 75366976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 754d71ae5a4SJacob Faibussowitsch { 755ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7568965ea79SLois Curfman McInnes 757433994e6SBarry Smith PetscFunctionBegin; 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7620f5bd95cSBarry Smith 76332077d6dSBarry Smith if (iascii || issocket || isdraw) { 7649566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7651baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 76966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 770d71ae5a4SJacob Faibussowitsch { 7713501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7723501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7733966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7748965ea79SLois Curfman McInnes 7753a40ed3dSBarry Smith PetscFunctionBegin; 7764e220ebcSLois Curfman McInnes info->block_size = 1.0; 7772205254eSKarl Rupp 7789566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7792205254eSKarl Rupp 7809371c9d4SSatish Balay isend[0] = info->nz_used; 7819371c9d4SSatish Balay isend[1] = info->nz_allocated; 7829371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7839371c9d4SSatish Balay isend[3] = info->memory; 7849371c9d4SSatish Balay isend[4] = info->mallocs; 7858965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7864e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7874e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7884e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7894e220ebcSLois Curfman McInnes info->memory = isend[3]; 7904e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7918965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7932205254eSKarl Rupp 7944e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7954e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7964e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7974e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7984e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7998965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 8001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8012205254eSKarl Rupp 8024e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8034e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8044e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8054e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8064e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8078965ea79SLois Curfman McInnes } 8084e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8094e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8104e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8128965ea79SLois Curfman McInnes } 8138965ea79SLois Curfman McInnes 81466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 815d71ae5a4SJacob Faibussowitsch { 81639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 8178965ea79SLois Curfman McInnes 8183a40ed3dSBarry Smith PetscFunctionBegin; 81912c028f9SKris Buschelman switch (op) { 820512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82343674050SBarry Smith MatCheckPreallocated(A, 1); 8249566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82512c028f9SKris Buschelman break; 82612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82743674050SBarry Smith MatCheckPreallocated(A, 1); 8284e0d8c25SBarry Smith a->roworiented = flg; 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 83012c028f9SKris Buschelman break; 8318c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 83213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 834d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 835d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 836d71ae5a4SJacob Faibussowitsch break; 837d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 838d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 839d71ae5a4SJacob Faibussowitsch break; 84077e54ba9SKris Buschelman case MAT_SYMMETRIC: 84177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8429a4540c5SBarry Smith case MAT_HERMITIAN: 8439a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 844b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 845b94d7dedSBarry Smith case MAT_SPD: 846600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8475d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 848b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 849b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8509566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 85177e54ba9SKris Buschelman break; 852d71ae5a4SJacob Faibussowitsch default: 853d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8543a40ed3dSBarry Smith } 8553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8568965ea79SLois Curfman McInnes } 8578965ea79SLois Curfman McInnes 85866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 859d71ae5a4SJacob Faibussowitsch { 8605b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 861637a0070SStefano Zampini const PetscScalar *l; 862637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 863637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8645b2fa520SLois Curfman McInnes 8655b2fa520SLois Curfman McInnes PetscFunctionBegin; 8669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8689566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8695b2fa520SLois Curfman McInnes if (ll) { 8709566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 87108401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8735b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8745b2fa520SLois Curfman McInnes x = l[i]; 875637a0070SStefano Zampini v = vv + i; 8769371c9d4SSatish Balay for (j = 0; j < n; j++) { 8779371c9d4SSatish Balay (*v) *= x; 8789371c9d4SSatish Balay v += lda; 8799371c9d4SSatish Balay } 8805b2fa520SLois Curfman McInnes } 8819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8829566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8835b2fa520SLois Curfman McInnes } 8845b2fa520SLois Curfman McInnes if (rr) { 885637a0070SStefano Zampini const PetscScalar *ar; 886637a0070SStefano Zampini 8879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 88808401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8906f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8919566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8955b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8965b2fa520SLois Curfman McInnes x = r[i]; 897637a0070SStefano Zampini v = vv + i * lda; 8982205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 8995b2fa520SLois Curfman McInnes } 9009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9025b2fa520SLois Curfman McInnes } 9039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9055b2fa520SLois Curfman McInnes } 9065b2fa520SLois Curfman McInnes 90766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 908d71ae5a4SJacob Faibussowitsch { 9093501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 91013f74950SBarry Smith PetscInt i, j; 911616b8fbbSStefano Zampini PetscMPIInt size; 912329f5518SBarry Smith PetscReal sum = 0.0; 913637a0070SStefano Zampini const PetscScalar *av, *v; 9143501a2bdSLois Curfman McInnes 9153a40ed3dSBarry Smith PetscFunctionBegin; 9169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 917637a0070SStefano Zampini v = av; 9189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 919616b8fbbSStefano Zampini if (size == 1) { 9209566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 9213501a2bdSLois Curfman McInnes } else { 9223501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 923d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 9249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 9259371c9d4SSatish Balay v++; 9263501a2bdSLois Curfman McInnes } 9271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 9288f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 9299566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 9303a40ed3dSBarry Smith } else if (type == NORM_1) { 931329f5518SBarry Smith PetscReal *tmp, *tmp2; 9329566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 933064f8208SBarry Smith *nrm = 0.0; 934637a0070SStefano Zampini v = av; 935d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 936d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9379371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9389371c9d4SSatish Balay v++; 9393501a2bdSLois Curfman McInnes } 9403501a2bdSLois Curfman McInnes } 9411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 942d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 943064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9443501a2bdSLois Curfman McInnes } 9459566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9473a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 948329f5518SBarry Smith PetscReal ntemp; 9499566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 951ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9523501a2bdSLois Curfman McInnes } 9539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9553501a2bdSLois Curfman McInnes } 9563501a2bdSLois Curfman McInnes 95766976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 958d71ae5a4SJacob Faibussowitsch { 9593501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9603501a2bdSLois Curfman McInnes Mat B; 961d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 962637a0070SStefano Zampini PetscInt j, i, lda; 96387828ca2SBarry Smith PetscScalar *v; 9643501a2bdSLois Curfman McInnes 9653a40ed3dSBarry Smith PetscFunctionBegin; 9667fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 967cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9709566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9719566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 972637a0070SStefano Zampini } else B = *matout; 9733501a2bdSLois Curfman McInnes 9749371c9d4SSatish Balay m = a->A->rmap->n; 9759371c9d4SSatish Balay n = a->A->cmap->n; 9769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9779566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9793501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9801acff37aSSatish Balay for (j = 0; j < n; j++) { 9819566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 982637a0070SStefano Zampini v += lda; 9833501a2bdSLois Curfman McInnes } 9849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9859566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 988cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9893501a2bdSLois Curfman McInnes *matout = B; 9903501a2bdSLois Curfman McInnes } else { 9919566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9923501a2bdSLois Curfman McInnes } 9933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 994096963f5SLois Curfman McInnes } 995096963f5SLois Curfman McInnes 9966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 99752c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 9988965ea79SLois Curfman McInnes 99966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPIDense(Mat A) 1000d71ae5a4SJacob Faibussowitsch { 1001273d9f13SBarry Smith PetscFunctionBegin; 10029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 100448a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1006273d9f13SBarry Smith } 1007273d9f13SBarry Smith 100866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1009d71ae5a4SJacob Faibussowitsch { 1010488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1011488007eeSBarry Smith 1012488007eeSBarry Smith PetscFunctionBegin; 10139566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1015488007eeSBarry Smith } 1016488007eeSBarry Smith 101766976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIDense(Mat mat) 1018d71ae5a4SJacob Faibussowitsch { 1019ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1020ba337c44SJed Brown 1021ba337c44SJed Brown PetscFunctionBegin; 10229566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 10233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1024ba337c44SJed Brown } 1025ba337c44SJed Brown 102666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIDense(Mat A) 1027d71ae5a4SJacob Faibussowitsch { 1028ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1029ba337c44SJed Brown 1030ba337c44SJed Brown PetscFunctionBegin; 10319566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 10323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1033ba337c44SJed Brown } 1034ba337c44SJed Brown 103566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1036d71ae5a4SJacob Faibussowitsch { 1037ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1038ba337c44SJed Brown 1039ba337c44SJed Brown PetscFunctionBegin; 10409566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 10413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1042ba337c44SJed Brown } 1043ba337c44SJed Brown 1044d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1045d71ae5a4SJacob Faibussowitsch { 1046637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 104749a6ff4bSBarry Smith 104849a6ff4bSBarry Smith PetscFunctionBegin; 104928b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 105028b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10519566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105349a6ff4bSBarry Smith } 105449a6ff4bSBarry Smith 1055857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 105652c5f739Sprj- 105766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1058d71ae5a4SJacob Faibussowitsch { 1059a873a8cdSSam Reynolds PetscInt i, m, n; 10600716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10610716a85fSBarry Smith PetscReal *work; 10620716a85fSBarry Smith 10630716a85fSBarry Smith PetscFunctionBegin; 10649566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1066857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10679566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1068857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10699566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1070a873a8cdSSam Reynolds } else { 10719566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1072a873a8cdSSam Reynolds } 1073857cbf51SRichard Tran Mills if (type == NORM_2) { 10740716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10750716a85fSBarry Smith } 1076857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10780716a85fSBarry Smith } else { 10791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10800716a85fSBarry Smith } 10819566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1082857cbf51SRichard Tran Mills if (type == NORM_2) { 1083a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1084857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1085a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10860716a85fSBarry Smith } 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10880716a85fSBarry Smith } 10890716a85fSBarry Smith 1090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1091d71ae5a4SJacob Faibussowitsch { 109273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 109373a71a0fSBarry Smith 109473a71a0fSBarry Smith PetscFunctionBegin; 10959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 10963faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 10973faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 10983faff063SStefano Zampini #endif 10993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110073a71a0fSBarry Smith } 110173a71a0fSBarry Smith 1102d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1103d71ae5a4SJacob Faibussowitsch { 11043b49f96aSBarry Smith PetscFunctionBegin; 11053b49f96aSBarry Smith *missing = PETSC_FALSE; 11063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11073b49f96aSBarry Smith } 11083b49f96aSBarry Smith 11094222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1110cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11116718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1112a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11136718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11146718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1115cc48ffa7SToby Isaac 111609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 111709dc0095SBarry Smith MatGetRow_MPIDense, 111809dc0095SBarry Smith MatRestoreRow_MPIDense, 111909dc0095SBarry Smith MatMult_MPIDense, 112097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11217c922b88SBarry Smith MatMultTranspose_MPIDense, 11227c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1123f4259b30SLisandro Dalcin NULL, 1124f4259b30SLisandro Dalcin NULL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin /* 10*/ NULL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin NULL, 113009dc0095SBarry Smith MatTranspose_MPIDense, 113197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11326e4ee0c6SHong Zhang MatEqual_MPIDense, 113309dc0095SBarry Smith MatGetDiagonal_MPIDense, 11345b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113509dc0095SBarry Smith MatNorm_MPIDense, 113697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113809dc0095SBarry Smith MatSetOption_MPIDense, 113909dc0095SBarry Smith MatZeroEntries_MPIDense, 1140d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1141f4259b30SLisandro Dalcin NULL, 1142f4259b30SLisandro Dalcin NULL, 1143f4259b30SLisandro Dalcin NULL, 1144f4259b30SLisandro Dalcin NULL, 11454994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1146f4259b30SLisandro Dalcin NULL, 1147f4259b30SLisandro Dalcin NULL, 1148c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1149f4259b30SLisandro Dalcin NULL, 1150d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1151f4259b30SLisandro Dalcin NULL, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin NULL, 1154f4259b30SLisandro Dalcin NULL, 1155d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11567dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1157f4259b30SLisandro Dalcin NULL, 115809dc0095SBarry Smith MatGetValues_MPIDense, 1159a76f77c3SStefano Zampini MatCopy_MPIDense, 1160f4259b30SLisandro Dalcin /* 44*/ NULL, 116109dc0095SBarry Smith MatScale_MPIDense, 11622f605a99SJose E. Roman MatShift_MPIDense, 1163f4259b30SLisandro Dalcin NULL, 1164f4259b30SLisandro Dalcin NULL, 116573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1166f4259b30SLisandro Dalcin NULL, 1167f4259b30SLisandro Dalcin NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin /* 54*/ NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin NULL, 1174f4259b30SLisandro Dalcin NULL, 11757dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1176b9b97703SBarry Smith MatDestroy_MPIDense, 1177b9b97703SBarry Smith MatView_MPIDense, 1178f4259b30SLisandro Dalcin NULL, 1179f4259b30SLisandro Dalcin NULL, 1180f4259b30SLisandro Dalcin /* 64*/ NULL, 1181f4259b30SLisandro Dalcin NULL, 1182f4259b30SLisandro Dalcin NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin NULL, 1185f4259b30SLisandro Dalcin /* 69*/ NULL, 1186f4259b30SLisandro Dalcin NULL, 1187f4259b30SLisandro Dalcin NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin NULL, 1190f4259b30SLisandro Dalcin /* 74*/ NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin NULL, 1195f4259b30SLisandro Dalcin /* 79*/ NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin NULL, 1198f4259b30SLisandro Dalcin NULL, 11995bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1200f4259b30SLisandro Dalcin NULL, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin NULL, 1205f4259b30SLisandro Dalcin /* 89*/ NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin /* 94*/ NULL, 1211f4259b30SLisandro Dalcin NULL, 12126718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1213cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1214f4259b30SLisandro Dalcin NULL, 12154222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1216f4259b30SLisandro Dalcin NULL, 1217f4259b30SLisandro Dalcin NULL, 1218ba337c44SJed Brown MatConjugate_MPIDense, 1219f4259b30SLisandro Dalcin NULL, 1220f4259b30SLisandro Dalcin /*104*/ NULL, 1221ba337c44SJed Brown MatRealPart_MPIDense, 1222ba337c44SJed Brown MatImaginaryPart_MPIDense, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin NULL, 1225f4259b30SLisandro Dalcin /*109*/ NULL, 1226f4259b30SLisandro Dalcin NULL, 1227f4259b30SLisandro Dalcin NULL, 122849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12293b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1230f4259b30SLisandro Dalcin /*114*/ NULL, 1231f4259b30SLisandro Dalcin NULL, 1232f4259b30SLisandro Dalcin NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin /*119*/ NULL, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240f4259b30SLisandro Dalcin /*124*/ NULL, 1241a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1242f4259b30SLisandro Dalcin NULL, 1243f4259b30SLisandro Dalcin NULL, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin /*129*/ NULL, 1246f4259b30SLisandro Dalcin NULL, 12476718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1248cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1249f4259b30SLisandro Dalcin NULL, 1250f4259b30SLisandro Dalcin /*134*/ NULL, 1251f4259b30SLisandro Dalcin NULL, 1252f4259b30SLisandro Dalcin NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin NULL, 1255f4259b30SLisandro Dalcin /*139*/ NULL, 1256f4259b30SLisandro Dalcin NULL, 1257f4259b30SLisandro Dalcin NULL, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 12604222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1261f4259b30SLisandro Dalcin /*145*/ NULL, 1262f4259b30SLisandro Dalcin NULL, 126399a7f59eSMark Adams NULL, 126499a7f59eSMark Adams NULL, 12657fb60732SBarry Smith NULL, 1266dec0b466SHong Zhang /*150*/ NULL, 1267dec0b466SHong Zhang NULL}; 12688965ea79SLois Curfman McInnes 126966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1270d71ae5a4SJacob Faibussowitsch { 1271637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 127247d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1273a23d5eceSKris Buschelman 1274a23d5eceSKris Buschelman PetscFunctionBegin; 127528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 12779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1278637a0070SStefano Zampini if (!a->A) { 12799566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 12809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1281637a0070SStefano Zampini } 128247d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 128347d993e7Ssuyashtn PetscBool iscuda; 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 128547d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 128647d993e7Ssuyashtn #endif 128747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 128847d993e7Ssuyashtn PetscBool iship; 128947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 129047d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 129147d993e7Ssuyashtn #endif 129247d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 12939566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 129447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 12953faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 12963faff063SStefano Zampini #endif 1297637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 12986f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 12993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1300a23d5eceSKris Buschelman } 1301a23d5eceSKris Buschelman 1302d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1303d71ae5a4SJacob Faibussowitsch { 13044e29119aSPierre Jolivet Mat B, C; 13054e29119aSPierre Jolivet 13064e29119aSPierre Jolivet PetscFunctionBegin; 13079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13089566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13104e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13114e29119aSPierre Jolivet C = *newmat; 13124e29119aSPierre Jolivet } else C = NULL; 13139566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13154e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13169566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13174e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13194e29119aSPierre Jolivet } 13204e29119aSPierre Jolivet 132166976f2fSJacob Faibussowitsch static PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1322d71ae5a4SJacob Faibussowitsch { 13234e29119aSPierre Jolivet Mat B, C; 13244e29119aSPierre Jolivet 13254e29119aSPierre Jolivet PetscFunctionBegin; 13269566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 13279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 13284e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13294e29119aSPierre Jolivet C = *newmat; 13304e29119aSPierre Jolivet } else C = NULL; 13319566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13334e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13349566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13354e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13374e29119aSPierre Jolivet } 13384e29119aSPierre Jolivet 133965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1340d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1341d71ae5a4SJacob Faibussowitsch { 1342*f709e8d7SPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 13438ea901baSHong Zhang Mat mat_elemental; 134432d7a744SHong Zhang PetscScalar *v; 1345*f709e8d7SPierre Jolivet PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols, lda; 13468ea901baSHong Zhang 13478baccfbdSHong Zhang PetscFunctionBegin; 1348378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1349378336b6SHong Zhang mat_elemental = *newmat; 13509566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1351378336b6SHong Zhang } else { 13529566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 13539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 13549566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 13559566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 13569566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1357378336b6SHong Zhang } 1358378336b6SHong Zhang 13599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 136032d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 136132d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 13628ea901baSHong Zhang 1363637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 13649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1365*f709e8d7SPierre Jolivet PetscCall(MatDenseGetLDA(a->A, &lda)); 1366*f709e8d7SPierre Jolivet if (lda == m) PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 1367*f709e8d7SPierre Jolivet else { 1368*f709e8d7SPierre Jolivet for (i = 0; i < N; i++) PetscCall(MatSetValues(mat_elemental, m, rows, 1, &i, v + lda * i, ADD_VALUES)); 1369*f709e8d7SPierre Jolivet } 13709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 13719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 13729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 13739566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 13748ea901baSHong Zhang 1375511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 13769566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 13778ea901baSHong Zhang } else { 13788ea901baSHong Zhang *newmat = mat_elemental; 13798ea901baSHong Zhang } 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13818baccfbdSHong Zhang } 138265b80a83SHong Zhang #endif 13838baccfbdSHong Zhang 1384d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1385d71ae5a4SJacob Faibussowitsch { 138686aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 138786aefd0dSHong Zhang 138886aefd0dSHong Zhang PetscFunctionBegin; 13899566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139186aefd0dSHong Zhang } 139286aefd0dSHong Zhang 1393d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1394d71ae5a4SJacob Faibussowitsch { 139586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 139686aefd0dSHong Zhang 139786aefd0dSHong Zhang PetscFunctionBegin; 13989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 13993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140086aefd0dSHong Zhang } 140186aefd0dSHong Zhang 1402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1403d71ae5a4SJacob Faibussowitsch { 140494e2cb23SJakub Kruzik Mat_MPIDense *mat; 140594e2cb23SJakub Kruzik PetscInt m, nloc, N; 140694e2cb23SJakub Kruzik 140794e2cb23SJakub Kruzik PetscFunctionBegin; 14089566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14099566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 141094e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 141194e2cb23SJakub Kruzik PetscInt sum; 141294e2cb23SJakub Kruzik 141348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 141494e2cb23SJakub Kruzik /* Check sum(n) = N */ 14151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 141608401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 141794e2cb23SJakub Kruzik 14189566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 14199566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 142094e2cb23SJakub Kruzik } 142194e2cb23SJakub Kruzik 142294e2cb23SJakub Kruzik /* numeric phase */ 142394e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 14249566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 14253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142694e2cb23SJakub Kruzik } 142794e2cb23SJakub Kruzik 1428d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1429d71ae5a4SJacob Faibussowitsch { 14306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14316947451fSStefano Zampini PetscInt lda; 14326947451fSStefano Zampini 14336947451fSStefano Zampini PetscFunctionBegin; 143428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 143528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1436d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14376947451fSStefano Zampini a->vecinuse = col + 1; 14389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14399566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 14409566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14416947451fSStefano Zampini *v = a->cvec; 14423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14436947451fSStefano Zampini } 14446947451fSStefano Zampini 1445d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1446d71ae5a4SJacob Faibussowitsch { 14476947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14486947451fSStefano Zampini 14496947451fSStefano Zampini PetscFunctionBegin; 145028b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 145128b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 14526947451fSStefano Zampini a->vecinuse = 0; 14539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 14549566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1455742765d3SMatthew Knepley if (v) *v = NULL; 14563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14576947451fSStefano Zampini } 14586947451fSStefano Zampini 1459d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1460d71ae5a4SJacob Faibussowitsch { 14616947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14626947451fSStefano Zampini PetscInt lda; 14636947451fSStefano Zampini 14646947451fSStefano Zampini PetscFunctionBegin; 146528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 146628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1467d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14686947451fSStefano Zampini a->vecinuse = col + 1; 14699566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14709566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 14719566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14729566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 14736947451fSStefano Zampini *v = a->cvec; 14743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14756947451fSStefano Zampini } 14766947451fSStefano Zampini 1477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1478d71ae5a4SJacob Faibussowitsch { 14796947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14806947451fSStefano Zampini 14816947451fSStefano Zampini PetscFunctionBegin; 14825f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 14835f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 14846947451fSStefano Zampini a->vecinuse = 0; 14859566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 14869566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 14879566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1488742765d3SMatthew Knepley if (v) *v = NULL; 14893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14906947451fSStefano Zampini } 14916947451fSStefano Zampini 1492d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1493d71ae5a4SJacob Faibussowitsch { 14946947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14956947451fSStefano Zampini PetscInt lda; 14966947451fSStefano Zampini 14976947451fSStefano Zampini PetscFunctionBegin; 14985f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 14995f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1500d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15016947451fSStefano Zampini a->vecinuse = col + 1; 15029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15049566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 15056947451fSStefano Zampini *v = a->cvec; 15063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15076947451fSStefano Zampini } 15086947451fSStefano Zampini 1509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1510d71ae5a4SJacob Faibussowitsch { 15116947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15126947451fSStefano Zampini 15136947451fSStefano Zampini PetscFunctionBegin; 15145f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15155f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15166947451fSStefano Zampini a->vecinuse = 0; 15179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15189566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1519742765d3SMatthew Knepley if (v) *v = NULL; 15203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15216947451fSStefano Zampini } 15226947451fSStefano Zampini 152366976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1524d71ae5a4SJacob Faibussowitsch { 15255ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1526616b8fbbSStefano Zampini Mat_MPIDense *c; 1527616b8fbbSStefano Zampini MPI_Comm comm; 1528a2748737SPierre Jolivet PetscInt pbegin, pend; 15295ea7661aSPierre Jolivet 15305ea7661aSPierre Jolivet PetscFunctionBegin; 15319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 15325f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15335f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1534a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1535a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 15365ea7661aSPierre Jolivet if (!a->cmat) { 15379566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 15389566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1539a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1540a2748737SPierre Jolivet else { 1541a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1542a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1543a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1544a2748737SPierre Jolivet } 15459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1547a2748737SPierre Jolivet } else { 1548a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1549a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1550a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1551a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1552a2748737SPierre Jolivet } 1553a2748737SPierre Jolivet if (!same) { 1554a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1555a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1556a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1557a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1558a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1559a2748737SPierre Jolivet } 1560a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 15629566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 15639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 15655ea7661aSPierre Jolivet } 1566a2748737SPierre Jolivet } 1567616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15685f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1569a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 15703faff063SStefano Zampini 1571616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1572616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 15733faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15743faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 15753faff063SStefano Zampini #endif 15765ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 15775ea7661aSPierre Jolivet *v = a->cmat; 15783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15795ea7661aSPierre Jolivet } 15805ea7661aSPierre Jolivet 158166976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1582d71ae5a4SJacob Faibussowitsch { 15835ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1584616b8fbbSStefano Zampini Mat_MPIDense *c; 15855ea7661aSPierre Jolivet 15865ea7661aSPierre Jolivet PetscFunctionBegin; 15875f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 15885f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 15895f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 15905ea7661aSPierre Jolivet a->matinuse = 0; 1591616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1593742765d3SMatthew Knepley if (v) *v = NULL; 15943faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15953faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 15963faff063SStefano Zampini #endif 15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15985ea7661aSPierre Jolivet } 15995ea7661aSPierre Jolivet 1600002bc6daSRichard Tran Mills /*MC 1601002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1602002bc6daSRichard Tran Mills 16032ef1f0ffSBarry Smith Options Database Key: 160411a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1605002bc6daSRichard Tran Mills 1606002bc6daSRichard Tran Mills Level: beginner 1607002bc6daSRichard Tran Mills 16081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1609002bc6daSRichard Tran Mills M*/ 16104742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1611d71ae5a4SJacob Faibussowitsch { 1612273d9f13SBarry Smith Mat_MPIDense *a; 1613273d9f13SBarry Smith 1614273d9f13SBarry Smith PetscFunctionBegin; 16154dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1616b0a32e0cSBarry Smith mat->data = (void *)a; 1617aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1618273d9f13SBarry Smith 1619273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1620273d9f13SBarry Smith 1621273d9f13SBarry Smith /* build cache for off array entries formed */ 1622273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16232205254eSKarl Rupp 16249566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1625273d9f13SBarry Smith 1626273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1627f4259b30SLisandro Dalcin a->lvec = NULL; 1628f4259b30SLisandro Dalcin a->Mvctx = NULL; 1629273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1630273d9f13SBarry Smith 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 16479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 16499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 16519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 16528baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 16548baccfbdSHong Zhang #endif 1655d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1657d24d4204SJose E. Roman #endif 1658637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1660637a0070SStefano Zampini #endif 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16646718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16676718818eSStefano Zampini #endif 166847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 166947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 167047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 167147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 167247d993e7Ssuyashtn #endif 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 16763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1677273d9f13SBarry Smith } 1678273d9f13SBarry Smith 1679209238afSKris Buschelman /*MC 1680002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1681209238afSKris Buschelman 168211a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 168311a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1684209238afSKris Buschelman 16852ef1f0ffSBarry Smith Options Database Key: 168611a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1687209238afSKris Buschelman 1688209238afSKris Buschelman Level: beginner 1689209238afSKris Buschelman 16901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 16916947451fSStefano Zampini M*/ 16926947451fSStefano Zampini 1693273d9f13SBarry Smith /*@C 1694273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1695273d9f13SBarry Smith 16968f490ea3SStefano Zampini Collective 1697273d9f13SBarry Smith 1698273d9f13SBarry Smith Input Parameters: 1699fe59aa6dSJacob Faibussowitsch + B - the matrix 17002ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1701273d9f13SBarry Smith to control all matrix memory allocation. 1702273d9f13SBarry Smith 17032ef1f0ffSBarry Smith Level: intermediate 17042ef1f0ffSBarry Smith 1705273d9f13SBarry Smith Notes: 17062ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1707273d9f13SBarry Smith storage by columns. 1708273d9f13SBarry Smith 1709273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1710273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 17112ef1f0ffSBarry Smith set `data` to `NULL`. 1712273d9f13SBarry Smith 17131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1714273d9f13SBarry Smith @*/ 1715d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1716d71ae5a4SJacob Faibussowitsch { 1717273d9f13SBarry Smith PetscFunctionBegin; 1718d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1719cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 17203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1721273d9f13SBarry Smith } 1722273d9f13SBarry Smith 1723d3042a70SBarry Smith /*@ 172411a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1725d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1726d3042a70SBarry Smith into a matrix 1727d3042a70SBarry Smith 1728d3042a70SBarry Smith Not Collective 1729d3042a70SBarry Smith 1730d3042a70SBarry Smith Input Parameters: 1731d3042a70SBarry Smith + mat - the matrix 1732d3042a70SBarry Smith - array - the array in column major order 1733d3042a70SBarry Smith 17342ef1f0ffSBarry Smith Level: developer 17352ef1f0ffSBarry Smith 173611a5261eSBarry Smith Note: 173711a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1738d3042a70SBarry Smith freed when the matrix is destroyed. 1739d3042a70SBarry Smith 17401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 174111a5261eSBarry Smith `MatDenseReplaceArray()` 1742d3042a70SBarry Smith @*/ 1743d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1744d71ae5a4SJacob Faibussowitsch { 1745d3042a70SBarry Smith PetscFunctionBegin; 1746d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1747cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 174947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1750637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1751637a0070SStefano Zampini #endif 17523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1753d3042a70SBarry Smith } 1754d3042a70SBarry Smith 1755d3042a70SBarry Smith /*@ 175611a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1757d3042a70SBarry Smith 1758d3042a70SBarry Smith Not Collective 1759d3042a70SBarry Smith 17602fe279fdSBarry Smith Input Parameter: 1761d3042a70SBarry Smith . mat - the matrix 1762d3042a70SBarry Smith 17632ef1f0ffSBarry Smith Level: developer 17642ef1f0ffSBarry Smith 176511a5261eSBarry Smith Note: 176611a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1767d3042a70SBarry Smith 17681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1769d3042a70SBarry Smith @*/ 1770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1771d71ae5a4SJacob Faibussowitsch { 1772d3042a70SBarry Smith PetscFunctionBegin; 1773d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1774cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 17759566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 17763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1777d3042a70SBarry Smith } 1778d3042a70SBarry Smith 1779d5ea218eSStefano Zampini /*@ 1780d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1781d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1782d5ea218eSStefano Zampini into a matrix 1783d5ea218eSStefano Zampini 1784d5ea218eSStefano Zampini Not Collective 1785d5ea218eSStefano Zampini 1786d5ea218eSStefano Zampini Input Parameters: 1787d5ea218eSStefano Zampini + mat - the matrix 1788d5ea218eSStefano Zampini - array - the array in column major order 1789d5ea218eSStefano Zampini 17902ef1f0ffSBarry Smith Level: developer 17912ef1f0ffSBarry Smith 179211a5261eSBarry Smith Note: 179311a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1794d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1795d5ea218eSStefano Zampini 17961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1797d5ea218eSStefano Zampini @*/ 1798d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1799d71ae5a4SJacob Faibussowitsch { 1800d5ea218eSStefano Zampini PetscFunctionBegin; 1801d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1802cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18039566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 180447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1805d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1806d5ea218eSStefano Zampini #endif 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1808d5ea218eSStefano Zampini } 1809d5ea218eSStefano Zampini 1810637a0070SStefano Zampini /*@C 181111a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 18128965ea79SLois Curfman McInnes 1813d083f849SBarry Smith Collective 1814db81eaa0SLois Curfman McInnes 18158965ea79SLois Curfman McInnes Input Parameters: 1816db81eaa0SLois Curfman McInnes + comm - MPI communicator 18172ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 18182ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 18192ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 18202ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 18212ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1822dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18238965ea79SLois Curfman McInnes 18248965ea79SLois Curfman McInnes Output Parameter: 1825477f1c0bSLois Curfman McInnes . A - the matrix 18268965ea79SLois Curfman McInnes 18272ef1f0ffSBarry Smith Level: intermediate 18282ef1f0ffSBarry Smith 1829b259b22eSLois Curfman McInnes Notes: 18302ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 183139ddd567SLois Curfman McInnes storage by columns. 183211a5261eSBarry Smith 183311a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1834002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 18358965ea79SLois Curfman McInnes 183618f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 183718f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18382ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 183918f449edSLois Curfman McInnes 18408965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18418965ea79SLois Curfman McInnes (possibly both). 18428965ea79SLois Curfman McInnes 18431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 18448965ea79SLois Curfman McInnes @*/ 1845d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1846d71ae5a4SJacob Faibussowitsch { 18473a40ed3dSBarry Smith PetscFunctionBegin; 18489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18506f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 18519566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 18526f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 18533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18548965ea79SLois Curfman McInnes } 18558965ea79SLois Curfman McInnes 1856d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1857d71ae5a4SJacob Faibussowitsch { 18588965ea79SLois Curfman McInnes Mat mat; 18593501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 18608965ea79SLois Curfman McInnes 18613a40ed3dSBarry Smith PetscFunctionBegin; 1862f4259b30SLisandro Dalcin *newmat = NULL; 18639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 18649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 18659566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1866834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 18675aa7edbeSHong Zhang 1868d5f3da31SBarry Smith mat->factortype = A->factortype; 1869c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1870273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18718965ea79SLois Curfman McInnes 1872e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 18733782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1874e04c1aa4SHong Zhang 18759566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 18769566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 18778965ea79SLois Curfman McInnes 18789566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 187901b82886SBarry Smith 18808965ea79SLois Curfman McInnes *newmat = mat; 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18828965ea79SLois Curfman McInnes } 18838965ea79SLois Curfman McInnes 188466976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1885d71ae5a4SJacob Faibussowitsch { 188687d5ce66SSatish Balay PetscBool isbinary; 188787d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 188887d5ce66SSatish Balay PetscBool ishdf5; 188987d5ce66SSatish Balay #endif 1890eb91f321SVaclav Hapla 1891eb91f321SVaclav Hapla PetscFunctionBegin; 1892eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1893eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1894eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 18959566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 189787d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 18989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 189987d5ce66SSatish Balay #endif 1900eb91f321SVaclav Hapla if (isbinary) { 19019566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1902eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 190387d5ce66SSatish Balay } else if (ishdf5) { 19049566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1905eb91f321SVaclav Hapla #endif 190698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1908eb91f321SVaclav Hapla } 1909eb91f321SVaclav Hapla 1910d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 1911d71ae5a4SJacob Faibussowitsch { 19126e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 19136e4ee0c6SHong Zhang Mat a, b; 191490ace30eSBarry Smith 19156e4ee0c6SHong Zhang PetscFunctionBegin; 19166e4ee0c6SHong Zhang a = matA->A; 19176e4ee0c6SHong Zhang b = matB->A; 19182cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 19192cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 19203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19216e4ee0c6SHong Zhang } 192290ace30eSBarry Smith 192366976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 1924d71ae5a4SJacob Faibussowitsch { 19256718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 1926baa3c1c6SHong Zhang 1927baa3c1c6SHong Zhang PetscFunctionBegin; 19289566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 19299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 19309566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 19313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1932baa3c1c6SHong Zhang } 1933baa3c1c6SHong Zhang 193466976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 1935d71ae5a4SJacob Faibussowitsch { 19366718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 1937cc48ffa7SToby Isaac 1938cc48ffa7SToby Isaac PetscFunctionBegin; 19399566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 19409566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 19419566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 19423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1943cc48ffa7SToby Isaac } 1944cc48ffa7SToby Isaac 1945d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1946d71ae5a4SJacob Faibussowitsch { 1947baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 19486718818eSStefano Zampini Mat_TransMatMultDense *atb; 1949cb20be35SHong Zhang MPI_Comm comm; 19506718818eSStefano Zampini PetscMPIInt size, *recvcounts; 19516718818eSStefano Zampini PetscScalar *carray, *sendbuf; 1952637a0070SStefano Zampini const PetscScalar *atbarray; 1953a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 1954e68c0b26SHong Zhang const PetscInt *ranges; 1955cb20be35SHong Zhang 1956cb20be35SHong Zhang PetscFunctionBegin; 19576718818eSStefano Zampini MatCheckProduct(C, 3); 19585f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 19596718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 19606718818eSStefano Zampini recvcounts = atb->recvcounts; 19616718818eSStefano Zampini sendbuf = atb->sendbuf; 19626718818eSStefano Zampini 19639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 19649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1965e68c0b26SHong Zhang 1966c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 19679566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 1968cb20be35SHong Zhang 19699566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 1970cb20be35SHong Zhang 1971660d5466SHong Zhang /* arrange atbarray into sendbuf */ 19729566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 19739566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 1974637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 1975baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 1976a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 1977cb20be35SHong Zhang } 1978cb20be35SHong Zhang } 19799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 1980637a0070SStefano Zampini 1981c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 19829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 19839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 19849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 19859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 19869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 19873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1988cb20be35SHong Zhang } 1989cb20be35SHong Zhang 1990d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1991d71ae5a4SJacob Faibussowitsch { 1992cb20be35SHong Zhang MPI_Comm comm; 1993baa3c1c6SHong Zhang PetscMPIInt size; 1994660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 1995baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 199647d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 19970acaeb71SStefano Zampini PetscInt i; 19980acaeb71SStefano Zampini const PetscInt *ranges; 1999cb20be35SHong Zhang 2000cb20be35SHong Zhang PetscFunctionBegin; 20018f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 20025f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2004cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 200598921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2006cb20be35SHong Zhang } 2007cb20be35SHong Zhang 20084222ddf1SHong Zhang /* create matrix product C */ 20099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 201047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 201247d993e7Ssuyashtn #endif 201347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 201447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 201547d993e7Ssuyashtn #endif 201648a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 20179566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2018baa3c1c6SHong Zhang 20194222ddf1SHong Zhang /* create data structure for reuse C */ 20209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20219566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 20224222ddf1SHong Zhang cM = C->rmap->N; 20239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 20249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 20250acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2026baa3c1c6SHong Zhang 20276718818eSStefano Zampini C->product->data = atb; 20286718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 20293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2030cb20be35SHong Zhang } 2031cb20be35SHong Zhang 2032d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2033d71ae5a4SJacob Faibussowitsch { 2034cc48ffa7SToby Isaac MPI_Comm comm; 2035cc48ffa7SToby Isaac PetscMPIInt i, size; 2036cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2037cc48ffa7SToby Isaac PetscMPIInt tag; 20384222ddf1SHong Zhang PetscInt alg; 2039cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 20404222ddf1SHong Zhang Mat_Product *product = C->product; 20414222ddf1SHong Zhang PetscBool flg; 2042cc48ffa7SToby Isaac 2043cc48ffa7SToby Isaac PetscFunctionBegin; 20446718818eSStefano Zampini MatCheckProduct(C, 4); 20455f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20464222ddf1SHong Zhang /* check local size of A and B */ 20475f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2048cc48ffa7SToby Isaac 20499566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2050637a0070SStefano Zampini alg = flg ? 0 : 1; 2051cc48ffa7SToby Isaac 20524222ddf1SHong Zhang /* setup matrix product C */ 20539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 20549566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 20559566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 20569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 20574222ddf1SHong Zhang 20584222ddf1SHong Zhang /* create data structure for reuse C */ 20599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20619566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2062cc48ffa7SToby Isaac abt->tag = tag; 2063faa55883SToby Isaac abt->alg = alg; 2064faa55883SToby Isaac switch (alg) { 20654222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2066cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2067cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 20689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2069faa55883SToby Isaac break; 20704222ddf1SHong Zhang default: /* alg: "allgatherv" */ 20719566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 20729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2073faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2074faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2075faa55883SToby Isaac break; 2076faa55883SToby Isaac } 2077cc48ffa7SToby Isaac 20786718818eSStefano Zampini C->product->data = abt; 20796718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 20804222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 20813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2082cc48ffa7SToby Isaac } 2083cc48ffa7SToby Isaac 2084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2085d71ae5a4SJacob Faibussowitsch { 2086cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20876718818eSStefano Zampini Mat_MatTransMultDense *abt; 2088cc48ffa7SToby Isaac MPI_Comm comm; 2089cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2090f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2091cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2092cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2093637a0070SStefano Zampini const PetscScalar *av, *bv; 209423fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2095cc48ffa7SToby Isaac MPI_Request reqs[2]; 2096cc48ffa7SToby Isaac const PetscInt *ranges; 2097cc48ffa7SToby Isaac 2098cc48ffa7SToby Isaac PetscFunctionBegin; 20996718818eSStefano Zampini MatCheckProduct(C, 3); 21005f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21016718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21059566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21089566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21109566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 21119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 21129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 21149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2115cc48ffa7SToby Isaac bn = B->rmap->n; 2116637a0070SStefano Zampini if (blda == bn) { 2117637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2118cc48ffa7SToby Isaac } else { 2119cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2120cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2121ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2122cc48ffa7SToby Isaac } 2123cc48ffa7SToby Isaac } 2124cc48ffa7SToby Isaac if (size > 1) { 2125cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2126cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2127cc48ffa7SToby Isaac } else { 2128cc48ffa7SToby Isaac sendto = recvfrom = 0; 2129cc48ffa7SToby Isaac } 21309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2132cc48ffa7SToby Isaac recvisfrom = rank; 2133cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2134cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2135cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2136cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2137cc48ffa7SToby Isaac 2138cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2139cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2140cc48ffa7SToby Isaac sendsiz = cK * bn; 2141cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2142cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 21439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 21449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2145cc48ffa7SToby Isaac } 2146cc48ffa7SToby Isaac 2147cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 21489566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2149792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2150cc48ffa7SToby Isaac 2151cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2152cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 21539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2154cc48ffa7SToby Isaac } 2155cc48ffa7SToby Isaac bn = nextbn; 2156cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2157cc48ffa7SToby Isaac sendbuf = recvbuf; 2158cc48ffa7SToby Isaac } 21599566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 21609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 21629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 21639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 21643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2165cc48ffa7SToby Isaac } 2166cc48ffa7SToby Isaac 2167d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2168d71ae5a4SJacob Faibussowitsch { 2169faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21706718818eSStefano Zampini Mat_MatTransMultDense *abt; 2171faa55883SToby Isaac MPI_Comm comm; 2172637a0070SStefano Zampini PetscMPIInt size; 2173637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2174637a0070SStefano Zampini const PetscScalar *av, *bv; 2175637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2176faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2177637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2178faa55883SToby Isaac 2179faa55883SToby Isaac PetscFunctionBegin; 21806718818eSStefano Zampini MatCheckProduct(C, 3); 21815f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21826718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 21849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21889566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 21919566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21929566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2193faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2194faa55883SToby Isaac bn = B->rmap->n; 2195faa55883SToby Isaac sendbuf = abt->buf[0]; 2196faa55883SToby Isaac recvbuf = abt->buf[1]; 2197faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2198ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2199faa55883SToby Isaac } 22009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 22029566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22039566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 22049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2205792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 22099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2212faa55883SToby Isaac } 2213faa55883SToby Isaac 2214d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2215d71ae5a4SJacob Faibussowitsch { 22166718818eSStefano Zampini Mat_MatTransMultDense *abt; 2217faa55883SToby Isaac 2218faa55883SToby Isaac PetscFunctionBegin; 22196718818eSStefano Zampini MatCheckProduct(C, 3); 22205f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22216718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2222faa55883SToby Isaac switch (abt->alg) { 2223d71ae5a4SJacob Faibussowitsch case 1: 2224d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2225d71ae5a4SJacob Faibussowitsch break; 2226d71ae5a4SJacob Faibussowitsch default: 2227d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2228d71ae5a4SJacob Faibussowitsch break; 2229faa55883SToby Isaac } 22303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2231faa55883SToby Isaac } 2232faa55883SToby Isaac 223366976f2fSJacob Faibussowitsch #if defined(PETSC_HAVE_ELEMENTAL) 223466976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2235d71ae5a4SJacob Faibussowitsch { 22366718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2237320f2790SHong Zhang 2238320f2790SHong Zhang PetscFunctionBegin; 22399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 22409566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 22419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 22429566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 22433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2244320f2790SHong Zhang } 2245320f2790SHong Zhang 2246d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2247d71ae5a4SJacob Faibussowitsch { 22486718818eSStefano Zampini Mat_MatMultDense *ab; 2249320f2790SHong Zhang 2250320f2790SHong Zhang PetscFunctionBegin; 22516718818eSStefano Zampini MatCheckProduct(C, 3); 22525f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 22536718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 22549566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 22559566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 22569566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 22579566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 22583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2259320f2790SHong Zhang } 2260320f2790SHong Zhang 2261d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2262d71ae5a4SJacob Faibussowitsch { 2263320f2790SHong Zhang Mat Ae, Be, Ce; 2264320f2790SHong Zhang Mat_MatMultDense *ab; 2265320f2790SHong Zhang 2266320f2790SHong Zhang PetscFunctionBegin; 22676718818eSStefano Zampini MatCheckProduct(C, 4); 22685f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 22694222ddf1SHong Zhang /* check local size of A and B */ 2270320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 227198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2272320f2790SHong Zhang } 2273320f2790SHong Zhang 22744222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 22759566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 22769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 22779566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 22789566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 22799566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2280320f2790SHong Zhang 22819566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 22829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 22839566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 22849566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 22859566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2286320f2790SHong Zhang 22874222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 22889566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 22899566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 22904222ddf1SHong Zhang 22914222ddf1SHong Zhang /* setup C */ 22929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 22939566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 22949566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2295320f2790SHong Zhang 2296320f2790SHong Zhang /* create data structure for reuse Cdense */ 22979566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2298320f2790SHong Zhang ab->Ae = Ae; 2299320f2790SHong Zhang ab->Be = Be; 2300320f2790SHong Zhang ab->Ce = Ce; 23016718818eSStefano Zampini 23026718818eSStefano Zampini C->product->data = ab; 23036718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 23044222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 23053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2306320f2790SHong Zhang } 23074222ddf1SHong Zhang #endif 23082ef1f0ffSBarry Smith 23094222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2310d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2311d71ae5a4SJacob Faibussowitsch { 2312320f2790SHong Zhang PetscFunctionBegin; 23134222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23144222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 23153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2316320f2790SHong Zhang } 23175242a7b1SHong Zhang #endif 231886aefd0dSHong Zhang 2319d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2320d71ae5a4SJacob Faibussowitsch { 23214222ddf1SHong Zhang Mat_Product *product = C->product; 23224222ddf1SHong Zhang Mat A = product->A, B = product->B; 23234222ddf1SHong Zhang 23244222ddf1SHong Zhang PetscFunctionBegin; 23254222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 232698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 23276718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 23286718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 23293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23304222ddf1SHong Zhang } 23314222ddf1SHong Zhang 2332d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2333d71ae5a4SJacob Faibussowitsch { 23344222ddf1SHong Zhang Mat_Product *product = C->product; 23354222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 23364222ddf1SHong Zhang PetscInt alg, nalg = 2; 23374222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23384222ddf1SHong Zhang 23394222ddf1SHong Zhang PetscFunctionBegin; 23404222ddf1SHong Zhang /* Set default algorithm */ 23414222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 23429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 234348a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23444222ddf1SHong Zhang 23454222ddf1SHong Zhang /* Get runtime option */ 23464222ddf1SHong Zhang if (product->api_user) { 2347d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 23489566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2349d0609cedSBarry Smith PetscOptionsEnd(); 23504222ddf1SHong Zhang } else { 2351d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 23529566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2353d0609cedSBarry Smith PetscOptionsEnd(); 23544222ddf1SHong Zhang } 235548a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23564222ddf1SHong Zhang 23574222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 23584222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 23593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23604222ddf1SHong Zhang } 23614222ddf1SHong Zhang 2362d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2363d71ae5a4SJacob Faibussowitsch { 23644222ddf1SHong Zhang Mat_Product *product = C->product; 23654222ddf1SHong Zhang 23664222ddf1SHong Zhang PetscFunctionBegin; 23674222ddf1SHong Zhang switch (product->type) { 23684222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2369d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2370d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2371d71ae5a4SJacob Faibussowitsch break; 23724222ddf1SHong Zhang #endif 2373d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2374d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2375d71ae5a4SJacob Faibussowitsch break; 2376d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2377d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2378d71ae5a4SJacob Faibussowitsch break; 2379d71ae5a4SJacob Faibussowitsch default: 2380d71ae5a4SJacob Faibussowitsch break; 23814222ddf1SHong Zhang } 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23834222ddf1SHong Zhang } 2384