1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6086718818eSStefano Zampini #endif 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 619*f8103e6bSStefano Zampini 620*f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6213a40ed3dSBarry Smith PetscFunctionReturn(0); 6228965ea79SLois Curfman McInnes } 62339ddd567SLois Curfman McInnes 62452c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 62552c5f739Sprj- 6269804daf3SBarry Smith #include <petscdraw.h> 6276849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6288965ea79SLois Curfman McInnes { 62939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 630616b8fbbSStefano Zampini PetscMPIInt rank; 63119fd82e9SBarry Smith PetscViewerType vtype; 632ace3abfcSBarry Smith PetscBool iascii,isdraw; 633b0a32e0cSBarry Smith PetscViewer sviewer; 634f3ef73ceSBarry Smith PetscViewerFormat format; 6358965ea79SLois Curfman McInnes 6363a40ed3dSBarry Smith PetscFunctionBegin; 6379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 64032077d6dSBarry Smith if (iascii) { 6419566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6429566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 643456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6444e220ebcSLois Curfman McInnes MatInfo info; 6459566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6489566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6506f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6513a40ed3dSBarry Smith PetscFunctionReturn(0); 652fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6533a40ed3dSBarry Smith PetscFunctionReturn(0); 6548965ea79SLois Curfman McInnes } 655f1af5d2fSBarry Smith } else if (isdraw) { 656b0a32e0cSBarry Smith PetscDraw draw; 657ace3abfcSBarry Smith PetscBool isnull; 658f1af5d2fSBarry Smith 6599566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6609566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 661f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 662f1af5d2fSBarry Smith } 66377ed5343SBarry Smith 6647da1fb6eSBarry Smith { 6658965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6668965ea79SLois Curfman McInnes Mat A; 667d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 668ba8c8a56SBarry Smith PetscInt *cols; 669ba8c8a56SBarry Smith PetscScalar *vals; 6708965ea79SLois Curfman McInnes 6719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 672dd400576SPatrick Sanan if (rank == 0) { 6739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6743a40ed3dSBarry Smith } else { 6759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6768965ea79SLois Curfman McInnes } 6777adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6789566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6799566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6809566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6818965ea79SLois Curfman McInnes 68239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 68339ddd567SLois Curfman McInnes but it's quick for now */ 68451022da4SBarry Smith A->insertmode = INSERT_VALUES; 6852205254eSKarl Rupp 6862205254eSKarl Rupp row = mat->rmap->rstart; 6872205254eSKarl Rupp m = mdn->A->rmap->n; 6888965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6899566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6909566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6919566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 69239ddd567SLois Curfman McInnes row++; 6938965ea79SLois Curfman McInnes } 6948965ea79SLois Curfman McInnes 6959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6979566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 698dd400576SPatrick Sanan if (rank == 0) { 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7009566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7018965ea79SLois Curfman McInnes } 7029566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7039566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7058965ea79SLois Curfman McInnes } 7063a40ed3dSBarry Smith PetscFunctionReturn(0); 7078965ea79SLois Curfman McInnes } 7088965ea79SLois Curfman McInnes 709dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7108965ea79SLois Curfman McInnes { 711ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7128965ea79SLois Curfman McInnes 713433994e6SBarry Smith PetscFunctionBegin; 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7180f5bd95cSBarry Smith 71932077d6dSBarry Smith if (iascii || issocket || isdraw) { 7209566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7210f5bd95cSBarry Smith } else if (isbinary) { 7229566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 72311aeaf0aSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 7258965ea79SLois Curfman McInnes } 7268965ea79SLois Curfman McInnes 727dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7288965ea79SLois Curfman McInnes { 7293501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7303501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7313966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7328965ea79SLois Curfman McInnes 7333a40ed3dSBarry Smith PetscFunctionBegin; 7344e220ebcSLois Curfman McInnes info->block_size = 1.0; 7352205254eSKarl Rupp 7369566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7372205254eSKarl Rupp 7384e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7394e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7408965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7414e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7424e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7434e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7444e220ebcSLois Curfman McInnes info->memory = isend[3]; 7454e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7468965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7471c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7482205254eSKarl Rupp 7494e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7504e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7514e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7524e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7534e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7548965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7562205254eSKarl Rupp 7574e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7584e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7594e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7604e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7614e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7628965ea79SLois Curfman McInnes } 7634e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7644e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7654e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7663a40ed3dSBarry Smith PetscFunctionReturn(0); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 769ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7708965ea79SLois Curfman McInnes { 77139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 77412c028f9SKris Buschelman switch (op) { 775512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77843674050SBarry Smith MatCheckPreallocated(A,1); 7799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78012c028f9SKris Buschelman break; 78112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78243674050SBarry Smith MatCheckPreallocated(A,1); 7834e0d8c25SBarry Smith a->roworiented = flg; 7849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78512c028f9SKris Buschelman break; 7868c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 78713fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 789071fcb05SBarry Smith case MAT_SORTED_FULL: 7909566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 79112c028f9SKris Buschelman break; 79212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7934e0d8c25SBarry Smith a->donotstash = flg; 79412c028f9SKris Buschelman break; 79577e54ba9SKris Buschelman case MAT_SYMMETRIC: 79677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7979a4540c5SBarry Smith case MAT_HERMITIAN: 7989a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 799600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8005d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 8019566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80277e54ba9SKris Buschelman break; 80312c028f9SKris Buschelman default: 80498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8053a40ed3dSBarry Smith } 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 809dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8105b2fa520SLois Curfman McInnes { 8115b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 812637a0070SStefano Zampini const PetscScalar *l; 813637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 814637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8155b2fa520SLois Curfman McInnes 8165b2fa520SLois Curfman McInnes PetscFunctionBegin; 8179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8199566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8205b2fa520SLois Curfman McInnes if (ll) { 8219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 82208401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8245b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8255b2fa520SLois Curfman McInnes x = l[i]; 826637a0070SStefano Zampini v = vv + i; 827637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8285b2fa520SLois Curfman McInnes } 8299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8315b2fa520SLois Curfman McInnes } 8325b2fa520SLois Curfman McInnes if (rr) { 833637a0070SStefano Zampini const PetscScalar *ar; 834637a0070SStefano Zampini 8359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 83608401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8386f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8399566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8435b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8445b2fa520SLois Curfman McInnes x = r[i]; 845637a0070SStefano Zampini v = vv + i*lda; 8462205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8475b2fa520SLois Curfman McInnes } 8489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8499566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8505b2fa520SLois Curfman McInnes } 8519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8525b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8535b2fa520SLois Curfman McInnes } 8545b2fa520SLois Curfman McInnes 855dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 856096963f5SLois Curfman McInnes { 8573501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 85813f74950SBarry Smith PetscInt i,j; 859616b8fbbSStefano Zampini PetscMPIInt size; 860329f5518SBarry Smith PetscReal sum = 0.0; 861637a0070SStefano Zampini const PetscScalar *av,*v; 8623501a2bdSLois Curfman McInnes 8633a40ed3dSBarry Smith PetscFunctionBegin; 8649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 865637a0070SStefano Zampini v = av; 8669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 867616b8fbbSStefano Zampini if (size == 1) { 8689566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8693501a2bdSLois Curfman McInnes } else { 8703501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 871d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 872329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8733501a2bdSLois Curfman McInnes } 8741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8758f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8773a40ed3dSBarry Smith } else if (type == NORM_1) { 878329f5518SBarry Smith PetscReal *tmp,*tmp2; 8799566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 880064f8208SBarry Smith *nrm = 0.0; 881637a0070SStefano Zampini v = av; 882d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 883d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8853501a2bdSLois Curfman McInnes } 8863501a2bdSLois Curfman McInnes } 8871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 888d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 889064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8903501a2bdSLois Curfman McInnes } 8919566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8933a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 894329f5518SBarry Smith PetscReal ntemp; 8959566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 897ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8983501a2bdSLois Curfman McInnes } 8999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9003a40ed3dSBarry Smith PetscFunctionReturn(0); 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes 903fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9043501a2bdSLois Curfman McInnes { 9053501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9063501a2bdSLois Curfman McInnes Mat B; 907d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 908637a0070SStefano Zampini PetscInt j,i,lda; 90987828ca2SBarry Smith PetscScalar *v; 9103501a2bdSLois Curfman McInnes 9113a40ed3dSBarry Smith PetscFunctionBegin; 912cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9139566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9159566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9169566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 917637a0070SStefano Zampini } else B = *matout; 9183501a2bdSLois Curfman McInnes 919637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9219566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9233501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9241acff37aSSatish Balay for (j=0; j<n; j++) { 9259566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 926637a0070SStefano Zampini v += lda; 9273501a2bdSLois Curfman McInnes } 9289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9299566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 932cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9333501a2bdSLois Curfman McInnes *matout = B; 9343501a2bdSLois Curfman McInnes } else { 9359566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9363501a2bdSLois Curfman McInnes } 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 938096963f5SLois Curfman McInnes } 939096963f5SLois Curfman McInnes 9406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 94152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9428965ea79SLois Curfman McInnes 9434994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 944273d9f13SBarry Smith { 945273d9f13SBarry Smith PetscFunctionBegin; 9469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 94818992e5dSStefano Zampini if (!A->preallocated) { 9499566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 95018992e5dSStefano Zampini } 951273d9f13SBarry Smith PetscFunctionReturn(0); 952273d9f13SBarry Smith } 953273d9f13SBarry Smith 954488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 955488007eeSBarry Smith { 956488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 957488007eeSBarry Smith 958488007eeSBarry Smith PetscFunctionBegin; 9599566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 960488007eeSBarry Smith PetscFunctionReturn(0); 961488007eeSBarry Smith } 962488007eeSBarry Smith 9637087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 964ba337c44SJed Brown { 965ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 966ba337c44SJed Brown 967ba337c44SJed Brown PetscFunctionBegin; 9689566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 969ba337c44SJed Brown PetscFunctionReturn(0); 970ba337c44SJed Brown } 971ba337c44SJed Brown 972ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 973ba337c44SJed Brown { 974ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 975ba337c44SJed Brown 976ba337c44SJed Brown PetscFunctionBegin; 9779566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 978ba337c44SJed Brown PetscFunctionReturn(0); 979ba337c44SJed Brown } 980ba337c44SJed Brown 981ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 982ba337c44SJed Brown { 983ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 984ba337c44SJed Brown 985ba337c44SJed Brown PetscFunctionBegin; 9869566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 987ba337c44SJed Brown PetscFunctionReturn(0); 988ba337c44SJed Brown } 989ba337c44SJed Brown 99049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 99149a6ff4bSBarry Smith { 992637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 99349a6ff4bSBarry Smith 99449a6ff4bSBarry Smith PetscFunctionBegin; 99528b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 99628b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 99849a6ff4bSBarry Smith PetscFunctionReturn(0); 99949a6ff4bSBarry Smith } 100049a6ff4bSBarry Smith 1001857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 100252c5f739Sprj- 1003857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10040716a85fSBarry Smith { 1005a873a8cdSSam Reynolds PetscInt i,m,n; 10060716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10070716a85fSBarry Smith PetscReal *work; 10080716a85fSBarry Smith 10090716a85fSBarry Smith PetscFunctionBegin; 10109566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1012857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10139566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1014857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10159566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1016a873a8cdSSam Reynolds } else { 10179566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1018a873a8cdSSam Reynolds } 1019857cbf51SRichard Tran Mills if (type == NORM_2) { 10200716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10210716a85fSBarry Smith } 1022857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10240716a85fSBarry Smith } else { 10251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10260716a85fSBarry Smith } 10279566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1028857cbf51SRichard Tran Mills if (type == NORM_2) { 1029a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1030857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1031a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10320716a85fSBarry Smith } 10330716a85fSBarry Smith PetscFunctionReturn(0); 10340716a85fSBarry Smith } 10350716a85fSBarry Smith 1036637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1037126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1038126e4e93SJose E. Roman { 1039126e4e93SJose E. Roman PetscScalar *da; 1040126e4e93SJose E. Roman PetscInt lda; 1041126e4e93SJose E. Roman 1042126e4e93SJose E. Roman PetscFunctionBegin; 1043126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1044126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1045126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1046126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1047126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1048126e4e93SJose E. Roman PetscFunctionReturn(0); 1049126e4e93SJose E. Roman } 1050126e4e93SJose E. Roman 10516947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10526947451fSStefano Zampini { 10536947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10546947451fSStefano Zampini PetscInt lda; 10556947451fSStefano Zampini 10566947451fSStefano Zampini PetscFunctionBegin; 105728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 105828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10596947451fSStefano Zampini if (!a->cvec) { 10609566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10626947451fSStefano Zampini } 10636947451fSStefano Zampini a->vecinuse = col + 1; 10649566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10659566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10669566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10676947451fSStefano Zampini *v = a->cvec; 10686947451fSStefano Zampini PetscFunctionReturn(0); 10696947451fSStefano Zampini } 10706947451fSStefano Zampini 10716947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10726947451fSStefano Zampini { 10736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10746947451fSStefano Zampini 10756947451fSStefano Zampini PetscFunctionBegin; 107628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 107728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10786947451fSStefano Zampini a->vecinuse = 0; 10799566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10809566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10816947451fSStefano Zampini *v = NULL; 10826947451fSStefano Zampini PetscFunctionReturn(0); 10836947451fSStefano Zampini } 10846947451fSStefano Zampini 10856947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10866947451fSStefano Zampini { 10876947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10886947451fSStefano Zampini PetscInt lda; 10896947451fSStefano Zampini 10906947451fSStefano Zampini PetscFunctionBegin; 109128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 109228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10936947451fSStefano Zampini if (!a->cvec) { 10949566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini a->vecinuse = col + 1; 10989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10999566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11009566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11019566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11026947451fSStefano Zampini *v = a->cvec; 11036947451fSStefano Zampini PetscFunctionReturn(0); 11046947451fSStefano Zampini } 11056947451fSStefano Zampini 11066947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11076947451fSStefano Zampini { 11086947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11096947451fSStefano Zampini 11106947451fSStefano Zampini PetscFunctionBegin; 111128b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 111228b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11136947451fSStefano Zampini a->vecinuse = 0; 11149566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11159566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11169566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11176947451fSStefano Zampini *v = NULL; 11186947451fSStefano Zampini PetscFunctionReturn(0); 11196947451fSStefano Zampini } 11206947451fSStefano Zampini 11216947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11226947451fSStefano Zampini { 11236947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11246947451fSStefano Zampini PetscInt lda; 11256947451fSStefano Zampini 11266947451fSStefano Zampini PetscFunctionBegin; 112728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 112828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11296947451fSStefano Zampini if (!a->cvec) { 11309566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11326947451fSStefano Zampini } 11336947451fSStefano Zampini a->vecinuse = col + 1; 11349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11359566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11369566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11376947451fSStefano Zampini *v = a->cvec; 11386947451fSStefano Zampini PetscFunctionReturn(0); 11396947451fSStefano Zampini } 11406947451fSStefano Zampini 11416947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11426947451fSStefano Zampini { 11436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11446947451fSStefano Zampini 11456947451fSStefano Zampini PetscFunctionBegin; 114628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 114728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11486947451fSStefano Zampini a->vecinuse = 0; 11499566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11509566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11516947451fSStefano Zampini *v = NULL; 11526947451fSStefano Zampini PetscFunctionReturn(0); 11536947451fSStefano Zampini } 11546947451fSStefano Zampini 1155637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1156637a0070SStefano Zampini { 1157637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1158637a0070SStefano Zampini 1159637a0070SStefano Zampini PetscFunctionBegin; 116028b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 116128b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11629566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1163637a0070SStefano Zampini PetscFunctionReturn(0); 1164637a0070SStefano Zampini } 1165637a0070SStefano Zampini 1166637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1167637a0070SStefano Zampini { 1168637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1169637a0070SStefano Zampini 1170637a0070SStefano Zampini PetscFunctionBegin; 117128b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117228b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11739566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1174637a0070SStefano Zampini PetscFunctionReturn(0); 1175637a0070SStefano Zampini } 1176637a0070SStefano Zampini 1177d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1178d5ea218eSStefano Zampini { 1179d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1180d5ea218eSStefano Zampini 1181d5ea218eSStefano Zampini PetscFunctionBegin; 118228b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118328b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11849566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1185d5ea218eSStefano Zampini PetscFunctionReturn(0); 1186d5ea218eSStefano Zampini } 1187d5ea218eSStefano Zampini 1188637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1189637a0070SStefano Zampini { 1190637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1191637a0070SStefano Zampini 1192637a0070SStefano Zampini PetscFunctionBegin; 11939566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1194637a0070SStefano Zampini PetscFunctionReturn(0); 1195637a0070SStefano Zampini } 1196637a0070SStefano Zampini 1197637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1198637a0070SStefano Zampini { 1199637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1200637a0070SStefano Zampini 1201637a0070SStefano Zampini PetscFunctionBegin; 12029566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1203637a0070SStefano Zampini PetscFunctionReturn(0); 1204637a0070SStefano Zampini } 1205637a0070SStefano Zampini 1206637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1207637a0070SStefano Zampini { 1208637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini PetscFunctionBegin; 12119566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1212637a0070SStefano Zampini PetscFunctionReturn(0); 1213637a0070SStefano Zampini } 1214637a0070SStefano Zampini 1215637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1216637a0070SStefano Zampini { 1217637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini PetscFunctionBegin; 12209566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1221637a0070SStefano Zampini PetscFunctionReturn(0); 1222637a0070SStefano Zampini } 1223637a0070SStefano Zampini 1224637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1225637a0070SStefano Zampini { 1226637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini PetscFunctionBegin; 12299566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1230637a0070SStefano Zampini PetscFunctionReturn(0); 1231637a0070SStefano Zampini } 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1234637a0070SStefano Zampini { 1235637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini PetscFunctionBegin; 12389566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1239637a0070SStefano Zampini PetscFunctionReturn(0); 1240637a0070SStefano Zampini } 1241637a0070SStefano Zampini 12426947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12436947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12446947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12456947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12466947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12476947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12485ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12496947451fSStefano Zampini 1250637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1251637a0070SStefano Zampini { 1252637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1253637a0070SStefano Zampini 1254637a0070SStefano Zampini PetscFunctionBegin; 125528b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 125628b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1257637a0070SStefano Zampini if (d->A) { 12589566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1259637a0070SStefano Zampini } 1260637a0070SStefano Zampini mat->boundtocpu = bind; 12616947451fSStefano Zampini if (!bind) { 12626947451fSStefano Zampini PetscBool iscuda; 12636947451fSStefano Zampini 12649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12656947451fSStefano Zampini if (!iscuda) { 12669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1267616b8fbbSStefano Zampini } 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1269616b8fbbSStefano Zampini if (!iscuda) { 12709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12716947451fSStefano Zampini } 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1278126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12796947451fSStefano Zampini } else { 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1286126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1287616b8fbbSStefano Zampini } 1288616b8fbbSStefano Zampini if (d->cmat) { 12899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12906947451fSStefano Zampini } 1291637a0070SStefano Zampini PetscFunctionReturn(0); 1292637a0070SStefano Zampini } 1293637a0070SStefano Zampini 1294637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1295637a0070SStefano Zampini { 1296637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1297637a0070SStefano Zampini PetscBool iscuda; 1298637a0070SStefano Zampini 1299637a0070SStefano Zampini PetscFunctionBegin; 1300d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1302637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1305637a0070SStefano Zampini if (!d->A) { 13069566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13079566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1309637a0070SStefano Zampini } 13109566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13119566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1312637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13136f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1314637a0070SStefano Zampini PetscFunctionReturn(0); 1315637a0070SStefano Zampini } 1316637a0070SStefano Zampini #endif 1317637a0070SStefano Zampini 131873a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 131973a71a0fSBarry Smith { 132073a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 132173a71a0fSBarry Smith 132273a71a0fSBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 132473a71a0fSBarry Smith PetscFunctionReturn(0); 132573a71a0fSBarry Smith } 132673a71a0fSBarry Smith 13273b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13283b49f96aSBarry Smith { 13293b49f96aSBarry Smith PetscFunctionBegin; 13303b49f96aSBarry Smith *missing = PETSC_FALSE; 13313b49f96aSBarry Smith PetscFunctionReturn(0); 13323b49f96aSBarry Smith } 13333b49f96aSBarry Smith 13344222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1335cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13366718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1337a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13386718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13396718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1340cc48ffa7SToby Isaac 13418965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 134209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134309dc0095SBarry Smith MatGetRow_MPIDense, 134409dc0095SBarry Smith MatRestoreRow_MPIDense, 134509dc0095SBarry Smith MatMult_MPIDense, 134697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13477c922b88SBarry Smith MatMultTranspose_MPIDense, 13487c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin NULL, 1351f4259b30SLisandro Dalcin NULL, 1352f4259b30SLisandro Dalcin /* 10*/ NULL, 1353f4259b30SLisandro Dalcin NULL, 1354f4259b30SLisandro Dalcin NULL, 1355f4259b30SLisandro Dalcin NULL, 135609dc0095SBarry Smith MatTranspose_MPIDense, 135797304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13586e4ee0c6SHong Zhang MatEqual_MPIDense, 135909dc0095SBarry Smith MatGetDiagonal_MPIDense, 13605b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 136109dc0095SBarry Smith MatNorm_MPIDense, 136297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136409dc0095SBarry Smith MatSetOption_MPIDense, 136509dc0095SBarry Smith MatZeroEntries_MPIDense, 1366d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin NULL, 13714994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 1374c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1375f4259b30SLisandro Dalcin NULL, 1376d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin NULL, 1381d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13827dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1383f4259b30SLisandro Dalcin NULL, 138409dc0095SBarry Smith MatGetValues_MPIDense, 1385a76f77c3SStefano Zampini MatCopy_MPIDense, 1386f4259b30SLisandro Dalcin /* 44*/ NULL, 138709dc0095SBarry Smith MatScale_MPIDense, 13882f605a99SJose E. Roman MatShift_MPIDense, 1389f4259b30SLisandro Dalcin NULL, 1390f4259b30SLisandro Dalcin NULL, 139173a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin /* 54*/ NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 14017dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1402b9b97703SBarry Smith MatDestroy_MPIDense, 1403b9b97703SBarry Smith MatView_MPIDense, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin /* 64*/ NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin /* 69*/ NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin /* 74*/ NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin /* 79*/ NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 14255bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin /* 89*/ NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin /* 94*/ NULL, 1437f4259b30SLisandro Dalcin NULL, 14386718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1439cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1440f4259b30SLisandro Dalcin NULL, 14414222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444ba337c44SJed Brown MatConjugate_MPIDense, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin /*104*/ NULL, 1447ba337c44SJed Brown MatRealPart_MPIDense, 1448ba337c44SJed Brown MatImaginaryPart_MPIDense, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin /*109*/ NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL, 145449a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14553b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1456f4259b30SLisandro Dalcin /*114*/ NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin /*119*/ NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin /*124*/ NULL, 1467a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin /*129*/ NULL, 1472f4259b30SLisandro Dalcin NULL, 14736718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1474cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin /*134*/ NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin /*139*/ NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 14864222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1487f4259b30SLisandro Dalcin /*145*/ NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL 1490ba337c44SJed Brown }; 14918965ea79SLois Curfman McInnes 14927087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1493a23d5eceSKris Buschelman { 1494637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1495637a0070SStefano Zampini PetscBool iscuda; 1496a23d5eceSKris Buschelman 1497a23d5eceSKris Buschelman PetscFunctionBegin; 149828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1501637a0070SStefano Zampini if (!a->A) { 15029566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15039566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1505637a0070SStefano Zampini } 15069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15079566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15089566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1509637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15106f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1511a23d5eceSKris Buschelman PetscFunctionReturn(0); 1512a23d5eceSKris Buschelman } 1513a23d5eceSKris Buschelman 15144e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15154e29119aSPierre Jolivet { 15164e29119aSPierre Jolivet Mat B,C; 15174e29119aSPierre Jolivet 15184e29119aSPierre Jolivet PetscFunctionBegin; 15199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15209566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15224e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15234e29119aSPierre Jolivet C = *newmat; 15244e29119aSPierre Jolivet } else C = NULL; 15259566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15274e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15289566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15294e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15304e29119aSPierre Jolivet PetscFunctionReturn(0); 15314e29119aSPierre Jolivet } 15324e29119aSPierre Jolivet 15334e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15344e29119aSPierre Jolivet { 15354e29119aSPierre Jolivet Mat B,C; 15364e29119aSPierre Jolivet 15374e29119aSPierre Jolivet PetscFunctionBegin; 15389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15399566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15404e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15414e29119aSPierre Jolivet C = *newmat; 15424e29119aSPierre Jolivet } else C = NULL; 15439566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15454e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15469566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15474e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15484e29119aSPierre Jolivet PetscFunctionReturn(0); 15494e29119aSPierre Jolivet } 15504e29119aSPierre Jolivet 155165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1552cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15538baccfbdSHong Zhang { 15548ea901baSHong Zhang Mat mat_elemental; 155532d7a744SHong Zhang PetscScalar *v; 155632d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15578ea901baSHong Zhang 15588baccfbdSHong Zhang PetscFunctionBegin; 1559378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1560378336b6SHong Zhang mat_elemental = *newmat; 15619566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1562378336b6SHong Zhang } else { 15639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15659566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15669566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15679566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1568378336b6SHong Zhang } 1569378336b6SHong Zhang 15709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 157132d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 157232d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15738ea901baSHong Zhang 1574637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15759566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15769566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15818ea901baSHong Zhang 1582511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15839566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15848ea901baSHong Zhang } else { 15858ea901baSHong Zhang *newmat = mat_elemental; 15868ea901baSHong Zhang } 15878baccfbdSHong Zhang PetscFunctionReturn(0); 15888baccfbdSHong Zhang } 158965b80a83SHong Zhang #endif 15908baccfbdSHong Zhang 1591af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 159286aefd0dSHong Zhang { 159386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 159486aefd0dSHong Zhang 159586aefd0dSHong Zhang PetscFunctionBegin; 15969566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 159786aefd0dSHong Zhang PetscFunctionReturn(0); 159886aefd0dSHong Zhang } 159986aefd0dSHong Zhang 1600af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 160186aefd0dSHong Zhang { 160286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160386aefd0dSHong Zhang 160486aefd0dSHong Zhang PetscFunctionBegin; 16059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 160686aefd0dSHong Zhang PetscFunctionReturn(0); 160786aefd0dSHong Zhang } 160886aefd0dSHong Zhang 160994e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 161094e2cb23SJakub Kruzik { 161194e2cb23SJakub Kruzik Mat_MPIDense *mat; 161294e2cb23SJakub Kruzik PetscInt m,nloc,N; 161394e2cb23SJakub Kruzik 161494e2cb23SJakub Kruzik PetscFunctionBegin; 16159566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 161794e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 161894e2cb23SJakub Kruzik PetscInt sum; 161994e2cb23SJakub Kruzik 162094e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16219566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 162294e2cb23SJakub Kruzik } 162394e2cb23SJakub Kruzik /* Check sum(n) = N */ 16241c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 162508401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 162694e2cb23SJakub Kruzik 16279566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16289566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 162994e2cb23SJakub Kruzik } 163094e2cb23SJakub Kruzik 163194e2cb23SJakub Kruzik /* numeric phase */ 163294e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16339566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 163494e2cb23SJakub Kruzik PetscFunctionReturn(0); 163594e2cb23SJakub Kruzik } 163694e2cb23SJakub Kruzik 1637637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1638637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1639637a0070SStefano Zampini { 1640637a0070SStefano Zampini Mat B; 1641637a0070SStefano Zampini Mat_MPIDense *m; 1642637a0070SStefano Zampini 1643637a0070SStefano Zampini PetscFunctionBegin; 1644637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16459566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1646637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16479566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1648637a0070SStefano Zampini } 1649637a0070SStefano Zampini 1650637a0070SStefano Zampini B = *newmat; 16519566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16529566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1669637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1670637a0070SStefano Zampini if (m->A) { 16719566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1672637a0070SStefano Zampini } 1673637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1674637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1675637a0070SStefano Zampini PetscFunctionReturn(0); 1676637a0070SStefano Zampini } 1677637a0070SStefano Zampini 1678637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1679637a0070SStefano Zampini { 1680637a0070SStefano Zampini Mat B; 1681637a0070SStefano Zampini Mat_MPIDense *m; 1682637a0070SStefano Zampini 1683637a0070SStefano Zampini PetscFunctionBegin; 1684637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16859566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1686637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16879566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1688637a0070SStefano Zampini } 1689637a0070SStefano Zampini 1690637a0070SStefano Zampini B = *newmat; 16919566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16929566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16939566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1708f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1709637a0070SStefano Zampini if (m->A) { 17109566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1711637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1712637a0070SStefano Zampini } else { 1713637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1714637a0070SStefano Zampini } 17159566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1716637a0070SStefano Zampini 1717637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1718637a0070SStefano Zampini PetscFunctionReturn(0); 1719637a0070SStefano Zampini } 1720637a0070SStefano Zampini #endif 1721637a0070SStefano Zampini 17226947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17236947451fSStefano Zampini { 17246947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17256947451fSStefano Zampini PetscInt lda; 17266947451fSStefano Zampini 17276947451fSStefano Zampini PetscFunctionBegin; 172828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 172928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17306947451fSStefano Zampini if (!a->cvec) { 17319566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17326947451fSStefano Zampini } 17336947451fSStefano Zampini a->vecinuse = col + 1; 17349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17359566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17369566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17376947451fSStefano Zampini *v = a->cvec; 17386947451fSStefano Zampini PetscFunctionReturn(0); 17396947451fSStefano Zampini } 17406947451fSStefano Zampini 17416947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17426947451fSStefano Zampini { 17436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17446947451fSStefano Zampini 17456947451fSStefano Zampini PetscFunctionBegin; 174628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 174728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17486947451fSStefano Zampini a->vecinuse = 0; 17499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17509566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17516947451fSStefano Zampini *v = NULL; 17526947451fSStefano Zampini PetscFunctionReturn(0); 17536947451fSStefano Zampini } 17546947451fSStefano Zampini 17556947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17566947451fSStefano Zampini { 17576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17586947451fSStefano Zampini PetscInt lda; 17596947451fSStefano Zampini 17606947451fSStefano Zampini PetscFunctionBegin; 176128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 176228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17636947451fSStefano Zampini if (!a->cvec) { 17649566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17656947451fSStefano Zampini } 17666947451fSStefano Zampini a->vecinuse = col + 1; 17679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17699566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17709566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17716947451fSStefano Zampini *v = a->cvec; 17726947451fSStefano Zampini PetscFunctionReturn(0); 17736947451fSStefano Zampini } 17746947451fSStefano Zampini 17756947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17766947451fSStefano Zampini { 17776947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17786947451fSStefano Zampini 17796947451fSStefano Zampini PetscFunctionBegin; 17805f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17815f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17826947451fSStefano Zampini a->vecinuse = 0; 17839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17849566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17859566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17866947451fSStefano Zampini *v = NULL; 17876947451fSStefano Zampini PetscFunctionReturn(0); 17886947451fSStefano Zampini } 17896947451fSStefano Zampini 17906947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17916947451fSStefano Zampini { 17926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17936947451fSStefano Zampini PetscInt lda; 17946947451fSStefano Zampini 17956947451fSStefano Zampini PetscFunctionBegin; 17965f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17975f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17986947451fSStefano Zampini if (!a->cvec) { 17999566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18006947451fSStefano Zampini } 18016947451fSStefano Zampini a->vecinuse = col + 1; 18029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18049566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18056947451fSStefano Zampini *v = a->cvec; 18066947451fSStefano Zampini PetscFunctionReturn(0); 18076947451fSStefano Zampini } 18086947451fSStefano Zampini 18096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18106947451fSStefano Zampini { 18116947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18126947451fSStefano Zampini 18136947451fSStefano Zampini PetscFunctionBegin; 18145f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18155f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18166947451fSStefano Zampini a->vecinuse = 0; 18179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18189566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18196947451fSStefano Zampini *v = NULL; 18206947451fSStefano Zampini PetscFunctionReturn(0); 18216947451fSStefano Zampini } 18226947451fSStefano Zampini 18235ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18245ea7661aSPierre Jolivet { 18255ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1826616b8fbbSStefano Zampini Mat_MPIDense *c; 1827616b8fbbSStefano Zampini MPI_Comm comm; 18285ea7661aSPierre Jolivet 18295ea7661aSPierre Jolivet PetscFunctionBegin; 18309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18315f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18325f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18335ea7661aSPierre Jolivet if (!a->cmat) { 18349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18359566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18369566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18379566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1840616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 18419566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18429566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18455ea7661aSPierre Jolivet } 1846616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18475f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18489566063dSJacob Faibussowitsch PetscCall(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1849616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1850616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18515ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18525ea7661aSPierre Jolivet *v = a->cmat; 18535ea7661aSPierre Jolivet PetscFunctionReturn(0); 18545ea7661aSPierre Jolivet } 18555ea7661aSPierre Jolivet 18565ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18575ea7661aSPierre Jolivet { 18585ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1859616b8fbbSStefano Zampini Mat_MPIDense *c; 18605ea7661aSPierre Jolivet 18615ea7661aSPierre Jolivet PetscFunctionBegin; 18625f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18635f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18645f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18655ea7661aSPierre Jolivet a->matinuse = 0; 1866616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18685ea7661aSPierre Jolivet *v = NULL; 18695ea7661aSPierre Jolivet PetscFunctionReturn(0); 18705ea7661aSPierre Jolivet } 18715ea7661aSPierre Jolivet 1872002bc6daSRichard Tran Mills /*MC 1873002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1874002bc6daSRichard Tran Mills 1875002bc6daSRichard Tran Mills Options Database Keys: 1876002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1877002bc6daSRichard Tran Mills 1878002bc6daSRichard Tran Mills Level: beginner 1879002bc6daSRichard Tran Mills 1880db781477SPatrick Sanan .seealso: `MatCreateDense()` 1881002bc6daSRichard Tran Mills 1882002bc6daSRichard Tran Mills M*/ 18838cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1884273d9f13SBarry Smith { 1885273d9f13SBarry Smith Mat_MPIDense *a; 1886273d9f13SBarry Smith 1887273d9f13SBarry Smith PetscFunctionBegin; 18889566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1889b0a32e0cSBarry Smith mat->data = (void*)a; 18909566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1891273d9f13SBarry Smith 1892273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1893273d9f13SBarry Smith 1894273d9f13SBarry Smith /* build cache for off array entries formed */ 1895273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18962205254eSKarl Rupp 18979566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1898273d9f13SBarry Smith 1899273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1900f4259b30SLisandro Dalcin a->lvec = NULL; 1901f4259b30SLisandro Dalcin a->Mvctx = NULL; 1902273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1903273d9f13SBarry Smith 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19258baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19278baccfbdSHong Zhang #endif 1928d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1930d24d4204SJose E. Roman #endif 1931637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1933637a0070SStefano Zampini #endif 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19376718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19406718818eSStefano Zampini #endif 19418949adfdSHong Zhang 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1945273d9f13SBarry Smith PetscFunctionReturn(0); 1946273d9f13SBarry Smith } 1947273d9f13SBarry Smith 1948209238afSKris Buschelman /*MC 1949637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1950637a0070SStefano Zampini 1951637a0070SStefano Zampini Options Database Keys: 1952637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1953637a0070SStefano Zampini 1954637a0070SStefano Zampini Level: beginner 1955637a0070SStefano Zampini 1956637a0070SStefano Zampini .seealso: 1957637a0070SStefano Zampini 1958637a0070SStefano Zampini M*/ 1959637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1960a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1961637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1962637a0070SStefano Zampini { 1963637a0070SStefano Zampini PetscFunctionBegin; 19649566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19659566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19669566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1967637a0070SStefano Zampini PetscFunctionReturn(0); 1968637a0070SStefano Zampini } 1969637a0070SStefano Zampini #endif 1970637a0070SStefano Zampini 1971637a0070SStefano Zampini /*MC 1972002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1973209238afSKris Buschelman 1974209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1975209238afSKris Buschelman and MATMPIDENSE otherwise. 1976209238afSKris Buschelman 1977209238afSKris Buschelman Options Database Keys: 1978209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1979209238afSKris Buschelman 1980209238afSKris Buschelman Level: beginner 1981209238afSKris Buschelman 1982c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 19836947451fSStefano Zampini M*/ 19846947451fSStefano Zampini 19856947451fSStefano Zampini /*MC 19866947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19876947451fSStefano Zampini 19886947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19896947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19906947451fSStefano Zampini 19916947451fSStefano Zampini Options Database Keys: 19926947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19936947451fSStefano Zampini 19946947451fSStefano Zampini Level: beginner 19956947451fSStefano Zampini 1996c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 1997209238afSKris Buschelman M*/ 1998209238afSKris Buschelman 1999273d9f13SBarry Smith /*@C 2000273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2001273d9f13SBarry Smith 20028f490ea3SStefano Zampini Collective 2003273d9f13SBarry Smith 2004273d9f13SBarry Smith Input Parameters: 20051c4f3114SJed Brown . B - the matrix 20060298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2007273d9f13SBarry Smith to control all matrix memory allocation. 2008273d9f13SBarry Smith 2009273d9f13SBarry Smith Notes: 2010273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2011273d9f13SBarry Smith storage by columns. 2012273d9f13SBarry Smith 2013273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2014273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20150298fd71SBarry Smith set data=NULL. 2016273d9f13SBarry Smith 2017273d9f13SBarry Smith Level: intermediate 2018273d9f13SBarry Smith 2019db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2020273d9f13SBarry Smith @*/ 20211c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2022273d9f13SBarry Smith { 2023273d9f13SBarry Smith PetscFunctionBegin; 2024d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2025cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2026273d9f13SBarry Smith PetscFunctionReturn(0); 2027273d9f13SBarry Smith } 2028273d9f13SBarry Smith 2029d3042a70SBarry Smith /*@ 2030637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2031d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2032d3042a70SBarry Smith into a matrix 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith Not Collective 2035d3042a70SBarry Smith 2036d3042a70SBarry Smith Input Parameters: 2037d3042a70SBarry Smith + mat - the matrix 2038d3042a70SBarry Smith - array - the array in column major order 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith Notes: 2041d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2042d3042a70SBarry Smith freed when the matrix is destroyed. 2043d3042a70SBarry Smith 2044d3042a70SBarry Smith Level: developer 2045d3042a70SBarry Smith 2046db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2047d3042a70SBarry Smith 2048d3042a70SBarry Smith @*/ 2049637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2050d3042a70SBarry Smith { 2051d3042a70SBarry Smith PetscFunctionBegin; 2052d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2053cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2055637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2056637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2057637a0070SStefano Zampini #endif 2058d3042a70SBarry Smith PetscFunctionReturn(0); 2059d3042a70SBarry Smith } 2060d3042a70SBarry Smith 2061d3042a70SBarry Smith /*@ 2062d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2063d3042a70SBarry Smith 2064d3042a70SBarry Smith Not Collective 2065d3042a70SBarry Smith 2066d3042a70SBarry Smith Input Parameters: 2067d3042a70SBarry Smith . mat - the matrix 2068d3042a70SBarry Smith 2069d3042a70SBarry Smith Notes: 2070d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2071d3042a70SBarry Smith 2072d3042a70SBarry Smith Level: developer 2073d3042a70SBarry Smith 2074db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2075d3042a70SBarry Smith 2076d3042a70SBarry Smith @*/ 2077d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2078d3042a70SBarry Smith { 2079d3042a70SBarry Smith PetscFunctionBegin; 2080d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2081cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 20829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2083d3042a70SBarry Smith PetscFunctionReturn(0); 2084d3042a70SBarry Smith } 2085d3042a70SBarry Smith 2086d5ea218eSStefano Zampini /*@ 2087d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2088d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2089d5ea218eSStefano Zampini into a matrix 2090d5ea218eSStefano Zampini 2091d5ea218eSStefano Zampini Not Collective 2092d5ea218eSStefano Zampini 2093d5ea218eSStefano Zampini Input Parameters: 2094d5ea218eSStefano Zampini + mat - the matrix 2095d5ea218eSStefano Zampini - array - the array in column major order 2096d5ea218eSStefano Zampini 2097d5ea218eSStefano Zampini Notes: 2098d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2099d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2100d5ea218eSStefano Zampini 2101d5ea218eSStefano Zampini Level: developer 2102d5ea218eSStefano Zampini 2103db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2104d5ea218eSStefano Zampini @*/ 2105d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2106d5ea218eSStefano Zampini { 2107d5ea218eSStefano Zampini PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2109cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2111d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2112d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2113d5ea218eSStefano Zampini #endif 2114d5ea218eSStefano Zampini PetscFunctionReturn(0); 2115d5ea218eSStefano Zampini } 2116d5ea218eSStefano Zampini 2117637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21188965ea79SLois Curfman McInnes /*@C 2119637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2120637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2121637a0070SStefano Zampini into a matrix 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Not Collective 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini Input Parameters: 2126637a0070SStefano Zampini + mat - the matrix 2127637a0070SStefano Zampini - array - the array in column major order 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini Notes: 2130637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2131637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini Level: developer 2134637a0070SStefano Zampini 2135db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2136637a0070SStefano Zampini @*/ 2137637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2138637a0070SStefano Zampini { 2139637a0070SStefano Zampini PetscFunctionBegin; 2140d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2141cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21429566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2143637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2144637a0070SStefano Zampini PetscFunctionReturn(0); 2145637a0070SStefano Zampini } 2146637a0070SStefano Zampini 2147637a0070SStefano Zampini /*@C 2148637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2149637a0070SStefano Zampini 2150637a0070SStefano Zampini Not Collective 2151637a0070SStefano Zampini 2152637a0070SStefano Zampini Input Parameters: 2153637a0070SStefano Zampini . mat - the matrix 2154637a0070SStefano Zampini 2155637a0070SStefano Zampini Notes: 2156637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2157637a0070SStefano Zampini 2158637a0070SStefano Zampini Level: developer 2159637a0070SStefano Zampini 2160db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini @*/ 2163637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2164637a0070SStefano Zampini { 2165637a0070SStefano Zampini PetscFunctionBegin; 2166d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2167cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21689566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2169637a0070SStefano Zampini PetscFunctionReturn(0); 2170637a0070SStefano Zampini } 2171637a0070SStefano Zampini 2172637a0070SStefano Zampini /*@C 2173d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2174d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2175d5ea218eSStefano Zampini into a matrix 2176d5ea218eSStefano Zampini 2177d5ea218eSStefano Zampini Not Collective 2178d5ea218eSStefano Zampini 2179d5ea218eSStefano Zampini Input Parameters: 2180d5ea218eSStefano Zampini + mat - the matrix 2181d5ea218eSStefano Zampini - array - the array in column major order 2182d5ea218eSStefano Zampini 2183d5ea218eSStefano Zampini Notes: 2184d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2185d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2186d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2187d5ea218eSStefano Zampini 2188d5ea218eSStefano Zampini Level: developer 2189d5ea218eSStefano Zampini 2190db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2191d5ea218eSStefano Zampini @*/ 2192d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2193d5ea218eSStefano Zampini { 2194d5ea218eSStefano Zampini PetscFunctionBegin; 2195d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2196cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2198d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2199d5ea218eSStefano Zampini PetscFunctionReturn(0); 2200d5ea218eSStefano Zampini } 2201d5ea218eSStefano Zampini 2202d5ea218eSStefano Zampini /*@C 2203637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2204637a0070SStefano Zampini 2205637a0070SStefano Zampini Not Collective 2206637a0070SStefano Zampini 2207637a0070SStefano Zampini Input Parameters: 2208637a0070SStefano Zampini . A - the matrix 2209637a0070SStefano Zampini 2210637a0070SStefano Zampini Output Parameters 2211637a0070SStefano Zampini . array - the GPU array in column major order 2212637a0070SStefano Zampini 2213637a0070SStefano Zampini Notes: 2214637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2215637a0070SStefano Zampini 2216637a0070SStefano Zampini Level: developer 2217637a0070SStefano Zampini 2218db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2219637a0070SStefano Zampini @*/ 2220637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2221637a0070SStefano Zampini { 2222637a0070SStefano Zampini PetscFunctionBegin; 2223d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2224cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22259566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2226637a0070SStefano Zampini PetscFunctionReturn(0); 2227637a0070SStefano Zampini } 2228637a0070SStefano Zampini 2229637a0070SStefano Zampini /*@C 2230637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Not Collective 2233637a0070SStefano Zampini 2234637a0070SStefano Zampini Input Parameters: 2235637a0070SStefano Zampini + A - the matrix 2236637a0070SStefano Zampini - array - the GPU array in column major order 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Notes: 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini Level: developer 2241637a0070SStefano Zampini 2242db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2243637a0070SStefano Zampini @*/ 2244637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2245637a0070SStefano Zampini { 2246637a0070SStefano Zampini PetscFunctionBegin; 2247d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2248cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22499566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2250637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2251637a0070SStefano Zampini PetscFunctionReturn(0); 2252637a0070SStefano Zampini } 2253637a0070SStefano Zampini 2254637a0070SStefano Zampini /*@C 2255637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2256637a0070SStefano Zampini 2257637a0070SStefano Zampini Not Collective 2258637a0070SStefano Zampini 2259637a0070SStefano Zampini Input Parameters: 2260637a0070SStefano Zampini . A - the matrix 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini Output Parameters 2263637a0070SStefano Zampini . array - the GPU array in column major order 2264637a0070SStefano Zampini 2265637a0070SStefano Zampini Notes: 2266637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2267637a0070SStefano Zampini 2268637a0070SStefano Zampini Level: developer 2269637a0070SStefano Zampini 2270db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2271637a0070SStefano Zampini @*/ 2272637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2273637a0070SStefano Zampini { 2274637a0070SStefano Zampini PetscFunctionBegin; 2275d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2276cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2277637a0070SStefano Zampini PetscFunctionReturn(0); 2278637a0070SStefano Zampini } 2279637a0070SStefano Zampini 2280637a0070SStefano Zampini /*@C 2281637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2282637a0070SStefano Zampini 2283637a0070SStefano Zampini Not Collective 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini Input Parameters: 2286637a0070SStefano Zampini + A - the matrix 2287637a0070SStefano Zampini - array - the GPU array in column major order 2288637a0070SStefano Zampini 2289637a0070SStefano Zampini Notes: 2290637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini Level: developer 2293637a0070SStefano Zampini 2294db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2295637a0070SStefano Zampini @*/ 2296637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2297637a0070SStefano Zampini { 2298637a0070SStefano Zampini PetscFunctionBegin; 2299cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2300637a0070SStefano Zampini PetscFunctionReturn(0); 2301637a0070SStefano Zampini } 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini /*@C 2304637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini Not Collective 2307637a0070SStefano Zampini 2308637a0070SStefano Zampini Input Parameters: 2309637a0070SStefano Zampini . A - the matrix 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini Output Parameters 2312637a0070SStefano Zampini . array - the GPU array in column major order 2313637a0070SStefano Zampini 2314637a0070SStefano Zampini Notes: 2315637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini Level: developer 2318637a0070SStefano Zampini 2319db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2320637a0070SStefano Zampini @*/ 2321637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2322637a0070SStefano Zampini { 2323637a0070SStefano Zampini PetscFunctionBegin; 2324d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2325cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23269566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2327637a0070SStefano Zampini PetscFunctionReturn(0); 2328637a0070SStefano Zampini } 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini /*@C 2331637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Not Collective 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Input Parameters: 2336637a0070SStefano Zampini + A - the matrix 2337637a0070SStefano Zampini - array - the GPU array in column major order 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Notes: 2340637a0070SStefano Zampini 2341637a0070SStefano Zampini Level: developer 2342637a0070SStefano Zampini 2343db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2344637a0070SStefano Zampini @*/ 2345637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2346637a0070SStefano Zampini { 2347637a0070SStefano Zampini PetscFunctionBegin; 2348d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2349cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23509566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2351637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2352637a0070SStefano Zampini PetscFunctionReturn(0); 2353637a0070SStefano Zampini } 2354637a0070SStefano Zampini #endif 2355637a0070SStefano Zampini 2356637a0070SStefano Zampini /*@C 2357637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23588965ea79SLois Curfman McInnes 2359d083f849SBarry Smith Collective 2360db81eaa0SLois Curfman McInnes 23618965ea79SLois Curfman McInnes Input Parameters: 2362db81eaa0SLois Curfman McInnes + comm - MPI communicator 23638965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2364db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23658965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2366db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23676cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2368dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23698965ea79SLois Curfman McInnes 23708965ea79SLois Curfman McInnes Output Parameter: 2371477f1c0bSLois Curfman McInnes . A - the matrix 23728965ea79SLois Curfman McInnes 2373b259b22eSLois Curfman McInnes Notes: 237439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 237539ddd567SLois Curfman McInnes storage by columns. 2376002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2377002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23788965ea79SLois Curfman McInnes 237918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 238018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23816cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 238218f449edSLois Curfman McInnes 23838965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23848965ea79SLois Curfman McInnes (possibly both). 23858965ea79SLois Curfman McInnes 2386027ccd11SLois Curfman McInnes Level: intermediate 2387027ccd11SLois Curfman McInnes 2388db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 23898965ea79SLois Curfman McInnes @*/ 239069b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23918965ea79SLois Curfman McInnes { 23923a40ed3dSBarry Smith PetscFunctionBegin; 23939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 23956f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 23969566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 23976f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 23983a40ed3dSBarry Smith PetscFunctionReturn(0); 23998965ea79SLois Curfman McInnes } 24008965ea79SLois Curfman McInnes 2401637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2402637a0070SStefano Zampini /*@C 2403637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2404637a0070SStefano Zampini 2405637a0070SStefano Zampini Collective 2406637a0070SStefano Zampini 2407637a0070SStefano Zampini Input Parameters: 2408637a0070SStefano Zampini + comm - MPI communicator 2409637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2410637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2411637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2412637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2413637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2414637a0070SStefano Zampini to control matrix memory allocation. 2415637a0070SStefano Zampini 2416637a0070SStefano Zampini Output Parameter: 2417637a0070SStefano Zampini . A - the matrix 2418637a0070SStefano Zampini 2419637a0070SStefano Zampini Notes: 2420637a0070SStefano Zampini 2421637a0070SStefano Zampini Level: intermediate 2422637a0070SStefano Zampini 2423db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2424637a0070SStefano Zampini @*/ 2425637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2426637a0070SStefano Zampini { 2427637a0070SStefano Zampini PetscFunctionBegin; 24289566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2429637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24316f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24329566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24336f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2434637a0070SStefano Zampini PetscFunctionReturn(0); 2435637a0070SStefano Zampini } 2436637a0070SStefano Zampini #endif 2437637a0070SStefano Zampini 24386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24398965ea79SLois Curfman McInnes { 24408965ea79SLois Curfman McInnes Mat mat; 24413501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24428965ea79SLois Curfman McInnes 24433a40ed3dSBarry Smith PetscFunctionBegin; 2444f4259b30SLisandro Dalcin *newmat = NULL; 24459566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24479566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2448834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24495aa7edbeSHong Zhang 2450d5f3da31SBarry Smith mat->factortype = A->factortype; 2451c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2452273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24538965ea79SLois Curfman McInnes 2454e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24553782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2456e04c1aa4SHong Zhang 24579566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24589566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24598965ea79SLois Curfman McInnes 24609566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 246201b82886SBarry Smith 24638965ea79SLois Curfman McInnes *newmat = mat; 24643a40ed3dSBarry Smith PetscFunctionReturn(0); 24658965ea79SLois Curfman McInnes } 24668965ea79SLois Curfman McInnes 2467eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2468eb91f321SVaclav Hapla { 246987d5ce66SSatish Balay PetscBool isbinary; 247087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 247187d5ce66SSatish Balay PetscBool ishdf5; 247287d5ce66SSatish Balay #endif 2473eb91f321SVaclav Hapla 2474eb91f321SVaclav Hapla PetscFunctionBegin; 2475eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2476eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2477eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 248087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 248287d5ce66SSatish Balay #endif 2483eb91f321SVaclav Hapla if (isbinary) { 24849566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2485eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 248687d5ce66SSatish Balay } else if (ishdf5) { 24879566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2488eb91f321SVaclav Hapla #endif 248998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2490eb91f321SVaclav Hapla PetscFunctionReturn(0); 2491eb91f321SVaclav Hapla } 2492eb91f321SVaclav Hapla 24936718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24946e4ee0c6SHong Zhang { 24956e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24966e4ee0c6SHong Zhang Mat a,b; 249790ace30eSBarry Smith 24986e4ee0c6SHong Zhang PetscFunctionBegin; 24996e4ee0c6SHong Zhang a = matA->A; 25006e4ee0c6SHong Zhang b = matB->A; 25012cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25022cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25036e4ee0c6SHong Zhang PetscFunctionReturn(0); 25046e4ee0c6SHong Zhang } 250590ace30eSBarry Smith 25066718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2507baa3c1c6SHong Zhang { 25086718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2509baa3c1c6SHong Zhang 2510baa3c1c6SHong Zhang PetscFunctionBegin; 25119566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25139566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2514baa3c1c6SHong Zhang PetscFunctionReturn(0); 2515baa3c1c6SHong Zhang } 2516baa3c1c6SHong Zhang 25176718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2518cc48ffa7SToby Isaac { 25196718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2520cc48ffa7SToby Isaac 2521cc48ffa7SToby Isaac PetscFunctionBegin; 25229566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25239566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25249566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2525cc48ffa7SToby Isaac PetscFunctionReturn(0); 2526cc48ffa7SToby Isaac } 2527cc48ffa7SToby Isaac 25286718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2529cb20be35SHong Zhang { 2530baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25316718818eSStefano Zampini Mat_TransMatMultDense *atb; 2532cb20be35SHong Zhang MPI_Comm comm; 25336718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25346718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2535637a0070SStefano Zampini const PetscScalar *atbarray; 2536a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2537e68c0b26SHong Zhang const PetscInt *ranges; 2538cb20be35SHong Zhang 2539cb20be35SHong Zhang PetscFunctionBegin; 25406718818eSStefano Zampini MatCheckProduct(C,3); 25415f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25426718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25436718818eSStefano Zampini recvcounts = atb->recvcounts; 25446718818eSStefano Zampini sendbuf = atb->sendbuf; 25456718818eSStefano Zampini 25469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2548e68c0b26SHong Zhang 2549c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25509566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2551cb20be35SHong Zhang 25529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2553cb20be35SHong Zhang 2554660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25559566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2557637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2558baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2559a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2560cb20be35SHong Zhang } 2561cb20be35SHong Zhang } 25629566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2563637a0070SStefano Zampini 2564c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2570cb20be35SHong Zhang PetscFunctionReturn(0); 2571cb20be35SHong Zhang } 2572cb20be35SHong Zhang 25736718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2574cb20be35SHong Zhang { 2575cb20be35SHong Zhang MPI_Comm comm; 2576baa3c1c6SHong Zhang PetscMPIInt size; 2577660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2578baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25796718818eSStefano Zampini PetscBool cisdense; 25800acaeb71SStefano Zampini PetscInt i; 25810acaeb71SStefano Zampini const PetscInt *ranges; 2582cb20be35SHong Zhang 2583cb20be35SHong Zhang PetscFunctionBegin; 25846718818eSStefano Zampini MatCheckProduct(C,3); 25855f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2587cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 258898921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2589cb20be35SHong Zhang } 2590cb20be35SHong Zhang 25914222ddf1SHong Zhang /* create matrix product C */ 25929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25946718818eSStefano Zampini if (!cisdense) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 25966718818eSStefano Zampini } 25979566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2598baa3c1c6SHong Zhang 25994222ddf1SHong Zhang /* create data structure for reuse C */ 26009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26019566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26024222ddf1SHong Zhang cM = C->rmap->N; 26039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26050acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2606baa3c1c6SHong Zhang 26076718818eSStefano Zampini C->product->data = atb; 26086718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2609cb20be35SHong Zhang PetscFunctionReturn(0); 2610cb20be35SHong Zhang } 2611cb20be35SHong Zhang 26124222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2613cb20be35SHong Zhang { 2614cc48ffa7SToby Isaac MPI_Comm comm; 2615cc48ffa7SToby Isaac PetscMPIInt i, size; 2616cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2617cc48ffa7SToby Isaac PetscMPIInt tag; 26184222ddf1SHong Zhang PetscInt alg; 2619cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26204222ddf1SHong Zhang Mat_Product *product = C->product; 26214222ddf1SHong Zhang PetscBool flg; 2622cc48ffa7SToby Isaac 2623cc48ffa7SToby Isaac PetscFunctionBegin; 26246718818eSStefano Zampini MatCheckProduct(C,4); 26255f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26264222ddf1SHong Zhang /* check local size of A and B */ 26275f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2628cc48ffa7SToby Isaac 26299566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2630637a0070SStefano Zampini alg = flg ? 0 : 1; 2631cc48ffa7SToby Isaac 26324222ddf1SHong Zhang /* setup matrix product C */ 26339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26349566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26359566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26374222ddf1SHong Zhang 26384222ddf1SHong Zhang /* create data structure for reuse C */ 26399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26419566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2642cc48ffa7SToby Isaac abt->tag = tag; 2643faa55883SToby Isaac abt->alg = alg; 2644faa55883SToby Isaac switch (alg) { 26454222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2646cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2647cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26489566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2649faa55883SToby Isaac break; 26504222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2653faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2654faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2655faa55883SToby Isaac break; 2656faa55883SToby Isaac } 2657cc48ffa7SToby Isaac 26586718818eSStefano Zampini C->product->data = abt; 26596718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26604222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2661cc48ffa7SToby Isaac PetscFunctionReturn(0); 2662cc48ffa7SToby Isaac } 2663cc48ffa7SToby Isaac 2664faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2665cc48ffa7SToby Isaac { 2666cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26676718818eSStefano Zampini Mat_MatTransMultDense *abt; 2668cc48ffa7SToby Isaac MPI_Comm comm; 2669cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2670f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2671cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2672cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2673637a0070SStefano Zampini const PetscScalar *av,*bv; 267423fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2675cc48ffa7SToby Isaac MPI_Request reqs[2]; 2676cc48ffa7SToby Isaac const PetscInt *ranges; 2677cc48ffa7SToby Isaac 2678cc48ffa7SToby Isaac PetscFunctionBegin; 26796718818eSStefano Zampini MatCheckProduct(C,3); 26805f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26816718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 26849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 26869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 26879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 26889566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 26899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 26909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 26919566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 26929566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 26939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 26949566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2695cc48ffa7SToby Isaac bn = B->rmap->n; 2696637a0070SStefano Zampini if (blda == bn) { 2697637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2698cc48ffa7SToby Isaac } else { 2699cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2700cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2701cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2702637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2703cc48ffa7SToby Isaac } 2704cc48ffa7SToby Isaac } 2705cc48ffa7SToby Isaac } 2706cc48ffa7SToby Isaac if (size > 1) { 2707cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2708cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2709cc48ffa7SToby Isaac } else { 2710cc48ffa7SToby Isaac sendto = recvfrom = 0; 2711cc48ffa7SToby Isaac } 27129566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2714cc48ffa7SToby Isaac recvisfrom = rank; 2715cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2716cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2717cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2718cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2719cc48ffa7SToby Isaac 2720cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2721cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2722cc48ffa7SToby Isaac sendsiz = cK * bn; 2723cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2724cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2727cc48ffa7SToby Isaac } 2728cc48ffa7SToby Isaac 2729cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 273150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2732cc48ffa7SToby Isaac 2733cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2734cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2736cc48ffa7SToby Isaac } 2737cc48ffa7SToby Isaac bn = nextbn; 2738cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2739cc48ffa7SToby Isaac sendbuf = recvbuf; 2740cc48ffa7SToby Isaac } 27419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27429566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27439566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2746cc48ffa7SToby Isaac PetscFunctionReturn(0); 2747cc48ffa7SToby Isaac } 2748cc48ffa7SToby Isaac 2749faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2750faa55883SToby Isaac { 2751faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27526718818eSStefano Zampini Mat_MatTransMultDense *abt; 2753faa55883SToby Isaac MPI_Comm comm; 2754637a0070SStefano Zampini PetscMPIInt size; 2755637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2756637a0070SStefano Zampini const PetscScalar *av,*bv; 2757637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2758faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2759637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2760faa55883SToby Isaac 2761faa55883SToby Isaac PetscFunctionBegin; 27626718818eSStefano Zampini MatCheckProduct(C,3); 27635f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27646718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27699566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27719566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27729566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27739566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27749566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2775faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2776faa55883SToby Isaac bn = B->rmap->n; 2777faa55883SToby Isaac sendbuf = abt->buf[0]; 2778faa55883SToby Isaac recvbuf = abt->buf[1]; 2779faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2780faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2781637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2782faa55883SToby Isaac } 2783faa55883SToby Isaac } 27849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27879566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 27889566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 278950ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27919566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2795faa55883SToby Isaac PetscFunctionReturn(0); 2796faa55883SToby Isaac } 2797faa55883SToby Isaac 2798faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2799faa55883SToby Isaac { 28006718818eSStefano Zampini Mat_MatTransMultDense *abt; 2801faa55883SToby Isaac 2802faa55883SToby Isaac PetscFunctionBegin; 28036718818eSStefano Zampini MatCheckProduct(C,3); 28045f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28056718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2806faa55883SToby Isaac switch (abt->alg) { 2807faa55883SToby Isaac case 1: 28089566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2809faa55883SToby Isaac break; 2810faa55883SToby Isaac default: 28119566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2812faa55883SToby Isaac break; 2813faa55883SToby Isaac } 2814faa55883SToby Isaac PetscFunctionReturn(0); 2815faa55883SToby Isaac } 2816faa55883SToby Isaac 28176718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2818320f2790SHong Zhang { 28196718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2820320f2790SHong Zhang 2821320f2790SHong Zhang PetscFunctionBegin; 28229566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28259566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2826320f2790SHong Zhang PetscFunctionReturn(0); 2827320f2790SHong Zhang } 2828320f2790SHong Zhang 28295242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2830320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2831320f2790SHong Zhang { 28326718818eSStefano Zampini Mat_MatMultDense *ab; 2833320f2790SHong Zhang 2834320f2790SHong Zhang PetscFunctionBegin; 28356718818eSStefano Zampini MatCheckProduct(C,3); 28365f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28376718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28389566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28399566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28409566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28419566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2842320f2790SHong Zhang PetscFunctionReturn(0); 2843320f2790SHong Zhang } 2844320f2790SHong Zhang 28456718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2846320f2790SHong Zhang { 2847320f2790SHong Zhang Mat Ae,Be,Ce; 2848320f2790SHong Zhang Mat_MatMultDense *ab; 2849320f2790SHong Zhang 2850320f2790SHong Zhang PetscFunctionBegin; 28516718818eSStefano Zampini MatCheckProduct(C,4); 28525f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28534222ddf1SHong Zhang /* check local size of A and B */ 2854320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 285598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2856320f2790SHong Zhang } 2857320f2790SHong Zhang 28584222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28599566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28619566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28629566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28639566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2864320f2790SHong Zhang 28659566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28679566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28689566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28699566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2870320f2790SHong Zhang 28714222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28739566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28744222ddf1SHong Zhang 28754222ddf1SHong Zhang /* setup C */ 28769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28779566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 28789566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2879320f2790SHong Zhang 2880320f2790SHong Zhang /* create data structure for reuse Cdense */ 28819566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2882320f2790SHong Zhang ab->Ae = Ae; 2883320f2790SHong Zhang ab->Be = Be; 2884320f2790SHong Zhang ab->Ce = Ce; 28856718818eSStefano Zampini 28866718818eSStefano Zampini C->product->data = ab; 28876718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28884222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2889320f2790SHong Zhang PetscFunctionReturn(0); 2890320f2790SHong Zhang } 28914222ddf1SHong Zhang #endif 28924222ddf1SHong Zhang /* ----------------------------------------------- */ 28934222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28944222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2895320f2790SHong Zhang { 2896320f2790SHong Zhang PetscFunctionBegin; 28974222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28984222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2899320f2790SHong Zhang PetscFunctionReturn(0); 2900320f2790SHong Zhang } 29015242a7b1SHong Zhang #endif 290286aefd0dSHong Zhang 29034222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29044222ddf1SHong Zhang { 29054222ddf1SHong Zhang Mat_Product *product = C->product; 29064222ddf1SHong Zhang Mat A = product->A,B=product->B; 29074222ddf1SHong Zhang 29084222ddf1SHong Zhang PetscFunctionBegin; 29094222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 291098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29116718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29126718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29134222ddf1SHong Zhang PetscFunctionReturn(0); 29144222ddf1SHong Zhang } 29154222ddf1SHong Zhang 29164222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29174222ddf1SHong Zhang { 29184222ddf1SHong Zhang Mat_Product *product = C->product; 29194222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29204222ddf1SHong Zhang PetscInt alg,nalg = 2; 29214222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29224222ddf1SHong Zhang 29234222ddf1SHong Zhang PetscFunctionBegin; 29244222ddf1SHong Zhang /* Set default algorithm */ 29254222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29274222ddf1SHong Zhang if (flg) { 29289566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29294222ddf1SHong Zhang } 29304222ddf1SHong Zhang 29314222ddf1SHong Zhang /* Get runtime option */ 29324222ddf1SHong Zhang if (product->api_user) { 2933d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29349566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2935d0609cedSBarry Smith PetscOptionsEnd(); 29364222ddf1SHong Zhang } else { 2937d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29389566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2939d0609cedSBarry Smith PetscOptionsEnd(); 29404222ddf1SHong Zhang } 29414222ddf1SHong Zhang if (flg) { 29429566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29434222ddf1SHong Zhang } 29444222ddf1SHong Zhang 29454222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29464222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29474222ddf1SHong Zhang PetscFunctionReturn(0); 29484222ddf1SHong Zhang } 29494222ddf1SHong Zhang 29504222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29514222ddf1SHong Zhang { 29524222ddf1SHong Zhang Mat_Product *product = C->product; 29534222ddf1SHong Zhang 29544222ddf1SHong Zhang PetscFunctionBegin; 29554222ddf1SHong Zhang switch (product->type) { 29564222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29574222ddf1SHong Zhang case MATPRODUCT_AB: 29589566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29594222ddf1SHong Zhang break; 29604222ddf1SHong Zhang #endif 29614222ddf1SHong Zhang case MATPRODUCT_AtB: 29629566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29634222ddf1SHong Zhang break; 29644222ddf1SHong Zhang case MATPRODUCT_ABt: 29659566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29664222ddf1SHong Zhang break; 29676718818eSStefano Zampini default: 29686718818eSStefano Zampini break; 29694222ddf1SHong Zhang } 29704222ddf1SHong Zhang PetscFunctionReturn(0); 29714222ddf1SHong Zhang } 2972