1be1d678aSKris Buschelman 267e560aaSBarry Smith /* 367e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 467e560aaSBarry Smith */ 5289bc588SBarry Smith 6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <petscblaslapack.h> 8289bc588SBarry Smith 96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> 10b2573a8aSBarry Smith 11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian) 128c178816SStefano Zampini { 138c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 148c178816SStefano Zampini PetscInt j, k, n = A->rmap->n; 15ca15aa20SStefano Zampini PetscScalar *v; 168c178816SStefano Zampini 178c178816SStefano Zampini PetscFunctionBegin; 1808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix"); 199566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 208c178816SStefano Zampini if (!hermitian) { 218c178816SStefano Zampini for (k=0;k<n;k++) { 228c178816SStefano Zampini for (j=k;j<n;j++) { 23ca15aa20SStefano Zampini v[j*mat->lda + k] = v[k*mat->lda + j]; 248c178816SStefano Zampini } 258c178816SStefano Zampini } 268c178816SStefano Zampini } else { 278c178816SStefano Zampini for (k=0;k<n;k++) { 288c178816SStefano Zampini for (j=k;j<n;j++) { 29ca15aa20SStefano Zampini v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]); 308c178816SStefano Zampini } 318c178816SStefano Zampini } 328c178816SStefano Zampini } 339566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 348c178816SStefano Zampini PetscFunctionReturn(0); 358c178816SStefano Zampini } 368c178816SStefano Zampini 3705709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A) 388c178816SStefano Zampini { 398c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 408c178816SStefano Zampini PetscBLASInt info,n; 418c178816SStefano Zampini 428c178816SStefano Zampini PetscFunctionBegin; 438c178816SStefano Zampini if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 449566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 458c178816SStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 4628b400f6SJacob Faibussowitsch PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 478c178816SStefano Zampini if (!mat->fwork) { 488c178816SStefano Zampini mat->lfwork = n; 499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork)); 509566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt))); 518c178816SStefano Zampini } 529566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 538c178816SStefano Zampini PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 549566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0)); 568c178816SStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 578c178816SStefano Zampini if (A->spd) { 589566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 598c178816SStefano Zampini PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info)); 609566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 619566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_TRUE)); 628c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX) 638c178816SStefano Zampini } else if (A->hermitian) { 6428b400f6SJacob Faibussowitsch PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 6528b400f6SJacob Faibussowitsch PetscCheck(mat->fwork,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 669566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 678c178816SStefano Zampini PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 689566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 699566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_TRUE)); 708c178816SStefano Zampini #endif 718c178816SStefano Zampini } else { /* symmetric case */ 7228b400f6SJacob Faibussowitsch PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 7328b400f6SJacob Faibussowitsch PetscCheck(mat->fwork,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 749566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 758c178816SStefano Zampini PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 769566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 779566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_FALSE)); 788c178816SStefano Zampini } 7928b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %" PetscInt_FMT,(PetscInt)info-1); 809566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0)); 818c178816SStefano Zampini } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 828c178816SStefano Zampini 838c178816SStefano Zampini A->ops->solve = NULL; 848c178816SStefano Zampini A->ops->matsolve = NULL; 858c178816SStefano Zampini A->ops->solvetranspose = NULL; 868c178816SStefano Zampini A->ops->matsolvetranspose = NULL; 878c178816SStefano Zampini A->ops->solveadd = NULL; 888c178816SStefano Zampini A->ops->solvetransposeadd = NULL; 898c178816SStefano Zampini A->factortype = MAT_FACTOR_NONE; 909566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 918c178816SStefano Zampini PetscFunctionReturn(0); 928c178816SStefano Zampini } 938c178816SStefano Zampini 943f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 953f49a652SStefano Zampini { 963f49a652SStefano Zampini Mat_SeqDense *l = (Mat_SeqDense*)A->data; 973f49a652SStefano Zampini PetscInt m = l->lda, n = A->cmap->n,r = A->rmap->n, i,j; 98ca15aa20SStefano Zampini PetscScalar *slot,*bb,*v; 993f49a652SStefano Zampini const PetscScalar *xx; 1003f49a652SStefano Zampini 1013f49a652SStefano Zampini PetscFunctionBegin; 10276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1033f49a652SStefano Zampini for (i=0; i<N; i++) { 10408401ef6SPierre Jolivet PetscCheck(rows[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 10508401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT,rows[i],A->rmap->n); 10608401ef6SPierre Jolivet PetscCheck(rows[i] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %" PetscInt_FMT " requested to be zeroed greater than or equal number of cols %" PetscInt_FMT,rows[i],A->cmap->n); 1073f49a652SStefano Zampini } 10876bd3646SJed Brown } 109ca15aa20SStefano Zampini if (!N) PetscFunctionReturn(0); 1103f49a652SStefano Zampini 1113f49a652SStefano Zampini /* fix right hand side if needed */ 1123f49a652SStefano Zampini if (x && b) { 1136c4d906cSStefano Zampini Vec xt; 1146c4d906cSStefano Zampini 11508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 1169566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x,&xt)); 1179566063dSJacob Faibussowitsch PetscCall(VecCopy(x,xt)); 1189566063dSJacob Faibussowitsch PetscCall(VecScale(xt,-1.0)); 1199566063dSJacob Faibussowitsch PetscCall(MatMultAdd(A,xt,b,b)); 1209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xt)); 1219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 1229566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 1233f49a652SStefano Zampini for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 1249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 1259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 1263f49a652SStefano Zampini } 1273f49a652SStefano Zampini 1289566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 1293f49a652SStefano Zampini for (i=0; i<N; i++) { 130ca15aa20SStefano Zampini slot = v + rows[i]*m; 1319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(slot,r)); 1323f49a652SStefano Zampini } 1333f49a652SStefano Zampini for (i=0; i<N; i++) { 134ca15aa20SStefano Zampini slot = v + rows[i]; 1353f49a652SStefano Zampini for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 1363f49a652SStefano Zampini } 1373f49a652SStefano Zampini if (diag != 0.0) { 13808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 1393f49a652SStefano Zampini for (i=0; i<N; i++) { 140ca15aa20SStefano Zampini slot = v + (m+1)*rows[i]; 1413f49a652SStefano Zampini *slot = diag; 1423f49a652SStefano Zampini } 1433f49a652SStefano Zampini } 1449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 1453f49a652SStefano Zampini PetscFunctionReturn(0); 1463f49a652SStefano Zampini } 1473f49a652SStefano Zampini 148abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C) 149abc3b08eSStefano Zampini { 150abc3b08eSStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)(C->data); 151abc3b08eSStefano Zampini 152abc3b08eSStefano Zampini PetscFunctionBegin; 153ca15aa20SStefano Zampini if (c->ptapwork) { 1549566063dSJacob Faibussowitsch PetscCall((*C->ops->matmultnumeric)(A,P,c->ptapwork)); 1559566063dSJacob Faibussowitsch PetscCall((*C->ops->transposematmultnumeric)(P,c->ptapwork,C)); 1564222ddf1SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first"); 157abc3b08eSStefano Zampini PetscFunctionReturn(0); 158abc3b08eSStefano Zampini } 159abc3b08eSStefano Zampini 1604222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C) 161abc3b08eSStefano Zampini { 162abc3b08eSStefano Zampini Mat_SeqDense *c; 1637a3c3d58SStefano Zampini PetscBool cisdense; 164abc3b08eSStefano Zampini 165abc3b08eSStefano Zampini PetscFunctionBegin; 1669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N)); 1679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"")); 1687a3c3d58SStefano Zampini if (!cisdense) { 1697a3c3d58SStefano Zampini PetscBool flg; 1707a3c3d58SStefano Zampini 1719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg)); 1729566063dSJacob Faibussowitsch PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE)); 1737a3c3d58SStefano Zampini } 1749566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 1754222ddf1SHong Zhang c = (Mat_SeqDense*)C->data; 1769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork)); 1779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N)); 1789566063dSJacob Faibussowitsch PetscCall(MatSetType(c->ptapwork,((PetscObject)C)->type_name)); 1799566063dSJacob Faibussowitsch PetscCall(MatSetUp(c->ptapwork)); 180abc3b08eSStefano Zampini PetscFunctionReturn(0); 181abc3b08eSStefano Zampini } 182abc3b08eSStefano Zampini 183cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 184b49cda9fSStefano Zampini { 185a13144ffSStefano Zampini Mat B = NULL; 186b49cda9fSStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 187b49cda9fSStefano Zampini Mat_SeqDense *b; 188b49cda9fSStefano Zampini PetscInt *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i; 1892e5835c6SStefano Zampini const MatScalar *av; 190a13144ffSStefano Zampini PetscBool isseqdense; 191b49cda9fSStefano Zampini 192b49cda9fSStefano Zampini PetscFunctionBegin; 193a13144ffSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 1949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense)); 19528b400f6SJacob Faibussowitsch PetscCheck(isseqdense,PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name); 196a13144ffSStefano Zampini } 197a13144ffSStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 1999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,n,m,n)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQDENSE)); 2019566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,NULL)); 202b49cda9fSStefano Zampini b = (Mat_SeqDense*)(B->data); 203a13144ffSStefano Zampini } else { 204a13144ffSStefano Zampini b = (Mat_SeqDense*)((*newmat)->data); 2059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->v,m*n)); 206a13144ffSStefano Zampini } 2079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A,&av)); 208b49cda9fSStefano Zampini for (i=0; i<m; i++) { 209b49cda9fSStefano Zampini PetscInt j; 210b49cda9fSStefano Zampini for (j=0;j<ai[1]-ai[0];j++) { 211b49cda9fSStefano Zampini b->v[*aj*m+i] = *av; 212b49cda9fSStefano Zampini aj++; 213b49cda9fSStefano Zampini av++; 214b49cda9fSStefano Zampini } 215b49cda9fSStefano Zampini ai++; 216b49cda9fSStefano Zampini } 2179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A,&av)); 218b49cda9fSStefano Zampini 219511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 2219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 2229566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 223b49cda9fSStefano Zampini } else { 224a13144ffSStefano Zampini if (B) *newmat = B; 2259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY)); 2269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY)); 227b49cda9fSStefano Zampini } 228b49cda9fSStefano Zampini PetscFunctionReturn(0); 229b49cda9fSStefano Zampini } 230b49cda9fSStefano Zampini 231cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 2326a63e612SBarry Smith { 2336d4ec7b0SPierre Jolivet Mat B = NULL; 2346a63e612SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2359399e1b8SMatthew G. Knepley PetscInt i, j; 2369399e1b8SMatthew G. Knepley PetscInt *rows, *nnz; 2379399e1b8SMatthew G. Knepley MatScalar *aa = a->v, *vals; 2386a63e612SBarry Smith 2396a63e612SBarry Smith PetscFunctionBegin; 2409566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals)); 2416d4ec7b0SPierre Jolivet if (reuse != MAT_REUSE_MATRIX) { 2429566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 2439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 2449566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQAIJ)); 2459399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2466d4ec7b0SPierre Jolivet for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i]; 2476a63e612SBarry Smith aa += a->lda; 2486a63e612SBarry Smith } 2499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz)); 2506d4ec7b0SPierre Jolivet } else B = *newmat; 2519399e1b8SMatthew G. Knepley aa = a->v; 2529399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2539399e1b8SMatthew G. Knepley PetscInt numRows = 0; 2546d4ec7b0SPierre Jolivet for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];} 2559566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES)); 2569399e1b8SMatthew G. Knepley aa += a->lda; 2579399e1b8SMatthew G. Knepley } 2589566063dSJacob Faibussowitsch PetscCall(PetscFree3(rows,nnz,vals)); 2599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 2609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 2616a63e612SBarry Smith 262511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2639566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 2646d4ec7b0SPierre Jolivet } else if (reuse != MAT_REUSE_MATRIX) *newmat = B; 2656a63e612SBarry Smith PetscFunctionReturn(0); 2666a63e612SBarry Smith } 2676a63e612SBarry Smith 268ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 2691987afe7SBarry Smith { 2701987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 271ca15aa20SStefano Zampini const PetscScalar *xv; 272ca15aa20SStefano Zampini PetscScalar *yv; 27323fff9afSBarry Smith PetscBLASInt N,m,ldax = 0,lday = 0,one = 1; 2743a40ed3dSBarry Smith 2753a40ed3dSBarry Smith PetscFunctionBegin; 2769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(X,&xv)); 2779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(Y,&yv)); 2789566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n*X->cmap->n,&N)); 2799566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n,&m)); 2809566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->lda,&ldax)); 2819566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(y->lda,&lday)); 282a5ce6ee0Svictorle if (ldax>m || lday>m) { 283ca15aa20SStefano Zampini PetscInt j; 284ca15aa20SStefano Zampini 285d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 286ca15aa20SStefano Zampini PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one)); 287a5ce6ee0Svictorle } 288a5ce6ee0Svictorle } else { 289ca15aa20SStefano Zampini PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one)); 290a5ce6ee0Svictorle } 2919566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(X,&xv)); 2929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(Y,&yv)); 2939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(2.0*N-1,0))); 2943a40ed3dSBarry Smith PetscFunctionReturn(0); 2951987afe7SBarry Smith } 2961987afe7SBarry Smith 297e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 298289bc588SBarry Smith { 299ca15aa20SStefano Zampini PetscLogDouble N = A->rmap->n*A->cmap->n; 3003a40ed3dSBarry Smith 3013a40ed3dSBarry Smith PetscFunctionBegin; 3024e220ebcSLois Curfman McInnes info->block_size = 1.0; 303ca15aa20SStefano Zampini info->nz_allocated = N; 304ca15aa20SStefano Zampini info->nz_used = N; 305ca15aa20SStefano Zampini info->nz_unneeded = 0; 306ca15aa20SStefano Zampini info->assemblies = A->num_ass; 3074e220ebcSLois Curfman McInnes info->mallocs = 0; 3087adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 3094e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 3104e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 3114e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 3123a40ed3dSBarry Smith PetscFunctionReturn(0); 313289bc588SBarry Smith } 314289bc588SBarry Smith 315637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 31680cd9d93SLois Curfman McInnes { 317273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 318ca15aa20SStefano Zampini PetscScalar *v; 31923fff9afSBarry Smith PetscBLASInt one = 1,j,nz,lda = 0; 32080cd9d93SLois Curfman McInnes 3213a40ed3dSBarry Smith PetscFunctionBegin; 3229566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 3239566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->lda,&lda)); 324d0f46423SBarry Smith if (lda>A->rmap->n) { 3259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&nz)); 326d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 327ca15aa20SStefano Zampini PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one)); 328a5ce6ee0Svictorle } 329a5ce6ee0Svictorle } else { 3309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz)); 331ca15aa20SStefano Zampini PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one)); 332a5ce6ee0Svictorle } 333*04cbc005SJose E. Roman PetscCall(PetscLogFlops(A->rmap->n*A->cmap->n)); 3349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 3353a40ed3dSBarry Smith PetscFunctionReturn(0); 33680cd9d93SLois Curfman McInnes } 33780cd9d93SLois Curfman McInnes 3382f605a99SJose E. Roman PetscErrorCode MatShift_SeqDense(Mat A,PetscScalar alpha) 3392f605a99SJose E. Roman { 3402f605a99SJose E. Roman Mat_SeqDense *a = (Mat_SeqDense*)A->data; 3412f605a99SJose E. Roman PetscScalar *v; 3422f605a99SJose E. Roman PetscInt j,k; 3432f605a99SJose E. Roman 3442f605a99SJose E. Roman PetscFunctionBegin; 3452f605a99SJose E. Roman PetscCall(MatDenseGetArray(A,&v)); 3462f605a99SJose E. Roman k = PetscMin(A->rmap->n,A->cmap->n); 3472f605a99SJose E. Roman for (j=0; j<k; j++) v[j+j*a->lda] += alpha; 3482f605a99SJose E. Roman PetscCall(PetscLogFlops(k)); 3492f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(A,&v)); 3502f605a99SJose E. Roman PetscFunctionReturn(0); 3512f605a99SJose E. Roman } 3522f605a99SJose E. Roman 353e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool *fl) 3541cbb95d3SBarry Smith { 3551cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 356ca15aa20SStefano Zampini PetscInt i,j,m = A->rmap->n,N = a->lda; 357ca15aa20SStefano Zampini const PetscScalar *v; 3581cbb95d3SBarry Smith 3591cbb95d3SBarry Smith PetscFunctionBegin; 3601cbb95d3SBarry Smith *fl = PETSC_FALSE; 361d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 3629566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&v)); 3631cbb95d3SBarry Smith for (i=0; i<m; i++) { 364ca15aa20SStefano Zampini for (j=i; j<m; j++) { 365637a0070SStefano Zampini if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) { 366637a0070SStefano Zampini goto restore; 3671cbb95d3SBarry Smith } 3681cbb95d3SBarry Smith } 369637a0070SStefano Zampini } 3701cbb95d3SBarry Smith *fl = PETSC_TRUE; 371637a0070SStefano Zampini restore: 3729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&v)); 373637a0070SStefano Zampini PetscFunctionReturn(0); 374637a0070SStefano Zampini } 375637a0070SStefano Zampini 376637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool *fl) 377637a0070SStefano Zampini { 378637a0070SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 379637a0070SStefano Zampini PetscInt i,j,m = A->rmap->n,N = a->lda; 380637a0070SStefano Zampini const PetscScalar *v; 381637a0070SStefano Zampini 382637a0070SStefano Zampini PetscFunctionBegin; 383637a0070SStefano Zampini *fl = PETSC_FALSE; 384637a0070SStefano Zampini if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 3859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&v)); 386637a0070SStefano Zampini for (i=0; i<m; i++) { 387637a0070SStefano Zampini for (j=i; j<m; j++) { 388637a0070SStefano Zampini if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) { 389637a0070SStefano Zampini goto restore; 390637a0070SStefano Zampini } 391637a0070SStefano Zampini } 392637a0070SStefano Zampini } 393637a0070SStefano Zampini *fl = PETSC_TRUE; 394637a0070SStefano Zampini restore: 3959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&v)); 3961cbb95d3SBarry Smith PetscFunctionReturn(0); 3971cbb95d3SBarry Smith } 3981cbb95d3SBarry Smith 399ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 400b24902e0SBarry Smith { 401ca15aa20SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 40223fc5dcaSStefano Zampini PetscInt lda = (PetscInt)mat->lda,j,m,nlda = lda; 40375f6d85dSStefano Zampini PetscBool isdensecpu; 404b24902e0SBarry Smith 405b24902e0SBarry Smith PetscFunctionBegin; 4069566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&newi->rmap)); 4079566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&newi->cmap)); 40823fc5dcaSStefano Zampini if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */ 4099566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(newi,lda)); 41023fc5dcaSStefano Zampini } 4119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)newi,MATSEQDENSE,&isdensecpu)); 4129566063dSJacob Faibussowitsch if (isdensecpu) PetscCall(MatSeqDenseSetPreallocation(newi,NULL)); 413b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 414ca15aa20SStefano Zampini const PetscScalar *av; 415ca15aa20SStefano Zampini PetscScalar *v; 416ca15aa20SStefano Zampini 4179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&av)); 4189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(newi,&v)); 4199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newi,&nlda)); 420d0f46423SBarry Smith m = A->rmap->n; 42123fc5dcaSStefano Zampini if (lda>m || nlda>m) { 422d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 4239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v+j*nlda,av+j*lda,m)); 424b24902e0SBarry Smith } 425b24902e0SBarry Smith } else { 4269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v,av,A->rmap->n*A->cmap->n)); 427b24902e0SBarry Smith } 4289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(newi,&v)); 4299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&av)); 430b24902e0SBarry Smith } 431b24902e0SBarry Smith PetscFunctionReturn(0); 432b24902e0SBarry Smith } 433b24902e0SBarry Smith 434ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 43502cad45dSBarry Smith { 4363a40ed3dSBarry Smith PetscFunctionBegin; 4379566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),newmat)); 4389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n)); 4399566063dSJacob Faibussowitsch PetscCall(MatSetType(*newmat,((PetscObject)A)->type_name)); 4409566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues)); 441b24902e0SBarry Smith PetscFunctionReturn(0); 442b24902e0SBarry Smith } 443b24902e0SBarry Smith 444bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 445289bc588SBarry Smith { 446c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4474396437dSToby Isaac PetscBLASInt info; 44867e560aaSBarry Smith 4493a40ed3dSBarry Smith PetscFunctionBegin; 4509566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 4514396437dSToby Isaac PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 4529566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 45328b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve"); 4549566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs*(2.0*m*m - m))); 4554396437dSToby Isaac PetscFunctionReturn(0); 4564396437dSToby Isaac } 4574396437dSToby Isaac 4584396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat); 4594396437dSToby Isaac 460bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 4614396437dSToby Isaac { 4624396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4634396437dSToby Isaac PetscBLASInt info; 4644396437dSToby Isaac 4654396437dSToby Isaac PetscFunctionBegin; 466a49dc2a2SStefano Zampini if (A->spd) { 4679566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 4689566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 4698b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info)); 4709566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 47128b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve"); 4729566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 473a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 474a49dc2a2SStefano Zampini } else if (A->hermitian) { 4759566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 4769566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 477a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 4789566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 47928b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve"); 4809566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 481a49dc2a2SStefano Zampini #endif 482a49dc2a2SStefano Zampini } else { /* symmetric case */ 4839566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 484a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 4859566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 48628b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve"); 487a49dc2a2SStefano Zampini } 4889566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs*(2.0*m*m - m))); 4894396437dSToby Isaac PetscFunctionReturn(0); 4904396437dSToby Isaac } 49185e2c93fSHong Zhang 492bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 4934396437dSToby Isaac { 4944396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4954396437dSToby Isaac PetscBLASInt info; 4964396437dSToby Isaac char trans; 4974396437dSToby Isaac 4984396437dSToby Isaac PetscFunctionBegin; 4994905a7bcSToby Isaac if (PetscDefined(USE_COMPLEX)) { 5004905a7bcSToby Isaac trans = 'C'; 5014905a7bcSToby Isaac } else { 5024905a7bcSToby Isaac trans = 'T'; 5034905a7bcSToby Isaac } 5049566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 505bf5a80bcSToby Isaac PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&ldx,mat->fwork,&mat->lfwork,&info)); 5069566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 50728b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform"); 5089566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 509bf5a80bcSToby Isaac PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&ldx,&info)); 5109566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 51128b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve"); 5124905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 5134905a7bcSToby Isaac for (PetscInt i = mat->rank; i < k; i++) { 514bf5a80bcSToby Isaac x[j*ldx + i] = 0.; 5154905a7bcSToby Isaac } 5164905a7bcSToby Isaac } 5179566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)))); 5184905a7bcSToby Isaac PetscFunctionReturn(0); 5194905a7bcSToby Isaac } 5204905a7bcSToby Isaac 521bf5a80bcSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 5224905a7bcSToby Isaac { 5234396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 5244396437dSToby Isaac PetscBLASInt info; 5254396437dSToby Isaac 5264396437dSToby Isaac PetscFunctionBegin; 5274396437dSToby Isaac if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) { 5289566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 529bf5a80bcSToby Isaac PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&ldx,&info)); 5309566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 53128b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve"); 5329566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 5339566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 534bf5a80bcSToby Isaac PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&ldx,mat->fwork,&mat->lfwork,&info)); 5359566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 53628b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform"); 5379566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 5384396437dSToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve"); 5399566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)))); 5404396437dSToby Isaac PetscFunctionReturn(0); 5414396437dSToby Isaac } 5424396437dSToby Isaac 5434396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 5444396437dSToby Isaac { 5454396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 5464905a7bcSToby Isaac PetscScalar *y; 5474905a7bcSToby Isaac PetscBLASInt m=0, k=0; 5484905a7bcSToby Isaac 5494905a7bcSToby Isaac PetscFunctionBegin; 5509566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 5519566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&k)); 5524905a7bcSToby Isaac if (k < m) { 5539566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, mat->qrrhs)); 5549566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->qrrhs,&y)); 5554905a7bcSToby Isaac } else { 5569566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, yy)); 5579566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&y)); 5584905a7bcSToby Isaac } 5594396437dSToby Isaac *_y = y; 5604396437dSToby Isaac *_k = k; 5614396437dSToby Isaac *_m = m; 5624396437dSToby Isaac PetscFunctionReturn(0); 5634396437dSToby Isaac } 5644396437dSToby Isaac 5654396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 5664396437dSToby Isaac { 5674396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 56842e9364cSSatish Balay PetscScalar *y = NULL; 5694396437dSToby Isaac PetscBLASInt m, k; 5704396437dSToby Isaac 5714396437dSToby Isaac PetscFunctionBegin; 5724396437dSToby Isaac y = *_y; 5734396437dSToby Isaac *_y = NULL; 5744396437dSToby Isaac k = *_k; 5754396437dSToby Isaac m = *_m; 5764905a7bcSToby Isaac if (k < m) { 5774905a7bcSToby Isaac PetscScalar *yv; 5789566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&yv)); 5799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(yv, y, k)); 5809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&yv)); 5819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->qrrhs, &y)); 5824905a7bcSToby Isaac } else { 5839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&y)); 5844905a7bcSToby Isaac } 5854905a7bcSToby Isaac PetscFunctionReturn(0); 5864905a7bcSToby Isaac } 5874905a7bcSToby Isaac 5884396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy) 5894396437dSToby Isaac { 59042e9364cSSatish Balay PetscScalar *y = NULL; 59142e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 5924396437dSToby Isaac 5934396437dSToby Isaac PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 5959566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE)); 5969566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 5974396437dSToby Isaac PetscFunctionReturn(0); 5984396437dSToby Isaac } 5994396437dSToby Isaac 6004396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy) 6014396437dSToby Isaac { 60242e9364cSSatish Balay PetscScalar *y = NULL; 60342e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6044396437dSToby Isaac 6054396437dSToby Isaac PetscFunctionBegin; 6069566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6079566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE)); 6089566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6094396437dSToby Isaac PetscFunctionReturn(0); 6104396437dSToby Isaac } 6114396437dSToby Isaac 6124396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 6134396437dSToby Isaac { 614e54beecaSStefano Zampini PetscScalar *y = NULL; 615e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6164396437dSToby Isaac 6174396437dSToby Isaac PetscFunctionBegin; 6189566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6199566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE)); 6209566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6214396437dSToby Isaac PetscFunctionReturn(0); 6224396437dSToby Isaac } 6234396437dSToby Isaac 6244396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 6254396437dSToby Isaac { 626e54beecaSStefano Zampini PetscScalar *y = NULL; 627e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6284396437dSToby Isaac 6294396437dSToby Isaac PetscFunctionBegin; 6309566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6319566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE)); 6329566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6334396437dSToby Isaac PetscFunctionReturn(0); 6344396437dSToby Isaac } 6354396437dSToby Isaac 6364396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy) 6374396437dSToby Isaac { 638e54beecaSStefano Zampini PetscScalar *y = NULL; 639e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6404396437dSToby Isaac 6414396437dSToby Isaac PetscFunctionBegin; 6429566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6439566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k)); 6449566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6454396437dSToby Isaac PetscFunctionReturn(0); 6464396437dSToby Isaac } 6474396437dSToby Isaac 6484396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy) 6494396437dSToby Isaac { 65042e9364cSSatish Balay PetscScalar *y = NULL; 65142e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6524396437dSToby Isaac 6534396437dSToby Isaac PetscFunctionBegin; 6549566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6559566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k)); 6569566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6574396437dSToby Isaac PetscFunctionReturn(0); 6584396437dSToby Isaac } 6594396437dSToby Isaac 660bf5a80bcSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 6614905a7bcSToby Isaac { 6624905a7bcSToby Isaac const PetscScalar *b; 6634396437dSToby Isaac PetscScalar *y; 664bf5a80bcSToby Isaac PetscInt n, _ldb, _ldx; 665bf5a80bcSToby Isaac PetscBLASInt nrhs=0,m=0,k=0,ldb=0,ldx=0,ldy=0; 6664905a7bcSToby Isaac 6674905a7bcSToby Isaac PetscFunctionBegin; 6686280eecaSJose E. Roman *_ldy=0; *_m=0; *_nrhs=0; *_k=0; *_y = NULL; 6699566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 6709566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&k)); 6719566063dSJacob Faibussowitsch PetscCall(MatGetSize(B,NULL,&n)); 6729566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(n,&nrhs)); 6739566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B,&_ldb)); 6749566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldb, &ldb)); 6759566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X,&_ldx)); 6769566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 677bf5a80bcSToby Isaac if (ldx < m) { 6789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&b)); 6799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrhs * m, &y)); 680bf5a80bcSToby Isaac if (ldb == m) { 6819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(y,b,ldb*nrhs)); 6824905a7bcSToby Isaac } else { 6834905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 6849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&y[j*m],&b[j*ldb],m)); 6854905a7bcSToby Isaac } 6864905a7bcSToby Isaac } 687bf5a80bcSToby Isaac ldy = m; 6889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&b)); 6894905a7bcSToby Isaac } else { 690bf5a80bcSToby Isaac if (ldb == ldx) { 6919566063dSJacob Faibussowitsch PetscCall(MatCopy(B, X, SAME_NONZERO_PATTERN)); 6929566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X,&y)); 6934905a7bcSToby Isaac } else { 6949566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X,&y)); 6959566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&b)); 6964905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 6979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&y[j*ldx],&b[j*ldb],m)); 6984905a7bcSToby Isaac } 6999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&b)); 7004905a7bcSToby Isaac } 701bf5a80bcSToby Isaac ldy = ldx; 7024905a7bcSToby Isaac } 7034396437dSToby Isaac *_y = y; 704bf5a80bcSToby Isaac *_ldy = ldy; 7054396437dSToby Isaac *_k = k; 7064396437dSToby Isaac *_m = m; 7074396437dSToby Isaac *_nrhs = nrhs; 7084396437dSToby Isaac PetscFunctionReturn(0); 7094396437dSToby Isaac } 7104396437dSToby Isaac 711bf5a80bcSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 7124396437dSToby Isaac { 7134396437dSToby Isaac PetscScalar *y; 714bf5a80bcSToby Isaac PetscInt _ldx; 715bf5a80bcSToby Isaac PetscBLASInt k,ldy,nrhs,ldx=0; 7164396437dSToby Isaac 7174396437dSToby Isaac PetscFunctionBegin; 7184396437dSToby Isaac y = *_y; 7194396437dSToby Isaac *_y = NULL; 7204396437dSToby Isaac k = *_k; 721bf5a80bcSToby Isaac ldy = *_ldy; 7224396437dSToby Isaac nrhs = *_nrhs; 7239566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X,&_ldx)); 7249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 725bf5a80bcSToby Isaac if (ldx != ldy) { 7264905a7bcSToby Isaac PetscScalar *xv; 7279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X,&xv)); 7284905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 7299566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&xv[j*ldx],&y[j*ldy],k)); 7304905a7bcSToby Isaac } 7319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X,&xv)); 7329566063dSJacob Faibussowitsch PetscCall(PetscFree(y)); 7334905a7bcSToby Isaac } else { 7349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X,&y)); 7354905a7bcSToby Isaac } 73685e2c93fSHong Zhang PetscFunctionReturn(0); 73785e2c93fSHong Zhang } 73885e2c93fSHong Zhang 7394396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X) 7404396437dSToby Isaac { 7414396437dSToby Isaac PetscScalar *y; 742bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7434396437dSToby Isaac 7444396437dSToby Isaac PetscFunctionBegin; 7459566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7469566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7479566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7484396437dSToby Isaac PetscFunctionReturn(0); 7494396437dSToby Isaac } 7504396437dSToby Isaac 7514396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X) 7524396437dSToby Isaac { 7534396437dSToby Isaac PetscScalar *y; 754bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7554396437dSToby Isaac 7564396437dSToby Isaac PetscFunctionBegin; 7579566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7589566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 7599566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7604396437dSToby Isaac PetscFunctionReturn(0); 7614396437dSToby Isaac } 7624396437dSToby Isaac 7634396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X) 7644396437dSToby Isaac { 7654396437dSToby Isaac PetscScalar *y; 766bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7674396437dSToby Isaac 7684396437dSToby Isaac PetscFunctionBegin; 7699566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7709566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7719566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7724396437dSToby Isaac PetscFunctionReturn(0); 7734396437dSToby Isaac } 7744396437dSToby Isaac 7754396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X) 7764396437dSToby Isaac { 7774396437dSToby Isaac PetscScalar *y; 778bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7794396437dSToby Isaac 7804396437dSToby Isaac PetscFunctionBegin; 7819566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7829566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 7839566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7844396437dSToby Isaac PetscFunctionReturn(0); 7854396437dSToby Isaac } 7864396437dSToby Isaac 7874396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X) 7884396437dSToby Isaac { 7894396437dSToby Isaac PetscScalar *y; 790bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7914396437dSToby Isaac 7924396437dSToby Isaac PetscFunctionBegin; 7939566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7949566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 7959566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7964396437dSToby Isaac PetscFunctionReturn(0); 7974396437dSToby Isaac } 7984396437dSToby Isaac 7994396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X) 8004396437dSToby Isaac { 8014396437dSToby Isaac PetscScalar *y; 802bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 8034396437dSToby Isaac 8044396437dSToby Isaac PetscFunctionBegin; 8059566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8069566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 8079566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8084396437dSToby Isaac PetscFunctionReturn(0); 8094396437dSToby Isaac } 8104396437dSToby Isaac 81100121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat); 81200121966SStefano Zampini 813db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 814db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 815db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 816ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 817db4efbfdSBarry Smith { 818db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 819db4efbfdSBarry Smith PetscBLASInt n,m,info; 820db4efbfdSBarry Smith 821db4efbfdSBarry Smith PetscFunctionBegin; 8229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 8239566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 824db4efbfdSBarry Smith if (!mat->pivots) { 8259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots)); 8269566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt))); 827db4efbfdSBarry Smith } 828db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 8299566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 8308b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info)); 8319566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 8328e57ea43SSatish Balay 83308401ef6SPierre Jolivet PetscCheck(info>=0,PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization"); 83408401ef6SPierre Jolivet PetscCheck(info<=0,PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 8358208b9aeSStefano Zampini 8364396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_LU; 8374396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_LU; 8384396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_LU; 8394396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU; 840d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 841db4efbfdSBarry Smith 8429566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 8439566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype)); 844f6224b95SHong Zhang 8459566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3)); 846db4efbfdSBarry Smith PetscFunctionReturn(0); 847db4efbfdSBarry Smith } 848db4efbfdSBarry Smith 8494396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 8504396437dSToby Isaac { 8514396437dSToby Isaac MatFactorInfo info; 8524396437dSToby Isaac 8534396437dSToby Isaac PetscFunctionBegin; 8549566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES)); 8559566063dSJacob Faibussowitsch PetscCall((*fact->ops->lufactor)(fact,NULL,NULL,&info)); 8564396437dSToby Isaac PetscFunctionReturn(0); 8574396437dSToby Isaac } 8584396437dSToby Isaac 8594396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 8604396437dSToby Isaac { 8614396437dSToby Isaac PetscFunctionBegin; 8624396437dSToby Isaac fact->preallocated = PETSC_TRUE; 8634396437dSToby Isaac fact->assembled = PETSC_TRUE; 8644396437dSToby Isaac fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 8654396437dSToby Isaac PetscFunctionReturn(0); 8664396437dSToby Isaac } 8674396437dSToby Isaac 868a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */ 869ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 870db4efbfdSBarry Smith { 871db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 872c5df96a5SBarry Smith PetscBLASInt info,n; 873db4efbfdSBarry Smith 874db4efbfdSBarry Smith PetscFunctionBegin; 8759566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 876db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 877a49dc2a2SStefano Zampini if (A->spd) { 8789566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 8798b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info)); 8809566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 881a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 882a49dc2a2SStefano Zampini } else if (A->hermitian) { 883a49dc2a2SStefano Zampini if (!mat->pivots) { 8849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots)); 8859566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt))); 886a49dc2a2SStefano Zampini } 887a49dc2a2SStefano Zampini if (!mat->fwork) { 888a49dc2a2SStefano Zampini PetscScalar dummy; 889a49dc2a2SStefano Zampini 890a49dc2a2SStefano Zampini mat->lfwork = -1; 8919566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 892a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 8939566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 894a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 8959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork)); 8969566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt))); 897a49dc2a2SStefano Zampini } 8989566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 899a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 9009566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 901a49dc2a2SStefano Zampini #endif 902a49dc2a2SStefano Zampini } else { /* symmetric case */ 903a49dc2a2SStefano Zampini if (!mat->pivots) { 9049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots)); 9059566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt))); 906a49dc2a2SStefano Zampini } 907a49dc2a2SStefano Zampini if (!mat->fwork) { 908a49dc2a2SStefano Zampini PetscScalar dummy; 909a49dc2a2SStefano Zampini 910a49dc2a2SStefano Zampini mat->lfwork = -1; 9119566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 912a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 9139566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 914a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 9159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork)); 9169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt))); 917a49dc2a2SStefano Zampini } 9189566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 919a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 921a49dc2a2SStefano Zampini } 92228b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %" PetscInt_FMT,(PetscInt)info-1); 9238208b9aeSStefano Zampini 9244396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_Cholesky; 9254396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_Cholesky; 9264396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_Cholesky; 9274396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky; 928d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 9292205254eSKarl Rupp 9309566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 9319566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype)); 932f6224b95SHong Zhang 9339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0)); 934db4efbfdSBarry Smith PetscFunctionReturn(0); 935db4efbfdSBarry Smith } 936db4efbfdSBarry Smith 9374396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 938db4efbfdSBarry Smith { 939db4efbfdSBarry Smith MatFactorInfo info; 940db4efbfdSBarry Smith 941db4efbfdSBarry Smith PetscFunctionBegin; 942db4efbfdSBarry Smith info.fill = 1.0; 9432205254eSKarl Rupp 9449566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES)); 9459566063dSJacob Faibussowitsch PetscCall((*fact->ops->choleskyfactor)(fact,NULL,&info)); 946db4efbfdSBarry Smith PetscFunctionReturn(0); 947db4efbfdSBarry Smith } 948db4efbfdSBarry Smith 949ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 950db4efbfdSBarry Smith { 951db4efbfdSBarry Smith PetscFunctionBegin; 952c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 9531bbcc794SSatish Balay fact->preallocated = PETSC_TRUE; 954719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 955db4efbfdSBarry Smith PetscFunctionReturn(0); 956db4efbfdSBarry Smith } 957db4efbfdSBarry Smith 958bf5a80bcSToby Isaac PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo) 9594905a7bcSToby Isaac { 9604905a7bcSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 9614905a7bcSToby Isaac PetscBLASInt n,m,info, min, max; 9624905a7bcSToby Isaac 9634905a7bcSToby Isaac PetscFunctionBegin; 9649566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 9659566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 9664396437dSToby Isaac max = PetscMax(m, n); 9674396437dSToby Isaac min = PetscMin(m, n); 9684905a7bcSToby Isaac if (!mat->tau) { 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(min,&mat->tau)); 9709566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar))); 9714396437dSToby Isaac } 9724396437dSToby Isaac if (!mat->pivots) { 9739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&mat->pivots)); 9749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,n*sizeof(PetscScalar))); 9754396437dSToby Isaac } 9764396437dSToby Isaac if (!mat->qrrhs) { 9779566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &(mat->qrrhs))); 9784905a7bcSToby Isaac } 9794905a7bcSToby Isaac if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 9804905a7bcSToby Isaac if (!mat->fwork) { 9814905a7bcSToby Isaac PetscScalar dummy; 9824905a7bcSToby Isaac 9834905a7bcSToby Isaac mat->lfwork = -1; 9849566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 9854905a7bcSToby Isaac PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info)); 9869566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 9874905a7bcSToby Isaac mat->lfwork = (PetscInt)PetscRealPart(dummy); 9889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork)); 9899566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt))); 9904905a7bcSToby Isaac } 9919566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 9924905a7bcSToby Isaac PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info)); 9939566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 99428b400f6SJacob Faibussowitsch PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization"); 9954905a7bcSToby Isaac // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR. For now just say rank is min of m and n 9964905a7bcSToby Isaac mat->rank = min; 9974905a7bcSToby Isaac 9984396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_QR; 9994396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_QR; 10004905a7bcSToby Isaac A->factortype = MAT_FACTOR_QR; 10014905a7bcSToby Isaac if (m == n) { 10024396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_QR; 10034396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR; 10044905a7bcSToby Isaac } 10054905a7bcSToby Isaac 10069566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 10079566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype)); 10084905a7bcSToby Isaac 10099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*min*min*(max-min/3.0))); 10104905a7bcSToby Isaac PetscFunctionReturn(0); 10114905a7bcSToby Isaac } 10124905a7bcSToby Isaac 10134905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 10144905a7bcSToby Isaac { 10154905a7bcSToby Isaac MatFactorInfo info; 10164905a7bcSToby Isaac 10174905a7bcSToby Isaac PetscFunctionBegin; 10184905a7bcSToby Isaac info.fill = 1.0; 10194905a7bcSToby Isaac 10209566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES)); 1021cac4c232SBarry Smith PetscUseMethod(fact,"MatQRFactor_C",(Mat,IS,const MatFactorInfo *),(fact,NULL,&info)); 10224905a7bcSToby Isaac PetscFunctionReturn(0); 10234905a7bcSToby Isaac } 10244905a7bcSToby Isaac 1025bf5a80bcSToby Isaac PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 10264905a7bcSToby Isaac { 10274905a7bcSToby Isaac PetscFunctionBegin; 10284905a7bcSToby Isaac fact->assembled = PETSC_TRUE; 10294905a7bcSToby Isaac fact->preallocated = PETSC_TRUE; 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense)); 10314905a7bcSToby Isaac PetscFunctionReturn(0); 10324905a7bcSToby Isaac } 10334905a7bcSToby Isaac 1034ca15aa20SStefano Zampini /* uses LAPACK */ 1035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 1036db4efbfdSBarry Smith { 1037db4efbfdSBarry Smith PetscFunctionBegin; 10389566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),fact)); 10399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n)); 10409566063dSJacob Faibussowitsch PetscCall(MatSetType(*fact,MATDENSE)); 104166e17bc3SBarry Smith (*fact)->trivialsymbolic = PETSC_TRUE; 10422a350339SBarry Smith if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) { 1043db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 10442a350339SBarry Smith (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense; 1045bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 1046db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 1047bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_QR) { 10489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)(*fact),"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense)); 1049db4efbfdSBarry Smith } 1050d5f3da31SBarry Smith (*fact)->factortype = ftype; 105100c67f3bSHong Zhang 10529566063dSJacob Faibussowitsch PetscCall(PetscFree((*fact)->solvertype)); 10539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype)); 10549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_LU])); 10559566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ILU])); 10569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY])); 10579566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ICC])); 1058db4efbfdSBarry Smith PetscFunctionReturn(0); 1059db4efbfdSBarry Smith } 1060db4efbfdSBarry Smith 1061289bc588SBarry Smith /* ------------------------------------------------------------------*/ 1062e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 1063289bc588SBarry Smith { 1064c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1065d9ca1df4SBarry Smith PetscScalar *x,*v = mat->v,zero = 0.0,xt; 1066d9ca1df4SBarry Smith const PetscScalar *b; 1067d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 106823fff9afSBarry Smith PetscBLASInt o = 1,bm = 0; 1069289bc588SBarry Smith 10703a40ed3dSBarry Smith PetscFunctionBegin; 1071ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 107208401ef6SPierre Jolivet PetscCheck(A->offloadmask != PETSC_OFFLOAD_GPU,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented"); 1073ca15aa20SStefano Zampini #endif 1074422a814eSBarry Smith if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */ 10759566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(m,&bm)); 1076289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 10773bffc371SBarry Smith /* this is a hack fix, should have another version without the second BLASdotu */ 10789566063dSJacob Faibussowitsch PetscCall(VecSet(xx,zero)); 1079289bc588SBarry Smith } 10809566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 10819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 1082b965ef7fSBarry Smith its = its*lits; 108308401ef6SPierre Jolivet PetscCheck(its > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits); 1084289bc588SBarry Smith while (its--) { 1085fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 1086289bc588SBarry Smith for (i=0; i<m; i++) { 10873bffc371SBarry Smith PetscStackCallBLAS("BLASdotu",xt = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o)); 108855a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 1089289bc588SBarry Smith } 1090289bc588SBarry Smith } 1091fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1092289bc588SBarry Smith for (i=m-1; i>=0; i--) { 10933bffc371SBarry Smith PetscStackCallBLAS("BLASdotu",xt = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o)); 109455a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 1095289bc588SBarry Smith } 1096289bc588SBarry Smith } 1097289bc588SBarry Smith } 10989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 10999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 11003a40ed3dSBarry Smith PetscFunctionReturn(0); 1101289bc588SBarry Smith } 1102289bc588SBarry Smith 1103289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1104ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 1105289bc588SBarry Smith { 1106c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1107d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1108d9ca1df4SBarry Smith PetscScalar *y; 11090805154bSBarry Smith PetscBLASInt m, n,_One=1; 1110ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 11113a40ed3dSBarry Smith 11123a40ed3dSBarry Smith PetscFunctionBegin; 11139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 11149566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 11159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11169566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(yy,&y)); 11175ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11185ac36cfcSBarry Smith PetscBLASInt i; 11195ac36cfcSBarry Smith for (i=0; i<n; i++) y[i] = 0.0; 11205ac36cfcSBarry Smith } else { 11218b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One)); 11229566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n)); 11235ac36cfcSBarry Smith } 11249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(yy,&y)); 11263a40ed3dSBarry Smith PetscFunctionReturn(0); 1127289bc588SBarry Smith } 1128800995b7SMatthew Knepley 1129ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 1130289bc588SBarry Smith { 1131c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1132d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0,_DZero=0.0; 11330805154bSBarry Smith PetscBLASInt m, n, _One=1; 1134d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 11353a40ed3dSBarry Smith 11363a40ed3dSBarry Smith PetscFunctionBegin; 11379566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 11389566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 11399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11409566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(yy,&y)); 11415ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11425ac36cfcSBarry Smith PetscBLASInt i; 11435ac36cfcSBarry Smith for (i=0; i<m; i++) y[i] = 0.0; 11445ac36cfcSBarry Smith } else { 11458b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One)); 11469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n)); 11475ac36cfcSBarry Smith } 11489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(yy,&y)); 11503a40ed3dSBarry Smith PetscFunctionReturn(0); 1151289bc588SBarry Smith } 11526ee01492SSatish Balay 1153ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 1154289bc588SBarry Smith { 1155c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1156d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1157d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0; 11580805154bSBarry Smith PetscBLASInt m, n, _One=1; 11593a40ed3dSBarry Smith 11603a40ed3dSBarry Smith PetscFunctionBegin; 11619566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 11629566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 11639566063dSJacob Faibussowitsch PetscCall(VecCopy(zz,yy)); 1164d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 11659566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11669566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&y)); 11678b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 11689566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&y)); 11709566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n)); 11713a40ed3dSBarry Smith PetscFunctionReturn(0); 1172289bc588SBarry Smith } 11736ee01492SSatish Balay 1174ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 1175289bc588SBarry Smith { 1176c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1177d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1178d9ca1df4SBarry Smith PetscScalar *y; 11790805154bSBarry Smith PetscBLASInt m, n, _One=1; 118087828ca2SBarry Smith PetscScalar _DOne=1.0; 11813a40ed3dSBarry Smith 11823a40ed3dSBarry Smith PetscFunctionBegin; 11839566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&m)); 11849566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&n)); 11859566063dSJacob Faibussowitsch PetscCall(VecCopy(zz,yy)); 1186d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 11879566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11889566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&y)); 11898b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 11909566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&y)); 11929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n)); 11933a40ed3dSBarry Smith PetscFunctionReturn(0); 1194289bc588SBarry Smith } 1195289bc588SBarry Smith 1196289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1197e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 1198289bc588SBarry Smith { 1199c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 120013f74950SBarry Smith PetscInt i; 120167e560aaSBarry Smith 12023a40ed3dSBarry Smith PetscFunctionBegin; 1203d0f46423SBarry Smith *ncols = A->cmap->n; 1204289bc588SBarry Smith if (cols) { 12059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n,cols)); 1206d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 1207289bc588SBarry Smith } 1208289bc588SBarry Smith if (vals) { 1209ca15aa20SStefano Zampini const PetscScalar *v; 1210ca15aa20SStefano Zampini 12119566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&v)); 12129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n,vals)); 1213ca15aa20SStefano Zampini v += row; 1214d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 12159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&v)); 1216289bc588SBarry Smith } 12173a40ed3dSBarry Smith PetscFunctionReturn(0); 1218289bc588SBarry Smith } 12196ee01492SSatish Balay 1220e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 1221289bc588SBarry Smith { 1222606d414cSSatish Balay PetscFunctionBegin; 1223cb4a9cd9SHong Zhang if (ncols) *ncols = 0; 12249566063dSJacob Faibussowitsch if (cols) PetscCall(PetscFree(*cols)); 12259566063dSJacob Faibussowitsch if (vals) PetscCall(PetscFree(*vals)); 12263a40ed3dSBarry Smith PetscFunctionReturn(0); 1227289bc588SBarry Smith } 1228289bc588SBarry Smith /* ----------------------------------------------------------------*/ 1229e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 1230289bc588SBarry Smith { 1231c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1232ca15aa20SStefano Zampini PetscScalar *av; 123313f74950SBarry Smith PetscInt i,j,idx=0; 1234ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1235c70f7ee4SJunchao Zhang PetscOffloadMask oldf; 1236ca15aa20SStefano Zampini #endif 1237d6dfbf8fSBarry Smith 12383a40ed3dSBarry Smith PetscFunctionBegin; 12399566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&av)); 1240289bc588SBarry Smith if (!mat->roworiented) { 1241dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1242289bc588SBarry Smith for (j=0; j<n; j++) { 1243cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 12446bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1); 1245289bc588SBarry Smith for (i=0; i<m; i++) { 1246cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 12476bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1); 1248ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 1249289bc588SBarry Smith } 1250289bc588SBarry Smith } 12513a40ed3dSBarry Smith } else { 1252289bc588SBarry Smith for (j=0; j<n; j++) { 1253cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 12546bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1); 1255289bc588SBarry Smith for (i=0; i<m; i++) { 1256cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 12576bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1); 1258ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 1259289bc588SBarry Smith } 1260289bc588SBarry Smith } 1261289bc588SBarry Smith } 12623a40ed3dSBarry Smith } else { 1263dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1264e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 1265cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 12666bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1); 1267e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 1268cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 12696bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1); 1270ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 1271e8d4e0b9SBarry Smith } 1272e8d4e0b9SBarry Smith } 12733a40ed3dSBarry Smith } else { 1274289bc588SBarry Smith for (i=0; i<m; i++) { 1275cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 12766bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1); 1277289bc588SBarry Smith for (j=0; j<n; j++) { 1278cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 12796bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1); 1280ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 1281289bc588SBarry Smith } 1282289bc588SBarry Smith } 1283289bc588SBarry Smith } 1284e8d4e0b9SBarry Smith } 1285ca15aa20SStefano Zampini /* hack to prevent unneeded copy to the GPU while returning the array */ 1286ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1287c70f7ee4SJunchao Zhang oldf = A->offloadmask; 1288c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_GPU; 1289ca15aa20SStefano Zampini #endif 12909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&av)); 1291ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1292c70f7ee4SJunchao Zhang A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU); 1293ca15aa20SStefano Zampini #endif 12943a40ed3dSBarry Smith PetscFunctionReturn(0); 1295289bc588SBarry Smith } 1296e8d4e0b9SBarry Smith 1297e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 1298ae80bb75SLois Curfman McInnes { 1299ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1300ca15aa20SStefano Zampini const PetscScalar *vv; 130113f74950SBarry Smith PetscInt i,j; 1302ae80bb75SLois Curfman McInnes 13033a40ed3dSBarry Smith PetscFunctionBegin; 13049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&vv)); 1305ae80bb75SLois Curfman McInnes /* row-oriented output */ 1306ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 130797e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 130808401ef6SPierre Jolivet PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested larger than number rows %" PetscInt_FMT,indexm[i],A->rmap->n); 1309ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 13106f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 131108401ef6SPierre Jolivet PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %" PetscInt_FMT " requested larger than number columns %" PetscInt_FMT,indexn[j],A->cmap->n); 1312ca15aa20SStefano Zampini *v++ = vv[indexn[j]*mat->lda + indexm[i]]; 1313ae80bb75SLois Curfman McInnes } 1314ae80bb75SLois Curfman McInnes } 13159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&vv)); 13163a40ed3dSBarry Smith PetscFunctionReturn(0); 1317ae80bb75SLois Curfman McInnes } 1318ae80bb75SLois Curfman McInnes 1319289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1320289bc588SBarry Smith 13218491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer) 1322aabbc4fbSShri Abhyankar { 13238491ab44SLisandro Dalcin PetscBool skipHeader; 13248491ab44SLisandro Dalcin PetscViewerFormat format; 13258491ab44SLisandro Dalcin PetscInt header[4],M,N,m,lda,i,j,k; 13268491ab44SLisandro Dalcin const PetscScalar *v; 13278491ab44SLisandro Dalcin PetscScalar *vwork; 1328aabbc4fbSShri Abhyankar 1329aabbc4fbSShri Abhyankar PetscFunctionBegin; 13309566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 13319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&skipHeader)); 13329566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 13338491ab44SLisandro Dalcin if (skipHeader) format = PETSC_VIEWER_NATIVE; 1334aabbc4fbSShri Abhyankar 13359566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&M,&N)); 13368491ab44SLisandro Dalcin 13378491ab44SLisandro Dalcin /* write matrix header */ 13388491ab44SLisandro Dalcin header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N; 13398491ab44SLisandro Dalcin header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N; 13409566063dSJacob Faibussowitsch if (!skipHeader) PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT)); 13418491ab44SLisandro Dalcin 13429566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,NULL)); 13438491ab44SLisandro Dalcin if (format != PETSC_VIEWER_NATIVE) { 13448491ab44SLisandro Dalcin PetscInt nnz = m*N, *iwork; 13458491ab44SLisandro Dalcin /* store row lengths for each row */ 13469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz,&iwork)); 13478491ab44SLisandro Dalcin for (i=0; i<m; i++) iwork[i] = N; 13489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 13498491ab44SLisandro Dalcin /* store column indices (zero start index) */ 13508491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 13518491ab44SLisandro Dalcin for (j=0; j<N; j++, k++) 13528491ab44SLisandro Dalcin iwork[k] = j; 13539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 13549566063dSJacob Faibussowitsch PetscCall(PetscFree(iwork)); 13558491ab44SLisandro Dalcin } 13568491ab44SLisandro Dalcin /* store matrix values as a dense matrix in row major order */ 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m*N,&vwork)); 13589566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat,&v)); 13599566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat,&lda)); 13608491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 13618491ab44SLisandro Dalcin for (j=0; j<N; j++, k++) 13628491ab44SLisandro Dalcin vwork[k] = v[i+lda*j]; 13639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat,&v)); 13649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 13659566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 13668491ab44SLisandro Dalcin PetscFunctionReturn(0); 13678491ab44SLisandro Dalcin } 13688491ab44SLisandro Dalcin 13698491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer) 13708491ab44SLisandro Dalcin { 13718491ab44SLisandro Dalcin PetscBool skipHeader; 13728491ab44SLisandro Dalcin PetscInt header[4],M,N,m,nz,lda,i,j,k; 13738491ab44SLisandro Dalcin PetscInt rows,cols; 13748491ab44SLisandro Dalcin PetscScalar *v,*vwork; 13758491ab44SLisandro Dalcin 13768491ab44SLisandro Dalcin PetscFunctionBegin; 13779566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 13789566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&skipHeader)); 13798491ab44SLisandro Dalcin 13808491ab44SLisandro Dalcin if (!skipHeader) { 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT)); 138208401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 13838491ab44SLisandro Dalcin M = header[1]; N = header[2]; 138408401ef6SPierre Jolivet PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M); 138508401ef6SPierre Jolivet PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N); 13868491ab44SLisandro Dalcin nz = header[3]; 1387aed4548fSBarry Smith PetscCheck(nz == MATRIX_BINARY_FORMAT_DENSE || nz >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %" PetscInt_FMT " in file",nz); 1388aabbc4fbSShri Abhyankar } else { 13899566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&M,&N)); 1390aed4548fSBarry Smith PetscCheck(M >= 0 && N >= 0,PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix"); 13918491ab44SLisandro Dalcin nz = MATRIX_BINARY_FORMAT_DENSE; 1392e6324fbbSBarry Smith } 1393aabbc4fbSShri Abhyankar 13948491ab44SLisandro Dalcin /* setup global sizes if not set */ 13958491ab44SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 13968491ab44SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 13979566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat)); 13988491ab44SLisandro Dalcin /* check if global sizes are correct */ 13999566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&rows,&cols)); 1400aed4548fSBarry Smith PetscCheck(M == rows && N == cols,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols); 1401aabbc4fbSShri Abhyankar 14029566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,NULL,&N)); 14039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,NULL)); 14049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mat,&v)); 14059566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat,&lda)); 14068491ab44SLisandro Dalcin if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense format */ 14078491ab44SLisandro Dalcin PetscInt nnz = m*N; 14088491ab44SLisandro Dalcin /* read in matrix values */ 14099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz,&vwork)); 14109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 14118491ab44SLisandro Dalcin /* store values in column major order */ 14128491ab44SLisandro Dalcin for (j=0; j<N; j++) 14138491ab44SLisandro Dalcin for (i=0; i<m; i++) 14148491ab44SLisandro Dalcin v[i+lda*j] = vwork[i*N+j]; 14159566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 14168491ab44SLisandro Dalcin } else { /* matrix in file is sparse format */ 14178491ab44SLisandro Dalcin PetscInt nnz = 0, *rlens, *icols; 14188491ab44SLisandro Dalcin /* read in row lengths */ 14199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rlens)); 14209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 14218491ab44SLisandro Dalcin for (i=0; i<m; i++) nnz += rlens[i]; 14228491ab44SLisandro Dalcin /* read in column indices and values */ 14239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nnz,&icols,nnz,&vwork)); 14249566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 14259566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 14268491ab44SLisandro Dalcin /* store values in column major order */ 14278491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 14288491ab44SLisandro Dalcin for (j=0; j<rlens[i]; j++, k++) 14298491ab44SLisandro Dalcin v[i+lda*icols[k]] = vwork[k]; 14309566063dSJacob Faibussowitsch PetscCall(PetscFree(rlens)); 14319566063dSJacob Faibussowitsch PetscCall(PetscFree2(icols,vwork)); 1432aabbc4fbSShri Abhyankar } 14339566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mat,&v)); 14349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY)); 14359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY)); 1436aabbc4fbSShri Abhyankar PetscFunctionReturn(0); 1437aabbc4fbSShri Abhyankar } 1438aabbc4fbSShri Abhyankar 1439eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer) 1440eb91f321SVaclav Hapla { 1441eb91f321SVaclav Hapla PetscBool isbinary, ishdf5; 1442eb91f321SVaclav Hapla 1443eb91f321SVaclav Hapla PetscFunctionBegin; 1444eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 1445eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 1446eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 14479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 14489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 14499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 1450eb91f321SVaclav Hapla if (isbinary) { 14519566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 1452eb91f321SVaclav Hapla } else if (ishdf5) { 1453eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 14549566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 1455eb91f321SVaclav Hapla #else 1456eb91f321SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1457eb91f321SVaclav Hapla #endif 1458eb91f321SVaclav Hapla } else { 145998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 1460eb91f321SVaclav Hapla } 1461eb91f321SVaclav Hapla PetscFunctionReturn(0); 1462eb91f321SVaclav Hapla } 1463eb91f321SVaclav Hapla 14646849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 1465289bc588SBarry Smith { 1466932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 146713f74950SBarry Smith PetscInt i,j; 14682dcb1b2aSMatthew Knepley const char *name; 1469ca15aa20SStefano Zampini PetscScalar *v,*av; 1470f3ef73ceSBarry Smith PetscViewerFormat format; 14715f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 1472ace3abfcSBarry Smith PetscBool allreal = PETSC_TRUE; 14735f481a85SSatish Balay #endif 1474932b0c3eSLois Curfman McInnes 14753a40ed3dSBarry Smith PetscFunctionBegin; 14769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&av)); 14779566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 1478456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 14793a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 1480fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 14819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1482d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 1483ca15aa20SStefano Zampini v = av + i; 14849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1485d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1486aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1487329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 14889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v))); 1489329f5518SBarry Smith } else if (PetscRealPart(*v)) { 14909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",j,(double)PetscRealPart(*v))); 14916831982aSBarry Smith } 149280cd9d93SLois Curfman McInnes #else 14936831982aSBarry Smith if (*v) { 14949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",j,(double)*v)); 14956831982aSBarry Smith } 149680cd9d93SLois Curfman McInnes #endif 14971b807ce4Svictorle v += a->lda; 149880cd9d93SLois Curfman McInnes } 14999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 150080cd9d93SLois Curfman McInnes } 15019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 15023a40ed3dSBarry Smith } else { 15039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1504aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 150547989497SBarry Smith /* determine if matrix has all real values */ 1506ca15aa20SStefano Zampini v = av; 1507d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 1508ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;} 150947989497SBarry Smith } 151047989497SBarry Smith #endif 1511fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 15129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A,&name)); 15139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",A->rmap->n,A->cmap->n)); 15149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%s = zeros(%" PetscInt_FMT ",%" PetscInt_FMT ");\n",name,A->rmap->n,A->cmap->n)); 15159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%s = [\n",name)); 1516ffac6cdbSBarry Smith } 1517ffac6cdbSBarry Smith 1518d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 1519ca15aa20SStefano Zampini v = av + i; 1520d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1521aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 152247989497SBarry Smith if (allreal) { 15239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v))); 152447989497SBarry Smith } else { 15259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v))); 152647989497SBarry Smith } 1527289bc588SBarry Smith #else 15289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v)); 1529289bc588SBarry Smith #endif 15301b807ce4Svictorle v += a->lda; 1531289bc588SBarry Smith } 15329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 1533289bc588SBarry Smith } 1534fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 15359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"];\n")); 1536ffac6cdbSBarry Smith } 15379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1538da3a660dSBarry Smith } 15399566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&av)); 15409566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 15413a40ed3dSBarry Smith PetscFunctionReturn(0); 1542289bc588SBarry Smith } 1543289bc588SBarry Smith 15449804daf3SBarry Smith #include <petscdraw.h> 1545e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 1546f1af5d2fSBarry Smith { 1547f1af5d2fSBarry Smith Mat A = (Mat) Aa; 1548383922c3SLisandro Dalcin PetscInt m = A->rmap->n,n = A->cmap->n,i,j; 1549383922c3SLisandro Dalcin int color = PETSC_DRAW_WHITE; 1550ca15aa20SStefano Zampini const PetscScalar *v; 1551b0a32e0cSBarry Smith PetscViewer viewer; 1552b05fc000SLisandro Dalcin PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1553f3ef73ceSBarry Smith PetscViewerFormat format; 1554f1af5d2fSBarry Smith 1555f1af5d2fSBarry Smith PetscFunctionBegin; 15569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer)); 15579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 15589566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr)); 1559f1af5d2fSBarry Smith 1560f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 15619566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&v)); 1562fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1563d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1564f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 1565f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 1566383922c3SLisandro Dalcin x_l = j; x_r = x_l + 1.0; 1567f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1568f1af5d2fSBarry Smith y_l = m - i - 1.0; 1569f1af5d2fSBarry Smith y_r = y_l + 1.0; 1570ca15aa20SStefano Zampini if (PetscRealPart(v[j*m+i]) > 0.) color = PETSC_DRAW_RED; 1571ca15aa20SStefano Zampini else if (PetscRealPart(v[j*m+i]) < 0.) color = PETSC_DRAW_BLUE; 1572ca15aa20SStefano Zampini else continue; 15739566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1574f1af5d2fSBarry Smith } 1575f1af5d2fSBarry Smith } 1576d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1577f1af5d2fSBarry Smith } else { 1578f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1579f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1580b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1581b05fc000SLisandro Dalcin PetscDraw popup; 1582b05fc000SLisandro Dalcin 1583f1af5d2fSBarry Smith for (i=0; i < m*n; i++) { 1584f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1585f1af5d2fSBarry Smith } 1586383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 15879566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw,&popup)); 15889566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup,minv,maxv)); 1589383922c3SLisandro Dalcin 1590d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1591f1af5d2fSBarry Smith for (j=0; j<n; j++) { 1592f1af5d2fSBarry Smith x_l = j; 1593f1af5d2fSBarry Smith x_r = x_l + 1.0; 1594f1af5d2fSBarry Smith for (i=0; i<m; i++) { 1595f1af5d2fSBarry Smith y_l = m - i - 1.0; 1596f1af5d2fSBarry Smith y_r = y_l + 1.0; 1597b05fc000SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv); 15989566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1599f1af5d2fSBarry Smith } 1600f1af5d2fSBarry Smith } 1601d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1602f1af5d2fSBarry Smith } 16039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&v)); 1604f1af5d2fSBarry Smith PetscFunctionReturn(0); 1605f1af5d2fSBarry Smith } 1606f1af5d2fSBarry Smith 1607e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1608f1af5d2fSBarry Smith { 1609b0a32e0cSBarry Smith PetscDraw draw; 1610ace3abfcSBarry Smith PetscBool isnull; 1611329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1612f1af5d2fSBarry Smith 1613f1af5d2fSBarry Smith PetscFunctionBegin; 16149566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 16159566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 1616abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1617f1af5d2fSBarry Smith 1618d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1619f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 16209566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr)); 16219566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer)); 16229566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A)); 16239566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL)); 16249566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 1625f1af5d2fSBarry Smith PetscFunctionReturn(0); 1626f1af5d2fSBarry Smith } 1627f1af5d2fSBarry Smith 1628dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1629932b0c3eSLois Curfman McInnes { 1630ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw; 1631932b0c3eSLois Curfman McInnes 16323a40ed3dSBarry Smith PetscFunctionBegin; 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 1636c45a1595SBarry Smith if (iascii) { 16379566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense_ASCII(A,viewer)); 16380f5bd95cSBarry Smith } else if (isbinary) { 16399566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(A,viewer)); 1640f1af5d2fSBarry Smith } else if (isdraw) { 16419566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense_Draw(A,viewer)); 1642932b0c3eSLois Curfman McInnes } 16433a40ed3dSBarry Smith PetscFunctionReturn(0); 1644932b0c3eSLois Curfman McInnes } 1645289bc588SBarry Smith 1646637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array) 1647d3042a70SBarry Smith { 1648d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1649d3042a70SBarry Smith 1650d3042a70SBarry Smith PetscFunctionBegin; 165128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 165228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 165328b400f6SJacob Faibussowitsch PetscCheck(!a->unplacedarray,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first"); 1654d3042a70SBarry Smith a->unplacedarray = a->v; 1655d3042a70SBarry Smith a->unplaced_user_alloc = a->user_alloc; 1656d3042a70SBarry Smith a->v = (PetscScalar*) array; 1657637a0070SStefano Zampini a->user_alloc = PETSC_TRUE; 1658ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1659c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1660ca15aa20SStefano Zampini #endif 1661d3042a70SBarry Smith PetscFunctionReturn(0); 1662d3042a70SBarry Smith } 1663d3042a70SBarry Smith 1664d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A) 1665d3042a70SBarry Smith { 1666d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1667d3042a70SBarry Smith 1668d3042a70SBarry Smith PetscFunctionBegin; 166928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 167028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1671d3042a70SBarry Smith a->v = a->unplacedarray; 1672d3042a70SBarry Smith a->user_alloc = a->unplaced_user_alloc; 1673d3042a70SBarry Smith a->unplacedarray = NULL; 1674ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1675c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1676ca15aa20SStefano Zampini #endif 1677d3042a70SBarry Smith PetscFunctionReturn(0); 1678d3042a70SBarry Smith } 1679d3042a70SBarry Smith 1680d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array) 1681d5ea218eSStefano Zampini { 1682d5ea218eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1683d5ea218eSStefano Zampini 1684d5ea218eSStefano Zampini PetscFunctionBegin; 168528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 168628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 16879566063dSJacob Faibussowitsch if (!a->user_alloc) PetscCall(PetscFree(a->v)); 1688d5ea218eSStefano Zampini a->v = (PetscScalar*) array; 1689d5ea218eSStefano Zampini a->user_alloc = PETSC_FALSE; 1690d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 1691d5ea218eSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 1692d5ea218eSStefano Zampini #endif 1693d5ea218eSStefano Zampini PetscFunctionReturn(0); 1694d5ea218eSStefano Zampini } 1695d5ea218eSStefano Zampini 1696ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat) 1697289bc588SBarry Smith { 1698ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 169990f02eecSBarry Smith 17003a40ed3dSBarry Smith PetscFunctionBegin; 1701aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1702c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows %" PetscInt_FMT " Cols %" PetscInt_FMT,mat->rmap->n,mat->cmap->n); 1703a5a9c739SBarry Smith #endif 17049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(l->qrrhs))); 17059566063dSJacob Faibussowitsch PetscCall(PetscFree(l->tau)); 17069566063dSJacob Faibussowitsch PetscCall(PetscFree(l->pivots)); 17079566063dSJacob Faibussowitsch PetscCall(PetscFree(l->fwork)); 17089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&l->ptapwork)); 17099566063dSJacob Faibussowitsch if (!l->user_alloc) PetscCall(PetscFree(l->v)); 17109566063dSJacob Faibussowitsch if (!l->unplaced_user_alloc) PetscCall(PetscFree(l->unplacedarray)); 171128b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 171228b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&l->cvec)); 17149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&l->cmat)); 17159566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1716dbd8c25aSHong Zhang 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL)); 17199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 17219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 17229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 17239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 17249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 17259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 17269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 17279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 17289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 17299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 17309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL)); 17318baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL)); 17338baccfbdSHong Zhang #endif 1734d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL)); 1736d24d4204SJose E. Roman #endif 17372bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL)); 17399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL)); 17409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL)); 17412bf066beSStefano Zampini #endif 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL)); 17439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL)); 17469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL)); 174752c5f739Sprj- 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 17509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 17519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 17539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 17549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 17569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 17579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 17583a40ed3dSBarry Smith PetscFunctionReturn(0); 1759289bc588SBarry Smith } 1760289bc588SBarry Smith 1761e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1762289bc588SBarry Smith { 1763c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 17646536e3caSStefano Zampini PetscInt k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n; 176587828ca2SBarry Smith PetscScalar *v,tmp; 176648b35521SBarry Smith 17673a40ed3dSBarry Smith PetscFunctionBegin; 17686536e3caSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 17696536e3caSStefano Zampini if (m == n) { /* in place transpose */ 17709566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 1771d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1772289bc588SBarry Smith for (k=0; k<j; k++) { 17731b807ce4Svictorle tmp = v[j + k*M]; 17741b807ce4Svictorle v[j + k*M] = v[k + j*M]; 17751b807ce4Svictorle v[k + j*M] = tmp; 1776289bc588SBarry Smith } 1777289bc588SBarry Smith } 17789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 17796536e3caSStefano Zampini } else { /* reuse memory, temporary allocates new memory */ 17806536e3caSStefano Zampini PetscScalar *v2; 17816536e3caSStefano Zampini PetscLayout tmplayout; 17826536e3caSStefano Zampini 17839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((size_t)m*n,&v2)); 17849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 17856536e3caSStefano Zampini for (j=0; j<n; j++) { 17866536e3caSStefano Zampini for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M]; 17876536e3caSStefano Zampini } 17889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v,v2,(size_t)m*n)); 17899566063dSJacob Faibussowitsch PetscCall(PetscFree(v2)); 17909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 17916536e3caSStefano Zampini /* cleanup size dependent quantities */ 17929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mat->cvec)); 17939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat->cmat)); 17949566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->pivots)); 17959566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->fwork)); 17969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat->ptapwork)); 17976536e3caSStefano Zampini /* swap row/col layouts */ 17986536e3caSStefano Zampini mat->lda = n; 17996536e3caSStefano Zampini tmplayout = A->rmap; 18006536e3caSStefano Zampini A->rmap = A->cmap; 18016536e3caSStefano Zampini A->cmap = tmplayout; 18026536e3caSStefano Zampini } 18033a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1804d3e5ee88SLois Curfman McInnes Mat tmat; 1805ec8511deSBarry Smith Mat_SeqDense *tmatd; 180687828ca2SBarry Smith PetscScalar *v2; 1807af36a384SStefano Zampini PetscInt M2; 1808ea709b57SSatish Balay 18096536e3caSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 18109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&tmat)); 18119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n)); 18129566063dSJacob Faibussowitsch PetscCall(MatSetType(tmat,((PetscObject)A)->type_name)); 18139566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(tmat,NULL)); 1814ca15aa20SStefano Zampini } else tmat = *matout; 1815ca15aa20SStefano Zampini 18169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&v)); 18179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(tmat,&v2)); 1818ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 1819ca15aa20SStefano Zampini M2 = tmatd->lda; 1820d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 1821af36a384SStefano Zampini for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M]; 1822d3e5ee88SLois Curfman McInnes } 18239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(tmat,&v2)); 18249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&v)); 18259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY)); 18269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY)); 18276536e3caSStefano Zampini *matout = tmat; 182848b35521SBarry Smith } 18293a40ed3dSBarry Smith PetscFunctionReturn(0); 1830289bc588SBarry Smith } 1831289bc588SBarry Smith 1832e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool *flg) 1833289bc588SBarry Smith { 1834c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1835c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 1836ca15aa20SStefano Zampini PetscInt i; 1837ca15aa20SStefano Zampini const PetscScalar *v1,*v2; 18389ea5d5aeSSatish Balay 18393a40ed3dSBarry Smith PetscFunctionBegin; 1840d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1841d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 18429566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A1,&v1)); 18439566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A2,&v2)); 1844ca15aa20SStefano Zampini for (i=0; i<A1->cmap->n; i++) { 18459566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(v1,v2,A1->rmap->n,flg)); 1846ca15aa20SStefano Zampini if (*flg == PETSC_FALSE) PetscFunctionReturn(0); 1847ca15aa20SStefano Zampini v1 += mat1->lda; 1848ca15aa20SStefano Zampini v2 += mat2->lda; 18491b807ce4Svictorle } 18509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A1,&v1)); 18519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A2,&v2)); 185277c4ece6SBarry Smith *flg = PETSC_TRUE; 18533a40ed3dSBarry Smith PetscFunctionReturn(0); 1854289bc588SBarry Smith } 1855289bc588SBarry Smith 1856e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1857289bc588SBarry Smith { 1858c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 185913f74950SBarry Smith PetscInt i,n,len; 1860ca15aa20SStefano Zampini PetscScalar *x; 1861ca15aa20SStefano Zampini const PetscScalar *vv; 186244cd7ae7SLois Curfman McInnes 18633a40ed3dSBarry Smith PetscFunctionBegin; 18649566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 18659566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 1866d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 18679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&vv)); 186808401ef6SPierre Jolivet PetscCheck(n == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 186944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 1870ca15aa20SStefano Zampini x[i] = vv[i*mat->lda + i]; 1871289bc588SBarry Smith } 18729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&vv)); 18739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 18743a40ed3dSBarry Smith PetscFunctionReturn(0); 1875289bc588SBarry Smith } 1876289bc588SBarry Smith 1877e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1878289bc588SBarry Smith { 1879c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1880f1ceaac6SMatthew G. Knepley const PetscScalar *l,*r; 1881ca15aa20SStefano Zampini PetscScalar x,*v,*vv; 1882d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 188355659b69SBarry Smith 18843a40ed3dSBarry Smith PetscFunctionBegin; 18859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&vv)); 188628988994SBarry Smith if (ll) { 18879566063dSJacob Faibussowitsch PetscCall(VecGetSize(ll,&m)); 18889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 188908401ef6SPierre Jolivet PetscCheck(m == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1890da3a660dSBarry Smith for (i=0; i<m; i++) { 1891da3a660dSBarry Smith x = l[i]; 1892ca15aa20SStefano Zampini v = vv + i; 1893b43bac26SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;} 1894da3a660dSBarry Smith } 18959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 18969566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 1897da3a660dSBarry Smith } 189828988994SBarry Smith if (rr) { 18999566063dSJacob Faibussowitsch PetscCall(VecGetSize(rr,&n)); 19009566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&r)); 190108401ef6SPierre Jolivet PetscCheck(n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1902da3a660dSBarry Smith for (i=0; i<n; i++) { 1903da3a660dSBarry Smith x = r[i]; 1904ca15aa20SStefano Zampini v = vv + i*mat->lda; 19052205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 1906da3a660dSBarry Smith } 19079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&r)); 19089566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 1909da3a660dSBarry Smith } 19109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&vv)); 19113a40ed3dSBarry Smith PetscFunctionReturn(0); 1912289bc588SBarry Smith } 1913289bc588SBarry Smith 1914ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1915289bc588SBarry Smith { 1916c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1917ca15aa20SStefano Zampini PetscScalar *v,*vv; 1918329f5518SBarry Smith PetscReal sum = 0.0; 191975f6d85dSStefano Zampini PetscInt lda, m=A->rmap->n,i,j; 192055659b69SBarry Smith 19213a40ed3dSBarry Smith PetscFunctionBegin; 19229566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&vv)); 19239566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(A,&lda)); 1924ca15aa20SStefano Zampini v = vv; 1925289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1926a5ce6ee0Svictorle if (lda>m) { 1927d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1928ca15aa20SStefano Zampini v = vv+j*lda; 1929a5ce6ee0Svictorle for (i=0; i<m; i++) { 1930a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1931a5ce6ee0Svictorle } 1932a5ce6ee0Svictorle } 1933a5ce6ee0Svictorle } else { 1934570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16) 1935570b7f6dSBarry Smith PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n; 193673cf7048SBarry Smith PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one)); 1937570b7f6dSBarry Smith } 1938570b7f6dSBarry Smith #else 1939d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 1940329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1941289bc588SBarry Smith } 1942a5ce6ee0Svictorle } 19438f1a2a5eSBarry Smith *nrm = PetscSqrtReal(sum); 1944570b7f6dSBarry Smith #endif 19459566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*A->cmap->n*A->rmap->n)); 19463a40ed3dSBarry Smith } else if (type == NORM_1) { 1947064f8208SBarry Smith *nrm = 0.0; 1948d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1949ca15aa20SStefano Zampini v = vv + j*mat->lda; 1950289bc588SBarry Smith sum = 0.0; 1951d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 195233a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1953289bc588SBarry Smith } 1954064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1955289bc588SBarry Smith } 19569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*A->cmap->n*A->rmap->n)); 19573a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1958064f8208SBarry Smith *nrm = 0.0; 1959d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 1960ca15aa20SStefano Zampini v = vv + j; 1961289bc588SBarry Smith sum = 0.0; 1962d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 19631b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1964289bc588SBarry Smith } 1965064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1966289bc588SBarry Smith } 19679566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*A->cmap->n*A->rmap->n)); 1968e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm"); 19699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv)); 19703a40ed3dSBarry Smith PetscFunctionReturn(0); 1971289bc588SBarry Smith } 1972289bc588SBarry Smith 1973e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg) 1974289bc588SBarry Smith { 1975c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 197667e560aaSBarry Smith 19773a40ed3dSBarry Smith PetscFunctionBegin; 1978b5a2b587SKris Buschelman switch (op) { 1979b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 19804e0d8c25SBarry Smith aij->roworiented = flg; 1981b5a2b587SKris Buschelman break; 1982512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1983b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 19843971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 19858c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 198613fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 1987b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1988b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 19890f8fb01aSBarry Smith case MAT_IGNORE_ZERO_ENTRIES: 19905021d80fSJed Brown case MAT_IGNORE_LOWER_TRIANGULAR: 1991071fcb05SBarry Smith case MAT_SORTED_FULL: 19929566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 19935021d80fSJed Brown break; 19945021d80fSJed Brown case MAT_SPD: 199577e54ba9SKris Buschelman case MAT_SYMMETRIC: 199677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 19979a4540c5SBarry Smith case MAT_HERMITIAN: 19989a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 19995021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 200077e54ba9SKris Buschelman break; 2001b5a2b587SKris Buschelman default: 200298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 20033a40ed3dSBarry Smith } 20043a40ed3dSBarry Smith PetscFunctionReturn(0); 2005289bc588SBarry Smith } 2006289bc588SBarry Smith 20073d8925e7SStefano Zampini PetscErrorCode MatZeroEntries_SeqDense(Mat A) 20086f0a148fSBarry Smith { 2009ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 20103d8925e7SStefano Zampini PetscInt lda=l->lda,m=A->rmap->n,n=A->cmap->n,j; 2011ca15aa20SStefano Zampini PetscScalar *v; 20123a40ed3dSBarry Smith 20133a40ed3dSBarry Smith PetscFunctionBegin; 20149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A,&v)); 2015a5ce6ee0Svictorle if (lda>m) { 20163d8925e7SStefano Zampini for (j=0; j<n; j++) { 20179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(v+j*lda,m)); 2018a5ce6ee0Svictorle } 2019a5ce6ee0Svictorle } else { 20209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(v,PetscInt64Mult(m,n))); 2021a5ce6ee0Svictorle } 20229566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A,&v)); 20233a40ed3dSBarry Smith PetscFunctionReturn(0); 20246f0a148fSBarry Smith } 20256f0a148fSBarry Smith 2026e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 20276f0a148fSBarry Smith { 2028ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 2029b9679d65SBarry Smith PetscInt m = l->lda, n = A->cmap->n, i,j; 2030ca15aa20SStefano Zampini PetscScalar *slot,*bb,*v; 203197b48c8fSBarry Smith const PetscScalar *xx; 203255659b69SBarry Smith 20333a40ed3dSBarry Smith PetscFunctionBegin; 203476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2035b9679d65SBarry Smith for (i=0; i<N; i++) { 203608401ef6SPierre Jolivet PetscCheck(rows[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 203708401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT,rows[i],A->rmap->n); 2038b9679d65SBarry Smith } 203976bd3646SJed Brown } 2040ca15aa20SStefano Zampini if (!N) PetscFunctionReturn(0); 2041b9679d65SBarry Smith 204297b48c8fSBarry Smith /* fix right hand side if needed */ 204397b48c8fSBarry Smith if (x && b) { 20449566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 20459566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 20462205254eSKarl Rupp for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 20479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 20489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 204997b48c8fSBarry Smith } 205097b48c8fSBarry Smith 20519566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 20526f0a148fSBarry Smith for (i=0; i<N; i++) { 2053ca15aa20SStefano Zampini slot = v + rows[i]; 2054b9679d65SBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 20556f0a148fSBarry Smith } 2056f4df32b1SMatthew Knepley if (diag != 0.0) { 205708401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 20586f0a148fSBarry Smith for (i=0; i<N; i++) { 2059ca15aa20SStefano Zampini slot = v + (m+1)*rows[i]; 2060f4df32b1SMatthew Knepley *slot = diag; 20616f0a148fSBarry Smith } 20626f0a148fSBarry Smith } 20639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 20643a40ed3dSBarry Smith PetscFunctionReturn(0); 20656f0a148fSBarry Smith } 2066557bce09SLois Curfman McInnes 206749a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda) 206849a6ff4bSBarry Smith { 206949a6ff4bSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 207049a6ff4bSBarry Smith 207149a6ff4bSBarry Smith PetscFunctionBegin; 207249a6ff4bSBarry Smith *lda = mat->lda; 207349a6ff4bSBarry Smith PetscFunctionReturn(0); 207449a6ff4bSBarry Smith } 207549a6ff4bSBarry Smith 2076637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array) 207764e87e97SBarry Smith { 2078c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 20793a40ed3dSBarry Smith 20803a40ed3dSBarry Smith PetscFunctionBegin; 208128b400f6SJacob Faibussowitsch PetscCheck(!mat->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 208264e87e97SBarry Smith *array = mat->v; 20833a40ed3dSBarry Smith PetscFunctionReturn(0); 208464e87e97SBarry Smith } 20850754003eSLois Curfman McInnes 2086637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array) 2087ff14e315SSatish Balay { 20883a40ed3dSBarry Smith PetscFunctionBegin; 208975f6d85dSStefano Zampini if (array) *array = NULL; 20903a40ed3dSBarry Smith PetscFunctionReturn(0); 2091ff14e315SSatish Balay } 20920754003eSLois Curfman McInnes 20930f74d2c1SSatish Balay /*@ 209449a6ff4bSBarry Smith MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray() 209549a6ff4bSBarry Smith 2096ad16ce7aSStefano Zampini Not collective 209749a6ff4bSBarry Smith 209849a6ff4bSBarry Smith Input Parameter: 209949a6ff4bSBarry Smith . mat - a MATSEQDENSE or MATMPIDENSE matrix 210049a6ff4bSBarry Smith 210149a6ff4bSBarry Smith Output Parameter: 210249a6ff4bSBarry Smith . lda - the leading dimension 210349a6ff4bSBarry Smith 210449a6ff4bSBarry Smith Level: intermediate 210549a6ff4bSBarry Smith 2106db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseSetLDA()` 210749a6ff4bSBarry Smith @*/ 210849a6ff4bSBarry Smith PetscErrorCode MatDenseGetLDA(Mat A,PetscInt *lda) 210949a6ff4bSBarry Smith { 211049a6ff4bSBarry Smith PetscFunctionBegin; 2111d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2112dadcf809SJacob Faibussowitsch PetscValidIntPointer(lda,2); 211375f6d85dSStefano Zampini MatCheckPreallocated(A,1); 2114cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda)); 211549a6ff4bSBarry Smith PetscFunctionReturn(0); 211649a6ff4bSBarry Smith } 211749a6ff4bSBarry Smith 21180f74d2c1SSatish Balay /*@ 2119ad16ce7aSStefano Zampini MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix 2120ad16ce7aSStefano Zampini 2121ad16ce7aSStefano Zampini Not collective 2122ad16ce7aSStefano Zampini 2123d8d19677SJose E. Roman Input Parameters: 2124ad16ce7aSStefano Zampini + mat - a MATSEQDENSE or MATMPIDENSE matrix 2125ad16ce7aSStefano Zampini - lda - the leading dimension 2126ad16ce7aSStefano Zampini 2127ad16ce7aSStefano Zampini Level: intermediate 2128ad16ce7aSStefano Zampini 2129db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetLDA()` 2130ad16ce7aSStefano Zampini @*/ 2131ad16ce7aSStefano Zampini PetscErrorCode MatDenseSetLDA(Mat A,PetscInt lda) 2132ad16ce7aSStefano Zampini { 2133ad16ce7aSStefano Zampini PetscFunctionBegin; 2134ad16ce7aSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2135cac4c232SBarry Smith PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda)); 2136ad16ce7aSStefano Zampini PetscFunctionReturn(0); 2137ad16ce7aSStefano Zampini } 2138ad16ce7aSStefano Zampini 2139ad16ce7aSStefano Zampini /*@C 21406947451fSStefano Zampini MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored 214173a71a0fSBarry Smith 21428572280aSBarry Smith Logically Collective on Mat 214373a71a0fSBarry Smith 214473a71a0fSBarry Smith Input Parameter: 21456947451fSStefano Zampini . mat - a dense matrix 214673a71a0fSBarry Smith 214773a71a0fSBarry Smith Output Parameter: 214873a71a0fSBarry Smith . array - pointer to the data 214973a71a0fSBarry Smith 215073a71a0fSBarry Smith Level: intermediate 215173a71a0fSBarry Smith 2152db781477SPatrick Sanan .seealso: `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 215373a71a0fSBarry Smith @*/ 21548c778c55SBarry Smith PetscErrorCode MatDenseGetArray(Mat A,PetscScalar **array) 215573a71a0fSBarry Smith { 215673a71a0fSBarry Smith PetscFunctionBegin; 2157d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2158d5ea218eSStefano Zampini PetscValidPointer(array,2); 2159cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array)); 216073a71a0fSBarry Smith PetscFunctionReturn(0); 216173a71a0fSBarry Smith } 216273a71a0fSBarry Smith 2163dec5eb66SMatthew G Knepley /*@C 2164579dbff0SBarry Smith MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray() 216573a71a0fSBarry Smith 21668572280aSBarry Smith Logically Collective on Mat 21678572280aSBarry Smith 21688572280aSBarry Smith Input Parameters: 21696947451fSStefano Zampini + mat - a dense matrix 2170a2b725a8SWilliam Gropp - array - pointer to the data 21718572280aSBarry Smith 21728572280aSBarry Smith Level: intermediate 21738572280aSBarry Smith 2174db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 21758572280aSBarry Smith @*/ 21768572280aSBarry Smith PetscErrorCode MatDenseRestoreArray(Mat A,PetscScalar **array) 21778572280aSBarry Smith { 21788572280aSBarry Smith PetscFunctionBegin; 2179d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2180d5ea218eSStefano Zampini PetscValidPointer(array,2); 2181cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array)); 21829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2183637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2184637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 2185637a0070SStefano Zampini #endif 21868572280aSBarry Smith PetscFunctionReturn(0); 21878572280aSBarry Smith } 21888572280aSBarry Smith 21898572280aSBarry Smith /*@C 21906947451fSStefano Zampini MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored 21918572280aSBarry Smith 21928572280aSBarry Smith Not Collective 21938572280aSBarry Smith 21948572280aSBarry Smith Input Parameter: 21956947451fSStefano Zampini . mat - a dense matrix 21968572280aSBarry Smith 21978572280aSBarry Smith Output Parameter: 21988572280aSBarry Smith . array - pointer to the data 21998572280aSBarry Smith 22008572280aSBarry Smith Level: intermediate 22018572280aSBarry Smith 2202db781477SPatrick Sanan .seealso: `MatDenseRestoreArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 22038572280aSBarry Smith @*/ 22048572280aSBarry Smith PetscErrorCode MatDenseGetArrayRead(Mat A,const PetscScalar **array) 22058572280aSBarry Smith { 22068572280aSBarry Smith PetscFunctionBegin; 2207d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2208d5ea218eSStefano Zampini PetscValidPointer(array,2); 2209cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array)); 22108572280aSBarry Smith PetscFunctionReturn(0); 22118572280aSBarry Smith } 22128572280aSBarry Smith 22138572280aSBarry Smith /*@C 22146947451fSStefano Zampini MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead() 22158572280aSBarry Smith 221673a71a0fSBarry Smith Not Collective 221773a71a0fSBarry Smith 221873a71a0fSBarry Smith Input Parameters: 22196947451fSStefano Zampini + mat - a dense matrix 2220a2b725a8SWilliam Gropp - array - pointer to the data 222173a71a0fSBarry Smith 222273a71a0fSBarry Smith Level: intermediate 222373a71a0fSBarry Smith 2224db781477SPatrick Sanan .seealso: `MatDenseGetArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 222573a71a0fSBarry Smith @*/ 22268572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead(Mat A,const PetscScalar **array) 222773a71a0fSBarry Smith { 222873a71a0fSBarry Smith PetscFunctionBegin; 2229d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2230d5ea218eSStefano Zampini PetscValidPointer(array,2); 2231cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array)); 223273a71a0fSBarry Smith PetscFunctionReturn(0); 223373a71a0fSBarry Smith } 223473a71a0fSBarry Smith 22356947451fSStefano Zampini /*@C 22366947451fSStefano Zampini MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored 22376947451fSStefano Zampini 22386947451fSStefano Zampini Not Collective 22396947451fSStefano Zampini 22406947451fSStefano Zampini Input Parameter: 22416947451fSStefano Zampini . mat - a dense matrix 22426947451fSStefano Zampini 22436947451fSStefano Zampini Output Parameter: 22446947451fSStefano Zampini . array - pointer to the data 22456947451fSStefano Zampini 22466947451fSStefano Zampini Level: intermediate 22476947451fSStefano Zampini 2248db781477SPatrick Sanan .seealso: `MatDenseRestoreArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 22496947451fSStefano Zampini @*/ 22506947451fSStefano Zampini PetscErrorCode MatDenseGetArrayWrite(Mat A,PetscScalar **array) 22516947451fSStefano Zampini { 22526947451fSStefano Zampini PetscFunctionBegin; 2253d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2254d5ea218eSStefano Zampini PetscValidPointer(array,2); 2255cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array)); 22566947451fSStefano Zampini PetscFunctionReturn(0); 22576947451fSStefano Zampini } 22586947451fSStefano Zampini 22596947451fSStefano Zampini /*@C 22606947451fSStefano Zampini MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite() 22616947451fSStefano Zampini 22626947451fSStefano Zampini Not Collective 22636947451fSStefano Zampini 22646947451fSStefano Zampini Input Parameters: 22656947451fSStefano Zampini + mat - a dense matrix 22666947451fSStefano Zampini - array - pointer to the data 22676947451fSStefano Zampini 22686947451fSStefano Zampini Level: intermediate 22696947451fSStefano Zampini 2270db781477SPatrick Sanan .seealso: `MatDenseGetArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 22716947451fSStefano Zampini @*/ 22726947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite(Mat A,PetscScalar **array) 22736947451fSStefano Zampini { 22746947451fSStefano Zampini PetscFunctionBegin; 2275d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2276d5ea218eSStefano Zampini PetscValidPointer(array,2); 2277cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array)); 22789566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 22796947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA) 22806947451fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 22816947451fSStefano Zampini #endif 22826947451fSStefano Zampini PetscFunctionReturn(0); 22836947451fSStefano Zampini } 22846947451fSStefano Zampini 2285023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 22860754003eSLois Curfman McInnes { 2287c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2288bf5a80bcSToby Isaac PetscInt i,j,nrows,ncols,ldb; 22895d0c19d7SBarry Smith const PetscInt *irow,*icol; 229087828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 22910754003eSLois Curfman McInnes Mat newmat; 22920754003eSLois Curfman McInnes 22933a40ed3dSBarry Smith PetscFunctionBegin; 22949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 22959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol,&icol)); 22969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 22979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 22980754003eSLois Curfman McInnes 2299182d2002SSatish Balay /* Check submatrixcall */ 2300182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 230113f74950SBarry Smith PetscInt n_cols,n_rows; 23029566063dSJacob Faibussowitsch PetscCall(MatGetSize(*B,&n_rows,&n_cols)); 230321a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 2304f746d493SDmitry Karpeev /* resize the result matrix to match number of requested rows/columns */ 23059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B,nrows,ncols,nrows,ncols)); 230621a2c019SBarry Smith } 2307182d2002SSatish Balay newmat = *B; 2308182d2002SSatish Balay } else { 23090754003eSLois Curfman McInnes /* Create and fill new matrix */ 23109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 23119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,nrows,ncols)); 23129566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 23139566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(newmat,NULL)); 2314182d2002SSatish Balay } 2315182d2002SSatish Balay 2316182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 23179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmat,&bv)); 23189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newmat,&ldb)); 2319182d2002SSatish Balay for (i=0; i<ncols; i++) { 23206de62eeeSBarry Smith av = v + mat->lda*icol[i]; 2321ca15aa20SStefano Zampini for (j=0; j<nrows; j++) bv[j] = av[irow[j]]; 2322bf5a80bcSToby Isaac bv += ldb; 23230754003eSLois Curfman McInnes } 23249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmat,&bv)); 2325182d2002SSatish Balay 2326182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 23279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 23289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 23290754003eSLois Curfman McInnes 23300754003eSLois Curfman McInnes /* Free work space */ 23319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 23329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol,&icol)); 2333182d2002SSatish Balay *B = newmat; 23343a40ed3dSBarry Smith PetscFunctionReturn(0); 23350754003eSLois Curfman McInnes } 23360754003eSLois Curfman McInnes 23377dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 2338905e6a2fSBarry Smith { 233913f74950SBarry Smith PetscInt i; 2340905e6a2fSBarry Smith 23413a40ed3dSBarry Smith PetscFunctionBegin; 2342905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 23439566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n,B)); 2344905e6a2fSBarry Smith } 2345905e6a2fSBarry Smith 2346905e6a2fSBarry Smith for (i=0; i<n; i++) { 23479566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i])); 2348905e6a2fSBarry Smith } 23493a40ed3dSBarry Smith PetscFunctionReturn(0); 2350905e6a2fSBarry Smith } 2351905e6a2fSBarry Smith 2352e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 2353c0aa2d19SHong Zhang { 2354c0aa2d19SHong Zhang PetscFunctionBegin; 2355c0aa2d19SHong Zhang PetscFunctionReturn(0); 2356c0aa2d19SHong Zhang } 2357c0aa2d19SHong Zhang 2358e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 2359c0aa2d19SHong Zhang { 2360c0aa2d19SHong Zhang PetscFunctionBegin; 2361c0aa2d19SHong Zhang PetscFunctionReturn(0); 2362c0aa2d19SHong Zhang } 2363c0aa2d19SHong Zhang 2364a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 23654b0e389bSBarry Smith { 23664b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data; 2367ca15aa20SStefano Zampini const PetscScalar *va; 2368ca15aa20SStefano Zampini PetscScalar *vb; 2369d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 23703a40ed3dSBarry Smith 23713a40ed3dSBarry Smith PetscFunctionBegin; 237233f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 237333f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 23749566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 23753a40ed3dSBarry Smith PetscFunctionReturn(0); 23763a40ed3dSBarry Smith } 2377aed4548fSBarry Smith PetscCheck(m == B->rmap->n && n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 23789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&va)); 23799566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(B,&vb)); 2380a5ce6ee0Svictorle if (lda1>m || lda2>m) { 23810dbb7854Svictorle for (j=0; j<n; j++) { 23829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(vb+j*lda2,va+j*lda1,m)); 2383a5ce6ee0Svictorle } 2384a5ce6ee0Svictorle } else { 23859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(vb,va,A->rmap->n*A->cmap->n)); 2386a5ce6ee0Svictorle } 23879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(B,&vb)); 23889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&va)); 23899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 23909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 2391273d9f13SBarry Smith PetscFunctionReturn(0); 2392273d9f13SBarry Smith } 2393273d9f13SBarry Smith 239475f6d85dSStefano Zampini PetscErrorCode MatSetUp_SeqDense(Mat A) 2395273d9f13SBarry Smith { 2396273d9f13SBarry Smith PetscFunctionBegin; 23979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 23989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 239918992e5dSStefano Zampini if (!A->preallocated) { 24009566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(A,NULL)); 240118992e5dSStefano Zampini } 24023a40ed3dSBarry Smith PetscFunctionReturn(0); 24034b0e389bSBarry Smith } 24044b0e389bSBarry Smith 2405ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A) 2406ba337c44SJed Brown { 24074396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 2408ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 24094396437dSToby Isaac PetscInt min = PetscMin(A->rmap->n,A->cmap->n); 2410ca15aa20SStefano Zampini PetscScalar *aa; 2411ba337c44SJed Brown 2412ba337c44SJed Brown PetscFunctionBegin; 24139566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&aa)); 2414ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 24159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&aa)); 24164396437dSToby Isaac if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]); 2417ba337c44SJed Brown PetscFunctionReturn(0); 2418ba337c44SJed Brown } 2419ba337c44SJed Brown 2420ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A) 2421ba337c44SJed Brown { 2422ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 2423ca15aa20SStefano Zampini PetscScalar *aa; 2424ba337c44SJed Brown 2425ba337c44SJed Brown PetscFunctionBegin; 24269566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&aa)); 2427ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 24289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&aa)); 2429ba337c44SJed Brown PetscFunctionReturn(0); 2430ba337c44SJed Brown } 2431ba337c44SJed Brown 2432ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 2433ba337c44SJed Brown { 2434ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 2435ca15aa20SStefano Zampini PetscScalar *aa; 2436ba337c44SJed Brown 2437ba337c44SJed Brown PetscFunctionBegin; 24389566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&aa)); 2439ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 24409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&aa)); 2441ba337c44SJed Brown PetscFunctionReturn(0); 2442ba337c44SJed Brown } 2443284134d9SBarry Smith 2444a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 24454222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 2446a9fe9ddaSSatish Balay { 2447d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 24487a3c3d58SStefano Zampini PetscBool cisdense; 2449a9fe9ddaSSatish Balay 2450ee16a9a1SHong Zhang PetscFunctionBegin; 24519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,m,n,m,n)); 24529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"")); 24537a3c3d58SStefano Zampini if (!cisdense) { 24547a3c3d58SStefano Zampini PetscBool flg; 24557a3c3d58SStefano Zampini 24569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg)); 24579566063dSJacob Faibussowitsch PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE)); 24587a3c3d58SStefano Zampini } 24599566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2460ee16a9a1SHong Zhang PetscFunctionReturn(0); 2461ee16a9a1SHong Zhang } 2462a9fe9ddaSSatish Balay 2463a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 2464a9fe9ddaSSatish Balay { 24656718818eSStefano Zampini Mat_SeqDense *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data; 24660805154bSBarry Smith PetscBLASInt m,n,k; 2467ca15aa20SStefano Zampini const PetscScalar *av,*bv; 2468ca15aa20SStefano Zampini PetscScalar *cv; 2469a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 2470a9fe9ddaSSatish Balay 2471a9fe9ddaSSatish Balay PetscFunctionBegin; 24729566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n,&m)); 24739566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n,&n)); 24749566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&k)); 247549d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 24769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&av)); 24779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&bv)); 24789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C,&cv)); 2479ca15aa20SStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 24809566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1))); 24819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&av)); 24829566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&bv)); 24839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C,&cv)); 2484a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2485a9fe9ddaSSatish Balay } 2486a9fe9ddaSSatish Balay 24874222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 248869f65d41SStefano Zampini { 248969f65d41SStefano Zampini PetscInt m=A->rmap->n,n=B->rmap->n; 24907a3c3d58SStefano Zampini PetscBool cisdense; 249169f65d41SStefano Zampini 249269f65d41SStefano Zampini PetscFunctionBegin; 24939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,m,n,m,n)); 24949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"")); 24957a3c3d58SStefano Zampini if (!cisdense) { 24967a3c3d58SStefano Zampini PetscBool flg; 24977a3c3d58SStefano Zampini 24989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg)); 24999566063dSJacob Faibussowitsch PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE)); 25007a3c3d58SStefano Zampini } 25019566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 250269f65d41SStefano Zampini PetscFunctionReturn(0); 250369f65d41SStefano Zampini } 250469f65d41SStefano Zampini 250569f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 250669f65d41SStefano Zampini { 250769f65d41SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 250869f65d41SStefano Zampini Mat_SeqDense *b = (Mat_SeqDense*)B->data; 250969f65d41SStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)C->data; 25106718818eSStefano Zampini const PetscScalar *av,*bv; 25116718818eSStefano Zampini PetscScalar *cv; 251269f65d41SStefano Zampini PetscBLASInt m,n,k; 251369f65d41SStefano Zampini PetscScalar _DOne=1.0,_DZero=0.0; 251469f65d41SStefano Zampini 251569f65d41SStefano Zampini PetscFunctionBegin; 25169566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n,&m)); 25179566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n,&n)); 25189566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n,&k)); 251949d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 25209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&av)); 25219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&bv)); 25229566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C,&cv)); 25236718818eSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 25249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&av)); 25259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&bv)); 25269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C,&cv)); 25279566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1))); 252869f65d41SStefano Zampini PetscFunctionReturn(0); 252969f65d41SStefano Zampini } 253069f65d41SStefano Zampini 25314222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 2532a9fe9ddaSSatish Balay { 2533d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 25347a3c3d58SStefano Zampini PetscBool cisdense; 2535a9fe9ddaSSatish Balay 2536ee16a9a1SHong Zhang PetscFunctionBegin; 25379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,m,n,m,n)); 25389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"")); 25397a3c3d58SStefano Zampini if (!cisdense) { 25407a3c3d58SStefano Zampini PetscBool flg; 25417a3c3d58SStefano Zampini 25429566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg)); 25439566063dSJacob Faibussowitsch PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE)); 25447a3c3d58SStefano Zampini } 25459566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2546ee16a9a1SHong Zhang PetscFunctionReturn(0); 2547ee16a9a1SHong Zhang } 2548a9fe9ddaSSatish Balay 254975648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 2550a9fe9ddaSSatish Balay { 2551a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2552a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 2553a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 25546718818eSStefano Zampini const PetscScalar *av,*bv; 25556718818eSStefano Zampini PetscScalar *cv; 25560805154bSBarry Smith PetscBLASInt m,n,k; 2557a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 2558a9fe9ddaSSatish Balay 2559a9fe9ddaSSatish Balay PetscFunctionBegin; 25609566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n,&m)); 25619566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n,&n)); 25629566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n,&k)); 256349d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 25649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&av)); 25659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&bv)); 25669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C,&cv)); 25676718818eSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 25689566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&av)); 25699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&bv)); 25709566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C,&cv)); 25719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1))); 2572a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2573a9fe9ddaSSatish Balay } 2574985db425SBarry Smith 25754222ddf1SHong Zhang /* ----------------------------------------------- */ 25764222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C) 25774222ddf1SHong Zhang { 25784222ddf1SHong Zhang PetscFunctionBegin; 25794222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense; 25804222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 25814222ddf1SHong Zhang PetscFunctionReturn(0); 25824222ddf1SHong Zhang } 25834222ddf1SHong Zhang 25844222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C) 25854222ddf1SHong Zhang { 25864222ddf1SHong Zhang PetscFunctionBegin; 25874222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense; 25884222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 25894222ddf1SHong Zhang PetscFunctionReturn(0); 25904222ddf1SHong Zhang } 25914222ddf1SHong Zhang 25924222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C) 25934222ddf1SHong Zhang { 25944222ddf1SHong Zhang PetscFunctionBegin; 25954222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense; 25964222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 25974222ddf1SHong Zhang PetscFunctionReturn(0); 25984222ddf1SHong Zhang } 25994222ddf1SHong Zhang 26004222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C) 26014222ddf1SHong Zhang { 26024222ddf1SHong Zhang Mat_Product *product = C->product; 26034222ddf1SHong Zhang 26044222ddf1SHong Zhang PetscFunctionBegin; 26054222ddf1SHong Zhang switch (product->type) { 26064222ddf1SHong Zhang case MATPRODUCT_AB: 26079566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AB(C)); 26084222ddf1SHong Zhang break; 26094222ddf1SHong Zhang case MATPRODUCT_AtB: 26109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AtB(C)); 26114222ddf1SHong Zhang break; 26124222ddf1SHong Zhang case MATPRODUCT_ABt: 26139566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_ABt(C)); 26144222ddf1SHong Zhang break; 26156718818eSStefano Zampini default: 26164222ddf1SHong Zhang break; 26174222ddf1SHong Zhang } 26184222ddf1SHong Zhang PetscFunctionReturn(0); 26194222ddf1SHong Zhang } 26204222ddf1SHong Zhang /* ----------------------------------------------- */ 26214222ddf1SHong Zhang 2622e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 2623985db425SBarry Smith { 2624985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2625d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2626985db425SBarry Smith PetscScalar *x; 2627ca15aa20SStefano Zampini const PetscScalar *aa; 2628985db425SBarry Smith 2629985db425SBarry Smith PetscFunctionBegin; 263028b400f6SJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 26319566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 26329566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&p)); 26339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&aa)); 263408401ef6SPierre Jolivet PetscCheck(p == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2635985db425SBarry Smith for (i=0; i<m; i++) { 2636985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2637985db425SBarry Smith for (j=1; j<n; j++) { 2638ca15aa20SStefano Zampini if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;} 2639985db425SBarry Smith } 2640985db425SBarry Smith } 26419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&aa)); 26429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 2643985db425SBarry Smith PetscFunctionReturn(0); 2644985db425SBarry Smith } 2645985db425SBarry Smith 2646e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 2647985db425SBarry Smith { 2648985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2649d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2650985db425SBarry Smith PetscScalar *x; 2651985db425SBarry Smith PetscReal atmp; 2652ca15aa20SStefano Zampini const PetscScalar *aa; 2653985db425SBarry Smith 2654985db425SBarry Smith PetscFunctionBegin; 265528b400f6SJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 26569566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 26579566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&p)); 26589566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&aa)); 265908401ef6SPierre Jolivet PetscCheck(p == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2660985db425SBarry Smith for (i=0; i<m; i++) { 26619189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 2662985db425SBarry Smith for (j=1; j<n; j++) { 2663ca15aa20SStefano Zampini atmp = PetscAbsScalar(aa[i+a->lda*j]); 2664985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 2665985db425SBarry Smith } 2666985db425SBarry Smith } 26679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&aa)); 26689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 2669985db425SBarry Smith PetscFunctionReturn(0); 2670985db425SBarry Smith } 2671985db425SBarry Smith 2672e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 2673985db425SBarry Smith { 2674985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2675d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2676985db425SBarry Smith PetscScalar *x; 2677ca15aa20SStefano Zampini const PetscScalar *aa; 2678985db425SBarry Smith 2679985db425SBarry Smith PetscFunctionBegin; 268028b400f6SJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 26819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&aa)); 26829566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 26839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&p)); 268408401ef6SPierre Jolivet PetscCheck(p == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2685985db425SBarry Smith for (i=0; i<m; i++) { 2686985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2687985db425SBarry Smith for (j=1; j<n; j++) { 2688ca15aa20SStefano Zampini if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;} 2689985db425SBarry Smith } 2690985db425SBarry Smith } 26919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 26929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&aa)); 2693985db425SBarry Smith PetscFunctionReturn(0); 2694985db425SBarry Smith } 2695985db425SBarry Smith 2696637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 26978d0534beSBarry Smith { 26988d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 26998d0534beSBarry Smith PetscScalar *x; 2700ca15aa20SStefano Zampini const PetscScalar *aa; 27018d0534beSBarry Smith 27028d0534beSBarry Smith PetscFunctionBegin; 270328b400f6SJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 27049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&aa)); 27059566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 27069566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(x,aa+col*a->lda,A->rmap->n)); 27079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 27089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&aa)); 27098d0534beSBarry Smith PetscFunctionReturn(0); 27108d0534beSBarry Smith } 27118d0534beSBarry Smith 2712857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat A,PetscInt type,PetscReal *reductions) 27130716a85fSBarry Smith { 27140716a85fSBarry Smith PetscInt i,j,m,n; 27151683a169SBarry Smith const PetscScalar *a; 27160716a85fSBarry Smith 27170716a85fSBarry Smith PetscFunctionBegin; 27189566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 27199566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(reductions,n)); 27209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&a)); 2721857cbf51SRichard Tran Mills if (type == NORM_2) { 27220716a85fSBarry Smith for (i=0; i<n; i++) { 27230716a85fSBarry Smith for (j=0; j<m; j++) { 2724a873a8cdSSam Reynolds reductions[i] += PetscAbsScalar(a[j]*a[j]); 27250716a85fSBarry Smith } 27260716a85fSBarry Smith a += m; 27270716a85fSBarry Smith } 2728857cbf51SRichard Tran Mills } else if (type == NORM_1) { 27290716a85fSBarry Smith for (i=0; i<n; i++) { 27300716a85fSBarry Smith for (j=0; j<m; j++) { 2731a873a8cdSSam Reynolds reductions[i] += PetscAbsScalar(a[j]); 27320716a85fSBarry Smith } 27330716a85fSBarry Smith a += m; 27340716a85fSBarry Smith } 2735857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 27360716a85fSBarry Smith for (i=0; i<n; i++) { 27370716a85fSBarry Smith for (j=0; j<m; j++) { 2738a873a8cdSSam Reynolds reductions[i] = PetscMax(PetscAbsScalar(a[j]),reductions[i]); 27390716a85fSBarry Smith } 27400716a85fSBarry Smith a += m; 27410716a85fSBarry Smith } 2742857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2743a873a8cdSSam Reynolds for (i=0; i<n; i++) { 2744a873a8cdSSam Reynolds for (j=0; j<m; j++) { 2745857cbf51SRichard Tran Mills reductions[i] += PetscRealPart(a[j]); 2746a873a8cdSSam Reynolds } 2747a873a8cdSSam Reynolds a += m; 2748a873a8cdSSam Reynolds } 2749857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2750857cbf51SRichard Tran Mills for (i=0; i<n; i++) { 2751857cbf51SRichard Tran Mills for (j=0; j<m; j++) { 2752857cbf51SRichard Tran Mills reductions[i] += PetscImaginaryPart(a[j]); 2753857cbf51SRichard Tran Mills } 2754857cbf51SRichard Tran Mills a += m; 2755857cbf51SRichard Tran Mills } 2756857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type"); 27579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&a)); 2758857cbf51SRichard Tran Mills if (type == NORM_2) { 2759a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2760857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2761a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 27620716a85fSBarry Smith } 27630716a85fSBarry Smith PetscFunctionReturn(0); 27640716a85fSBarry Smith } 27650716a85fSBarry Smith 276673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_SeqDense(Mat x,PetscRandom rctx) 276773a71a0fSBarry Smith { 276873a71a0fSBarry Smith PetscScalar *a; 2769637a0070SStefano Zampini PetscInt lda,m,n,i,j; 277073a71a0fSBarry Smith 277173a71a0fSBarry Smith PetscFunctionBegin; 27729566063dSJacob Faibussowitsch PetscCall(MatGetSize(x,&m,&n)); 27739566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(x,&lda)); 27749566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(x,&a)); 2775637a0070SStefano Zampini for (j=0; j<n; j++) { 2776637a0070SStefano Zampini for (i=0; i<m; i++) { 27779566063dSJacob Faibussowitsch PetscCall(PetscRandomGetValue(rctx,a+j*lda+i)); 2778637a0070SStefano Zampini } 277973a71a0fSBarry Smith } 27809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(x,&a)); 278173a71a0fSBarry Smith PetscFunctionReturn(0); 278273a71a0fSBarry Smith } 278373a71a0fSBarry Smith 27843b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool *missing,PetscInt *d) 27853b49f96aSBarry Smith { 27863b49f96aSBarry Smith PetscFunctionBegin; 27873b49f96aSBarry Smith *missing = PETSC_FALSE; 27883b49f96aSBarry Smith PetscFunctionReturn(0); 27893b49f96aSBarry Smith } 279073a71a0fSBarry Smith 2791ca15aa20SStefano Zampini /* vals is not const */ 2792af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals) 279386aefd0dSHong Zhang { 279486aefd0dSHong Zhang Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2795ca15aa20SStefano Zampini PetscScalar *v; 279686aefd0dSHong Zhang 279786aefd0dSHong Zhang PetscFunctionBegin; 279828b400f6SJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 27999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 2800ca15aa20SStefano Zampini *vals = v+col*a->lda; 28019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 280286aefd0dSHong Zhang PetscFunctionReturn(0); 280386aefd0dSHong Zhang } 280486aefd0dSHong Zhang 2805af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals) 280686aefd0dSHong Zhang { 280786aefd0dSHong Zhang PetscFunctionBegin; 2808a5b23f4aSJose E. Roman *vals = NULL; /* user cannot accidentally use the array later */ 280986aefd0dSHong Zhang PetscFunctionReturn(0); 281086aefd0dSHong Zhang } 2811abc3b08eSStefano Zampini 2812289bc588SBarry Smith /* -------------------------------------------------------------------*/ 2813a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense, 2814905e6a2fSBarry Smith MatGetRow_SeqDense, 2815905e6a2fSBarry Smith MatRestoreRow_SeqDense, 2816905e6a2fSBarry Smith MatMult_SeqDense, 281797304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 28187c922b88SBarry Smith MatMultTranspose_SeqDense, 28197c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822f4259b30SLisandro Dalcin NULL, 2823f4259b30SLisandro Dalcin /* 10*/ NULL, 2824905e6a2fSBarry Smith MatLUFactor_SeqDense, 2825905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 282641f059aeSBarry Smith MatSOR_SeqDense, 2827ec8511deSBarry Smith MatTranspose_SeqDense, 282897304618SKris Buschelman /* 15*/ MatGetInfo_SeqDense, 2829905e6a2fSBarry Smith MatEqual_SeqDense, 2830905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 2831905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 2832905e6a2fSBarry Smith MatNorm_SeqDense, 2833c0aa2d19SHong Zhang /* 20*/ MatAssemblyBegin_SeqDense, 2834c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 2835905e6a2fSBarry Smith MatSetOption_SeqDense, 2836905e6a2fSBarry Smith MatZeroEntries_SeqDense, 2837d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqDense, 2838f4259b30SLisandro Dalcin NULL, 2839f4259b30SLisandro Dalcin NULL, 2840f4259b30SLisandro Dalcin NULL, 2841f4259b30SLisandro Dalcin NULL, 28424994cf47SJed Brown /* 29*/ MatSetUp_SeqDense, 2843f4259b30SLisandro Dalcin NULL, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqDense, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin NULL, 2852d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqDense, 28537dae84e0SHong Zhang MatCreateSubMatrices_SeqDense, 2854f4259b30SLisandro Dalcin NULL, 28554b0e389bSBarry Smith MatGetValues_SeqDense, 2856a5ae1ecdSBarry Smith MatCopy_SeqDense, 2857d519adbfSMatthew Knepley /* 44*/ MatGetRowMax_SeqDense, 2858a5ae1ecdSBarry Smith MatScale_SeqDense, 28592f605a99SJose E. Roman MatShift_SeqDense, 2860f4259b30SLisandro Dalcin NULL, 28613f49a652SStefano Zampini MatZeroRowsColumns_SeqDense, 286273a71a0fSBarry Smith /* 49*/ MatSetRandom_SeqDense, 2863f4259b30SLisandro Dalcin NULL, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 2866f4259b30SLisandro Dalcin NULL, 2867f4259b30SLisandro Dalcin /* 54*/ NULL, 2868f4259b30SLisandro Dalcin NULL, 2869f4259b30SLisandro Dalcin NULL, 2870f4259b30SLisandro Dalcin NULL, 2871f4259b30SLisandro Dalcin NULL, 2872023c16fcSToby Isaac /* 59*/ MatCreateSubMatrix_SeqDense, 2873e03a110bSBarry Smith MatDestroy_SeqDense, 2874e03a110bSBarry Smith MatView_SeqDense, 2875f4259b30SLisandro Dalcin NULL, 2876f4259b30SLisandro Dalcin NULL, 2877f4259b30SLisandro Dalcin /* 64*/ NULL, 2878f4259b30SLisandro Dalcin NULL, 2879f4259b30SLisandro Dalcin NULL, 2880f4259b30SLisandro Dalcin NULL, 2881f4259b30SLisandro Dalcin NULL, 2882d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqDense, 2883f4259b30SLisandro Dalcin NULL, 2884f4259b30SLisandro Dalcin NULL, 2885f4259b30SLisandro Dalcin NULL, 2886f4259b30SLisandro Dalcin NULL, 2887f4259b30SLisandro Dalcin /* 74*/ NULL, 2888f4259b30SLisandro Dalcin NULL, 2889f4259b30SLisandro Dalcin NULL, 2890f4259b30SLisandro Dalcin NULL, 2891f4259b30SLisandro Dalcin NULL, 2892f4259b30SLisandro Dalcin /* 79*/ NULL, 2893f4259b30SLisandro Dalcin NULL, 2894f4259b30SLisandro Dalcin NULL, 2895f4259b30SLisandro Dalcin NULL, 28965bba2384SShri Abhyankar /* 83*/ MatLoad_SeqDense, 2897637a0070SStefano Zampini MatIsSymmetric_SeqDense, 28981cbb95d3SBarry Smith MatIsHermitian_SeqDense, 2899f4259b30SLisandro Dalcin NULL, 2900f4259b30SLisandro Dalcin NULL, 2901f4259b30SLisandro Dalcin NULL, 2902f4259b30SLisandro Dalcin /* 89*/ NULL, 2903f4259b30SLisandro Dalcin NULL, 2904a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 2905f4259b30SLisandro Dalcin NULL, 2906f4259b30SLisandro Dalcin NULL, 2907f4259b30SLisandro Dalcin /* 94*/ NULL, 2908f4259b30SLisandro Dalcin NULL, 2909f4259b30SLisandro Dalcin NULL, 291069f65d41SStefano Zampini MatMatTransposeMultNumeric_SeqDense_SeqDense, 2911f4259b30SLisandro Dalcin NULL, 29124222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_SeqDense, 2913f4259b30SLisandro Dalcin NULL, 2914f4259b30SLisandro Dalcin NULL, 2915ba337c44SJed Brown MatConjugate_SeqDense, 2916f4259b30SLisandro Dalcin NULL, 2917f4259b30SLisandro Dalcin /*104*/ NULL, 2918ba337c44SJed Brown MatRealPart_SeqDense, 2919ba337c44SJed Brown MatImaginaryPart_SeqDense, 2920f4259b30SLisandro Dalcin NULL, 2921f4259b30SLisandro Dalcin NULL, 2922f4259b30SLisandro Dalcin /*109*/ NULL, 2923f4259b30SLisandro Dalcin NULL, 29248d0534beSBarry Smith MatGetRowMin_SeqDense, 2925aabbc4fbSShri Abhyankar MatGetColumnVector_SeqDense, 29263b49f96aSBarry Smith MatMissingDiagonal_SeqDense, 2927f4259b30SLisandro Dalcin /*114*/ NULL, 2928f4259b30SLisandro Dalcin NULL, 2929f4259b30SLisandro Dalcin NULL, 2930f4259b30SLisandro Dalcin NULL, 2931f4259b30SLisandro Dalcin NULL, 2932f4259b30SLisandro Dalcin /*119*/ NULL, 2933f4259b30SLisandro Dalcin NULL, 2934f4259b30SLisandro Dalcin NULL, 2935f4259b30SLisandro Dalcin NULL, 2936f4259b30SLisandro Dalcin NULL, 2937f4259b30SLisandro Dalcin /*124*/ NULL, 2938a873a8cdSSam Reynolds MatGetColumnReductions_SeqDense, 2939f4259b30SLisandro Dalcin NULL, 2940f4259b30SLisandro Dalcin NULL, 2941f4259b30SLisandro Dalcin NULL, 2942f4259b30SLisandro Dalcin /*129*/ NULL, 2943f4259b30SLisandro Dalcin NULL, 2944f4259b30SLisandro Dalcin NULL, 294575648e8dSHong Zhang MatTransposeMatMultNumeric_SeqDense_SeqDense, 2946f4259b30SLisandro Dalcin NULL, 2947f4259b30SLisandro Dalcin /*134*/ NULL, 2948f4259b30SLisandro Dalcin NULL, 2949f4259b30SLisandro Dalcin NULL, 2950f4259b30SLisandro Dalcin NULL, 2951f4259b30SLisandro Dalcin NULL, 2952f4259b30SLisandro Dalcin /*139*/ NULL, 2953f4259b30SLisandro Dalcin NULL, 2954f4259b30SLisandro Dalcin NULL, 2955f4259b30SLisandro Dalcin NULL, 2956f4259b30SLisandro Dalcin NULL, 29574222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_SeqDense, 2958f4259b30SLisandro Dalcin /*145*/ NULL, 2959f4259b30SLisandro Dalcin NULL, 2960f4259b30SLisandro Dalcin NULL 2961985db425SBarry Smith }; 296290ace30eSBarry Smith 29634b828684SBarry Smith /*@C 2964fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 2965d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 2966d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 2967289bc588SBarry Smith 2968d083f849SBarry Smith Collective 2969db81eaa0SLois Curfman McInnes 297020563c6bSBarry Smith Input Parameters: 2971db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 29720c775827SLois Curfman McInnes . m - number of rows 297318f449edSLois Curfman McInnes . n - number of columns 29740298fd71SBarry Smith - data - optional location of matrix data in column major order. Set data=NULL for PETSc 2975dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 297620563c6bSBarry Smith 297720563c6bSBarry Smith Output Parameter: 297844cd7ae7SLois Curfman McInnes . A - the matrix 297920563c6bSBarry Smith 2980b259b22eSLois Curfman McInnes Notes: 298118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 298218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 29830298fd71SBarry Smith set data=NULL. 298418f449edSLois Curfman McInnes 2985027ccd11SLois Curfman McInnes Level: intermediate 2986027ccd11SLois Curfman McInnes 2987db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()`, `MatSetValues()` 298820563c6bSBarry Smith @*/ 29897087cfbeSBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 2990289bc588SBarry Smith { 29913a40ed3dSBarry Smith PetscFunctionBegin; 29929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 29939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,m,n)); 29949566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQDENSE)); 29959566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 2996273d9f13SBarry Smith PetscFunctionReturn(0); 2997273d9f13SBarry Smith } 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith /*@C 3000273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 3001273d9f13SBarry Smith 3002d083f849SBarry Smith Collective 3003273d9f13SBarry Smith 3004273d9f13SBarry Smith Input Parameters: 30051c4f3114SJed Brown + B - the matrix 30060298fd71SBarry Smith - data - the array (or NULL) 3007273d9f13SBarry Smith 3008273d9f13SBarry Smith Notes: 3009273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 3010273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 3011284134d9SBarry Smith need not call this routine. 3012273d9f13SBarry Smith 3013273d9f13SBarry Smith Level: intermediate 3014273d9f13SBarry Smith 3015db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()`, `MatSetValues()`, `MatDenseSetLDA()` 3016867c911aSBarry Smith 3017273d9f13SBarry Smith @*/ 30187087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 3019273d9f13SBarry Smith { 3020a23d5eceSKris Buschelman PetscFunctionBegin; 3021d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 3022cac4c232SBarry Smith PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data)); 3023a23d5eceSKris Buschelman PetscFunctionReturn(0); 3024a23d5eceSKris Buschelman } 3025a23d5eceSKris Buschelman 30267087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 3027a23d5eceSKris Buschelman { 3028ad16ce7aSStefano Zampini Mat_SeqDense *b = (Mat_SeqDense*)B->data; 3029273d9f13SBarry Smith 3030273d9f13SBarry Smith PetscFunctionBegin; 303128b400f6SJacob Faibussowitsch PetscCheck(!b->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 3032273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 3033a868139aSShri Abhyankar 30349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 30359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 303634ef9618SShri Abhyankar 3037ad16ce7aSStefano Zampini if (b->lda <= 0) b->lda = B->rmap->n; 303886d161a7SShri Abhyankar 30399e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 30409566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 30419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v)); 30429566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar))); 30432205254eSKarl Rupp 30449e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 3045273d9f13SBarry Smith } else { /* user-allocated storage */ 30469566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 3047273d9f13SBarry Smith b->v = data; 3048273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 3049273d9f13SBarry Smith } 30500450473dSBarry Smith B->assembled = PETSC_TRUE; 3051273d9f13SBarry Smith PetscFunctionReturn(0); 3052273d9f13SBarry Smith } 3053273d9f13SBarry Smith 305465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 3055cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 30568baccfbdSHong Zhang { 3057d77f618aSHong Zhang Mat mat_elemental; 30581683a169SBarry Smith const PetscScalar *array; 30591683a169SBarry Smith PetscScalar *v_colwise; 3060d77f618aSHong Zhang PetscInt M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols; 3061d77f618aSHong Zhang 30628baccfbdSHong Zhang PetscFunctionBegin; 30639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols)); 30649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&array)); 3065d77f618aSHong Zhang /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */ 3066d77f618aSHong Zhang k = 0; 3067d77f618aSHong Zhang for (j=0; j<N; j++) { 3068d77f618aSHong Zhang cols[j] = j; 3069d77f618aSHong Zhang for (i=0; i<M; i++) { 3070d77f618aSHong Zhang v_colwise[j*M+i] = array[k++]; 3071d77f618aSHong Zhang } 3072d77f618aSHong Zhang } 3073d77f618aSHong Zhang for (i=0; i<M; i++) { 3074d77f618aSHong Zhang rows[i] = i; 3075d77f618aSHong Zhang } 30769566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&array)); 3077d77f618aSHong Zhang 30789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 30799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N)); 30809566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 30819566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 3082d77f618aSHong Zhang 3083d77f618aSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 30849566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES)); 30859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 30869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 30879566063dSJacob Faibussowitsch PetscCall(PetscFree3(v_colwise,rows,cols)); 3088d77f618aSHong Zhang 3089511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 30909566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 3091d77f618aSHong Zhang } else { 3092d77f618aSHong Zhang *newmat = mat_elemental; 3093d77f618aSHong Zhang } 30948baccfbdSHong Zhang PetscFunctionReturn(0); 30958baccfbdSHong Zhang } 309665b80a83SHong Zhang #endif 30978baccfbdSHong Zhang 309817359960SJose E. Roman PetscErrorCode MatDenseSetLDA_SeqDense(Mat B,PetscInt lda) 30991b807ce4Svictorle { 31001b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 31017422da62SJose E. Roman PetscBool data; 310221a2c019SBarry Smith 31031b807ce4Svictorle PetscFunctionBegin; 31047422da62SJose E. Roman data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE); 3105aed4548fSBarry Smith PetscCheck(b->user_alloc || !data || b->lda == lda,PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage"); 310608401ef6SPierre Jolivet PetscCheck(lda >= B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %" PetscInt_FMT " must be at least matrix dimension %" PetscInt_FMT,lda,B->rmap->n); 31071b807ce4Svictorle b->lda = lda; 31081b807ce4Svictorle PetscFunctionReturn(0); 31091b807ce4Svictorle } 31101b807ce4Svictorle 3111d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3112d528f656SJakub Kruzik { 3113d528f656SJakub Kruzik PetscMPIInt size; 3114d528f656SJakub Kruzik 3115d528f656SJakub Kruzik PetscFunctionBegin; 31169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 3117d528f656SJakub Kruzik if (size == 1) { 3118d528f656SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { 31199566063dSJacob Faibussowitsch PetscCall(MatDuplicate(inmat,MAT_COPY_VALUES,outmat)); 3120d528f656SJakub Kruzik } else { 31219566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN)); 3122d528f656SJakub Kruzik } 3123d528f656SJakub Kruzik } else { 31249566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat)); 3125d528f656SJakub Kruzik } 3126d528f656SJakub Kruzik PetscFunctionReturn(0); 3127d528f656SJakub Kruzik } 3128d528f656SJakub Kruzik 31296947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v) 31306947451fSStefano Zampini { 31316947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 31326947451fSStefano Zampini 31336947451fSStefano Zampini PetscFunctionBegin; 313428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 313528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 31366947451fSStefano Zampini if (!a->cvec) { 31379566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec)); 31389566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 31396947451fSStefano Zampini } 31406947451fSStefano Zampini a->vecinuse = col + 1; 31419566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse)); 31429566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda)); 31436947451fSStefano Zampini *v = a->cvec; 31446947451fSStefano Zampini PetscFunctionReturn(0); 31456947451fSStefano Zampini } 31466947451fSStefano Zampini 31476947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v) 31486947451fSStefano Zampini { 31496947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 31506947451fSStefano Zampini 31516947451fSStefano Zampini PetscFunctionBegin; 315228b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 315328b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 31546947451fSStefano Zampini a->vecinuse = 0; 31559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse)); 31569566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 315775f6d85dSStefano Zampini if (v) *v = NULL; 31586947451fSStefano Zampini PetscFunctionReturn(0); 31596947451fSStefano Zampini } 31606947451fSStefano Zampini 31616947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v) 31626947451fSStefano Zampini { 31636947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 31646947451fSStefano Zampini 31656947451fSStefano Zampini PetscFunctionBegin; 316628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 316728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 31686947451fSStefano Zampini if (!a->cvec) { 31699566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec)); 31709566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 31716947451fSStefano Zampini } 31726947451fSStefano Zampini a->vecinuse = col + 1; 31739566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A,&a->ptrinuse)); 31749566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda)); 31759566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 31766947451fSStefano Zampini *v = a->cvec; 31776947451fSStefano Zampini PetscFunctionReturn(0); 31786947451fSStefano Zampini } 31796947451fSStefano Zampini 31806947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v) 31816947451fSStefano Zampini { 31826947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 31836947451fSStefano Zampini 31846947451fSStefano Zampini PetscFunctionBegin; 318528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 318628b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 31876947451fSStefano Zampini a->vecinuse = 0; 31889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A,&a->ptrinuse)); 31899566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 31909566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 319175f6d85dSStefano Zampini if (v) *v = NULL; 31926947451fSStefano Zampini PetscFunctionReturn(0); 31936947451fSStefano Zampini } 31946947451fSStefano Zampini 31956947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v) 31966947451fSStefano Zampini { 31976947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 31986947451fSStefano Zampini 31996947451fSStefano Zampini PetscFunctionBegin; 320028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 320128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 32026947451fSStefano Zampini if (!a->cvec) { 32039566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec)); 32049566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 32056947451fSStefano Zampini } 32066947451fSStefano Zampini a->vecinuse = col + 1; 32079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse)); 32089566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda)); 32096947451fSStefano Zampini *v = a->cvec; 32106947451fSStefano Zampini PetscFunctionReturn(0); 32116947451fSStefano Zampini } 32126947451fSStefano Zampini 32136947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v) 32146947451fSStefano Zampini { 32156947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32166947451fSStefano Zampini 32176947451fSStefano Zampini PetscFunctionBegin; 321828b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 321928b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 32206947451fSStefano Zampini a->vecinuse = 0; 32219566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse)); 32229566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 322375f6d85dSStefano Zampini if (v) *v = NULL; 32246947451fSStefano Zampini PetscFunctionReturn(0); 32256947451fSStefano Zampini } 32266947451fSStefano Zampini 32275ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 32285ea7661aSPierre Jolivet { 32295ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32305ea7661aSPierre Jolivet 32315ea7661aSPierre Jolivet PetscFunctionBegin; 323228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 323328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 32345ea7661aSPierre Jolivet if (a->cmat && cend-cbegin != a->cmat->cmap->N) { 32359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->cmat)); 32365ea7661aSPierre Jolivet } 32375ea7661aSPierre Jolivet if (!a->cmat) { 32389566063dSJacob Faibussowitsch PetscCall(MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,a->v+(size_t)cbegin*a->lda,&a->cmat)); 32399566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 32405ea7661aSPierre Jolivet } else { 32419566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->cmat,a->v+(size_t)cbegin*a->lda)); 32425ea7661aSPierre Jolivet } 32439566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->cmat,a->lda)); 32445ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 32455ea7661aSPierre Jolivet *v = a->cmat; 324675f6d85dSStefano Zampini #if defined(PETSC_HAVE_CUDA) 324775f6d85dSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 324875f6d85dSStefano Zampini #endif 32495ea7661aSPierre Jolivet PetscFunctionReturn(0); 32505ea7661aSPierre Jolivet } 32515ea7661aSPierre Jolivet 32525ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v) 32535ea7661aSPierre Jolivet { 32545ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32555ea7661aSPierre Jolivet 32565ea7661aSPierre Jolivet PetscFunctionBegin; 325728b400f6SJacob Faibussowitsch PetscCheck(a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 325828b400f6SJacob Faibussowitsch PetscCheck(a->cmat,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix"); 325908401ef6SPierre Jolivet PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 32605ea7661aSPierre Jolivet a->matinuse = 0; 32619566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->cmat)); 32625ea7661aSPierre Jolivet *v = NULL; 32635ea7661aSPierre Jolivet PetscFunctionReturn(0); 32645ea7661aSPierre Jolivet } 32655ea7661aSPierre Jolivet 32660bad9183SKris Buschelman /*MC 3267fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 32680bad9183SKris Buschelman 32690bad9183SKris Buschelman Options Database Keys: 32700bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 32710bad9183SKris Buschelman 32720bad9183SKris Buschelman Level: beginner 32730bad9183SKris Buschelman 3274db781477SPatrick Sanan .seealso: `MatCreateSeqDense()` 327589665df3SBarry Smith 32760bad9183SKris Buschelman M*/ 3277ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B) 3278273d9f13SBarry Smith { 3279273d9f13SBarry Smith Mat_SeqDense *b; 32807c334f02SBarry Smith PetscMPIInt size; 3281273d9f13SBarry Smith 3282273d9f13SBarry Smith PetscFunctionBegin; 32839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 328408401ef6SPierre Jolivet PetscCheck(size <= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 328555659b69SBarry Smith 32869566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 32879566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 328844cd7ae7SLois Curfman McInnes B->data = (void*)b; 328918f449edSLois Curfman McInnes 3290273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 32914e220ebcSLois Curfman McInnes 32929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense)); 32939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense)); 32949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense)); 32959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense)); 32969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense)); 32979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense)); 32989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense)); 32999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense)); 33009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense)); 33019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense)); 33029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense)); 33039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense)); 33049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ)); 33058baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 33069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental)); 33078baccfbdSHong Zhang #endif 3308d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 33099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 3310d24d4204SJose E. Roman #endif 33112bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 33129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA)); 33139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense)); 33149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense)); 33159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense)); 33162bf066beSStefano Zampini #endif 33179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense)); 33189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense)); 33199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense)); 33209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 33219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 332296e6d5c4SRichard Tran Mills 33239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense)); 33249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense)); 33259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense)); 33269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense)); 33279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense)); 33289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense)); 33299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense)); 33309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense)); 33319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense)); 33329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense)); 33339566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE)); 33343a40ed3dSBarry Smith PetscFunctionReturn(0); 3335289bc588SBarry Smith } 333686aefd0dSHong Zhang 333786aefd0dSHong Zhang /*@C 3338af53bab2SHong Zhang MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding. 333986aefd0dSHong Zhang 334086aefd0dSHong Zhang Not Collective 334186aefd0dSHong Zhang 33425ea7661aSPierre Jolivet Input Parameters: 334386aefd0dSHong Zhang + mat - a MATSEQDENSE or MATMPIDENSE matrix 334486aefd0dSHong Zhang - col - column index 334586aefd0dSHong Zhang 334686aefd0dSHong Zhang Output Parameter: 334786aefd0dSHong Zhang . vals - pointer to the data 334886aefd0dSHong Zhang 334986aefd0dSHong Zhang Level: intermediate 335086aefd0dSHong Zhang 3351db781477SPatrick Sanan .seealso: `MatDenseRestoreColumn()` 335286aefd0dSHong Zhang @*/ 335386aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals) 335486aefd0dSHong Zhang { 335586aefd0dSHong Zhang PetscFunctionBegin; 3356d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 3357d5ea218eSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 3358d5ea218eSStefano Zampini PetscValidPointer(vals,3); 3359cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals)); 336086aefd0dSHong Zhang PetscFunctionReturn(0); 336186aefd0dSHong Zhang } 336286aefd0dSHong Zhang 336386aefd0dSHong Zhang /*@C 336486aefd0dSHong Zhang MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn(). 336586aefd0dSHong Zhang 336686aefd0dSHong Zhang Not Collective 336786aefd0dSHong Zhang 336886aefd0dSHong Zhang Input Parameter: 336986aefd0dSHong Zhang . mat - a MATSEQDENSE or MATMPIDENSE matrix 337086aefd0dSHong Zhang 337186aefd0dSHong Zhang Output Parameter: 337286aefd0dSHong Zhang . vals - pointer to the data 337386aefd0dSHong Zhang 337486aefd0dSHong Zhang Level: intermediate 337586aefd0dSHong Zhang 3376db781477SPatrick Sanan .seealso: `MatDenseGetColumn()` 337786aefd0dSHong Zhang @*/ 337886aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals) 337986aefd0dSHong Zhang { 338086aefd0dSHong Zhang PetscFunctionBegin; 3381d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 3382d5ea218eSStefano Zampini PetscValidPointer(vals,2); 3383cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals)); 338486aefd0dSHong Zhang PetscFunctionReturn(0); 338586aefd0dSHong Zhang } 33866947451fSStefano Zampini 33870f74d2c1SSatish Balay /*@ 33886947451fSStefano Zampini MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec. 33896947451fSStefano Zampini 33906947451fSStefano Zampini Collective 33916947451fSStefano Zampini 33925ea7661aSPierre Jolivet Input Parameters: 33936947451fSStefano Zampini + mat - the Mat object 33946947451fSStefano Zampini - col - the column index 33956947451fSStefano Zampini 33966947451fSStefano Zampini Output Parameter: 33976947451fSStefano Zampini . v - the vector 33986947451fSStefano Zampini 33996947451fSStefano Zampini Notes: 34006947451fSStefano Zampini The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed. 34016947451fSStefano Zampini Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access. 34026947451fSStefano Zampini 34036947451fSStefano Zampini Level: intermediate 34046947451fSStefano Zampini 3405db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 34066947451fSStefano Zampini @*/ 34076947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v) 34086947451fSStefano Zampini { 34096947451fSStefano Zampini PetscFunctionBegin; 34106947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 34116947451fSStefano Zampini PetscValidType(A,1); 34126947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 34136947451fSStefano Zampini PetscValidPointer(v,3); 341428b400f6SJacob Faibussowitsch PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 34152cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3416cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v)); 34176947451fSStefano Zampini PetscFunctionReturn(0); 34186947451fSStefano Zampini } 34196947451fSStefano Zampini 34200f74d2c1SSatish Balay /*@ 34216947451fSStefano Zampini MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec(). 34226947451fSStefano Zampini 34236947451fSStefano Zampini Collective 34246947451fSStefano Zampini 34255ea7661aSPierre Jolivet Input Parameters: 34266947451fSStefano Zampini + mat - the Mat object 34276947451fSStefano Zampini . col - the column index 34286947451fSStefano Zampini - v - the Vec object 34296947451fSStefano Zampini 34306947451fSStefano Zampini Level: intermediate 34316947451fSStefano Zampini 3432db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 34336947451fSStefano Zampini @*/ 34346947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v) 34356947451fSStefano Zampini { 34366947451fSStefano Zampini PetscFunctionBegin; 34376947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 34386947451fSStefano Zampini PetscValidType(A,1); 34396947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 344008401ef6SPierre Jolivet PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 34412cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3442cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v)); 34436947451fSStefano Zampini PetscFunctionReturn(0); 34446947451fSStefano Zampini } 34456947451fSStefano Zampini 34460f74d2c1SSatish Balay /*@ 34476947451fSStefano Zampini MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec. 34486947451fSStefano Zampini 34496947451fSStefano Zampini Collective 34506947451fSStefano Zampini 34515ea7661aSPierre Jolivet Input Parameters: 34526947451fSStefano Zampini + mat - the Mat object 34536947451fSStefano Zampini - col - the column index 34546947451fSStefano Zampini 34556947451fSStefano Zampini Output Parameter: 34566947451fSStefano Zampini . v - the vector 34576947451fSStefano Zampini 34586947451fSStefano Zampini Notes: 34596947451fSStefano Zampini The vector is owned by PETSc and users cannot modify it. 34606947451fSStefano Zampini Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed. 34616947451fSStefano Zampini Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access. 34626947451fSStefano Zampini 34636947451fSStefano Zampini Level: intermediate 34646947451fSStefano Zampini 3465db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 34666947451fSStefano Zampini @*/ 34676947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v) 34686947451fSStefano Zampini { 34696947451fSStefano Zampini PetscFunctionBegin; 34706947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 34716947451fSStefano Zampini PetscValidType(A,1); 34726947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 34736947451fSStefano Zampini PetscValidPointer(v,3); 347428b400f6SJacob Faibussowitsch PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 34752cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3476cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v)); 34776947451fSStefano Zampini PetscFunctionReturn(0); 34786947451fSStefano Zampini } 34796947451fSStefano Zampini 34800f74d2c1SSatish Balay /*@ 34816947451fSStefano Zampini MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead(). 34826947451fSStefano Zampini 34836947451fSStefano Zampini Collective 34846947451fSStefano Zampini 34855ea7661aSPierre Jolivet Input Parameters: 34866947451fSStefano Zampini + mat - the Mat object 34876947451fSStefano Zampini . col - the column index 34886947451fSStefano Zampini - v - the Vec object 34896947451fSStefano Zampini 34906947451fSStefano Zampini Level: intermediate 34916947451fSStefano Zampini 3492db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecWrite()` 34936947451fSStefano Zampini @*/ 34946947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v) 34956947451fSStefano Zampini { 34966947451fSStefano Zampini PetscFunctionBegin; 34976947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 34986947451fSStefano Zampini PetscValidType(A,1); 34996947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 350008401ef6SPierre Jolivet PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 35012cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3502cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v)); 35036947451fSStefano Zampini PetscFunctionReturn(0); 35046947451fSStefano Zampini } 35056947451fSStefano Zampini 35060f74d2c1SSatish Balay /*@ 35076947451fSStefano Zampini MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec. 35086947451fSStefano Zampini 35096947451fSStefano Zampini Collective 35106947451fSStefano Zampini 35115ea7661aSPierre Jolivet Input Parameters: 35126947451fSStefano Zampini + mat - the Mat object 35136947451fSStefano Zampini - col - the column index 35146947451fSStefano Zampini 35156947451fSStefano Zampini Output Parameter: 35166947451fSStefano Zampini . v - the vector 35176947451fSStefano Zampini 35186947451fSStefano Zampini Notes: 35196947451fSStefano Zampini The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed. 35206947451fSStefano Zampini Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access. 35216947451fSStefano Zampini 35226947451fSStefano Zampini Level: intermediate 35236947451fSStefano Zampini 3524db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 35256947451fSStefano Zampini @*/ 35266947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v) 35276947451fSStefano Zampini { 35286947451fSStefano Zampini PetscFunctionBegin; 35296947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35306947451fSStefano Zampini PetscValidType(A,1); 35316947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 35326947451fSStefano Zampini PetscValidPointer(v,3); 353328b400f6SJacob Faibussowitsch PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 3534aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3535cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v)); 35366947451fSStefano Zampini PetscFunctionReturn(0); 35376947451fSStefano Zampini } 35386947451fSStefano Zampini 35390f74d2c1SSatish Balay /*@ 35406947451fSStefano Zampini MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite(). 35416947451fSStefano Zampini 35426947451fSStefano Zampini Collective 35436947451fSStefano Zampini 35445ea7661aSPierre Jolivet Input Parameters: 35456947451fSStefano Zampini + mat - the Mat object 35466947451fSStefano Zampini . col - the column index 35476947451fSStefano Zampini - v - the Vec object 35486947451fSStefano Zampini 35496947451fSStefano Zampini Level: intermediate 35506947451fSStefano Zampini 3551db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()` 35526947451fSStefano Zampini @*/ 35536947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v) 35546947451fSStefano Zampini { 35556947451fSStefano Zampini PetscFunctionBegin; 35566947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35576947451fSStefano Zampini PetscValidType(A,1); 35586947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 355908401ef6SPierre Jolivet PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 3560aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N); 3561cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v)); 35626947451fSStefano Zampini PetscFunctionReturn(0); 35636947451fSStefano Zampini } 35645ea7661aSPierre Jolivet 35650f74d2c1SSatish Balay /*@ 35665ea7661aSPierre Jolivet MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat. 35675ea7661aSPierre Jolivet 35685ea7661aSPierre Jolivet Collective 35695ea7661aSPierre Jolivet 35705ea7661aSPierre Jolivet Input Parameters: 35715ea7661aSPierre Jolivet + mat - the Mat object 35725ea7661aSPierre Jolivet . cbegin - the first index in the block 35732cf15c64SPierre Jolivet - cend - the index past the last one in the block 35745ea7661aSPierre Jolivet 35755ea7661aSPierre Jolivet Output Parameter: 35765ea7661aSPierre Jolivet . v - the matrix 35775ea7661aSPierre Jolivet 35785ea7661aSPierre Jolivet Notes: 35795ea7661aSPierre Jolivet The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed. 35805ea7661aSPierre Jolivet 35815ea7661aSPierre Jolivet Level: intermediate 35825ea7661aSPierre Jolivet 3583db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreSubMatrix()` 35845ea7661aSPierre Jolivet @*/ 35855ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 35865ea7661aSPierre Jolivet { 35875ea7661aSPierre Jolivet PetscFunctionBegin; 35885ea7661aSPierre Jolivet PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35895ea7661aSPierre Jolivet PetscValidType(A,1); 35905ea7661aSPierre Jolivet PetscValidLogicalCollectiveInt(A,cbegin,2); 35915ea7661aSPierre Jolivet PetscValidLogicalCollectiveInt(A,cend,3); 35925ea7661aSPierre Jolivet PetscValidPointer(v,4); 359328b400f6SJacob Faibussowitsch PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 35942cf15c64SPierre Jolivet PetscCheck(cbegin >= 0 && cbegin < A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",cbegin,A->cmap->N); 35952cf15c64SPierre Jolivet PetscCheck(cend > cbegin && cend <= A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %" PetscInt_FMT ", should be in (%" PetscInt_FMT ",%" PetscInt_FMT "]",cend,cbegin,A->cmap->N); 3596cac4c232SBarry Smith PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v)); 35975ea7661aSPierre Jolivet PetscFunctionReturn(0); 35985ea7661aSPierre Jolivet } 35995ea7661aSPierre Jolivet 36000f74d2c1SSatish Balay /*@ 36015ea7661aSPierre Jolivet MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix(). 36025ea7661aSPierre Jolivet 36035ea7661aSPierre Jolivet Collective 36045ea7661aSPierre Jolivet 36055ea7661aSPierre Jolivet Input Parameters: 36065ea7661aSPierre Jolivet + mat - the Mat object 36075ea7661aSPierre Jolivet - v - the Mat object 36085ea7661aSPierre Jolivet 36095ea7661aSPierre Jolivet Level: intermediate 36105ea7661aSPierre Jolivet 3611db781477SPatrick Sanan .seealso: `MATDENSE`, `MATDENSECUDA`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseGetSubMatrix()` 36125ea7661aSPierre Jolivet @*/ 36135ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v) 36145ea7661aSPierre Jolivet { 36155ea7661aSPierre Jolivet PetscFunctionBegin; 36165ea7661aSPierre Jolivet PetscValidHeaderSpecific(A,MAT_CLASSID,1); 36175ea7661aSPierre Jolivet PetscValidType(A,1); 36185ea7661aSPierre Jolivet PetscValidPointer(v,2); 3619cac4c232SBarry Smith PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v)); 36205ea7661aSPierre Jolivet PetscFunctionReturn(0); 36215ea7661aSPierre Jolivet } 36228a9c020eSBarry Smith 36238a9c020eSBarry Smith #include <petscblaslapack.h> 36248a9c020eSBarry Smith #include <petsc/private/kernels/blockinvert.h> 36258a9c020eSBarry Smith 36268a9c020eSBarry Smith PetscErrorCode MatSeqDenseInvert(Mat A) 36278a9c020eSBarry Smith { 36288a9c020eSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*) A->data; 36298a9c020eSBarry Smith PetscInt bs = A->rmap->n; 36308a9c020eSBarry Smith MatScalar *values = a->v; 36318a9c020eSBarry Smith const PetscReal shift = 0.0; 36328a9c020eSBarry Smith PetscBool allowzeropivot = PetscNot(A->erroriffailure),zeropivotdetected=PETSC_FALSE; 36338a9c020eSBarry Smith 36348a9c020eSBarry Smith PetscFunctionBegin; 36358a9c020eSBarry Smith /* factor and invert each block */ 36368a9c020eSBarry Smith switch (bs) { 36378a9c020eSBarry Smith case 1: 36388a9c020eSBarry Smith values[0] = (PetscScalar)1.0 / (values[0] + shift); 36398a9c020eSBarry Smith break; 36408a9c020eSBarry Smith case 2: 36418a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_2(values,shift,allowzeropivot,&zeropivotdetected)); 36428a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36438a9c020eSBarry Smith break; 36448a9c020eSBarry Smith case 3: 36458a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_3(values,shift,allowzeropivot,&zeropivotdetected)); 36468a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36478a9c020eSBarry Smith break; 36488a9c020eSBarry Smith case 4: 36498a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_4(values,shift,allowzeropivot,&zeropivotdetected)); 36508a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36518a9c020eSBarry Smith break; 36528a9c020eSBarry Smith case 5: 36538a9c020eSBarry Smith { 36548a9c020eSBarry Smith PetscScalar work[25]; 36558a9c020eSBarry Smith PetscInt ipvt[5]; 36568a9c020eSBarry Smith 36578a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_5(values,ipvt,work,shift,allowzeropivot,&zeropivotdetected)); 36588a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36598a9c020eSBarry Smith } 36608a9c020eSBarry Smith break; 36618a9c020eSBarry Smith case 6: 36628a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_6(values,shift,allowzeropivot,&zeropivotdetected)); 36638a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36648a9c020eSBarry Smith break; 36658a9c020eSBarry Smith case 7: 36668a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_7(values,shift,allowzeropivot,&zeropivotdetected)); 36678a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36688a9c020eSBarry Smith break; 36698a9c020eSBarry Smith default: 36708a9c020eSBarry Smith { 36718a9c020eSBarry Smith PetscInt *v_pivots,*IJ,j; 36728a9c020eSBarry Smith PetscScalar *v_work; 36738a9c020eSBarry Smith 36748a9c020eSBarry Smith PetscCall(PetscMalloc3(bs,&v_work,bs,&v_pivots,bs,&IJ)); 36758a9c020eSBarry Smith for (j=0; j<bs; j++) { 36768a9c020eSBarry Smith IJ[j] = j; 36778a9c020eSBarry Smith } 36788a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A(bs,values,v_pivots,v_work,allowzeropivot,&zeropivotdetected)); 36798a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 36808a9c020eSBarry Smith PetscCall(PetscFree3(v_work,v_pivots,IJ)); 36818a9c020eSBarry Smith } 36828a9c020eSBarry Smith } 36838a9c020eSBarry Smith PetscFunctionReturn(0); 36848a9c020eSBarry Smith } 3685