167e560aaSBarry Smith /* 267e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 347d993e7Ssuyashtn Portions of this code are under: 447d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 7dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 8cd3f9d89SJunchao Zhang #include <../src/mat/impls/dense/mpi/mpidense.h> 9c6db04a5SJed Brown #include <petscblaslapack.h> 106a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> 11b2573a8aSBarry Smith 12d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian) 13d71ae5a4SJacob Faibussowitsch { 148c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 158c178816SStefano Zampini PetscInt j, k, n = A->rmap->n; 16ca15aa20SStefano Zampini PetscScalar *v; 178c178816SStefano Zampini 188c178816SStefano Zampini PetscFunctionBegin; 1908401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot symmetrize a rectangular matrix"); 209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 218c178816SStefano Zampini if (!hermitian) { 228c178816SStefano Zampini for (k = 0; k < n; k++) { 23ad540459SPierre Jolivet for (j = k; j < n; j++) v[j * mat->lda + k] = v[k * mat->lda + j]; 248c178816SStefano Zampini } 258c178816SStefano Zampini } else { 268c178816SStefano Zampini for (k = 0; k < n; k++) { 27ad540459SPierre Jolivet for (j = k; j < n; j++) v[j * mat->lda + k] = PetscConj(v[k * mat->lda + j]); 288c178816SStefano Zampini } 298c178816SStefano Zampini } 309566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 328c178816SStefano Zampini } 338c178816SStefano Zampini 34ff6a9541SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A) 35d71ae5a4SJacob Faibussowitsch { 368c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 378c178816SStefano Zampini PetscBLASInt info, n; 388c178816SStefano Zampini 398c178816SStefano Zampini PetscFunctionBegin; 403ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 419566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 428c178816SStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 4328b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 448c178816SStefano Zampini if (!mat->fwork) { 458c178816SStefano Zampini mat->lfwork = n; 469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 478c178816SStefano Zampini } 489566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 49792fecdfSBarry Smith PetscCallBLAS("LAPACKgetri", LAPACKgetri_(&n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 509566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 528c178816SStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 53b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 549566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 55792fecdfSBarry Smith PetscCallBLAS("LAPACKpotri", LAPACKpotri_("L", &n, mat->v, &mat->lda, &info)); 569566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 579566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE)); 588c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX) 59b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 6028b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 6128b400f6SJacob Faibussowitsch PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present"); 629566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 63792fecdfSBarry Smith PetscCallBLAS("LAPACKhetri", LAPACKhetri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info)); 649566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 659566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE)); 668c178816SStefano Zampini #endif 678c178816SStefano Zampini } else { /* symmetric case */ 6828b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 6928b400f6SJacob Faibussowitsch PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present"); 709566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 71792fecdfSBarry Smith PetscCallBLAS("LAPACKsytri", LAPACKsytri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info)); 729566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 739566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_FALSE)); 748c178816SStefano Zampini } 7528b400f6SJacob Faibussowitsch PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad Inversion: zero pivot in row %" PetscInt_FMT, (PetscInt)info - 1); 769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 778c178816SStefano Zampini } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix must be factored to solve"); 788c178816SStefano Zampini 798c178816SStefano Zampini A->ops->solve = NULL; 808c178816SStefano Zampini A->ops->matsolve = NULL; 818c178816SStefano Zampini A->ops->solvetranspose = NULL; 828c178816SStefano Zampini A->ops->matsolvetranspose = NULL; 838c178816SStefano Zampini A->ops->solveadd = NULL; 848c178816SStefano Zampini A->ops->solvetransposeadd = NULL; 858c178816SStefano Zampini A->factortype = MAT_FACTOR_NONE; 869566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 888c178816SStefano Zampini } 898c178816SStefano Zampini 90d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 91d71ae5a4SJacob Faibussowitsch { 923f49a652SStefano Zampini Mat_SeqDense *l = (Mat_SeqDense *)A->data; 933f49a652SStefano Zampini PetscInt m = l->lda, n = A->cmap->n, r = A->rmap->n, i, j; 94ca15aa20SStefano Zampini PetscScalar *slot, *bb, *v; 953f49a652SStefano Zampini const PetscScalar *xx; 963f49a652SStefano Zampini 973f49a652SStefano Zampini PetscFunctionBegin; 9876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 993f49a652SStefano Zampini for (i = 0; i < N; i++) { 10008401ef6SPierre Jolivet PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed"); 10108401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n); 10208401ef6SPierre Jolivet PetscCheck(rows[i] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col %" PetscInt_FMT " requested to be zeroed greater than or equal number of cols %" PetscInt_FMT, rows[i], A->cmap->n); 1033f49a652SStefano Zampini } 10476bd3646SJed Brown } 1053ba16761SJacob Faibussowitsch if (!N) PetscFunctionReturn(PETSC_SUCCESS); 1063f49a652SStefano Zampini 1073f49a652SStefano Zampini /* fix right hand side if needed */ 1083f49a652SStefano Zampini if (x && b) { 1096c4d906cSStefano Zampini Vec xt; 1106c4d906cSStefano Zampini 11108401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 1129566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &xt)); 1139566063dSJacob Faibussowitsch PetscCall(VecCopy(x, xt)); 1149566063dSJacob Faibussowitsch PetscCall(VecScale(xt, -1.0)); 1159566063dSJacob Faibussowitsch PetscCall(MatMultAdd(A, xt, b, b)); 1169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xt)); 1179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 1189566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 1193f49a652SStefano Zampini for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]]; 1209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 1219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 1223f49a652SStefano Zampini } 1233f49a652SStefano Zampini 1249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1253f49a652SStefano Zampini for (i = 0; i < N; i++) { 126ca15aa20SStefano Zampini slot = v + rows[i] * m; 1279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(slot, r)); 1283f49a652SStefano Zampini } 1293f49a652SStefano Zampini for (i = 0; i < N; i++) { 130ca15aa20SStefano Zampini slot = v + rows[i]; 1319371c9d4SSatish Balay for (j = 0; j < n; j++) { 1329371c9d4SSatish Balay *slot = 0.0; 1339371c9d4SSatish Balay slot += m; 1349371c9d4SSatish Balay } 1353f49a652SStefano Zampini } 1363f49a652SStefano Zampini if (diag != 0.0) { 13708401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 1383f49a652SStefano Zampini for (i = 0; i < N; i++) { 139ca15aa20SStefano Zampini slot = v + (m + 1) * rows[i]; 1403f49a652SStefano Zampini *slot = diag; 1413f49a652SStefano Zampini } 1423f49a652SStefano Zampini } 1439566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 1443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1453f49a652SStefano Zampini } 1463f49a652SStefano Zampini 147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A, Mat P, Mat C) 148d71ae5a4SJacob Faibussowitsch { 149abc3b08eSStefano Zampini Mat_SeqDense *c = (Mat_SeqDense *)(C->data); 150abc3b08eSStefano Zampini 151abc3b08eSStefano Zampini PetscFunctionBegin; 152ca15aa20SStefano Zampini if (c->ptapwork) { 1539566063dSJacob Faibussowitsch PetscCall((*C->ops->matmultnumeric)(A, P, c->ptapwork)); 1549566063dSJacob Faibussowitsch PetscCall((*C->ops->transposematmultnumeric)(P, c->ptapwork, C)); 1554222ddf1SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Must call MatPtAPSymbolic_SeqDense_SeqDense() first"); 1563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 157abc3b08eSStefano Zampini } 158abc3b08eSStefano Zampini 159d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A, Mat P, PetscReal fill, Mat C) 160d71ae5a4SJacob Faibussowitsch { 161abc3b08eSStefano Zampini Mat_SeqDense *c; 16247d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 163abc3b08eSStefano Zampini 164abc3b08eSStefano Zampini PetscFunctionBegin; 1659566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, P->cmap->n, P->cmap->n, P->cmap->N, P->cmap->N)); 16647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 1679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 16847d993e7Ssuyashtn #elif (PETSC_HAVE_HIP) 16947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 17047d993e7Ssuyashtn #endif 17147d993e7Ssuyashtn 1727a3c3d58SStefano Zampini if (!cisdense) { 1737a3c3d58SStefano Zampini PetscBool flg; 1747a3c3d58SStefano Zampini 1759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)P, ((PetscObject)A)->type_name, &flg)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 1777a3c3d58SStefano Zampini } 1789566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 1794222ddf1SHong Zhang c = (Mat_SeqDense *)C->data; 1809566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &c->ptapwork)); 1819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(c->ptapwork, A->rmap->n, P->cmap->n, A->rmap->N, P->cmap->N)); 1829566063dSJacob Faibussowitsch PetscCall(MatSetType(c->ptapwork, ((PetscObject)C)->type_name)); 1839566063dSJacob Faibussowitsch PetscCall(MatSetUp(c->ptapwork)); 1843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 185abc3b08eSStefano Zampini } 186abc3b08eSStefano Zampini 187d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 188d71ae5a4SJacob Faibussowitsch { 189a13144ffSStefano Zampini Mat B = NULL; 190b49cda9fSStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 191b49cda9fSStefano Zampini Mat_SeqDense *b; 192b49cda9fSStefano Zampini PetscInt *ai = a->i, *aj = a->j, m = A->rmap->N, n = A->cmap->N, i; 1932e5835c6SStefano Zampini const MatScalar *av; 194a13144ffSStefano Zampini PetscBool isseqdense; 195b49cda9fSStefano Zampini 196b49cda9fSStefano Zampini PetscFunctionBegin; 197a13144ffSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 1989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)*newmat, MATSEQDENSE, &isseqdense)); 19928b400f6SJacob Faibussowitsch PetscCheck(isseqdense, PetscObjectComm((PetscObject)*newmat), PETSC_ERR_USER, "Cannot reuse matrix of type %s", ((PetscObject)(*newmat))->type_name); 200a13144ffSStefano Zampini } 201a13144ffSStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 2029566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n)); 2049566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQDENSE)); 2059566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, NULL)); 206b49cda9fSStefano Zampini b = (Mat_SeqDense *)(B->data); 207a13144ffSStefano Zampini } else { 208a13144ffSStefano Zampini b = (Mat_SeqDense *)((*newmat)->data); 2099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->v, m * n)); 210a13144ffSStefano Zampini } 2119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &av)); 212b49cda9fSStefano Zampini for (i = 0; i < m; i++) { 213b49cda9fSStefano Zampini PetscInt j; 214b49cda9fSStefano Zampini for (j = 0; j < ai[1] - ai[0]; j++) { 215b49cda9fSStefano Zampini b->v[*aj * m + i] = *av; 216b49cda9fSStefano Zampini aj++; 217b49cda9fSStefano Zampini av++; 218b49cda9fSStefano Zampini } 219b49cda9fSStefano Zampini ai++; 220b49cda9fSStefano Zampini } 2219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &av)); 222b49cda9fSStefano Zampini 223511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 2269566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 227b49cda9fSStefano Zampini } else { 228a13144ffSStefano Zampini if (B) *newmat = B; 2299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*newmat, MAT_FINAL_ASSEMBLY)); 2309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*newmat, MAT_FINAL_ASSEMBLY)); 231b49cda9fSStefano Zampini } 2323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 233b49cda9fSStefano Zampini } 234b49cda9fSStefano Zampini 235d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 236d71ae5a4SJacob Faibussowitsch { 2376d4ec7b0SPierre Jolivet Mat B = NULL; 2386a63e612SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2399399e1b8SMatthew G. Knepley PetscInt i, j; 2409399e1b8SMatthew G. Knepley PetscInt *rows, *nnz; 2419399e1b8SMatthew G. Knepley MatScalar *aa = a->v, *vals; 2426a63e612SBarry Smith 2436a63e612SBarry Smith PetscFunctionBegin; 2449566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(A->rmap->n, &rows, A->rmap->n, &nnz, A->rmap->n, &vals)); 2456d4ec7b0SPierre Jolivet if (reuse != MAT_REUSE_MATRIX) { 2469566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 2489566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 2499399e1b8SMatthew G. Knepley for (j = 0; j < A->cmap->n; j++) { 2509371c9d4SSatish Balay for (i = 0; i < A->rmap->n; i++) 2519371c9d4SSatish Balay if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i]; 2526a63e612SBarry Smith aa += a->lda; 2536a63e612SBarry Smith } 2549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, PETSC_DETERMINE, nnz)); 2556d4ec7b0SPierre Jolivet } else B = *newmat; 2569399e1b8SMatthew G. Knepley aa = a->v; 2579399e1b8SMatthew G. Knepley for (j = 0; j < A->cmap->n; j++) { 2589399e1b8SMatthew G. Knepley PetscInt numRows = 0; 2599371c9d4SSatish Balay for (i = 0; i < A->rmap->n; i++) 2609371c9d4SSatish Balay if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) { 2619371c9d4SSatish Balay rows[numRows] = i; 2629371c9d4SSatish Balay vals[numRows++] = aa[i]; 2639371c9d4SSatish Balay } 2649566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, numRows, rows, 1, &j, vals, INSERT_VALUES)); 2659399e1b8SMatthew G. Knepley aa += a->lda; 2669399e1b8SMatthew G. Knepley } 2679566063dSJacob Faibussowitsch PetscCall(PetscFree3(rows, nnz, vals)); 2689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 2706a63e612SBarry Smith 271511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2729566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 2736d4ec7b0SPierre Jolivet } else if (reuse != MAT_REUSE_MATRIX) *newmat = B; 2743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2756a63e612SBarry Smith } 2766a63e612SBarry Smith 277d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_SeqDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 278d71ae5a4SJacob Faibussowitsch { 2791987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense *)X->data, *y = (Mat_SeqDense *)Y->data; 280ca15aa20SStefano Zampini const PetscScalar *xv; 281ca15aa20SStefano Zampini PetscScalar *yv; 28223fff9afSBarry Smith PetscBLASInt N, m, ldax = 0, lday = 0, one = 1; 2833a40ed3dSBarry Smith 2843a40ed3dSBarry Smith PetscFunctionBegin; 2859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(X, &xv)); 2869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(Y, &yv)); 2879566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n * X->cmap->n, &N)); 2889566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n, &m)); 2899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->lda, &ldax)); 2909566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(y->lda, &lday)); 291a5ce6ee0Svictorle if (ldax > m || lday > m) { 292ca15aa20SStefano Zampini PetscInt j; 293ca15aa20SStefano Zampini 29448a46eb9SPierre Jolivet for (j = 0; j < X->cmap->n; j++) PetscCallBLAS("BLASaxpy", BLASaxpy_(&m, &alpha, xv + j * ldax, &one, yv + j * lday, &one)); 295a5ce6ee0Svictorle } else { 296792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&N, &alpha, xv, &one, yv, &one)); 297a5ce6ee0Svictorle } 2989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(X, &xv)); 2999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(Y, &yv)); 3009566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(2.0 * N - 1, 0))); 3013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3021987afe7SBarry Smith } 3031987afe7SBarry Smith 304d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetInfo_SeqDense(Mat A, MatInfoType flag, MatInfo *info) 305d71ae5a4SJacob Faibussowitsch { 306ca15aa20SStefano Zampini PetscLogDouble N = A->rmap->n * A->cmap->n; 3073a40ed3dSBarry Smith 3083a40ed3dSBarry Smith PetscFunctionBegin; 3094e220ebcSLois Curfman McInnes info->block_size = 1.0; 310ca15aa20SStefano Zampini info->nz_allocated = N; 311ca15aa20SStefano Zampini info->nz_used = N; 312ca15aa20SStefano Zampini info->nz_unneeded = 0; 313ca15aa20SStefano Zampini info->assemblies = A->num_ass; 3144e220ebcSLois Curfman McInnes info->mallocs = 0; 3154dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 3164e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 3174e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 3184e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 3193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 320289bc588SBarry Smith } 321289bc588SBarry Smith 322d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqDense(Mat A, PetscScalar alpha) 323d71ae5a4SJacob Faibussowitsch { 324273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 325ca15aa20SStefano Zampini PetscScalar *v; 32623fff9afSBarry Smith PetscBLASInt one = 1, j, nz, lda = 0; 32780cd9d93SLois Curfman McInnes 3283a40ed3dSBarry Smith PetscFunctionBegin; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 3309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->lda, &lda)); 331d0f46423SBarry Smith if (lda > A->rmap->n) { 3329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &nz)); 33348a46eb9SPierre Jolivet for (j = 0; j < A->cmap->n; j++) PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v + j * lda, &one)); 334a5ce6ee0Svictorle } else { 3359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n * A->cmap->n, &nz)); 336792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v, &one)); 337a5ce6ee0Svictorle } 33804cbc005SJose E. Roman PetscCall(PetscLogFlops(A->rmap->n * A->cmap->n)); 3399566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 3403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34180cd9d93SLois Curfman McInnes } 34280cd9d93SLois Curfman McInnes 343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqDense(Mat A, PetscScalar alpha) 344d71ae5a4SJacob Faibussowitsch { 3452f605a99SJose E. Roman Mat_SeqDense *a = (Mat_SeqDense *)A->data; 3462f605a99SJose E. Roman PetscScalar *v; 3472f605a99SJose E. Roman PetscInt j, k; 3482f605a99SJose E. Roman 3492f605a99SJose E. Roman PetscFunctionBegin; 3502f605a99SJose E. Roman PetscCall(MatDenseGetArray(A, &v)); 3512f605a99SJose E. Roman k = PetscMin(A->rmap->n, A->cmap->n); 3522f605a99SJose E. Roman for (j = 0; j < k; j++) v[j + j * a->lda] += alpha; 3532f605a99SJose E. Roman PetscCall(PetscLogFlops(k)); 3542f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(A, &v)); 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3562f605a99SJose E. Roman } 3572f605a99SJose E. Roman 358d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsHermitian_SeqDense(Mat A, PetscReal rtol, PetscBool *fl) 359d71ae5a4SJacob Faibussowitsch { 3601cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 361ca15aa20SStefano Zampini PetscInt i, j, m = A->rmap->n, N = a->lda; 362ca15aa20SStefano Zampini const PetscScalar *v; 3631cbb95d3SBarry Smith 3641cbb95d3SBarry Smith PetscFunctionBegin; 3651cbb95d3SBarry Smith *fl = PETSC_FALSE; 3663ba16761SJacob Faibussowitsch if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 3679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 3681cbb95d3SBarry Smith for (i = 0; i < m; i++) { 369ca15aa20SStefano Zampini for (j = i; j < m; j++) { 370ad540459SPierre Jolivet if (PetscAbsScalar(v[i + j * N] - PetscConj(v[j + i * N])) > rtol) goto restore; 3711cbb95d3SBarry Smith } 372637a0070SStefano Zampini } 3731cbb95d3SBarry Smith *fl = PETSC_TRUE; 374637a0070SStefano Zampini restore: 3759566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 3763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377637a0070SStefano Zampini } 378637a0070SStefano Zampini 379d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_SeqDense(Mat A, PetscReal rtol, PetscBool *fl) 380d71ae5a4SJacob Faibussowitsch { 381637a0070SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 382637a0070SStefano Zampini PetscInt i, j, m = A->rmap->n, N = a->lda; 383637a0070SStefano Zampini const PetscScalar *v; 384637a0070SStefano Zampini 385637a0070SStefano Zampini PetscFunctionBegin; 386637a0070SStefano Zampini *fl = PETSC_FALSE; 3873ba16761SJacob Faibussowitsch if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 3889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 389637a0070SStefano Zampini for (i = 0; i < m; i++) { 390637a0070SStefano Zampini for (j = i; j < m; j++) { 391ad540459SPierre Jolivet if (PetscAbsScalar(v[i + j * N] - v[j + i * N]) > rtol) goto restore; 392637a0070SStefano Zampini } 393637a0070SStefano Zampini } 394637a0070SStefano Zampini *fl = PETSC_TRUE; 395637a0070SStefano Zampini restore: 3969566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3981cbb95d3SBarry Smith } 3991cbb95d3SBarry Smith 400d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi, Mat A, MatDuplicateOption cpvalues) 401d71ae5a4SJacob Faibussowitsch { 402ca15aa20SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 40323fc5dcaSStefano Zampini PetscInt lda = (PetscInt)mat->lda, j, m, nlda = lda; 40475f6d85dSStefano Zampini PetscBool isdensecpu; 405b24902e0SBarry Smith 406b24902e0SBarry Smith PetscFunctionBegin; 4079566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &newi->rmap)); 4089566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &newi->cmap)); 40923fc5dcaSStefano Zampini if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */ 4109566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(newi, lda)); 41123fc5dcaSStefano Zampini } 4129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)newi, MATSEQDENSE, &isdensecpu)); 4139566063dSJacob Faibussowitsch if (isdensecpu) PetscCall(MatSeqDenseSetPreallocation(newi, NULL)); 414b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 415ca15aa20SStefano Zampini const PetscScalar *av; 416ca15aa20SStefano Zampini PetscScalar *v; 417ca15aa20SStefano Zampini 4189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 4199566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(newi, &v)); 4209566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newi, &nlda)); 421d0f46423SBarry Smith m = A->rmap->n; 42223fc5dcaSStefano Zampini if (lda > m || nlda > m) { 42348a46eb9SPierre Jolivet for (j = 0; j < A->cmap->n; j++) PetscCall(PetscArraycpy(v + j * nlda, av + j * lda, m)); 424b24902e0SBarry Smith } else { 4259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, av, A->rmap->n * A->cmap->n)); 426b24902e0SBarry Smith } 4279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(newi, &v)); 4289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 429b24902e0SBarry Smith } 4303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 431b24902e0SBarry Smith } 432b24902e0SBarry Smith 433d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 434d71ae5a4SJacob Faibussowitsch { 4353a40ed3dSBarry Smith PetscFunctionBegin; 4369566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), newmat)); 4379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*newmat, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 4389566063dSJacob Faibussowitsch PetscCall(MatSetType(*newmat, ((PetscObject)A)->type_name)); 4399566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(*newmat, A, cpvalues)); 4403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441b24902e0SBarry Smith } 442b24902e0SBarry Smith 443d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 444d71ae5a4SJacob Faibussowitsch { 445c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4464396437dSToby Isaac PetscBLASInt info; 44767e560aaSBarry Smith 4483a40ed3dSBarry Smith PetscFunctionBegin; 4499566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 450792fecdfSBarry Smith PetscCallBLAS("LAPACKgetrs", LAPACKgetrs_(T ? "T" : "N", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4519566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 45205fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "GETRS - Bad solve %d", (int)info); 4539566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m))); 4543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4554396437dSToby Isaac } 4564396437dSToby Isaac 4574396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat); 4584396437dSToby Isaac 459d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 460d71ae5a4SJacob Faibussowitsch { 4614396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4624396437dSToby Isaac PetscBLASInt info; 4634396437dSToby Isaac 4644396437dSToby Isaac PetscFunctionBegin; 465b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 4669566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 4679566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 468792fecdfSBarry Smith PetscCallBLAS("LAPACKpotrs", LAPACKpotrs_("L", &m, &nrhs, mat->v, &mat->lda, x, &m, &info)); 4699566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 47005fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "POTRS Bad solve %d", (int)info); 4719566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 472a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 473b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 4749566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 4759566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 476792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrs", LAPACKhetrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4779566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 47805fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "HETRS Bad solve %d", (int)info); 4799566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 480a49dc2a2SStefano Zampini #endif 481a49dc2a2SStefano Zampini } else { /* symmetric case */ 4829566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 483792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrs", LAPACKsytrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4849566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 48505fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "SYTRS Bad solve %d", (int)info); 486a49dc2a2SStefano Zampini } 4879566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m))); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4894396437dSToby Isaac } 49085e2c93fSHong Zhang 491d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 492d71ae5a4SJacob Faibussowitsch { 4934396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4944396437dSToby Isaac PetscBLASInt info; 4954396437dSToby Isaac char trans; 4964396437dSToby Isaac 4974396437dSToby Isaac PetscFunctionBegin; 4984905a7bcSToby Isaac if (PetscDefined(USE_COMPLEX)) { 4994905a7bcSToby Isaac trans = 'C'; 5004905a7bcSToby Isaac } else { 5014905a7bcSToby Isaac trans = 'T'; 5024905a7bcSToby Isaac } 5039566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 50405fcb23eSStefano Zampini { /* lwork depends on the number of right-hand sides */ 50505fcb23eSStefano Zampini PetscBLASInt nlfwork, lfwork = -1; 50605fcb23eSStefano Zampini PetscScalar fwork; 50705fcb23eSStefano Zampini 508792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info)); 50905fcb23eSStefano Zampini nlfwork = (PetscBLASInt)PetscRealPart(fwork); 51005fcb23eSStefano Zampini if (nlfwork > mat->lfwork) { 51105fcb23eSStefano Zampini mat->lfwork = nlfwork; 51205fcb23eSStefano Zampini PetscCall(PetscFree(mat->fwork)); 51305fcb23eSStefano Zampini PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 51405fcb23eSStefano Zampini } 51505fcb23eSStefano Zampini } 516792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info)); 5179566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 51805fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %d", (int)info); 5199566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 520792fecdfSBarry Smith PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "N", "N", &mat->rank, &nrhs, mat->v, &mat->lda, x, &ldx, &info)); 5219566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 52205fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %d", (int)info); 5234905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 524ad540459SPierre Jolivet for (PetscInt i = mat->rank; i < k; i++) x[j * ldx + i] = 0.; 5254905a7bcSToby Isaac } 5269566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank)))); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5284905a7bcSToby Isaac } 5294905a7bcSToby Isaac 530d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 531d71ae5a4SJacob Faibussowitsch { 5324396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 5334396437dSToby Isaac PetscBLASInt info; 5344396437dSToby Isaac 5354396437dSToby Isaac PetscFunctionBegin; 5364396437dSToby Isaac if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) { 5379566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 538792fecdfSBarry Smith PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "T", "N", &m, &nrhs, mat->v, &mat->lda, x, &ldx, &info)); 5399566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 54005fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %d", (int)info); 5419566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 54205fcb23eSStefano Zampini { /* lwork depends on the number of right-hand sides */ 54305fcb23eSStefano Zampini PetscBLASInt nlfwork, lfwork = -1; 54405fcb23eSStefano Zampini PetscScalar fwork; 54505fcb23eSStefano Zampini 546792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info)); 54705fcb23eSStefano Zampini nlfwork = (PetscBLASInt)PetscRealPart(fwork); 54805fcb23eSStefano Zampini if (nlfwork > mat->lfwork) { 54905fcb23eSStefano Zampini mat->lfwork = nlfwork; 55005fcb23eSStefano Zampini PetscCall(PetscFree(mat->fwork)); 55105fcb23eSStefano Zampini PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 55205fcb23eSStefano Zampini } 55305fcb23eSStefano Zampini } 5549566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 555792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info)); 5569566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 55705fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %d", (int)info); 5589566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 5594396437dSToby Isaac } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "QR factored matrix cannot be used for transpose solve"); 5609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank)))); 5613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5624396437dSToby Isaac } 5634396437dSToby Isaac 564d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 565d71ae5a4SJacob Faibussowitsch { 5664396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 5674905a7bcSToby Isaac PetscScalar *y; 5684905a7bcSToby Isaac PetscBLASInt m = 0, k = 0; 5694905a7bcSToby Isaac 5704905a7bcSToby Isaac PetscFunctionBegin; 5719566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 5729566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 5734905a7bcSToby Isaac if (k < m) { 5749566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, mat->qrrhs)); 5759566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->qrrhs, &y)); 5764905a7bcSToby Isaac } else { 5779566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, yy)); 5789566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 5794905a7bcSToby Isaac } 5804396437dSToby Isaac *_y = y; 5814396437dSToby Isaac *_k = k; 5824396437dSToby Isaac *_m = m; 5833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5844396437dSToby Isaac } 5854396437dSToby Isaac 586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 587d71ae5a4SJacob Faibussowitsch { 5884396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 58942e9364cSSatish Balay PetscScalar *y = NULL; 5904396437dSToby Isaac PetscBLASInt m, k; 5914396437dSToby Isaac 5924396437dSToby Isaac PetscFunctionBegin; 5934396437dSToby Isaac y = *_y; 5944396437dSToby Isaac *_y = NULL; 5954396437dSToby Isaac k = *_k; 5964396437dSToby Isaac m = *_m; 5974905a7bcSToby Isaac if (k < m) { 5984905a7bcSToby Isaac PetscScalar *yv; 5999566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &yv)); 6009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(yv, y, k)); 6019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &yv)); 6029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->qrrhs, &y)); 6034905a7bcSToby Isaac } else { 6049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 6054905a7bcSToby Isaac } 6063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6074905a7bcSToby Isaac } 6084905a7bcSToby Isaac 609d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy) 610d71ae5a4SJacob Faibussowitsch { 61142e9364cSSatish Balay PetscScalar *y = NULL; 61242e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6134396437dSToby Isaac 6144396437dSToby Isaac PetscFunctionBegin; 6159566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6169566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE)); 6179566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6194396437dSToby Isaac } 6204396437dSToby Isaac 621d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy) 622d71ae5a4SJacob Faibussowitsch { 62342e9364cSSatish Balay PetscScalar *y = NULL; 62442e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6254396437dSToby Isaac 6264396437dSToby Isaac PetscFunctionBegin; 6279566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6289566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE)); 6299566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6314396437dSToby Isaac } 6324396437dSToby Isaac 633d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 634d71ae5a4SJacob Faibussowitsch { 635e54beecaSStefano Zampini PetscScalar *y = NULL; 636e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6374396437dSToby Isaac 6384396437dSToby Isaac PetscFunctionBegin; 6399566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6409566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE)); 6419566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6434396437dSToby Isaac } 6444396437dSToby Isaac 645d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 646d71ae5a4SJacob Faibussowitsch { 647e54beecaSStefano Zampini PetscScalar *y = NULL; 648e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6494396437dSToby Isaac 6504396437dSToby Isaac PetscFunctionBegin; 6519566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6529566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE)); 6539566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6554396437dSToby Isaac } 6564396437dSToby Isaac 657d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy) 658d71ae5a4SJacob Faibussowitsch { 659e54beecaSStefano Zampini PetscScalar *y = NULL; 660e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6614396437dSToby Isaac 6624396437dSToby Isaac PetscFunctionBegin; 6639566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6649566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k)); 6659566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6674396437dSToby Isaac } 6684396437dSToby Isaac 669d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy) 670d71ae5a4SJacob Faibussowitsch { 67142e9364cSSatish Balay PetscScalar *y = NULL; 67242e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6734396437dSToby Isaac 6744396437dSToby Isaac PetscFunctionBegin; 6759566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6769566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k)); 6779566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6794396437dSToby Isaac } 6804396437dSToby Isaac 681d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 682d71ae5a4SJacob Faibussowitsch { 6834905a7bcSToby Isaac const PetscScalar *b; 6844396437dSToby Isaac PetscScalar *y; 685bf5a80bcSToby Isaac PetscInt n, _ldb, _ldx; 686bf5a80bcSToby Isaac PetscBLASInt nrhs = 0, m = 0, k = 0, ldb = 0, ldx = 0, ldy = 0; 6874905a7bcSToby Isaac 6884905a7bcSToby Isaac PetscFunctionBegin; 6899371c9d4SSatish Balay *_ldy = 0; 6909371c9d4SSatish Balay *_m = 0; 6919371c9d4SSatish Balay *_nrhs = 0; 6929371c9d4SSatish Balay *_k = 0; 6939371c9d4SSatish Balay *_y = NULL; 6949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 6959566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 6969566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, NULL, &n)); 6979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(n, &nrhs)); 6989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &_ldb)); 6999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldb, &ldb)); 7009566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X, &_ldx)); 7019566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 702bf5a80bcSToby Isaac if (ldx < m) { 7039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 7049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrhs * m, &y)); 705bf5a80bcSToby Isaac if (ldb == m) { 7069566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(y, b, ldb * nrhs)); 7074905a7bcSToby Isaac } else { 70848a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * m], &b[j * ldb], m)); 7094905a7bcSToby Isaac } 710bf5a80bcSToby Isaac ldy = m; 7119566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 7124905a7bcSToby Isaac } else { 713bf5a80bcSToby Isaac if (ldb == ldx) { 7149566063dSJacob Faibussowitsch PetscCall(MatCopy(B, X, SAME_NONZERO_PATTERN)); 7159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &y)); 7164905a7bcSToby Isaac } else { 7179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &y)); 7189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 71948a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * ldx], &b[j * ldb], m)); 7209566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 7214905a7bcSToby Isaac } 722bf5a80bcSToby Isaac ldy = ldx; 7234905a7bcSToby Isaac } 7244396437dSToby Isaac *_y = y; 725bf5a80bcSToby Isaac *_ldy = ldy; 7264396437dSToby Isaac *_k = k; 7274396437dSToby Isaac *_m = m; 7284396437dSToby Isaac *_nrhs = nrhs; 7293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7304396437dSToby Isaac } 7314396437dSToby Isaac 732d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 733d71ae5a4SJacob Faibussowitsch { 7344396437dSToby Isaac PetscScalar *y; 735bf5a80bcSToby Isaac PetscInt _ldx; 736bf5a80bcSToby Isaac PetscBLASInt k, ldy, nrhs, ldx = 0; 7374396437dSToby Isaac 7384396437dSToby Isaac PetscFunctionBegin; 7394396437dSToby Isaac y = *_y; 7404396437dSToby Isaac *_y = NULL; 7414396437dSToby Isaac k = *_k; 742bf5a80bcSToby Isaac ldy = *_ldy; 7434396437dSToby Isaac nrhs = *_nrhs; 7449566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X, &_ldx)); 7459566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 746bf5a80bcSToby Isaac if (ldx != ldy) { 7474905a7bcSToby Isaac PetscScalar *xv; 7489566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &xv)); 74948a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&xv[j * ldx], &y[j * ldy], k)); 7509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X, &xv)); 7519566063dSJacob Faibussowitsch PetscCall(PetscFree(y)); 7524905a7bcSToby Isaac } else { 7539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X, &y)); 7544905a7bcSToby Isaac } 7553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75685e2c93fSHong Zhang } 75785e2c93fSHong Zhang 758d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X) 759d71ae5a4SJacob Faibussowitsch { 7604396437dSToby Isaac PetscScalar *y; 761bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7624396437dSToby Isaac 7634396437dSToby Isaac PetscFunctionBegin; 7649566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7659566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7669566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7684396437dSToby Isaac } 7694396437dSToby Isaac 770d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X) 771d71ae5a4SJacob Faibussowitsch { 7724396437dSToby Isaac PetscScalar *y; 773bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7744396437dSToby Isaac 7754396437dSToby Isaac PetscFunctionBegin; 7769566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7779566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 7789566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7804396437dSToby Isaac } 7814396437dSToby Isaac 782d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X) 783d71ae5a4SJacob Faibussowitsch { 7844396437dSToby Isaac PetscScalar *y; 785bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7864396437dSToby Isaac 7874396437dSToby Isaac PetscFunctionBegin; 7889566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7899566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7909566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7924396437dSToby Isaac } 7934396437dSToby Isaac 794d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X) 795d71ae5a4SJacob Faibussowitsch { 7964396437dSToby Isaac PetscScalar *y; 797bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7984396437dSToby Isaac 7994396437dSToby Isaac PetscFunctionBegin; 8009566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8019566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 8029566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8044396437dSToby Isaac } 8054396437dSToby Isaac 806d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X) 807d71ae5a4SJacob Faibussowitsch { 8084396437dSToby Isaac PetscScalar *y; 809bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 8104396437dSToby Isaac 8114396437dSToby Isaac PetscFunctionBegin; 8129566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8139566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 8149566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8164396437dSToby Isaac } 8174396437dSToby Isaac 818d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X) 819d71ae5a4SJacob Faibussowitsch { 8204396437dSToby Isaac PetscScalar *y; 821bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 8224396437dSToby Isaac 8234396437dSToby Isaac PetscFunctionBegin; 8249566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8259566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 8269566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 8273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8284396437dSToby Isaac } 8294396437dSToby Isaac 830db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 831db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactor_SeqDense(Mat A, IS row, IS col, const MatFactorInfo *minfo) 833d71ae5a4SJacob Faibussowitsch { 834db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 835db4efbfdSBarry Smith PetscBLASInt n, m, info; 836db4efbfdSBarry Smith 837db4efbfdSBarry Smith PetscFunctionBegin; 8389566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 8399566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 8404dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 8413ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 8429566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 843792fecdfSBarry Smith PetscCallBLAS("LAPACKgetrf", LAPACKgetrf_(&m, &n, mat->v, &mat->lda, mat->pivots, &info)); 8449566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 8458e57ea43SSatish Balay 84605fcb23eSStefano Zampini PetscCheck(info >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to LU factorization %d", (int)info); 84705fcb23eSStefano Zampini PetscCheck(info <= 0, PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Bad LU factorization %d", (int)info); 8488208b9aeSStefano Zampini 8494396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_LU; 8504396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_LU; 8514396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_LU; 8524396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU; 853d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 854db4efbfdSBarry Smith 8559566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 8569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 857f6224b95SHong Zhang 8589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((2.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3)); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 860db4efbfdSBarry Smith } 861db4efbfdSBarry Smith 862d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 863d71ae5a4SJacob Faibussowitsch { 8644396437dSToby Isaac MatFactorInfo info; 8654396437dSToby Isaac 8664396437dSToby Isaac PetscFunctionBegin; 8679566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 868dbbe0bcdSBarry Smith PetscUseTypeMethod(fact, lufactor, NULL, NULL, &info); 8693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8704396437dSToby Isaac } 8714396437dSToby Isaac 872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, IS col, const MatFactorInfo *info) 873d71ae5a4SJacob Faibussowitsch { 8744396437dSToby Isaac PetscFunctionBegin; 8754396437dSToby Isaac fact->preallocated = PETSC_TRUE; 8764396437dSToby Isaac fact->assembled = PETSC_TRUE; 8774396437dSToby Isaac fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8794396437dSToby Isaac } 8804396437dSToby Isaac 881a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */ 882d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactor_SeqDense(Mat A, IS perm, const MatFactorInfo *factinfo) 883d71ae5a4SJacob Faibussowitsch { 884db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 885c5df96a5SBarry Smith PetscBLASInt info, n; 886db4efbfdSBarry Smith 887db4efbfdSBarry Smith PetscFunctionBegin; 8889566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 8893ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 890b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 8919566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 892792fecdfSBarry Smith PetscCallBLAS("LAPACKpotrf", LAPACKpotrf_("L", &n, mat->v, &mat->lda, &info)); 8939566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 894a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 895b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 8964dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 897a49dc2a2SStefano Zampini if (!mat->fwork) { 898a49dc2a2SStefano Zampini PetscScalar dummy; 899a49dc2a2SStefano Zampini 900a49dc2a2SStefano Zampini mat->lfwork = -1; 9019566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 902792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info)); 9039566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 904a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 9059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 906a49dc2a2SStefano Zampini } 9079566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 908792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 9099566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 910a49dc2a2SStefano Zampini #endif 911a49dc2a2SStefano Zampini } else { /* symmetric case */ 9124dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 913a49dc2a2SStefano Zampini if (!mat->fwork) { 914a49dc2a2SStefano Zampini PetscScalar dummy; 915a49dc2a2SStefano Zampini 916a49dc2a2SStefano Zampini mat->lfwork = -1; 9179566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 918792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info)); 9199566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 920a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 9219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 922a49dc2a2SStefano Zampini } 9239566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 924792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 9259566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 926a49dc2a2SStefano Zampini } 92728b400f6SJacob Faibussowitsch PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad factorization: zero pivot in row %" PetscInt_FMT, (PetscInt)info - 1); 9288208b9aeSStefano Zampini 9294396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_Cholesky; 9304396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_Cholesky; 9314396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_Cholesky; 9324396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky; 933d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 9342205254eSKarl Rupp 9359566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 9369566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 937f6224b95SHong Zhang 9389566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 9393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 940db4efbfdSBarry Smith } 941db4efbfdSBarry Smith 942d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 943d71ae5a4SJacob Faibussowitsch { 944db4efbfdSBarry Smith MatFactorInfo info; 945db4efbfdSBarry Smith 946db4efbfdSBarry Smith PetscFunctionBegin; 947db4efbfdSBarry Smith info.fill = 1.0; 9482205254eSKarl Rupp 9499566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 950dbbe0bcdSBarry Smith PetscUseTypeMethod(fact, choleskyfactor, NULL, &info); 9513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 952db4efbfdSBarry Smith } 953db4efbfdSBarry Smith 954d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info) 955d71ae5a4SJacob Faibussowitsch { 956db4efbfdSBarry Smith PetscFunctionBegin; 957c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 9581bbcc794SSatish Balay fact->preallocated = PETSC_TRUE; 959719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 9603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 961db4efbfdSBarry Smith } 962db4efbfdSBarry Smith 963d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactor_SeqDense(Mat A, IS col, const MatFactorInfo *minfo) 964d71ae5a4SJacob Faibussowitsch { 9654905a7bcSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 9664905a7bcSToby Isaac PetscBLASInt n, m, info, min, max; 9674905a7bcSToby Isaac 9684905a7bcSToby Isaac PetscFunctionBegin; 9699566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 9709566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 9714396437dSToby Isaac max = PetscMax(m, n); 9724396437dSToby Isaac min = PetscMin(m, n); 9734dfa11a4SJacob Faibussowitsch if (!mat->tau) { PetscCall(PetscMalloc1(min, &mat->tau)); } 9744dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(n, &mat->pivots)); } 97548a46eb9SPierre Jolivet if (!mat->qrrhs) PetscCall(MatCreateVecs(A, NULL, &(mat->qrrhs))); 9763ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 9774905a7bcSToby Isaac if (!mat->fwork) { 9784905a7bcSToby Isaac PetscScalar dummy; 9794905a7bcSToby Isaac 9804905a7bcSToby Isaac mat->lfwork = -1; 9819566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 982792fecdfSBarry Smith PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, &dummy, &mat->lfwork, &info)); 9839566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 9844905a7bcSToby Isaac mat->lfwork = (PetscInt)PetscRealPart(dummy); 9859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 9864905a7bcSToby Isaac } 9879566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 988792fecdfSBarry Smith PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, mat->fwork, &mat->lfwork, &info)); 9899566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 99005fcb23eSStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to QR factorization %d", (int)info); 9914905a7bcSToby Isaac // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR. For now just say rank is min of m and n 9924905a7bcSToby Isaac mat->rank = min; 9934905a7bcSToby Isaac 9944396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_QR; 9954396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_QR; 9964905a7bcSToby Isaac A->factortype = MAT_FACTOR_QR; 9974905a7bcSToby Isaac if (m == n) { 9984396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_QR; 9994396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR; 10004905a7bcSToby Isaac } 10014905a7bcSToby Isaac 10029566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 10039566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 10044905a7bcSToby Isaac 10059566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * min * min * (max - min / 3.0))); 10063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10074905a7bcSToby Isaac } 10084905a7bcSToby Isaac 1009d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 1010d71ae5a4SJacob Faibussowitsch { 10114905a7bcSToby Isaac MatFactorInfo info; 10124905a7bcSToby Isaac 10134905a7bcSToby Isaac PetscFunctionBegin; 10144905a7bcSToby Isaac info.fill = 1.0; 10154905a7bcSToby Isaac 10169566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 1017cac4c232SBarry Smith PetscUseMethod(fact, "MatQRFactor_C", (Mat, IS, const MatFactorInfo *), (fact, NULL, &info)); 10183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10194905a7bcSToby Isaac } 10204905a7bcSToby Isaac 1021d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info) 1022d71ae5a4SJacob Faibussowitsch { 10234905a7bcSToby Isaac PetscFunctionBegin; 10244905a7bcSToby Isaac fact->assembled = PETSC_TRUE; 10254905a7bcSToby Isaac fact->preallocated = PETSC_TRUE; 10269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)fact, "MatQRFactorNumeric_C", MatQRFactorNumeric_SeqDense)); 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10284905a7bcSToby Isaac } 10294905a7bcSToby Isaac 1030ca15aa20SStefano Zampini /* uses LAPACK */ 1031d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A, MatFactorType ftype, Mat *fact) 1032d71ae5a4SJacob Faibussowitsch { 1033db4efbfdSBarry Smith PetscFunctionBegin; 10349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), fact)); 10359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*fact, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 10369566063dSJacob Faibussowitsch PetscCall(MatSetType(*fact, MATDENSE)); 103766e17bc3SBarry Smith (*fact)->trivialsymbolic = PETSC_TRUE; 10382a350339SBarry Smith if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) { 1039db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 10402a350339SBarry Smith (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense; 1041bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 1042db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 1043bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_QR) { 10449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)(*fact), "MatQRFactorSymbolic_C", MatQRFactorSymbolic_SeqDense)); 1045db4efbfdSBarry Smith } 1046d5f3da31SBarry Smith (*fact)->factortype = ftype; 104700c67f3bSHong Zhang 10489566063dSJacob Faibussowitsch PetscCall(PetscFree((*fact)->solvertype)); 10499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &(*fact)->solvertype)); 10509566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_LU])); 10519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ILU])); 10529566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY])); 10539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ICC])); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1055db4efbfdSBarry Smith } 1056db4efbfdSBarry Smith 1057d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSOR_SeqDense(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec xx) 1058d71ae5a4SJacob Faibussowitsch { 1059c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1060d9ca1df4SBarry Smith PetscScalar *x, *v = mat->v, zero = 0.0, xt; 1061d9ca1df4SBarry Smith const PetscScalar *b; 1062d0f46423SBarry Smith PetscInt m = A->rmap->n, i; 106323fff9afSBarry Smith PetscBLASInt o = 1, bm = 0; 1064289bc588SBarry Smith 10653a40ed3dSBarry Smith PetscFunctionBegin; 106647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 106708401ef6SPierre Jolivet PetscCheck(A->offloadmask != PETSC_OFFLOAD_GPU, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not implemented"); 1068ca15aa20SStefano Zampini #endif 1069422a814eSBarry Smith if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */ 10709566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(m, &bm)); 1071289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 10723bffc371SBarry Smith /* this is a hack fix, should have another version without the second BLASdotu */ 10739566063dSJacob Faibussowitsch PetscCall(VecSet(xx, zero)); 1074289bc588SBarry Smith } 10759566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 10769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 1077b965ef7fSBarry Smith its = its * lits; 107808401ef6SPierre Jolivet PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 1079289bc588SBarry Smith while (its--) { 1080fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 1081289bc588SBarry Smith for (i = 0; i < m; i++) { 1082792fecdfSBarry Smith PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o)); 108355a1b374SBarry Smith x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift); 1084289bc588SBarry Smith } 1085289bc588SBarry Smith } 1086fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1087289bc588SBarry Smith for (i = m - 1; i >= 0; i--) { 1088792fecdfSBarry Smith PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o)); 108955a1b374SBarry Smith x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift); 1090289bc588SBarry Smith } 1091289bc588SBarry Smith } 1092289bc588SBarry Smith } 10939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 10949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 10953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1096289bc588SBarry Smith } 1097289bc588SBarry Smith 1098d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqDense(Mat A, Vec xx, Vec yy) 1099d71ae5a4SJacob Faibussowitsch { 1100c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1101d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 1102d9ca1df4SBarry Smith PetscScalar *y; 11030805154bSBarry Smith PetscBLASInt m, n, _One = 1; 1104ea709b57SSatish Balay PetscScalar _DOne = 1.0, _DZero = 0.0; 11053a40ed3dSBarry Smith 11063a40ed3dSBarry Smith PetscFunctionBegin; 11079566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 11089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 11099566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11109566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(yy, &y)); 11115ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11125ac36cfcSBarry Smith PetscBLASInt i; 11135ac36cfcSBarry Smith for (i = 0; i < n; i++) y[i] = 0.0; 11145ac36cfcSBarry Smith } else { 1115792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v, &mat->lda, x, &_One, &_DZero, y, &_One)); 11169566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->rmap->n * A->cmap->n - A->cmap->n)); 11175ac36cfcSBarry Smith } 11189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(yy, &y)); 11203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1121289bc588SBarry Smith } 1122800995b7SMatthew Knepley 1123d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqDense(Mat A, Vec xx, Vec yy) 1124d71ae5a4SJacob Faibussowitsch { 1125c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1126d9ca1df4SBarry Smith PetscScalar *y, _DOne = 1.0, _DZero = 0.0; 11270805154bSBarry Smith PetscBLASInt m, n, _One = 1; 1128d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 11293a40ed3dSBarry Smith 11303a40ed3dSBarry Smith PetscFunctionBegin; 11319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 11329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 11339566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(yy, &y)); 11355ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11365ac36cfcSBarry Smith PetscBLASInt i; 11375ac36cfcSBarry Smith for (i = 0; i < m; i++) y[i] = 0.0; 11385ac36cfcSBarry Smith } else { 1139792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v, &(mat->lda), x, &_One, &_DZero, y, &_One)); 11409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->rmap->n * A->cmap->n - A->rmap->n)); 11415ac36cfcSBarry Smith } 11429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(yy, &y)); 11443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1145289bc588SBarry Smith } 11466ee01492SSatish Balay 1147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy) 1148d71ae5a4SJacob Faibussowitsch { 1149c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1150d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 1151d9ca1df4SBarry Smith PetscScalar *y, _DOne = 1.0; 11520805154bSBarry Smith PetscBLASInt m, n, _One = 1; 11533a40ed3dSBarry Smith 11543a40ed3dSBarry Smith PetscFunctionBegin; 11559566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 11569566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 11579566063dSJacob Faibussowitsch PetscCall(VecCopy(zz, yy)); 11583ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 11599566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11609566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 1161792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v, &(mat->lda), x, &_One, &_DOne, y, &_One)); 11629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 11649566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->rmap->n * A->cmap->n)); 11653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1166289bc588SBarry Smith } 11676ee01492SSatish Balay 1168d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy) 1169d71ae5a4SJacob Faibussowitsch { 1170c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1171d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 1172d9ca1df4SBarry Smith PetscScalar *y; 11730805154bSBarry Smith PetscBLASInt m, n, _One = 1; 117487828ca2SBarry Smith PetscScalar _DOne = 1.0; 11753a40ed3dSBarry Smith 11763a40ed3dSBarry Smith PetscFunctionBegin; 11779566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 11789566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 11799566063dSJacob Faibussowitsch PetscCall(VecCopy(zz, yy)); 11803ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 11819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11829566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 1183792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v, &(mat->lda), x, &_One, &_DOne, y, &_One)); 11849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 11869566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->rmap->n * A->cmap->n)); 11873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1188289bc588SBarry Smith } 1189289bc588SBarry Smith 1190d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals) 1191d71ae5a4SJacob Faibussowitsch { 1192c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 119313f74950SBarry Smith PetscInt i; 119467e560aaSBarry Smith 11953a40ed3dSBarry Smith PetscFunctionBegin; 1196d0f46423SBarry Smith *ncols = A->cmap->n; 1197289bc588SBarry Smith if (cols) { 11989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n, cols)); 1199d0f46423SBarry Smith for (i = 0; i < A->cmap->n; i++) (*cols)[i] = i; 1200289bc588SBarry Smith } 1201289bc588SBarry Smith if (vals) { 1202ca15aa20SStefano Zampini const PetscScalar *v; 1203ca15aa20SStefano Zampini 12049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 12059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n, vals)); 1206ca15aa20SStefano Zampini v += row; 12079371c9d4SSatish Balay for (i = 0; i < A->cmap->n; i++) { 12089371c9d4SSatish Balay (*vals)[i] = *v; 12099371c9d4SSatish Balay v += mat->lda; 12109371c9d4SSatish Balay } 12119566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 1212289bc588SBarry Smith } 12133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1214289bc588SBarry Smith } 12156ee01492SSatish Balay 1216d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals) 1217d71ae5a4SJacob Faibussowitsch { 1218606d414cSSatish Balay PetscFunctionBegin; 1219cb4a9cd9SHong Zhang if (ncols) *ncols = 0; 12209566063dSJacob Faibussowitsch if (cols) PetscCall(PetscFree(*cols)); 12219566063dSJacob Faibussowitsch if (vals) PetscCall(PetscFree(*vals)); 12223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1223289bc588SBarry Smith } 1224*2ef1f0ffSBarry Smith 1225d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], const PetscScalar v[], InsertMode addv) 1226d71ae5a4SJacob Faibussowitsch { 1227c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1228ca15aa20SStefano Zampini PetscScalar *av; 122913f74950SBarry Smith PetscInt i, j, idx = 0; 123047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1231c70f7ee4SJunchao Zhang PetscOffloadMask oldf; 1232ca15aa20SStefano Zampini #endif 1233d6dfbf8fSBarry Smith 12343a40ed3dSBarry Smith PetscFunctionBegin; 12359566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &av)); 1236289bc588SBarry Smith if (!mat->roworiented) { 1237dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1238289bc588SBarry Smith for (j = 0; j < n; j++) { 12399371c9d4SSatish Balay if (indexn[j] < 0) { 12409371c9d4SSatish Balay idx += m; 12419371c9d4SSatish Balay continue; 12429371c9d4SSatish Balay } 12436bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1244289bc588SBarry Smith for (i = 0; i < m; i++) { 12459371c9d4SSatish Balay if (indexm[i] < 0) { 12469371c9d4SSatish Balay idx++; 12479371c9d4SSatish Balay continue; 12489371c9d4SSatish Balay } 12496bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1250ca15aa20SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] = v[idx++]; 1251289bc588SBarry Smith } 1252289bc588SBarry Smith } 12533a40ed3dSBarry Smith } else { 1254289bc588SBarry Smith for (j = 0; j < n; j++) { 12559371c9d4SSatish Balay if (indexn[j] < 0) { 12569371c9d4SSatish Balay idx += m; 12579371c9d4SSatish Balay continue; 12589371c9d4SSatish Balay } 12596bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1260289bc588SBarry Smith for (i = 0; i < m; i++) { 12619371c9d4SSatish Balay if (indexm[i] < 0) { 12629371c9d4SSatish Balay idx++; 12639371c9d4SSatish Balay continue; 12649371c9d4SSatish Balay } 12656bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1266ca15aa20SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] += v[idx++]; 1267289bc588SBarry Smith } 1268289bc588SBarry Smith } 1269289bc588SBarry Smith } 12703a40ed3dSBarry Smith } else { 1271dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1272e8d4e0b9SBarry Smith for (i = 0; i < m; i++) { 12739371c9d4SSatish Balay if (indexm[i] < 0) { 12749371c9d4SSatish Balay idx += n; 12759371c9d4SSatish Balay continue; 12769371c9d4SSatish Balay } 12776bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1278e8d4e0b9SBarry Smith for (j = 0; j < n; j++) { 12799371c9d4SSatish Balay if (indexn[j] < 0) { 12809371c9d4SSatish Balay idx++; 12819371c9d4SSatish Balay continue; 12829371c9d4SSatish Balay } 12836bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1284ca15aa20SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] = v[idx++]; 1285e8d4e0b9SBarry Smith } 1286e8d4e0b9SBarry Smith } 12873a40ed3dSBarry Smith } else { 1288289bc588SBarry Smith for (i = 0; i < m; i++) { 12899371c9d4SSatish Balay if (indexm[i] < 0) { 12909371c9d4SSatish Balay idx += n; 12919371c9d4SSatish Balay continue; 12929371c9d4SSatish Balay } 12936bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1294289bc588SBarry Smith for (j = 0; j < n; j++) { 12959371c9d4SSatish Balay if (indexn[j] < 0) { 12969371c9d4SSatish Balay idx++; 12979371c9d4SSatish Balay continue; 12989371c9d4SSatish Balay } 12996bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1300ca15aa20SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] += v[idx++]; 1301289bc588SBarry Smith } 1302289bc588SBarry Smith } 1303289bc588SBarry Smith } 1304e8d4e0b9SBarry Smith } 1305ca15aa20SStefano Zampini /* hack to prevent unneeded copy to the GPU while returning the array */ 130647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1307c70f7ee4SJunchao Zhang oldf = A->offloadmask; 1308c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_GPU; 1309ca15aa20SStefano Zampini #endif 13109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &av)); 131147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1312c70f7ee4SJunchao Zhang A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU); 1313ca15aa20SStefano Zampini #endif 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315289bc588SBarry Smith } 1316e8d4e0b9SBarry Smith 1317d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], PetscScalar v[]) 1318d71ae5a4SJacob Faibussowitsch { 1319ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1320ca15aa20SStefano Zampini const PetscScalar *vv; 132113f74950SBarry Smith PetscInt i, j; 1322ae80bb75SLois Curfman McInnes 13233a40ed3dSBarry Smith PetscFunctionBegin; 13249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &vv)); 1325ae80bb75SLois Curfman McInnes /* row-oriented output */ 1326ae80bb75SLois Curfman McInnes for (i = 0; i < m; i++) { 13279371c9d4SSatish Balay if (indexm[i] < 0) { 13289371c9d4SSatish Balay v += n; 13299371c9d4SSatish Balay continue; 13309371c9d4SSatish Balay } 133108401ef6SPierre Jolivet PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested larger than number rows %" PetscInt_FMT, indexm[i], A->rmap->n); 1332ae80bb75SLois Curfman McInnes for (j = 0; j < n; j++) { 13339371c9d4SSatish Balay if (indexn[j] < 0) { 13349371c9d4SSatish Balay v++; 13359371c9d4SSatish Balay continue; 13369371c9d4SSatish Balay } 133708401ef6SPierre Jolivet PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column %" PetscInt_FMT " requested larger than number columns %" PetscInt_FMT, indexn[j], A->cmap->n); 1338ca15aa20SStefano Zampini *v++ = vv[indexn[j] * mat->lda + indexm[i]]; 1339ae80bb75SLois Curfman McInnes } 1340ae80bb75SLois Curfman McInnes } 13419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &vv)); 13423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1343ae80bb75SLois Curfman McInnes } 1344ae80bb75SLois Curfman McInnes 1345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_Dense_Binary(Mat mat, PetscViewer viewer) 1346d71ae5a4SJacob Faibussowitsch { 13478491ab44SLisandro Dalcin PetscBool skipHeader; 13488491ab44SLisandro Dalcin PetscViewerFormat format; 13498491ab44SLisandro Dalcin PetscInt header[4], M, N, m, lda, i, j, k; 13508491ab44SLisandro Dalcin const PetscScalar *v; 13518491ab44SLisandro Dalcin PetscScalar *vwork; 1352aabbc4fbSShri Abhyankar 1353aabbc4fbSShri Abhyankar PetscFunctionBegin; 13549566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 13559566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader)); 13569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 13578491ab44SLisandro Dalcin if (skipHeader) format = PETSC_VIEWER_NATIVE; 1358aabbc4fbSShri Abhyankar 13599566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 13608491ab44SLisandro Dalcin 13618491ab44SLisandro Dalcin /* write matrix header */ 13629371c9d4SSatish Balay header[0] = MAT_FILE_CLASSID; 13639371c9d4SSatish Balay header[1] = M; 13649371c9d4SSatish Balay header[2] = N; 13658491ab44SLisandro Dalcin header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M * N; 13669566063dSJacob Faibussowitsch if (!skipHeader) PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 13678491ab44SLisandro Dalcin 13689566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 13698491ab44SLisandro Dalcin if (format != PETSC_VIEWER_NATIVE) { 13708491ab44SLisandro Dalcin PetscInt nnz = m * N, *iwork; 13718491ab44SLisandro Dalcin /* store row lengths for each row */ 13729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz, &iwork)); 13738491ab44SLisandro Dalcin for (i = 0; i < m; i++) iwork[i] = N; 13749566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 13758491ab44SLisandro Dalcin /* store column indices (zero start index) */ 13768491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 13779371c9d4SSatish Balay for (j = 0; j < N; j++, k++) iwork[k] = j; 13789566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 13799566063dSJacob Faibussowitsch PetscCall(PetscFree(iwork)); 13808491ab44SLisandro Dalcin } 13818491ab44SLisandro Dalcin /* store matrix values as a dense matrix in row major order */ 13829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m * N, &vwork)); 13839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat, &v)); 13849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat, &lda)); 13858491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 13869371c9d4SSatish Balay for (j = 0; j < N; j++, k++) vwork[k] = v[i + lda * j]; 13879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat, &v)); 13889566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, vwork, m * N, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 13899566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13918491ab44SLisandro Dalcin } 13928491ab44SLisandro Dalcin 1393d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_Dense_Binary(Mat mat, PetscViewer viewer) 1394d71ae5a4SJacob Faibussowitsch { 13958491ab44SLisandro Dalcin PetscBool skipHeader; 13968491ab44SLisandro Dalcin PetscInt header[4], M, N, m, nz, lda, i, j, k; 13978491ab44SLisandro Dalcin PetscInt rows, cols; 13988491ab44SLisandro Dalcin PetscScalar *v, *vwork; 13998491ab44SLisandro Dalcin 14008491ab44SLisandro Dalcin PetscFunctionBegin; 14019566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 14029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader)); 14038491ab44SLisandro Dalcin 14048491ab44SLisandro Dalcin if (!skipHeader) { 14059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 140608401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 14079371c9d4SSatish Balay M = header[1]; 14089371c9d4SSatish Balay N = header[2]; 140908401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 141008401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 14118491ab44SLisandro Dalcin nz = header[3]; 1412aed4548fSBarry Smith PetscCheck(nz == MATRIX_BINARY_FORMAT_DENSE || nz >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Unknown matrix format %" PetscInt_FMT " in file", nz); 1413aabbc4fbSShri Abhyankar } else { 14149566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 1415aed4548fSBarry Smith PetscCheck(M >= 0 && N >= 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix"); 14168491ab44SLisandro Dalcin nz = MATRIX_BINARY_FORMAT_DENSE; 1417e6324fbbSBarry Smith } 1418aabbc4fbSShri Abhyankar 14198491ab44SLisandro Dalcin /* setup global sizes if not set */ 14208491ab44SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 14218491ab44SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 14229566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat)); 14238491ab44SLisandro Dalcin /* check if global sizes are correct */ 14249566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 1425aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 1426aabbc4fbSShri Abhyankar 14279566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 14289566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 14299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mat, &v)); 14309566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat, &lda)); 14318491ab44SLisandro Dalcin if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense format */ 14328491ab44SLisandro Dalcin PetscInt nnz = m * N; 14338491ab44SLisandro Dalcin /* read in matrix values */ 14349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz, &vwork)); 14359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 14368491ab44SLisandro Dalcin /* store values in column major order */ 14378491ab44SLisandro Dalcin for (j = 0; j < N; j++) 14389371c9d4SSatish Balay for (i = 0; i < m; i++) v[i + lda * j] = vwork[i * N + j]; 14399566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 14408491ab44SLisandro Dalcin } else { /* matrix in file is sparse format */ 14418491ab44SLisandro Dalcin PetscInt nnz = 0, *rlens, *icols; 14428491ab44SLisandro Dalcin /* read in row lengths */ 14439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rlens)); 14449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rlens, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 14458491ab44SLisandro Dalcin for (i = 0; i < m; i++) nnz += rlens[i]; 14468491ab44SLisandro Dalcin /* read in column indices and values */ 14479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nnz, &icols, nnz, &vwork)); 14489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, icols, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 14499566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 14508491ab44SLisandro Dalcin /* store values in column major order */ 14518491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 14529371c9d4SSatish Balay for (j = 0; j < rlens[i]; j++, k++) v[i + lda * icols[k]] = vwork[k]; 14539566063dSJacob Faibussowitsch PetscCall(PetscFree(rlens)); 14549566063dSJacob Faibussowitsch PetscCall(PetscFree2(icols, vwork)); 1455aabbc4fbSShri Abhyankar } 14569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mat, &v)); 14579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 14589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 14593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1460aabbc4fbSShri Abhyankar } 1461aabbc4fbSShri Abhyankar 1462d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer) 1463d71ae5a4SJacob Faibussowitsch { 1464eb91f321SVaclav Hapla PetscBool isbinary, ishdf5; 1465eb91f321SVaclav Hapla 1466eb91f321SVaclav Hapla PetscFunctionBegin; 1467eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1468eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1469eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 14709566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 14719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 14729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 1473eb91f321SVaclav Hapla if (isbinary) { 14749566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1475eb91f321SVaclav Hapla } else if (ishdf5) { 1476eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 14779566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1478eb91f321SVaclav Hapla #else 1479eb91f321SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1480eb91f321SVaclav Hapla #endif 1481eb91f321SVaclav Hapla } else { 148298921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 1483eb91f321SVaclav Hapla } 14843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1485eb91f321SVaclav Hapla } 1486eb91f321SVaclav Hapla 1487d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_ASCII(Mat A, PetscViewer viewer) 1488d71ae5a4SJacob Faibussowitsch { 1489932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense *)A->data; 149013f74950SBarry Smith PetscInt i, j; 14912dcb1b2aSMatthew Knepley const char *name; 1492ca15aa20SStefano Zampini PetscScalar *v, *av; 1493f3ef73ceSBarry Smith PetscViewerFormat format; 14945f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 1495ace3abfcSBarry Smith PetscBool allreal = PETSC_TRUE; 14965f481a85SSatish Balay #endif 1497932b0c3eSLois Curfman McInnes 14983a40ed3dSBarry Smith PetscFunctionBegin; 14999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&av)); 15009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1501456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 15023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); /* do nothing for now */ 1503fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 15049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1505d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 1506ca15aa20SStefano Zampini v = av + i; 15079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1508d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1509aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1510329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 15119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", j, (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v))); 1512329f5518SBarry Smith } else if (PetscRealPart(*v)) { 15139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)PetscRealPart(*v))); 15146831982aSBarry Smith } 151580cd9d93SLois Curfman McInnes #else 151648a46eb9SPierre Jolivet if (*v) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)*v)); 151780cd9d93SLois Curfman McInnes #endif 15181b807ce4Svictorle v += a->lda; 151980cd9d93SLois Curfman McInnes } 15209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 152180cd9d93SLois Curfman McInnes } 15229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 15233a40ed3dSBarry Smith } else { 15249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1525aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 152647989497SBarry Smith /* determine if matrix has all real values */ 1527bcd8d3a4SJose E. Roman for (j = 0; j < A->cmap->n; j++) { 1528bcd8d3a4SJose E. Roman v = av + j * a->lda; 1529bcd8d3a4SJose E. Roman for (i = 0; i < A->rmap->n; i++) { 15309371c9d4SSatish Balay if (PetscImaginaryPart(v[i])) { 15319371c9d4SSatish Balay allreal = PETSC_FALSE; 15329371c9d4SSatish Balay break; 15339371c9d4SSatish Balay } 153447989497SBarry Smith } 1535bcd8d3a4SJose E. Roman } 153647989497SBarry Smith #endif 1537fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 15389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name)); 15399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", A->rmap->n, A->cmap->n)); 15409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s = zeros(%" PetscInt_FMT ",%" PetscInt_FMT ");\n", name, A->rmap->n, A->cmap->n)); 15419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s = [\n", name)); 1542ffac6cdbSBarry Smith } 1543ffac6cdbSBarry Smith 1544d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 1545ca15aa20SStefano Zampini v = av + i; 1546d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1547aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 154847989497SBarry Smith if (allreal) { 15499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)PetscRealPart(*v))); 155047989497SBarry Smith } else { 15519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e + %18.16ei ", (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v))); 155247989497SBarry Smith } 1553289bc588SBarry Smith #else 15549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)*v)); 1555289bc588SBarry Smith #endif 15561b807ce4Svictorle v += a->lda; 1557289bc588SBarry Smith } 15589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1559289bc588SBarry Smith } 156048a46eb9SPierre Jolivet if (format == PETSC_VIEWER_ASCII_MATLAB) PetscCall(PetscViewerASCIIPrintf(viewer, "];\n")); 15619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1562da3a660dSBarry Smith } 15639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&av)); 15649566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 15653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1566289bc588SBarry Smith } 1567289bc588SBarry Smith 15689804daf3SBarry Smith #include <petscdraw.h> 1569d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw, void *Aa) 1570d71ae5a4SJacob Faibussowitsch { 1571f1af5d2fSBarry Smith Mat A = (Mat)Aa; 1572383922c3SLisandro Dalcin PetscInt m = A->rmap->n, n = A->cmap->n, i, j; 1573383922c3SLisandro Dalcin int color = PETSC_DRAW_WHITE; 1574ca15aa20SStefano Zampini const PetscScalar *v; 1575b0a32e0cSBarry Smith PetscViewer viewer; 1576b05fc000SLisandro Dalcin PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 1577f3ef73ceSBarry Smith PetscViewerFormat format; 1578f1af5d2fSBarry Smith 1579f1af5d2fSBarry Smith PetscFunctionBegin; 15809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 15819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 15829566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 1583f1af5d2fSBarry Smith 1584f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 15859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 1586fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1587d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1588f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 1589f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 15909371c9d4SSatish Balay x_l = j; 15919371c9d4SSatish Balay x_r = x_l + 1.0; 1592f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1593f1af5d2fSBarry Smith y_l = m - i - 1.0; 1594f1af5d2fSBarry Smith y_r = y_l + 1.0; 1595ca15aa20SStefano Zampini if (PetscRealPart(v[j * m + i]) > 0.) color = PETSC_DRAW_RED; 1596ca15aa20SStefano Zampini else if (PetscRealPart(v[j * m + i]) < 0.) color = PETSC_DRAW_BLUE; 1597ca15aa20SStefano Zampini else continue; 15989566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1599f1af5d2fSBarry Smith } 1600f1af5d2fSBarry Smith } 1601d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1602f1af5d2fSBarry Smith } else { 1603f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1604f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1605b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1606b05fc000SLisandro Dalcin PetscDraw popup; 1607b05fc000SLisandro Dalcin 1608f1af5d2fSBarry Smith for (i = 0; i < m * n; i++) { 1609f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1610f1af5d2fSBarry Smith } 1611383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 16129566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 16139566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv)); 1614383922c3SLisandro Dalcin 1615d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1616f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 1617f1af5d2fSBarry Smith x_l = j; 1618f1af5d2fSBarry Smith x_r = x_l + 1.0; 1619f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1620f1af5d2fSBarry Smith y_l = m - i - 1.0; 1621f1af5d2fSBarry Smith y_r = y_l + 1.0; 1622b05fc000SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v[j * m + i]), minv, maxv); 16239566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1624f1af5d2fSBarry Smith } 1625f1af5d2fSBarry Smith } 1626d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1627f1af5d2fSBarry Smith } 16289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 16293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1630f1af5d2fSBarry Smith } 1631f1af5d2fSBarry Smith 1632d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw(Mat A, PetscViewer viewer) 1633d71ae5a4SJacob Faibussowitsch { 1634b0a32e0cSBarry Smith PetscDraw draw; 1635ace3abfcSBarry Smith PetscBool isnull; 1636329f5518SBarry Smith PetscReal xr, yr, xl, yl, h, w; 1637f1af5d2fSBarry Smith 1638f1af5d2fSBarry Smith PetscFunctionBegin; 16399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 16409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 16413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 1642f1af5d2fSBarry Smith 16439371c9d4SSatish Balay xr = A->cmap->n; 16449371c9d4SSatish Balay yr = A->rmap->n; 16459371c9d4SSatish Balay h = yr / 10.0; 16469371c9d4SSatish Balay w = xr / 10.0; 16479371c9d4SSatish Balay xr += w; 16489371c9d4SSatish Balay yr += h; 16499371c9d4SSatish Balay xl = -w; 16509371c9d4SSatish Balay yl = -h; 16519566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 16529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 16539566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqDense_Draw_Zoom, A)); 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 16559566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657f1af5d2fSBarry Smith } 1658f1af5d2fSBarry Smith 1659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqDense(Mat A, PetscViewer viewer) 1660d71ae5a4SJacob Faibussowitsch { 1661ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw; 1662932b0c3eSLois Curfman McInnes 16633a40ed3dSBarry Smith PetscFunctionBegin; 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 16671baa6e33SBarry Smith if (iascii) PetscCall(MatView_SeqDense_ASCII(A, viewer)); 16681baa6e33SBarry Smith else if (isbinary) PetscCall(MatView_Dense_Binary(A, viewer)); 16691baa6e33SBarry Smith else if (isdraw) PetscCall(MatView_SeqDense_Draw(A, viewer)); 16703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1671932b0c3eSLois Curfman McInnes } 1672289bc588SBarry Smith 1673d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A, const PetscScalar *array) 1674d71ae5a4SJacob Faibussowitsch { 1675d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1676d3042a70SBarry Smith 1677d3042a70SBarry Smith PetscFunctionBegin; 167828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 167928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 168028b400f6SJacob Faibussowitsch PetscCheck(!a->unplacedarray, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreArray() first"); 1681d3042a70SBarry Smith a->unplacedarray = a->v; 1682d3042a70SBarry Smith a->unplaced_user_alloc = a->user_alloc; 1683d3042a70SBarry Smith a->v = (PetscScalar *)array; 1684637a0070SStefano Zampini a->user_alloc = PETSC_TRUE; 168547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1686c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1687ca15aa20SStefano Zampini #endif 16883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1689d3042a70SBarry Smith } 1690d3042a70SBarry Smith 1691d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_SeqDense(Mat A) 1692d71ae5a4SJacob Faibussowitsch { 1693d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1694d3042a70SBarry Smith 1695d3042a70SBarry Smith PetscFunctionBegin; 169628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 169728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1698d3042a70SBarry Smith a->v = a->unplacedarray; 1699d3042a70SBarry Smith a->user_alloc = a->unplaced_user_alloc; 1700d3042a70SBarry Smith a->unplacedarray = NULL; 170147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1702c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1703ca15aa20SStefano Zampini #endif 17043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1705d3042a70SBarry Smith } 1706d3042a70SBarry Smith 1707d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A, const PetscScalar *array) 1708d71ae5a4SJacob Faibussowitsch { 1709d5ea218eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1710d5ea218eSStefano Zampini 1711d5ea218eSStefano Zampini PetscFunctionBegin; 171228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 171328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 17149566063dSJacob Faibussowitsch if (!a->user_alloc) PetscCall(PetscFree(a->v)); 1715d5ea218eSStefano Zampini a->v = (PetscScalar *)array; 1716d5ea218eSStefano Zampini a->user_alloc = PETSC_FALSE; 171747d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1718d5ea218eSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 1719d5ea218eSStefano Zampini #endif 17203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1721d5ea218eSStefano Zampini } 1722d5ea218eSStefano Zampini 1723d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqDense(Mat mat) 1724d71ae5a4SJacob Faibussowitsch { 1725ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)mat->data; 172690f02eecSBarry Smith 17273a40ed3dSBarry Smith PetscFunctionBegin; 1728aa482453SBarry Smith #if defined(PETSC_USE_LOG) 17293ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows %" PetscInt_FMT " Cols %" PetscInt_FMT, mat->rmap->n, mat->cmap->n)); 1730a5a9c739SBarry Smith #endif 17319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(l->qrrhs))); 17329566063dSJacob Faibussowitsch PetscCall(PetscFree(l->tau)); 17339566063dSJacob Faibussowitsch PetscCall(PetscFree(l->pivots)); 17349566063dSJacob Faibussowitsch PetscCall(PetscFree(l->fwork)); 17359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&l->ptapwork)); 17369566063dSJacob Faibussowitsch if (!l->user_alloc) PetscCall(PetscFree(l->v)); 17379566063dSJacob Faibussowitsch if (!l->unplaced_user_alloc) PetscCall(PetscFree(l->unplacedarray)); 173828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 173928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 17409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&l->cvec)); 17419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&l->cmat)); 17429566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1743dbd8c25aSHong Zhang 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactor_C", NULL)); 17462e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorSymbolic_C", NULL)); 17472e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorNumeric_C", NULL)); 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 17509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 17519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 17539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 17549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 17569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 17579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 17589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 17599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqaij_C", NULL)); 17608baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_elemental_C", NULL)); 17628baccfbdSHong Zhang #endif 1763d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_scalapack_C", NULL)); 1765d24d4204SJose E. Roman #endif 17662bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensecuda_C", NULL)); 17689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", NULL)); 17699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdense_C", NULL)); 17702e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensecuda_C", NULL)); 17712bf066beSStefano Zampini #endif 177247d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 177347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensehip_C", NULL)); 177447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", NULL)); 177547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdense_C", NULL)); 177647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensehip_C", NULL)); 177747d993e7Ssuyashtn #endif 17789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSeqDenseSetPreallocation_C", NULL)); 17799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqaij_seqdense_C", NULL)); 17809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdense_C", NULL)); 17819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqbaij_seqdense_C", NULL)); 17829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqsbaij_seqdense_C", NULL)); 178352c5f739Sprj- 17849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 17859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 17869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 17879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 17889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 17899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 17909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 17919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 17929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 17939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1795289bc588SBarry Smith } 1796289bc588SBarry Smith 1797d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqDense(Mat A, MatReuse reuse, Mat *matout) 1798d71ae5a4SJacob Faibussowitsch { 1799c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 18006536e3caSStefano Zampini PetscInt k, j, m = A->rmap->n, M = mat->lda, n = A->cmap->n; 180187828ca2SBarry Smith PetscScalar *v, tmp; 180248b35521SBarry Smith 18033a40ed3dSBarry Smith PetscFunctionBegin; 18047fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18056536e3caSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 18066536e3caSStefano Zampini if (m == n) { /* in place transpose */ 18079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1808d3e5ee88SLois Curfman McInnes for (j = 0; j < m; j++) { 1809289bc588SBarry Smith for (k = 0; k < j; k++) { 18101b807ce4Svictorle tmp = v[j + k * M]; 18111b807ce4Svictorle v[j + k * M] = v[k + j * M]; 18121b807ce4Svictorle v[k + j * M] = tmp; 1813289bc588SBarry Smith } 1814289bc588SBarry Smith } 18159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 18166536e3caSStefano Zampini } else { /* reuse memory, temporary allocates new memory */ 18176536e3caSStefano Zampini PetscScalar *v2; 18186536e3caSStefano Zampini PetscLayout tmplayout; 18196536e3caSStefano Zampini 18209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((size_t)m * n, &v2)); 18219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 18226536e3caSStefano Zampini for (j = 0; j < n; j++) { 18236536e3caSStefano Zampini for (k = 0; k < m; k++) v2[j + (size_t)k * n] = v[k + (size_t)j * M]; 18246536e3caSStefano Zampini } 18259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, v2, (size_t)m * n)); 18269566063dSJacob Faibussowitsch PetscCall(PetscFree(v2)); 18279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 18286536e3caSStefano Zampini /* cleanup size dependent quantities */ 18299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mat->cvec)); 18309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat->cmat)); 18319566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->pivots)); 18329566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->fwork)); 18339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat->ptapwork)); 18346536e3caSStefano Zampini /* swap row/col layouts */ 18356536e3caSStefano Zampini mat->lda = n; 18366536e3caSStefano Zampini tmplayout = A->rmap; 18376536e3caSStefano Zampini A->rmap = A->cmap; 18386536e3caSStefano Zampini A->cmap = tmplayout; 18396536e3caSStefano Zampini } 18403a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1841d3e5ee88SLois Curfman McInnes Mat tmat; 1842ec8511deSBarry Smith Mat_SeqDense *tmatd; 184387828ca2SBarry Smith PetscScalar *v2; 1844af36a384SStefano Zampini PetscInt M2; 1845ea709b57SSatish Balay 18466536e3caSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 18479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &tmat)); 18489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(tmat, A->cmap->n, A->rmap->n, A->cmap->n, A->rmap->n)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetType(tmat, ((PetscObject)A)->type_name)); 18509566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(tmat, NULL)); 1851ca15aa20SStefano Zampini } else tmat = *matout; 1852ca15aa20SStefano Zampini 18539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&v)); 18549566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(tmat, &v2)); 1855ec8511deSBarry Smith tmatd = (Mat_SeqDense *)tmat->data; 1856ca15aa20SStefano Zampini M2 = tmatd->lda; 1857d3e5ee88SLois Curfman McInnes for (j = 0; j < n; j++) { 1858af36a384SStefano Zampini for (k = 0; k < m; k++) v2[j + k * M2] = v[k + j * M]; 1859d3e5ee88SLois Curfman McInnes } 18609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(tmat, &v2)); 18619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&v)); 18629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(tmat, MAT_FINAL_ASSEMBLY)); 18639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(tmat, MAT_FINAL_ASSEMBLY)); 18646536e3caSStefano Zampini *matout = tmat; 186548b35521SBarry Smith } 18663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1867289bc588SBarry Smith } 1868289bc588SBarry Smith 1869d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_SeqDense(Mat A1, Mat A2, PetscBool *flg) 1870d71ae5a4SJacob Faibussowitsch { 1871c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense *)A1->data; 1872c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense *)A2->data; 1873ca15aa20SStefano Zampini PetscInt i; 1874ca15aa20SStefano Zampini const PetscScalar *v1, *v2; 18759ea5d5aeSSatish Balay 18763a40ed3dSBarry Smith PetscFunctionBegin; 18779371c9d4SSatish Balay if (A1->rmap->n != A2->rmap->n) { 18789371c9d4SSatish Balay *flg = PETSC_FALSE; 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18809371c9d4SSatish Balay } 18819371c9d4SSatish Balay if (A1->cmap->n != A2->cmap->n) { 18829371c9d4SSatish Balay *flg = PETSC_FALSE; 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18849371c9d4SSatish Balay } 18859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A1, &v1)); 18869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A2, &v2)); 1887ca15aa20SStefano Zampini for (i = 0; i < A1->cmap->n; i++) { 18889566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(v1, v2, A1->rmap->n, flg)); 18893ba16761SJacob Faibussowitsch if (*flg == PETSC_FALSE) PetscFunctionReturn(PETSC_SUCCESS); 1890ca15aa20SStefano Zampini v1 += mat1->lda; 1891ca15aa20SStefano Zampini v2 += mat2->lda; 18921b807ce4Svictorle } 18939566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A1, &v1)); 18949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A2, &v2)); 189577c4ece6SBarry Smith *flg = PETSC_TRUE; 18963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1897289bc588SBarry Smith } 1898289bc588SBarry Smith 1899d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_SeqDense(Mat A, Vec v) 1900d71ae5a4SJacob Faibussowitsch { 1901c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 190213f74950SBarry Smith PetscInt i, n, len; 1903ca15aa20SStefano Zampini PetscScalar *x; 1904ca15aa20SStefano Zampini const PetscScalar *vv; 190544cd7ae7SLois Curfman McInnes 19063a40ed3dSBarry Smith PetscFunctionBegin; 19079566063dSJacob Faibussowitsch PetscCall(VecGetSize(v, &n)); 19089566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 1909d0f46423SBarry Smith len = PetscMin(A->rmap->n, A->cmap->n); 19109566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &vv)); 191108401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 1912ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = vv[i * mat->lda + i]; 19139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &vv)); 19149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 19153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1916289bc588SBarry Smith } 1917289bc588SBarry Smith 1918d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_SeqDense(Mat A, Vec ll, Vec rr) 1919d71ae5a4SJacob Faibussowitsch { 1920c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1921f1ceaac6SMatthew G. Knepley const PetscScalar *l, *r; 1922ca15aa20SStefano Zampini PetscScalar x, *v, *vv; 1923d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n; 192455659b69SBarry Smith 19253a40ed3dSBarry Smith PetscFunctionBegin; 19269566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &vv)); 192728988994SBarry Smith if (ll) { 19289566063dSJacob Faibussowitsch PetscCall(VecGetSize(ll, &m)); 19299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 193008401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vec wrong size"); 1931da3a660dSBarry Smith for (i = 0; i < m; i++) { 1932da3a660dSBarry Smith x = l[i]; 1933ca15aa20SStefano Zampini v = vv + i; 19349371c9d4SSatish Balay for (j = 0; j < n; j++) { 19359371c9d4SSatish Balay (*v) *= x; 19369371c9d4SSatish Balay v += mat->lda; 19379371c9d4SSatish Balay } 1938da3a660dSBarry Smith } 19399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 19409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 1941da3a660dSBarry Smith } 194228988994SBarry Smith if (rr) { 19439566063dSJacob Faibussowitsch PetscCall(VecGetSize(rr, &n)); 19449566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r)); 194508401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec wrong size"); 1946da3a660dSBarry Smith for (i = 0; i < n; i++) { 1947da3a660dSBarry Smith x = r[i]; 1948ca15aa20SStefano Zampini v = vv + i * mat->lda; 19492205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 1950da3a660dSBarry Smith } 19519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r)); 19529566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 1953da3a660dSBarry Smith } 19549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &vv)); 19553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1956289bc588SBarry Smith } 1957289bc588SBarry Smith 1958d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_SeqDense(Mat A, NormType type, PetscReal *nrm) 1959d71ae5a4SJacob Faibussowitsch { 1960c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1961ca15aa20SStefano Zampini PetscScalar *v, *vv; 1962329f5518SBarry Smith PetscReal sum = 0.0; 196375f6d85dSStefano Zampini PetscInt lda, m = A->rmap->n, i, j; 196455659b69SBarry Smith 19653a40ed3dSBarry Smith PetscFunctionBegin; 19669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&vv)); 19679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(A, &lda)); 1968ca15aa20SStefano Zampini v = vv; 1969289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1970a5ce6ee0Svictorle if (lda > m) { 1971d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1972ca15aa20SStefano Zampini v = vv + j * lda; 1973a5ce6ee0Svictorle for (i = 0; i < m; i++) { 19749371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 19759371c9d4SSatish Balay v++; 1976a5ce6ee0Svictorle } 1977a5ce6ee0Svictorle } 1978a5ce6ee0Svictorle } else { 1979570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16) 1980570b7f6dSBarry Smith PetscBLASInt one = 1, cnt = A->cmap->n * A->rmap->n; 1981792fecdfSBarry Smith PetscCallBLAS("BLASnrm2", *nrm = BLASnrm2_(&cnt, v, &one)); 1982570b7f6dSBarry Smith } 1983570b7f6dSBarry Smith #else 1984d0f46423SBarry Smith for (i = 0; i < A->cmap->n * A->rmap->n; i++) { 19859371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 19869371c9d4SSatish Balay v++; 1987289bc588SBarry Smith } 1988a5ce6ee0Svictorle } 19898f1a2a5eSBarry Smith *nrm = PetscSqrtReal(sum); 1990570b7f6dSBarry Smith #endif 19919566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->cmap->n * A->rmap->n)); 19923a40ed3dSBarry Smith } else if (type == NORM_1) { 1993064f8208SBarry Smith *nrm = 0.0; 1994d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1995ca15aa20SStefano Zampini v = vv + j * mat->lda; 1996289bc588SBarry Smith sum = 0.0; 1997d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 19989371c9d4SSatish Balay sum += PetscAbsScalar(*v); 19999371c9d4SSatish Balay v++; 2000289bc588SBarry Smith } 2001064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 2002289bc588SBarry Smith } 20039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n)); 20043a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 2005064f8208SBarry Smith *nrm = 0.0; 2006d0f46423SBarry Smith for (j = 0; j < A->rmap->n; j++) { 2007ca15aa20SStefano Zampini v = vv + j; 2008289bc588SBarry Smith sum = 0.0; 2009d0f46423SBarry Smith for (i = 0; i < A->cmap->n; i++) { 20109371c9d4SSatish Balay sum += PetscAbsScalar(*v); 20119371c9d4SSatish Balay v += mat->lda; 2012289bc588SBarry Smith } 2013064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 2014289bc588SBarry Smith } 20159566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n)); 2016e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No two norm"); 20179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&vv)); 20183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2019289bc588SBarry Smith } 2020289bc588SBarry Smith 2021d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqDense(Mat A, MatOption op, PetscBool flg) 2022d71ae5a4SJacob Faibussowitsch { 2023c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense *)A->data; 202467e560aaSBarry Smith 20253a40ed3dSBarry Smith PetscFunctionBegin; 2026b5a2b587SKris Buschelman switch (op) { 2027d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 2028d71ae5a4SJacob Faibussowitsch aij->roworiented = flg; 2029d71ae5a4SJacob Faibussowitsch break; 2030512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 2031b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 20323971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 20338c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 203413fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 2035b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2036b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 20370f8fb01aSBarry Smith case MAT_IGNORE_ZERO_ENTRIES: 20385021d80fSJed Brown case MAT_IGNORE_LOWER_TRIANGULAR: 2039d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 2040d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 2041d71ae5a4SJacob Faibussowitsch break; 20425021d80fSJed Brown case MAT_SPD: 204377e54ba9SKris Buschelman case MAT_SYMMETRIC: 204477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 20459a4540c5SBarry Smith case MAT_HERMITIAN: 20469a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 2047b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 2048d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 2049d71ae5a4SJacob Faibussowitsch break; 2050d71ae5a4SJacob Faibussowitsch default: 2051d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 20523a40ed3dSBarry Smith } 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054289bc588SBarry Smith } 2055289bc588SBarry Smith 2056d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqDense(Mat A) 2057d71ae5a4SJacob Faibussowitsch { 2058ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)A->data; 20593d8925e7SStefano Zampini PetscInt lda = l->lda, m = A->rmap->n, n = A->cmap->n, j; 2060ca15aa20SStefano Zampini PetscScalar *v; 20613a40ed3dSBarry Smith 20623a40ed3dSBarry Smith PetscFunctionBegin; 20639566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A, &v)); 2064a5ce6ee0Svictorle if (lda > m) { 206548a46eb9SPierre Jolivet for (j = 0; j < n; j++) PetscCall(PetscArrayzero(v + j * lda, m)); 2066a5ce6ee0Svictorle } else { 20679566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(v, PetscInt64Mult(m, n))); 2068a5ce6ee0Svictorle } 20699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A, &v)); 20703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20716f0a148fSBarry Smith } 20726f0a148fSBarry Smith 2073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroRows_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 2074d71ae5a4SJacob Faibussowitsch { 2075ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)A->data; 2076b9679d65SBarry Smith PetscInt m = l->lda, n = A->cmap->n, i, j; 2077ca15aa20SStefano Zampini PetscScalar *slot, *bb, *v; 207897b48c8fSBarry Smith const PetscScalar *xx; 207955659b69SBarry Smith 20803a40ed3dSBarry Smith PetscFunctionBegin; 208176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2082b9679d65SBarry Smith for (i = 0; i < N; i++) { 208308401ef6SPierre Jolivet PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed"); 208408401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n); 2085b9679d65SBarry Smith } 208676bd3646SJed Brown } 20873ba16761SJacob Faibussowitsch if (!N) PetscFunctionReturn(PETSC_SUCCESS); 2088b9679d65SBarry Smith 208997b48c8fSBarry Smith /* fix right hand side if needed */ 209097b48c8fSBarry Smith if (x && b) { 20919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 20929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 20932205254eSKarl Rupp for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]]; 20949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 20959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 209697b48c8fSBarry Smith } 209797b48c8fSBarry Smith 20989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 20996f0a148fSBarry Smith for (i = 0; i < N; i++) { 2100ca15aa20SStefano Zampini slot = v + rows[i]; 21019371c9d4SSatish Balay for (j = 0; j < n; j++) { 21029371c9d4SSatish Balay *slot = 0.0; 21039371c9d4SSatish Balay slot += m; 21049371c9d4SSatish Balay } 21056f0a148fSBarry Smith } 2106f4df32b1SMatthew Knepley if (diag != 0.0) { 210708401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 21086f0a148fSBarry Smith for (i = 0; i < N; i++) { 2109ca15aa20SStefano Zampini slot = v + (m + 1) * rows[i]; 2110f4df32b1SMatthew Knepley *slot = diag; 21116f0a148fSBarry Smith } 21126f0a148fSBarry Smith } 21139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 21143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21156f0a148fSBarry Smith } 2116557bce09SLois Curfman McInnes 2117d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A, PetscInt *lda) 2118d71ae5a4SJacob Faibussowitsch { 211949a6ff4bSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 212049a6ff4bSBarry Smith 212149a6ff4bSBarry Smith PetscFunctionBegin; 212249a6ff4bSBarry Smith *lda = mat->lda; 21233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 212449a6ff4bSBarry Smith } 212549a6ff4bSBarry Smith 2126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArray_SeqDense(Mat A, PetscScalar **array) 2127d71ae5a4SJacob Faibussowitsch { 2128c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 21293a40ed3dSBarry Smith 21303a40ed3dSBarry Smith PetscFunctionBegin; 213128b400f6SJacob Faibussowitsch PetscCheck(!mat->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 213264e87e97SBarry Smith *array = mat->v; 21333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213464e87e97SBarry Smith } 21350754003eSLois Curfman McInnes 2136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A, PetscScalar **array) 2137d71ae5a4SJacob Faibussowitsch { 21383a40ed3dSBarry Smith PetscFunctionBegin; 213975f6d85dSStefano Zampini if (array) *array = NULL; 21403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2141ff14e315SSatish Balay } 21420754003eSLois Curfman McInnes 21430f74d2c1SSatish Balay /*@ 214411a5261eSBarry Smith MatDenseGetLDA - gets the leading dimension of the array returned from `MatDenseGetArray()` 214549a6ff4bSBarry Smith 2146*2ef1f0ffSBarry Smith Not Collective 214749a6ff4bSBarry Smith 214849a6ff4bSBarry Smith Input Parameter: 214911a5261eSBarry Smith . mat - a `MATDENSE` or `MATDENSECUDA` matrix 215049a6ff4bSBarry Smith 215149a6ff4bSBarry Smith Output Parameter: 215249a6ff4bSBarry Smith . lda - the leading dimension 215349a6ff4bSBarry Smith 215449a6ff4bSBarry Smith Level: intermediate 215549a6ff4bSBarry Smith 2156*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseSetLDA()` 215749a6ff4bSBarry Smith @*/ 2158d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLDA(Mat A, PetscInt *lda) 2159d71ae5a4SJacob Faibussowitsch { 216049a6ff4bSBarry Smith PetscFunctionBegin; 2161d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2162dadcf809SJacob Faibussowitsch PetscValidIntPointer(lda, 2); 216375f6d85dSStefano Zampini MatCheckPreallocated(A, 1); 2164cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetLDA_C", (Mat, PetscInt *), (A, lda)); 21653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 216649a6ff4bSBarry Smith } 216749a6ff4bSBarry Smith 21680f74d2c1SSatish Balay /*@ 216911a5261eSBarry Smith MatDenseSetLDA - Sets the leading dimension of the array used by the `MATDENSE` matrix 2170ad16ce7aSStefano Zampini 2171*2ef1f0ffSBarry Smith Not Collective 2172ad16ce7aSStefano Zampini 2173d8d19677SJose E. Roman Input Parameters: 217411a5261eSBarry Smith + mat - a `MATDENSE` or `MATDENSECUDA` matrix 2175ad16ce7aSStefano Zampini - lda - the leading dimension 2176ad16ce7aSStefano Zampini 2177ad16ce7aSStefano Zampini Level: intermediate 2178ad16ce7aSStefano Zampini 2179*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetLDA()` 2180ad16ce7aSStefano Zampini @*/ 2181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA(Mat A, PetscInt lda) 2182d71ae5a4SJacob Faibussowitsch { 2183ad16ce7aSStefano Zampini PetscFunctionBegin; 2184ad16ce7aSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2185cac4c232SBarry Smith PetscTryMethod(A, "MatDenseSetLDA_C", (Mat, PetscInt), (A, lda)); 21863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2187ad16ce7aSStefano Zampini } 2188ad16ce7aSStefano Zampini 2189ad16ce7aSStefano Zampini /*@C 219011a5261eSBarry Smith MatDenseGetArray - gives read-write access to the array where the data for a `MATDENSE` matrix is stored 219173a71a0fSBarry Smith 2192c3339decSBarry Smith Logically Collective 219373a71a0fSBarry Smith 219473a71a0fSBarry Smith Input Parameter: 21956947451fSStefano Zampini . mat - a dense matrix 219673a71a0fSBarry Smith 219773a71a0fSBarry Smith Output Parameter: 219873a71a0fSBarry Smith . array - pointer to the data 219973a71a0fSBarry Smith 220073a71a0fSBarry Smith Level: intermediate 220173a71a0fSBarry Smith 22020ab4885dSBarry Smith Fortran Note: 22030ab4885dSBarry Smith `MatDenseGetArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseGetArrayF90()` 22040ab4885dSBarry Smith 2205*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 220673a71a0fSBarry Smith @*/ 2207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArray(Mat A, PetscScalar **array) 2208d71ae5a4SJacob Faibussowitsch { 220973a71a0fSBarry Smith PetscFunctionBegin; 2210d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2211d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2212cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array)); 22133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221473a71a0fSBarry Smith } 221573a71a0fSBarry Smith 2216dec5eb66SMatthew G Knepley /*@C 221711a5261eSBarry Smith MatDenseRestoreArray - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArray()` 221873a71a0fSBarry Smith 2219c3339decSBarry Smith Logically Collective 22208572280aSBarry Smith 22218572280aSBarry Smith Input Parameters: 22226947451fSStefano Zampini + mat - a dense matrix 2223*2ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 22248572280aSBarry Smith 22258572280aSBarry Smith Level: intermediate 22268572280aSBarry Smith 22270ab4885dSBarry Smith Fortran Note: 22280ab4885dSBarry Smith `MatDenseRestoreArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseRestoreArrayF90()` 22290ab4885dSBarry Smith 2230*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 22318572280aSBarry Smith @*/ 2232d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray(Mat A, PetscScalar **array) 2233d71ae5a4SJacob Faibussowitsch { 22348572280aSBarry Smith PetscFunctionBegin; 2235d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2236d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2237cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array)); 22389566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 223947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 2240637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 2241637a0070SStefano Zampini #endif 22423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22438572280aSBarry Smith } 22448572280aSBarry Smith 22458572280aSBarry Smith /*@C 224611a5261eSBarry Smith MatDenseGetArrayRead - gives read-only access to the array where the data for a `MATDENSE` matrix is stored 22478572280aSBarry Smith 22480ab4885dSBarry Smith Not Collective; No Fortran Support 22498572280aSBarry Smith 22508572280aSBarry Smith Input Parameter: 22516947451fSStefano Zampini . mat - a dense matrix 22528572280aSBarry Smith 22538572280aSBarry Smith Output Parameter: 22548572280aSBarry Smith . array - pointer to the data 22558572280aSBarry Smith 22568572280aSBarry Smith Level: intermediate 22578572280aSBarry Smith 2258*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 22598572280aSBarry Smith @*/ 2260d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArrayRead(Mat A, const PetscScalar **array) 2261d71ae5a4SJacob Faibussowitsch { 22628572280aSBarry Smith PetscFunctionBegin; 2263d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2264d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2265cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, const PetscScalar **), (A, array)); 22663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22678572280aSBarry Smith } 22688572280aSBarry Smith 22698572280aSBarry Smith /*@C 227011a5261eSBarry Smith MatDenseRestoreArrayRead - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayRead()` 22718572280aSBarry Smith 22720ab4885dSBarry Smith Not Collective; No Fortran Support 227373a71a0fSBarry Smith 227473a71a0fSBarry Smith Input Parameters: 22756947451fSStefano Zampini + mat - a dense matrix 2276*2ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 227773a71a0fSBarry Smith 227873a71a0fSBarry Smith Level: intermediate 227973a71a0fSBarry Smith 2280*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 228173a71a0fSBarry Smith @*/ 2282d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayRead(Mat A, const PetscScalar **array) 2283d71ae5a4SJacob Faibussowitsch { 228473a71a0fSBarry Smith PetscFunctionBegin; 2285d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2286d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2287cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, const PetscScalar **), (A, array)); 22883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 228973a71a0fSBarry Smith } 229073a71a0fSBarry Smith 22916947451fSStefano Zampini /*@C 229211a5261eSBarry Smith MatDenseGetArrayWrite - gives write-only access to the array where the data for a `MATDENSE` matrix is stored 22936947451fSStefano Zampini 22940ab4885dSBarry Smith Not Collective; No Fortran Support 22956947451fSStefano Zampini 22966947451fSStefano Zampini Input Parameter: 22976947451fSStefano Zampini . mat - a dense matrix 22986947451fSStefano Zampini 22996947451fSStefano Zampini Output Parameter: 23006947451fSStefano Zampini . array - pointer to the data 23016947451fSStefano Zampini 23026947451fSStefano Zampini Level: intermediate 23036947451fSStefano Zampini 2304*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 23056947451fSStefano Zampini @*/ 2306d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArrayWrite(Mat A, PetscScalar **array) 2307d71ae5a4SJacob Faibussowitsch { 23086947451fSStefano Zampini PetscFunctionBegin; 2309d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2310d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2311cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array)); 23123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23136947451fSStefano Zampini } 23146947451fSStefano Zampini 23156947451fSStefano Zampini /*@C 231611a5261eSBarry Smith MatDenseRestoreArrayWrite - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayWrite()` 23176947451fSStefano Zampini 23180ab4885dSBarry Smith Not Collective; No Fortran Support 23196947451fSStefano Zampini 23206947451fSStefano Zampini Input Parameters: 23216947451fSStefano Zampini + mat - a dense matrix 2322*2ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 23236947451fSStefano Zampini 23246947451fSStefano Zampini Level: intermediate 23256947451fSStefano Zampini 2326*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 23276947451fSStefano Zampini @*/ 2328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayWrite(Mat A, PetscScalar **array) 2329d71ae5a4SJacob Faibussowitsch { 23306947451fSStefano Zampini PetscFunctionBegin; 2331d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2332d5ea218eSStefano Zampini PetscValidPointer(array, 2); 2333cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array)); 23349566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 233547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 23366947451fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 23376947451fSStefano Zampini #endif 23383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23396947451fSStefano Zampini } 23406947451fSStefano Zampini 2341cd3f9d89SJunchao Zhang /*@C 2342cd3f9d89SJunchao Zhang MatDenseGetArrayAndMemType - gives read-write access to the array where the data for a `MATDENSE` matrix is stored 2343cd3f9d89SJunchao Zhang 2344cd3f9d89SJunchao Zhang Logically Collective 2345cd3f9d89SJunchao Zhang 2346cd3f9d89SJunchao Zhang Input Parameter: 2347cd3f9d89SJunchao Zhang . mat - a dense matrix 2348cd3f9d89SJunchao Zhang 2349cd3f9d89SJunchao Zhang Output Parameters: 2350cd3f9d89SJunchao Zhang + array - pointer to the data 2351cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2352cd3f9d89SJunchao Zhang 2353cd3f9d89SJunchao Zhang Level: intermediate 2354cd3f9d89SJunchao Zhang 2355*2ef1f0ffSBarry Smith Notes: 2356*2ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 2357*2ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 2358*2ef1f0ffSBarry Smith 2359*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArrayRead()`, 2360cd3f9d89SJunchao Zhang `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2361cd3f9d89SJunchao Zhang @*/ 2362cd3f9d89SJunchao Zhang PetscErrorCode MatDenseGetArrayAndMemType(Mat A, PetscScalar **array, PetscMemType *mtype) 2363cd3f9d89SJunchao Zhang { 2364cd3f9d89SJunchao Zhang PetscBool isMPI; 2365cd3f9d89SJunchao Zhang 2366cd3f9d89SJunchao Zhang PetscFunctionBegin; 2367cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2368cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2369e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2370cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2371cd3f9d89SJunchao Zhang if (isMPI) { 2372cd3f9d89SJunchao Zhang /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */ 2373cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2374cd3f9d89SJunchao Zhang } else { 2375cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *); 23763ba16761SJacob Faibussowitsch 23773ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayAndMemType_C", &fptr)); 2378cd3f9d89SJunchao Zhang if (fptr) { 2379cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2380cd3f9d89SJunchao Zhang } else { 2381cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array)); 2382cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2383cd3f9d89SJunchao Zhang } 2384cd3f9d89SJunchao Zhang } 23853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2386cd3f9d89SJunchao Zhang } 2387cd3f9d89SJunchao Zhang 2388cd3f9d89SJunchao Zhang /*@C 2389cd3f9d89SJunchao Zhang MatDenseRestoreArrayAndMemType - returns access to the array that is obtained by `MatDenseGetArrayAndMemType()` 2390cd3f9d89SJunchao Zhang 2391cd3f9d89SJunchao Zhang Logically Collective 2392cd3f9d89SJunchao Zhang 2393cd3f9d89SJunchao Zhang Input Parameters: 2394cd3f9d89SJunchao Zhang + mat - a dense matrix 2395cd3f9d89SJunchao Zhang - array - pointer to the data 2396cd3f9d89SJunchao Zhang 2397cd3f9d89SJunchao Zhang Level: intermediate 2398cd3f9d89SJunchao Zhang 2399*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2400cd3f9d89SJunchao Zhang @*/ 2401cd3f9d89SJunchao Zhang PetscErrorCode MatDenseRestoreArrayAndMemType(Mat A, PetscScalar **array) 2402cd3f9d89SJunchao Zhang { 2403cd3f9d89SJunchao Zhang PetscBool isMPI; 2404cd3f9d89SJunchao Zhang 2405cd3f9d89SJunchao Zhang PetscFunctionBegin; 2406cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2407cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2408cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2409cd3f9d89SJunchao Zhang if (isMPI) { 2410cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2411cd3f9d89SJunchao Zhang } else { 2412cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **); 24133ba16761SJacob Faibussowitsch 24143ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayAndMemType_C", &fptr)); 2415cd3f9d89SJunchao Zhang if (fptr) { 2416cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2417cd3f9d89SJunchao Zhang } else { 2418cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array)); 2419cd3f9d89SJunchao Zhang } 2420cd3f9d89SJunchao Zhang *array = NULL; 2421cd3f9d89SJunchao Zhang } 2422cd3f9d89SJunchao Zhang PetscCall(PetscObjectStateIncrease((PetscObject)A)); 24233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2424cd3f9d89SJunchao Zhang } 2425cd3f9d89SJunchao Zhang 2426cd3f9d89SJunchao Zhang /*@C 2427cd3f9d89SJunchao Zhang MatDenseGetArrayReadAndMemType - gives read-only access to the array where the data for a `MATDENSE` matrix is stored 2428cd3f9d89SJunchao Zhang 2429cd3f9d89SJunchao Zhang Logically Collective 2430cd3f9d89SJunchao Zhang 2431cd3f9d89SJunchao Zhang Input Parameter: 2432cd3f9d89SJunchao Zhang . mat - a dense matrix 2433cd3f9d89SJunchao Zhang 2434cd3f9d89SJunchao Zhang Output Parameters: 2435cd3f9d89SJunchao Zhang + array - pointer to the data 2436cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2437cd3f9d89SJunchao Zhang 2438cd3f9d89SJunchao Zhang Level: intermediate 2439cd3f9d89SJunchao Zhang 2440*2ef1f0ffSBarry Smith Notes: 2441*2ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 2442*2ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 2443*2ef1f0ffSBarry Smith 2444*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`, 2445cd3f9d89SJunchao Zhang `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2446cd3f9d89SJunchao Zhang @*/ 2447cd3f9d89SJunchao Zhang PetscErrorCode MatDenseGetArrayReadAndMemType(Mat A, const PetscScalar **array, PetscMemType *mtype) 2448cd3f9d89SJunchao Zhang { 2449cd3f9d89SJunchao Zhang PetscBool isMPI; 2450cd3f9d89SJunchao Zhang 2451cd3f9d89SJunchao Zhang PetscFunctionBegin; 2452cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2453cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2454e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2455cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2456cd3f9d89SJunchao Zhang if (isMPI) { /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */ 2457cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2458cd3f9d89SJunchao Zhang } else { 2459cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, const PetscScalar **, PetscMemType *); 24603ba16761SJacob Faibussowitsch 24613ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayReadAndMemType_C", &fptr)); 2462cd3f9d89SJunchao Zhang if (fptr) { 2463cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2464cd3f9d89SJunchao Zhang } else { 2465cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, const PetscScalar **), (A, array)); 2466cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2467cd3f9d89SJunchao Zhang } 2468cd3f9d89SJunchao Zhang } 24693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2470cd3f9d89SJunchao Zhang } 2471cd3f9d89SJunchao Zhang 2472cd3f9d89SJunchao Zhang /*@C 2473cd3f9d89SJunchao Zhang MatDenseRestoreArrayReadAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()` 2474cd3f9d89SJunchao Zhang 2475cd3f9d89SJunchao Zhang Logically Collective 2476cd3f9d89SJunchao Zhang 2477cd3f9d89SJunchao Zhang Input Parameters: 2478cd3f9d89SJunchao Zhang + mat - a dense matrix 2479cd3f9d89SJunchao Zhang - array - pointer to the data 2480cd3f9d89SJunchao Zhang 2481cd3f9d89SJunchao Zhang Level: intermediate 2482cd3f9d89SJunchao Zhang 2483*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2484cd3f9d89SJunchao Zhang @*/ 2485cd3f9d89SJunchao Zhang PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat A, const PetscScalar **array) 2486cd3f9d89SJunchao Zhang { 2487cd3f9d89SJunchao Zhang PetscBool isMPI; 2488cd3f9d89SJunchao Zhang 2489cd3f9d89SJunchao Zhang PetscFunctionBegin; 2490cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2491cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2492cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2493cd3f9d89SJunchao Zhang if (isMPI) { 2494cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2495cd3f9d89SJunchao Zhang } else { 2496cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, const PetscScalar **); 24973ba16761SJacob Faibussowitsch 24983ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayReadAndMemType_C", &fptr)); 2499cd3f9d89SJunchao Zhang if (fptr) { 2500cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2501cd3f9d89SJunchao Zhang } else { 2502cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, const PetscScalar **), (A, array)); 2503cd3f9d89SJunchao Zhang } 2504cd3f9d89SJunchao Zhang *array = NULL; 2505cd3f9d89SJunchao Zhang } 25063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2507cd3f9d89SJunchao Zhang } 2508cd3f9d89SJunchao Zhang 2509cd3f9d89SJunchao Zhang /*@C 2510cd3f9d89SJunchao Zhang MatDenseGetArrayWriteAndMemType - gives write-only access to the array where the data for a `MATDENSE` matrix is stored 2511cd3f9d89SJunchao Zhang 2512cd3f9d89SJunchao Zhang Logically Collective 2513cd3f9d89SJunchao Zhang 2514cd3f9d89SJunchao Zhang Input Parameter: 2515cd3f9d89SJunchao Zhang . mat - a dense matrix 2516cd3f9d89SJunchao Zhang 2517cd3f9d89SJunchao Zhang Output Parameters: 2518cd3f9d89SJunchao Zhang + array - pointer to the data 2519cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2520cd3f9d89SJunchao Zhang 2521cd3f9d89SJunchao Zhang Level: intermediate 2522cd3f9d89SJunchao Zhang 2523*2ef1f0ffSBarry Smith Notes: 2524*2ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 2525*2ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 2526*2ef1f0ffSBarry Smith 2527*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWriteAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayRead()`, 2528cd3f9d89SJunchao Zhang `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2529cd3f9d89SJunchao Zhang @*/ 2530cd3f9d89SJunchao Zhang PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat A, PetscScalar **array, PetscMemType *mtype) 2531cd3f9d89SJunchao Zhang { 2532cd3f9d89SJunchao Zhang PetscBool isMPI; 2533cd3f9d89SJunchao Zhang 2534cd3f9d89SJunchao Zhang PetscFunctionBegin; 2535cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2536cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2537e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2538cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2539cd3f9d89SJunchao Zhang if (isMPI) { 2540cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2541cd3f9d89SJunchao Zhang } else { 2542cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *); 25433ba16761SJacob Faibussowitsch 25443ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayWriteAndMemType_C", &fptr)); 2545cd3f9d89SJunchao Zhang if (fptr) { 2546cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2547cd3f9d89SJunchao Zhang } else { 2548cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array)); 2549cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2550cd3f9d89SJunchao Zhang } 2551cd3f9d89SJunchao Zhang } 25523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2553cd3f9d89SJunchao Zhang } 2554cd3f9d89SJunchao Zhang 2555cd3f9d89SJunchao Zhang /*@C 2556cd3f9d89SJunchao Zhang MatDenseRestoreArrayWriteAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()` 2557cd3f9d89SJunchao Zhang 2558cd3f9d89SJunchao Zhang Logically Collective 2559cd3f9d89SJunchao Zhang 2560cd3f9d89SJunchao Zhang Input Parameters: 2561cd3f9d89SJunchao Zhang + mat - a dense matrix 2562cd3f9d89SJunchao Zhang - array - pointer to the data 2563cd3f9d89SJunchao Zhang 2564cd3f9d89SJunchao Zhang Level: intermediate 2565cd3f9d89SJunchao Zhang 2566*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2567cd3f9d89SJunchao Zhang @*/ 2568cd3f9d89SJunchao Zhang PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat A, PetscScalar **array) 2569cd3f9d89SJunchao Zhang { 2570cd3f9d89SJunchao Zhang PetscBool isMPI; 2571cd3f9d89SJunchao Zhang 2572cd3f9d89SJunchao Zhang PetscFunctionBegin; 2573cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2574cd3f9d89SJunchao Zhang PetscValidPointer(array, 2); 2575cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2576cd3f9d89SJunchao Zhang if (isMPI) { 2577cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2578cd3f9d89SJunchao Zhang } else { 2579cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **); 25803ba16761SJacob Faibussowitsch 25813ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayWriteAndMemType_C", &fptr)); 2582cd3f9d89SJunchao Zhang if (fptr) { 2583cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2584cd3f9d89SJunchao Zhang } else { 2585cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array)); 2586cd3f9d89SJunchao Zhang } 2587cd3f9d89SJunchao Zhang *array = NULL; 2588cd3f9d89SJunchao Zhang } 2589cd3f9d89SJunchao Zhang PetscCall(PetscObjectStateIncrease((PetscObject)A)); 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2591cd3f9d89SJunchao Zhang } 2592cd3f9d89SJunchao Zhang 2593d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 2594d71ae5a4SJacob Faibussowitsch { 2595c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 2596bf5a80bcSToby Isaac PetscInt i, j, nrows, ncols, ldb; 25975d0c19d7SBarry Smith const PetscInt *irow, *icol; 259887828ca2SBarry Smith PetscScalar *av, *bv, *v = mat->v; 25990754003eSLois Curfman McInnes Mat newmat; 26000754003eSLois Curfman McInnes 26013a40ed3dSBarry Smith PetscFunctionBegin; 26029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 26039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &icol)); 26049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 26059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 26060754003eSLois Curfman McInnes 2607182d2002SSatish Balay /* Check submatrixcall */ 2608182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 260913f74950SBarry Smith PetscInt n_cols, n_rows; 26109566063dSJacob Faibussowitsch PetscCall(MatGetSize(*B, &n_rows, &n_cols)); 261121a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 2612f746d493SDmitry Karpeev /* resize the result matrix to match number of requested rows/columns */ 26139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, nrows, ncols, nrows, ncols)); 261421a2c019SBarry Smith } 2615182d2002SSatish Balay newmat = *B; 2616182d2002SSatish Balay } else { 26170754003eSLois Curfman McInnes /* Create and fill new matrix */ 26189566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 26199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, nrows, ncols)); 26209566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 26219566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(newmat, NULL)); 2622182d2002SSatish Balay } 2623182d2002SSatish Balay 2624182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 26259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmat, &bv)); 26269566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newmat, &ldb)); 2627182d2002SSatish Balay for (i = 0; i < ncols; i++) { 26286de62eeeSBarry Smith av = v + mat->lda * icol[i]; 2629ca15aa20SStefano Zampini for (j = 0; j < nrows; j++) bv[j] = av[irow[j]]; 2630bf5a80bcSToby Isaac bv += ldb; 26310754003eSLois Curfman McInnes } 26329566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmat, &bv)); 2633182d2002SSatish Balay 2634182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 26359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 26369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 26370754003eSLois Curfman McInnes 26380754003eSLois Curfman McInnes /* Free work space */ 26399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 26409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &icol)); 2641182d2002SSatish Balay *B = newmat; 26423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26430754003eSLois Curfman McInnes } 26440754003eSLois Curfman McInnes 2645d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 2646d71ae5a4SJacob Faibussowitsch { 264713f74950SBarry Smith PetscInt i; 2648905e6a2fSBarry Smith 26493a40ed3dSBarry Smith PetscFunctionBegin; 265048a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(PetscCalloc1(n, B)); 2651905e6a2fSBarry Smith 265248a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(MatCreateSubMatrix_SeqDense(A, irow[i], icol[i], scall, &(*B)[i])); 26533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2654905e6a2fSBarry Smith } 2655905e6a2fSBarry Smith 2656d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat, MatAssemblyType mode) 2657d71ae5a4SJacob Faibussowitsch { 2658c0aa2d19SHong Zhang PetscFunctionBegin; 26593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2660c0aa2d19SHong Zhang } 2661c0aa2d19SHong Zhang 2662d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat, MatAssemblyType mode) 2663d71ae5a4SJacob Faibussowitsch { 2664c0aa2d19SHong Zhang PetscFunctionBegin; 26653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2666c0aa2d19SHong Zhang } 2667c0aa2d19SHong Zhang 2668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqDense(Mat A, Mat B, MatStructure str) 2669d71ae5a4SJacob Faibussowitsch { 26704b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data; 2671ca15aa20SStefano Zampini const PetscScalar *va; 2672ca15aa20SStefano Zampini PetscScalar *vb; 2673d0f46423SBarry Smith PetscInt lda1 = a->lda, lda2 = b->lda, m = A->rmap->n, n = A->cmap->n, j; 26743a40ed3dSBarry Smith 26753a40ed3dSBarry Smith PetscFunctionBegin; 267633f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 267733f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 26789566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 26793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26803a40ed3dSBarry Smith } 2681aed4548fSBarry Smith PetscCheck(m == B->rmap->n && n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "size(B) != size(A)"); 26829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &va)); 26839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(B, &vb)); 2684a5ce6ee0Svictorle if (lda1 > m || lda2 > m) { 268548a46eb9SPierre Jolivet for (j = 0; j < n; j++) PetscCall(PetscArraycpy(vb + j * lda2, va + j * lda1, m)); 2686a5ce6ee0Svictorle } else { 26879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(vb, va, A->rmap->n * A->cmap->n)); 2688a5ce6ee0Svictorle } 26899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(B, &vb)); 26909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &va)); 26919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2694273d9f13SBarry Smith } 2695273d9f13SBarry Smith 2696d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqDense(Mat A) 2697d71ae5a4SJacob Faibussowitsch { 2698273d9f13SBarry Smith PetscFunctionBegin; 26999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 27009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 270148a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatSeqDenseSetPreallocation(A, NULL)); 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27034b0e389bSBarry Smith } 27044b0e389bSBarry Smith 2705d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatConjugate_SeqDense(Mat A) 2706d71ae5a4SJacob Faibussowitsch { 27074396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 270806c5243aSJose E. Roman PetscInt i, j; 27094396437dSToby Isaac PetscInt min = PetscMin(A->rmap->n, A->cmap->n); 2710ca15aa20SStefano Zampini PetscScalar *aa; 2711ba337c44SJed Brown 2712ba337c44SJed Brown PetscFunctionBegin; 27139566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 271406c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 271506c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscConj(aa[i + j * mat->lda]); 271606c5243aSJose E. Roman } 27179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 27189371c9d4SSatish Balay if (mat->tau) 27199371c9d4SSatish Balay for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]); 27203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2721ba337c44SJed Brown } 2722ba337c44SJed Brown 2723d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRealPart_SeqDense(Mat A) 2724d71ae5a4SJacob Faibussowitsch { 272506c5243aSJose E. Roman Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 272606c5243aSJose E. Roman PetscInt i, j; 2727ca15aa20SStefano Zampini PetscScalar *aa; 2728ba337c44SJed Brown 2729ba337c44SJed Brown PetscFunctionBegin; 27309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 273106c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 273206c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscRealPart(aa[i + j * mat->lda]); 273306c5243aSJose E. Roman } 27349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 27353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2736ba337c44SJed Brown } 2737ba337c44SJed Brown 2738d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 2739d71ae5a4SJacob Faibussowitsch { 274006c5243aSJose E. Roman Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 274106c5243aSJose E. Roman PetscInt i, j; 2742ca15aa20SStefano Zampini PetscScalar *aa; 2743ba337c44SJed Brown 2744ba337c44SJed Brown PetscFunctionBegin; 27459566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 274606c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 274706c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscImaginaryPart(aa[i + j * mat->lda]); 274806c5243aSJose E. Roman } 27499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 27503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2751ba337c44SJed Brown } 2752284134d9SBarry Smith 2753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2754d71ae5a4SJacob Faibussowitsch { 2755d0f46423SBarry Smith PetscInt m = A->rmap->n, n = B->cmap->n; 275647d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 2757a9fe9ddaSSatish Balay 2758ee16a9a1SHong Zhang PetscFunctionBegin; 27599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 276047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 27619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 276247d993e7Ssuyashtn #endif 276347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 276447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 276547d993e7Ssuyashtn #endif 27667a3c3d58SStefano Zampini if (!cisdense) { 27677a3c3d58SStefano Zampini PetscBool flg; 27687a3c3d58SStefano Zampini 27699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 27709566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 27717a3c3d58SStefano Zampini } 27729566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 27733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2774ee16a9a1SHong Zhang } 2775a9fe9ddaSSatish Balay 2776d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2777d71ae5a4SJacob Faibussowitsch { 27786718818eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data, *c = (Mat_SeqDense *)C->data; 27790805154bSBarry Smith PetscBLASInt m, n, k; 2780ca15aa20SStefano Zampini const PetscScalar *av, *bv; 2781ca15aa20SStefano Zampini PetscScalar *cv; 2782a9fe9ddaSSatish Balay PetscScalar _DOne = 1.0, _DZero = 0.0; 2783a9fe9ddaSSatish Balay 2784a9fe9ddaSSatish Balay PetscFunctionBegin; 27859566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 27869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 27879566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 27883ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 27899566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 27909566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 27919566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2792792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 27939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 27949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 27959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 27969566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 27973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2798a9fe9ddaSSatish Balay } 2799a9fe9ddaSSatish Balay 2800d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2801d71ae5a4SJacob Faibussowitsch { 280269f65d41SStefano Zampini PetscInt m = A->rmap->n, n = B->rmap->n; 280347d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 280469f65d41SStefano Zampini 280569f65d41SStefano Zampini PetscFunctionBegin; 28069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 280747d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 28089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 280947d993e7Ssuyashtn #endif 281047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 281147d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 281247d993e7Ssuyashtn #endif 28137a3c3d58SStefano Zampini if (!cisdense) { 28147a3c3d58SStefano Zampini PetscBool flg; 28157a3c3d58SStefano Zampini 28169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 28179566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 28187a3c3d58SStefano Zampini } 28199566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 28203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282169f65d41SStefano Zampini } 282269f65d41SStefano Zampini 2823d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2824d71ae5a4SJacob Faibussowitsch { 282569f65d41SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 282669f65d41SStefano Zampini Mat_SeqDense *b = (Mat_SeqDense *)B->data; 282769f65d41SStefano Zampini Mat_SeqDense *c = (Mat_SeqDense *)C->data; 28286718818eSStefano Zampini const PetscScalar *av, *bv; 28296718818eSStefano Zampini PetscScalar *cv; 283069f65d41SStefano Zampini PetscBLASInt m, n, k; 283169f65d41SStefano Zampini PetscScalar _DOne = 1.0, _DZero = 0.0; 283269f65d41SStefano Zampini 283369f65d41SStefano Zampini PetscFunctionBegin; 28349566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 28359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 28369566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 28373ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 28389566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 28399566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 28409566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2841792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 28429566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 28439566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 28449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 28459566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 28463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284769f65d41SStefano Zampini } 284869f65d41SStefano Zampini 2849d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2850d71ae5a4SJacob Faibussowitsch { 2851d0f46423SBarry Smith PetscInt m = A->cmap->n, n = B->cmap->n; 285247d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 2853a9fe9ddaSSatish Balay 2854ee16a9a1SHong Zhang PetscFunctionBegin; 28559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 285647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 28579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 285847d993e7Ssuyashtn #endif 285947d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 286047d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 286147d993e7Ssuyashtn #endif 28627a3c3d58SStefano Zampini if (!cisdense) { 28637a3c3d58SStefano Zampini PetscBool flg; 28647a3c3d58SStefano Zampini 28659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 28669566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 28677a3c3d58SStefano Zampini } 28689566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 28693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2870ee16a9a1SHong Zhang } 2871a9fe9ddaSSatish Balay 2872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2873d71ae5a4SJacob Faibussowitsch { 2874a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2875a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense *)B->data; 2876a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense *)C->data; 28776718818eSStefano Zampini const PetscScalar *av, *bv; 28786718818eSStefano Zampini PetscScalar *cv; 28790805154bSBarry Smith PetscBLASInt m, n, k; 2880a9fe9ddaSSatish Balay PetscScalar _DOne = 1.0, _DZero = 0.0; 2881a9fe9ddaSSatish Balay 2882a9fe9ddaSSatish Balay PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 28849566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 28859566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &k)); 28863ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 28879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 28889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 28899566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2890792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("T", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 28919566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 28929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 28939566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 28949566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 28953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2896a9fe9ddaSSatish Balay } 2897985db425SBarry Smith 2898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C) 2899d71ae5a4SJacob Faibussowitsch { 29004222ddf1SHong Zhang PetscFunctionBegin; 29014222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense; 29024222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 29033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29044222ddf1SHong Zhang } 29054222ddf1SHong Zhang 2906d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C) 2907d71ae5a4SJacob Faibussowitsch { 29084222ddf1SHong Zhang PetscFunctionBegin; 29094222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense; 29104222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 29113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29124222ddf1SHong Zhang } 29134222ddf1SHong Zhang 2914d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C) 2915d71ae5a4SJacob Faibussowitsch { 29164222ddf1SHong Zhang PetscFunctionBegin; 29174222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense; 29184222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29204222ddf1SHong Zhang } 29214222ddf1SHong Zhang 2922d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C) 2923d71ae5a4SJacob Faibussowitsch { 29244222ddf1SHong Zhang Mat_Product *product = C->product; 29254222ddf1SHong Zhang 29264222ddf1SHong Zhang PetscFunctionBegin; 29274222ddf1SHong Zhang switch (product->type) { 2928d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2929d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AB(C)); 2930d71ae5a4SJacob Faibussowitsch break; 2931d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2932d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AtB(C)); 2933d71ae5a4SJacob Faibussowitsch break; 2934d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2935d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_ABt(C)); 2936d71ae5a4SJacob Faibussowitsch break; 2937d71ae5a4SJacob Faibussowitsch default: 2938d71ae5a4SJacob Faibussowitsch break; 29394222ddf1SHong Zhang } 29403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29414222ddf1SHong Zhang } 29424222ddf1SHong Zhang 2943d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMax_SeqDense(Mat A, Vec v, PetscInt idx[]) 2944d71ae5a4SJacob Faibussowitsch { 2945985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2946d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 2947985db425SBarry Smith PetscScalar *x; 2948ca15aa20SStefano Zampini const PetscScalar *aa; 2949985db425SBarry Smith 2950985db425SBarry Smith PetscFunctionBegin; 295128b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29529566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 29549566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 295508401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2956985db425SBarry Smith for (i = 0; i < m; i++) { 29579371c9d4SSatish Balay x[i] = aa[i]; 29589371c9d4SSatish Balay if (idx) idx[i] = 0; 2959985db425SBarry Smith for (j = 1; j < n; j++) { 29609371c9d4SSatish Balay if (PetscRealPart(x[i]) < PetscRealPart(aa[i + a->lda * j])) { 29619371c9d4SSatish Balay x[i] = aa[i + a->lda * j]; 29629371c9d4SSatish Balay if (idx) idx[i] = j; 29639371c9d4SSatish Balay } 2964985db425SBarry Smith } 2965985db425SBarry Smith } 29669566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29679566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2969985db425SBarry Smith } 2970985db425SBarry Smith 2971d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A, Vec v, PetscInt idx[]) 2972d71ae5a4SJacob Faibussowitsch { 2973985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2974d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 2975985db425SBarry Smith PetscScalar *x; 2976985db425SBarry Smith PetscReal atmp; 2977ca15aa20SStefano Zampini const PetscScalar *aa; 2978985db425SBarry Smith 2979985db425SBarry Smith PetscFunctionBegin; 298028b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29819566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29829566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 29839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 298408401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2985985db425SBarry Smith for (i = 0; i < m; i++) { 29869189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 2987985db425SBarry Smith for (j = 1; j < n; j++) { 2988ca15aa20SStefano Zampini atmp = PetscAbsScalar(aa[i + a->lda * j]); 29899371c9d4SSatish Balay if (PetscAbsScalar(x[i]) < atmp) { 29909371c9d4SSatish Balay x[i] = atmp; 29919371c9d4SSatish Balay if (idx) idx[i] = j; 29929371c9d4SSatish Balay } 2993985db425SBarry Smith } 2994985db425SBarry Smith } 29959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2998985db425SBarry Smith } 2999985db425SBarry Smith 3000d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMin_SeqDense(Mat A, Vec v, PetscInt idx[]) 3001d71ae5a4SJacob Faibussowitsch { 3002985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 3003d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 3004985db425SBarry Smith PetscScalar *x; 3005ca15aa20SStefano Zampini const PetscScalar *aa; 3006985db425SBarry Smith 3007985db425SBarry Smith PetscFunctionBegin; 300828b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 30099566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 30109566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 30119566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 301208401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 3013985db425SBarry Smith for (i = 0; i < m; i++) { 30149371c9d4SSatish Balay x[i] = aa[i]; 30159371c9d4SSatish Balay if (idx) idx[i] = 0; 3016985db425SBarry Smith for (j = 1; j < n; j++) { 30179371c9d4SSatish Balay if (PetscRealPart(x[i]) > PetscRealPart(aa[i + a->lda * j])) { 30189371c9d4SSatish Balay x[i] = aa[i + a->lda * j]; 30199371c9d4SSatish Balay if (idx) idx[i] = j; 30209371c9d4SSatish Balay } 3021985db425SBarry Smith } 3022985db425SBarry Smith } 30239566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 30249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 30253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3026985db425SBarry Smith } 3027985db425SBarry Smith 3028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnVector_SeqDense(Mat A, Vec v, PetscInt col) 3029d71ae5a4SJacob Faibussowitsch { 30308d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 30318d0534beSBarry Smith PetscScalar *x; 3032ca15aa20SStefano Zampini const PetscScalar *aa; 30338d0534beSBarry Smith 30348d0534beSBarry Smith PetscFunctionBegin; 303528b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 30369566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 30379566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 30389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(x, aa + col * a->lda, A->rmap->n)); 30399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 30409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 30413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30428d0534beSBarry Smith } 30438d0534beSBarry Smith 3044d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat A, PetscInt type, PetscReal *reductions) 3045d71ae5a4SJacob Faibussowitsch { 30460716a85fSBarry Smith PetscInt i, j, m, n; 30471683a169SBarry Smith const PetscScalar *a; 30480716a85fSBarry Smith 30490716a85fSBarry Smith PetscFunctionBegin; 30509566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 30519566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(reductions, n)); 30529566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &a)); 3053857cbf51SRichard Tran Mills if (type == NORM_2) { 30540716a85fSBarry Smith for (i = 0; i < n; i++) { 3055ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j] * a[j]); 30560716a85fSBarry Smith a += m; 30570716a85fSBarry Smith } 3058857cbf51SRichard Tran Mills } else if (type == NORM_1) { 30590716a85fSBarry Smith for (i = 0; i < n; i++) { 3060ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j]); 30610716a85fSBarry Smith a += m; 30620716a85fSBarry Smith } 3063857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 30640716a85fSBarry Smith for (i = 0; i < n; i++) { 3065ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] = PetscMax(PetscAbsScalar(a[j]), reductions[i]); 30660716a85fSBarry Smith a += m; 30670716a85fSBarry Smith } 3068857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 3069a873a8cdSSam Reynolds for (i = 0; i < n; i++) { 3070ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscRealPart(a[j]); 3071a873a8cdSSam Reynolds a += m; 3072a873a8cdSSam Reynolds } 3073857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 3074857cbf51SRichard Tran Mills for (i = 0; i < n; i++) { 3075ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscImaginaryPart(a[j]); 3076857cbf51SRichard Tran Mills a += m; 3077857cbf51SRichard Tran Mills } 3078857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 30799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &a)); 3080857cbf51SRichard Tran Mills if (type == NORM_2) { 3081a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 3082857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 3083a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 30840716a85fSBarry Smith } 30853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30860716a85fSBarry Smith } 30870716a85fSBarry Smith 3088d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetRandom_SeqDense(Mat x, PetscRandom rctx) 3089d71ae5a4SJacob Faibussowitsch { 309073a71a0fSBarry Smith PetscScalar *a; 3091637a0070SStefano Zampini PetscInt lda, m, n, i, j; 309273a71a0fSBarry Smith 309373a71a0fSBarry Smith PetscFunctionBegin; 30949566063dSJacob Faibussowitsch PetscCall(MatGetSize(x, &m, &n)); 30959566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(x, &lda)); 30963faff063SStefano Zampini PetscCall(MatDenseGetArrayWrite(x, &a)); 3097637a0070SStefano Zampini for (j = 0; j < n; j++) { 309848a46eb9SPierre Jolivet for (i = 0; i < m; i++) PetscCall(PetscRandomGetValue(rctx, a + j * lda + i)); 309973a71a0fSBarry Smith } 31003faff063SStefano Zampini PetscCall(MatDenseRestoreArrayWrite(x, &a)); 31013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 310273a71a0fSBarry Smith } 310373a71a0fSBarry Smith 3104d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A, PetscBool *missing, PetscInt *d) 3105d71ae5a4SJacob Faibussowitsch { 31063b49f96aSBarry Smith PetscFunctionBegin; 31073b49f96aSBarry Smith *missing = PETSC_FALSE; 31083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31093b49f96aSBarry Smith } 311073a71a0fSBarry Smith 3111ca15aa20SStefano Zampini /* vals is not const */ 3112d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A, PetscInt col, PetscScalar **vals) 3113d71ae5a4SJacob Faibussowitsch { 311486aefd0dSHong Zhang Mat_SeqDense *a = (Mat_SeqDense *)A->data; 3115ca15aa20SStefano Zampini PetscScalar *v; 311686aefd0dSHong Zhang 311786aefd0dSHong Zhang PetscFunctionBegin; 311828b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 31199566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 3120ca15aa20SStefano Zampini *vals = v + col * a->lda; 31219566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 31223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 312386aefd0dSHong Zhang } 312486aefd0dSHong Zhang 3125d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A, PetscScalar **vals) 3126d71ae5a4SJacob Faibussowitsch { 312786aefd0dSHong Zhang PetscFunctionBegin; 3128742765d3SMatthew Knepley if (vals) *vals = NULL; /* user cannot accidentally use the array later */ 31293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 313086aefd0dSHong Zhang } 3131abc3b08eSStefano Zampini 3132a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 3133905e6a2fSBarry Smith MatGetRow_SeqDense, 3134905e6a2fSBarry Smith MatRestoreRow_SeqDense, 3135905e6a2fSBarry Smith MatMult_SeqDense, 313697304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 31377c922b88SBarry Smith MatMultTranspose_SeqDense, 31387c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 3139f4259b30SLisandro Dalcin NULL, 3140f4259b30SLisandro Dalcin NULL, 3141f4259b30SLisandro Dalcin NULL, 3142f4259b30SLisandro Dalcin /* 10*/ NULL, 3143905e6a2fSBarry Smith MatLUFactor_SeqDense, 3144905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 314541f059aeSBarry Smith MatSOR_SeqDense, 3146ec8511deSBarry Smith MatTranspose_SeqDense, 314797304618SKris Buschelman /* 15*/ MatGetInfo_SeqDense, 3148905e6a2fSBarry Smith MatEqual_SeqDense, 3149905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 3150905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 3151905e6a2fSBarry Smith MatNorm_SeqDense, 3152c0aa2d19SHong Zhang /* 20*/ MatAssemblyBegin_SeqDense, 3153c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 3154905e6a2fSBarry Smith MatSetOption_SeqDense, 3155905e6a2fSBarry Smith MatZeroEntries_SeqDense, 3156d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqDense, 3157f4259b30SLisandro Dalcin NULL, 3158f4259b30SLisandro Dalcin NULL, 3159f4259b30SLisandro Dalcin NULL, 3160f4259b30SLisandro Dalcin NULL, 31614994cf47SJed Brown /* 29*/ MatSetUp_SeqDense, 3162f4259b30SLisandro Dalcin NULL, 3163f4259b30SLisandro Dalcin NULL, 3164f4259b30SLisandro Dalcin NULL, 3165f4259b30SLisandro Dalcin NULL, 3166d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqDense, 3167f4259b30SLisandro Dalcin NULL, 3168f4259b30SLisandro Dalcin NULL, 3169f4259b30SLisandro Dalcin NULL, 3170f4259b30SLisandro Dalcin NULL, 3171d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqDense, 31727dae84e0SHong Zhang MatCreateSubMatrices_SeqDense, 3173f4259b30SLisandro Dalcin NULL, 31744b0e389bSBarry Smith MatGetValues_SeqDense, 3175a5ae1ecdSBarry Smith MatCopy_SeqDense, 3176d519adbfSMatthew Knepley /* 44*/ MatGetRowMax_SeqDense, 3177a5ae1ecdSBarry Smith MatScale_SeqDense, 31782f605a99SJose E. Roman MatShift_SeqDense, 3179f4259b30SLisandro Dalcin NULL, 31803f49a652SStefano Zampini MatZeroRowsColumns_SeqDense, 318173a71a0fSBarry Smith /* 49*/ MatSetRandom_SeqDense, 3182f4259b30SLisandro Dalcin NULL, 3183f4259b30SLisandro Dalcin NULL, 3184f4259b30SLisandro Dalcin NULL, 3185f4259b30SLisandro Dalcin NULL, 3186f4259b30SLisandro Dalcin /* 54*/ NULL, 3187f4259b30SLisandro Dalcin NULL, 3188f4259b30SLisandro Dalcin NULL, 3189f4259b30SLisandro Dalcin NULL, 3190f4259b30SLisandro Dalcin NULL, 3191023c16fcSToby Isaac /* 59*/ MatCreateSubMatrix_SeqDense, 3192e03a110bSBarry Smith MatDestroy_SeqDense, 3193e03a110bSBarry Smith MatView_SeqDense, 3194f4259b30SLisandro Dalcin NULL, 3195f4259b30SLisandro Dalcin NULL, 3196f4259b30SLisandro Dalcin /* 64*/ NULL, 3197f4259b30SLisandro Dalcin NULL, 3198f4259b30SLisandro Dalcin NULL, 3199f4259b30SLisandro Dalcin NULL, 3200f4259b30SLisandro Dalcin NULL, 3201d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqDense, 3202f4259b30SLisandro Dalcin NULL, 3203f4259b30SLisandro Dalcin NULL, 3204f4259b30SLisandro Dalcin NULL, 3205f4259b30SLisandro Dalcin NULL, 3206f4259b30SLisandro Dalcin /* 74*/ NULL, 3207f4259b30SLisandro Dalcin NULL, 3208f4259b30SLisandro Dalcin NULL, 3209f4259b30SLisandro Dalcin NULL, 3210f4259b30SLisandro Dalcin NULL, 3211f4259b30SLisandro Dalcin /* 79*/ NULL, 3212f4259b30SLisandro Dalcin NULL, 3213f4259b30SLisandro Dalcin NULL, 3214f4259b30SLisandro Dalcin NULL, 32155bba2384SShri Abhyankar /* 83*/ MatLoad_SeqDense, 3216637a0070SStefano Zampini MatIsSymmetric_SeqDense, 32171cbb95d3SBarry Smith MatIsHermitian_SeqDense, 3218f4259b30SLisandro Dalcin NULL, 3219f4259b30SLisandro Dalcin NULL, 3220f4259b30SLisandro Dalcin NULL, 3221f4259b30SLisandro Dalcin /* 89*/ NULL, 3222f4259b30SLisandro Dalcin NULL, 3223a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 3224f4259b30SLisandro Dalcin NULL, 3225f4259b30SLisandro Dalcin NULL, 3226f4259b30SLisandro Dalcin /* 94*/ NULL, 3227f4259b30SLisandro Dalcin NULL, 3228f4259b30SLisandro Dalcin NULL, 322969f65d41SStefano Zampini MatMatTransposeMultNumeric_SeqDense_SeqDense, 3230f4259b30SLisandro Dalcin NULL, 32314222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_SeqDense, 3232f4259b30SLisandro Dalcin NULL, 3233f4259b30SLisandro Dalcin NULL, 3234ba337c44SJed Brown MatConjugate_SeqDense, 3235f4259b30SLisandro Dalcin NULL, 3236f4259b30SLisandro Dalcin /*104*/ NULL, 3237ba337c44SJed Brown MatRealPart_SeqDense, 3238ba337c44SJed Brown MatImaginaryPart_SeqDense, 3239f4259b30SLisandro Dalcin NULL, 3240f4259b30SLisandro Dalcin NULL, 3241f4259b30SLisandro Dalcin /*109*/ NULL, 3242f4259b30SLisandro Dalcin NULL, 32438d0534beSBarry Smith MatGetRowMin_SeqDense, 3244aabbc4fbSShri Abhyankar MatGetColumnVector_SeqDense, 32453b49f96aSBarry Smith MatMissingDiagonal_SeqDense, 3246f4259b30SLisandro Dalcin /*114*/ NULL, 3247f4259b30SLisandro Dalcin NULL, 3248f4259b30SLisandro Dalcin NULL, 3249f4259b30SLisandro Dalcin NULL, 3250f4259b30SLisandro Dalcin NULL, 3251f4259b30SLisandro Dalcin /*119*/ NULL, 3252f4259b30SLisandro Dalcin NULL, 3253f4259b30SLisandro Dalcin NULL, 3254f4259b30SLisandro Dalcin NULL, 3255f4259b30SLisandro Dalcin NULL, 3256f4259b30SLisandro Dalcin /*124*/ NULL, 3257a873a8cdSSam Reynolds MatGetColumnReductions_SeqDense, 3258f4259b30SLisandro Dalcin NULL, 3259f4259b30SLisandro Dalcin NULL, 3260f4259b30SLisandro Dalcin NULL, 3261f4259b30SLisandro Dalcin /*129*/ NULL, 3262f4259b30SLisandro Dalcin NULL, 3263f4259b30SLisandro Dalcin NULL, 326475648e8dSHong Zhang MatTransposeMatMultNumeric_SeqDense_SeqDense, 3265f4259b30SLisandro Dalcin NULL, 3266f4259b30SLisandro Dalcin /*134*/ NULL, 3267f4259b30SLisandro Dalcin NULL, 3268f4259b30SLisandro Dalcin NULL, 3269f4259b30SLisandro Dalcin NULL, 3270f4259b30SLisandro Dalcin NULL, 3271f4259b30SLisandro Dalcin /*139*/ NULL, 3272f4259b30SLisandro Dalcin NULL, 3273f4259b30SLisandro Dalcin NULL, 3274f4259b30SLisandro Dalcin NULL, 3275f4259b30SLisandro Dalcin NULL, 32764222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_SeqDense, 3277f4259b30SLisandro Dalcin /*145*/ NULL, 3278f4259b30SLisandro Dalcin NULL, 327999a7f59eSMark Adams NULL, 328099a7f59eSMark Adams NULL, 32817fb60732SBarry Smith NULL, 3282dec0b466SHong Zhang /*150*/ NULL, 3283dec0b466SHong Zhang NULL}; 328490ace30eSBarry Smith 32854b828684SBarry Smith /*@C 328611a5261eSBarry Smith MatCreateSeqDense - Creates a `MATSEQDENSE` that 3287*2ef1f0ffSBarry Smith is stored in column major order (the usual Fortran manner). Many 3288d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 3289289bc588SBarry Smith 3290d083f849SBarry Smith Collective 3291db81eaa0SLois Curfman McInnes 329220563c6bSBarry Smith Input Parameters: 329311a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 32940c775827SLois Curfman McInnes . m - number of rows 329518f449edSLois Curfman McInnes . n - number of columns 3296*2ef1f0ffSBarry Smith - data - optional location of matrix data in column major order. Use `NULL` for PETSc 3297dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 329820563c6bSBarry Smith 329920563c6bSBarry Smith Output Parameter: 330044cd7ae7SLois Curfman McInnes . A - the matrix 330120563c6bSBarry Smith 3302*2ef1f0ffSBarry Smith Level: intermediate 3303*2ef1f0ffSBarry Smith 330411a5261eSBarry Smith Note: 330518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 330618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 3307*2ef1f0ffSBarry Smith set `data` = `NULL`. 330818f449edSLois Curfman McInnes 3309*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()` 331020563c6bSBarry Smith @*/ 3311d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscScalar *data, Mat *A) 3312d71ae5a4SJacob Faibussowitsch { 33133a40ed3dSBarry Smith PetscFunctionBegin; 33149566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 33159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 33169566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQDENSE)); 33179566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 33183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3319273d9f13SBarry Smith } 3320273d9f13SBarry Smith 3321273d9f13SBarry Smith /*@C 332211a5261eSBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements of a `MATSEQDENSE` matrix 3323273d9f13SBarry Smith 3324d083f849SBarry Smith Collective 3325273d9f13SBarry Smith 3326273d9f13SBarry Smith Input Parameters: 33271c4f3114SJed Brown + B - the matrix 3328*2ef1f0ffSBarry Smith - data - the array (or `NULL`) 3329*2ef1f0ffSBarry Smith 3330*2ef1f0ffSBarry Smith Level: intermediate 3331273d9f13SBarry Smith 333211a5261eSBarry Smith Note: 3333273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 3334273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 3335284134d9SBarry Smith need not call this routine. 3336273d9f13SBarry Smith 3337*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()`, `MatDenseSetLDA()` 3338273d9f13SBarry Smith @*/ 3339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation(Mat B, PetscScalar data[]) 3340d71ae5a4SJacob Faibussowitsch { 3341a23d5eceSKris Buschelman PetscFunctionBegin; 3342d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 3343cac4c232SBarry Smith PetscTryMethod(B, "MatSeqDenseSetPreallocation_C", (Mat, PetscScalar[]), (B, data)); 33443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3345a23d5eceSKris Buschelman } 3346a23d5eceSKris Buschelman 3347d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B, PetscScalar *data) 3348d71ae5a4SJacob Faibussowitsch { 3349ad16ce7aSStefano Zampini Mat_SeqDense *b = (Mat_SeqDense *)B->data; 3350273d9f13SBarry Smith 3351273d9f13SBarry Smith PetscFunctionBegin; 335228b400f6SJacob Faibussowitsch PetscCheck(!b->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3353273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 3354a868139aSShri Abhyankar 33559566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 33569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 335734ef9618SShri Abhyankar 3358ad16ce7aSStefano Zampini if (b->lda <= 0) b->lda = B->rmap->n; 335986d161a7SShri Abhyankar 33609e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 33619566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 33629566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((size_t)b->lda * B->cmap->n, &b->v)); 33632205254eSKarl Rupp 33649e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 3365273d9f13SBarry Smith } else { /* user-allocated storage */ 33669566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 3367273d9f13SBarry Smith b->v = data; 3368273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 3369273d9f13SBarry Smith } 33700450473dSBarry Smith B->assembled = PETSC_TRUE; 33713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3372273d9f13SBarry Smith } 3373273d9f13SBarry Smith 337465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 3375d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 3376d71ae5a4SJacob Faibussowitsch { 3377d77f618aSHong Zhang Mat mat_elemental; 33781683a169SBarry Smith const PetscScalar *array; 33791683a169SBarry Smith PetscScalar *v_colwise; 3380d77f618aSHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, i, j, k, *rows, *cols; 3381d77f618aSHong Zhang 33828baccfbdSHong Zhang PetscFunctionBegin; 33839566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(M * N, &v_colwise, M, &rows, N, &cols)); 33849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &array)); 3385d77f618aSHong Zhang /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */ 3386d77f618aSHong Zhang k = 0; 3387d77f618aSHong Zhang for (j = 0; j < N; j++) { 3388d77f618aSHong Zhang cols[j] = j; 3389ad540459SPierre Jolivet for (i = 0; i < M; i++) v_colwise[j * M + i] = array[k++]; 3390d77f618aSHong Zhang } 3391ad540459SPierre Jolivet for (i = 0; i < M; i++) rows[i] = i; 33929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &array)); 3393d77f618aSHong Zhang 33949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 33959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 33969566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 33979566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 3398d77f618aSHong Zhang 3399d77f618aSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 34009566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, M, rows, N, cols, v_colwise, ADD_VALUES)); 34019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 34029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 34039566063dSJacob Faibussowitsch PetscCall(PetscFree3(v_colwise, rows, cols)); 3404d77f618aSHong Zhang 3405511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 34069566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 3407d77f618aSHong Zhang } else { 3408d77f618aSHong Zhang *newmat = mat_elemental; 3409d77f618aSHong Zhang } 34103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34118baccfbdSHong Zhang } 341265b80a83SHong Zhang #endif 34138baccfbdSHong Zhang 3414d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA_SeqDense(Mat B, PetscInt lda) 3415d71ae5a4SJacob Faibussowitsch { 34161b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense *)B->data; 34177422da62SJose E. Roman PetscBool data; 341821a2c019SBarry Smith 34191b807ce4Svictorle PetscFunctionBegin; 34207422da62SJose E. Roman data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE); 3421aed4548fSBarry Smith PetscCheck(b->user_alloc || !data || b->lda == lda, PETSC_COMM_SELF, PETSC_ERR_ORDER, "LDA cannot be changed after allocation of internal storage"); 342208401ef6SPierre Jolivet PetscCheck(lda >= B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "LDA %" PetscInt_FMT " must be at least matrix dimension %" PetscInt_FMT, lda, B->rmap->n); 34231b807ce4Svictorle b->lda = lda; 34243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34251b807ce4Svictorle } 34261b807ce4Svictorle 3427d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3428d71ae5a4SJacob Faibussowitsch { 3429d528f656SJakub Kruzik PetscFunctionBegin; 34309566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIDense(comm, inmat, n, scall, outmat)); 34313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3432d528f656SJakub Kruzik } 3433d528f656SJakub Kruzik 3434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A, PetscInt col, Vec *v) 3435d71ae5a4SJacob Faibussowitsch { 34366947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34376947451fSStefano Zampini 34386947451fSStefano Zampini PetscFunctionBegin; 343928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 344028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 34414dfa11a4SJacob Faibussowitsch if (!a->cvec) { PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, &a->cvec)); } 34426947451fSStefano Zampini a->vecinuse = col + 1; 34439566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, (PetscScalar **)&a->ptrinuse)); 34449566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)a->lda)); 34456947451fSStefano Zampini *v = a->cvec; 34463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34476947451fSStefano Zampini } 34486947451fSStefano Zampini 3449d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A, PetscInt col, Vec *v) 3450d71ae5a4SJacob Faibussowitsch { 34516947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34526947451fSStefano Zampini 34536947451fSStefano Zampini PetscFunctionBegin; 345428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 345528b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 34566947451fSStefano Zampini a->vecinuse = 0; 34579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, (PetscScalar **)&a->ptrinuse)); 34589566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 345975f6d85dSStefano Zampini if (v) *v = NULL; 34603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34616947451fSStefano Zampini } 34626947451fSStefano Zampini 3463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v) 3464d71ae5a4SJacob Faibussowitsch { 34656947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34666947451fSStefano Zampini 34676947451fSStefano Zampini PetscFunctionBegin; 346828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 346928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 34704dfa11a4SJacob Faibussowitsch if (!a->cvec) { PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, &a->cvec)); } 34716947451fSStefano Zampini a->vecinuse = col + 1; 34729566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &a->ptrinuse)); 34739566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)a->lda)); 34749566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 34756947451fSStefano Zampini *v = a->cvec; 34763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34776947451fSStefano Zampini } 34786947451fSStefano Zampini 3479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v) 3480d71ae5a4SJacob Faibussowitsch { 34816947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34826947451fSStefano Zampini 34836947451fSStefano Zampini PetscFunctionBegin; 348428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 348528b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 34866947451fSStefano Zampini a->vecinuse = 0; 34879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &a->ptrinuse)); 34889566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 34899566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 349075f6d85dSStefano Zampini if (v) *v = NULL; 34913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34926947451fSStefano Zampini } 34936947451fSStefano Zampini 3494d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v) 3495d71ae5a4SJacob Faibussowitsch { 34966947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34976947451fSStefano Zampini 34986947451fSStefano Zampini PetscFunctionBegin; 349928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 350028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3501aa624791SPierre Jolivet if (!a->cvec) PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, &a->cvec)); 35026947451fSStefano Zampini a->vecinuse = col + 1; 35039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A, (PetscScalar **)&a->ptrinuse)); 35049566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)a->lda)); 35056947451fSStefano Zampini *v = a->cvec; 35063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35076947451fSStefano Zampini } 35086947451fSStefano Zampini 3509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v) 3510d71ae5a4SJacob Faibussowitsch { 35116947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35126947451fSStefano Zampini 35136947451fSStefano Zampini PetscFunctionBegin; 351428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 351528b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 35166947451fSStefano Zampini a->vecinuse = 0; 35179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A, (PetscScalar **)&a->ptrinuse)); 35189566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 351975f6d85dSStefano Zampini if (v) *v = NULL; 35203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35216947451fSStefano Zampini } 35226947451fSStefano Zampini 3523d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 3524d71ae5a4SJacob Faibussowitsch { 35255ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35265ea7661aSPierre Jolivet 35275ea7661aSPierre Jolivet PetscFunctionBegin; 352828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 352928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3530a2748737SPierre Jolivet if (a->cmat && (cend - cbegin != a->cmat->cmap->N || rend - rbegin != a->cmat->rmap->N)) PetscCall(MatDestroy(&a->cmat)); 35315ea7661aSPierre Jolivet if (!a->cmat) { 3532a2748737SPierre Jolivet PetscCall(MatCreateDense(PetscObjectComm((PetscObject)A), rend - rbegin, PETSC_DECIDE, rend - rbegin, cend - cbegin, a->v + rbegin + (size_t)cbegin * a->lda, &a->cmat)); 35335ea7661aSPierre Jolivet } else { 3534a2748737SPierre Jolivet PetscCall(MatDensePlaceArray(a->cmat, a->v + rbegin + (size_t)cbegin * a->lda)); 35355ea7661aSPierre Jolivet } 35369566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->cmat, a->lda)); 35375ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 35385ea7661aSPierre Jolivet *v = a->cmat; 353947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 354075f6d85dSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 354175f6d85dSStefano Zampini #endif 35423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35435ea7661aSPierre Jolivet } 35445ea7661aSPierre Jolivet 3545d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A, Mat *v) 3546d71ae5a4SJacob Faibussowitsch { 35475ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35485ea7661aSPierre Jolivet 35495ea7661aSPierre Jolivet PetscFunctionBegin; 355028b400f6SJacob Faibussowitsch PetscCheck(a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 355128b400f6SJacob Faibussowitsch PetscCheck(a->cmat, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column matrix"); 355208401ef6SPierre Jolivet PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 35535ea7661aSPierre Jolivet a->matinuse = 0; 35549566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->cmat)); 3555742765d3SMatthew Knepley if (v) *v = NULL; 355647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 35573faff063SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 35583faff063SStefano Zampini #endif 35593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35605ea7661aSPierre Jolivet } 35615ea7661aSPierre Jolivet 35620bad9183SKris Buschelman /*MC 3563fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 35640bad9183SKris Buschelman 3565*2ef1f0ffSBarry Smith Options Database Key: 356611a5261eSBarry Smith . -mat_type seqdense - sets the matrix type to `MATSEQDENSE` during a call to `MatSetFromOptions()` 35670bad9183SKris Buschelman 35680bad9183SKris Buschelman Level: beginner 35690bad9183SKris Buschelman 3570*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATSEQDENSE`, `MatCreateSeqDense()` 35710bad9183SKris Buschelman M*/ 3572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreate_SeqDense(Mat B) 3573d71ae5a4SJacob Faibussowitsch { 3574273d9f13SBarry Smith Mat_SeqDense *b; 35757c334f02SBarry Smith PetscMPIInt size; 3576273d9f13SBarry Smith 3577273d9f13SBarry Smith PetscFunctionBegin; 35789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 357908401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1"); 358055659b69SBarry Smith 35814dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 35829566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 358344cd7ae7SLois Curfman McInnes B->data = (void *)b; 358418f449edSLois Curfman McInnes 3585273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 35864e220ebcSLois Curfman McInnes 35879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatQRFactor_C", MatQRFactor_SeqDense)); 35889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetLDA_C", MatDenseGetLDA_SeqDense)); 35899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseSetLDA_C", MatDenseSetLDA_SeqDense)); 35909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArray_C", MatDenseGetArray_SeqDense)); 35919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArray_C", MatDenseRestoreArray_SeqDense)); 35929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDensePlaceArray_C", MatDensePlaceArray_SeqDense)); 35939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseResetArray_C", MatDenseResetArray_SeqDense)); 35949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseReplaceArray_C", MatDenseReplaceArray_SeqDense)); 35959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayRead_C", MatDenseGetArray_SeqDense)); 35969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayRead_C", MatDenseRestoreArray_SeqDense)); 35979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayWrite_C", MatDenseGetArray_SeqDense)); 35989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArray_SeqDense)); 35999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqaij_C", MatConvert_SeqDense_SeqAIJ)); 36008baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 36019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_elemental_C", MatConvert_SeqDense_Elemental)); 36028baccfbdSHong Zhang #endif 3603d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 36049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 3605d24d4204SJose E. Roman #endif 36062bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 36079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensecuda_C", MatConvert_SeqDense_SeqDenseCUDA)); 36089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", MatProductSetFromOptions_SeqDense)); 36099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdense_C", MatProductSetFromOptions_SeqDense)); 36109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensecuda_C", MatProductSetFromOptions_SeqDense)); 36112bf066beSStefano Zampini #endif 361247d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 361347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensehip_C", MatConvert_SeqDense_SeqDenseHIP)); 361447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", MatProductSetFromOptions_SeqDense)); 361547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdense_C", MatProductSetFromOptions_SeqDense)); 361647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensehip_C", MatProductSetFromOptions_SeqDense)); 361747d993e7Ssuyashtn #endif 36189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqDenseSetPreallocation_C", MatSeqDenseSetPreallocation_SeqDense)); 36199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqaij_seqdense_C", MatProductSetFromOptions_SeqAIJ_SeqDense)); 36209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdense_C", MatProductSetFromOptions_SeqDense)); 36219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 36229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqsbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 362396e6d5c4SRichard Tran Mills 36249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumn_C", MatDenseGetColumn_SeqDense)); 36259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_SeqDense)); 36269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_SeqDense)); 36279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_SeqDense)); 36289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_SeqDense)); 36299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_SeqDense)); 36309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_SeqDense)); 36319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_SeqDense)); 36329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_SeqDense)); 36339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_SeqDense)); 36349566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQDENSE)); 36353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3636289bc588SBarry Smith } 363786aefd0dSHong Zhang 363886aefd0dSHong Zhang /*@C 363911a5261eSBarry Smith MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call `MatDenseRestoreColumn()` to avoid memory bleeding. 364086aefd0dSHong Zhang 364186aefd0dSHong Zhang Not Collective 364286aefd0dSHong Zhang 36435ea7661aSPierre Jolivet Input Parameters: 364411a5261eSBarry Smith + mat - a `MATSEQDENSE` or `MATMPIDENSE` matrix 364586aefd0dSHong Zhang - col - column index 364686aefd0dSHong Zhang 364786aefd0dSHong Zhang Output Parameter: 364886aefd0dSHong Zhang . vals - pointer to the data 364986aefd0dSHong Zhang 365086aefd0dSHong Zhang Level: intermediate 365186aefd0dSHong Zhang 365211a5261eSBarry Smith Note: 365311a5261eSBarry Smith Use `MatDenseGetColumnVec()` to get access to a column of a `MATDENSE` treated as a `Vec` 365411a5261eSBarry Smith 3655*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreColumn()`, `MatDenseGetColumnVec()` 365686aefd0dSHong Zhang @*/ 3657d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumn(Mat A, PetscInt col, PetscScalar **vals) 3658d71ae5a4SJacob Faibussowitsch { 365986aefd0dSHong Zhang PetscFunctionBegin; 3660d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3661d5ea218eSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 3662d5ea218eSStefano Zampini PetscValidPointer(vals, 3); 3663cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumn_C", (Mat, PetscInt, PetscScalar **), (A, col, vals)); 36643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 366586aefd0dSHong Zhang } 366686aefd0dSHong Zhang 366786aefd0dSHong Zhang /*@C 366811a5261eSBarry Smith MatDenseRestoreColumn - returns access to a column of a `MATDENSE` matrix which is returned by `MatDenseGetColumn()`. 366986aefd0dSHong Zhang 367086aefd0dSHong Zhang Not Collective 367186aefd0dSHong Zhang 3672742765d3SMatthew Knepley Input Parameters: 367311a5261eSBarry Smith + mat - a `MATSEQDENSE` or `MATMPIDENSE` matrix 3674*2ef1f0ffSBarry Smith - vals - pointer to the data (may be `NULL`) 367586aefd0dSHong Zhang 367686aefd0dSHong Zhang Level: intermediate 367786aefd0dSHong Zhang 3678*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MatDenseGetColumn()` 367986aefd0dSHong Zhang @*/ 3680d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumn(Mat A, PetscScalar **vals) 3681d71ae5a4SJacob Faibussowitsch { 368286aefd0dSHong Zhang PetscFunctionBegin; 3683d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3684d5ea218eSStefano Zampini PetscValidPointer(vals, 2); 3685cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumn_C", (Mat, PetscScalar **), (A, vals)); 36863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368786aefd0dSHong Zhang } 36886947451fSStefano Zampini 36890f74d2c1SSatish Balay /*@ 369011a5261eSBarry Smith MatDenseGetColumnVec - Gives read-write access to a column of a `MATDENSE` matrix, represented as a `Vec`. 36916947451fSStefano Zampini 36926947451fSStefano Zampini Collective 36936947451fSStefano Zampini 36945ea7661aSPierre Jolivet Input Parameters: 369511a5261eSBarry Smith + mat - the `Mat` object 36966947451fSStefano Zampini - col - the column index 36976947451fSStefano Zampini 36986947451fSStefano Zampini Output Parameter: 36996947451fSStefano Zampini . v - the vector 37006947451fSStefano Zampini 3701*2ef1f0ffSBarry Smith Level: intermediate 3702*2ef1f0ffSBarry Smith 37036947451fSStefano Zampini Notes: 370411a5261eSBarry Smith The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVec()` when the vector is no longer needed. 370511a5261eSBarry Smith 370611a5261eSBarry Smith Use `MatDenseGetColumnVecRead()` to obtain read-only access or `MatDenseGetColumnVecWrite()` for write-only access. 37076947451fSStefano Zampini 3708*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`, `MatDenseGetColumn()` 37096947451fSStefano Zampini @*/ 3710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec(Mat A, PetscInt col, Vec *v) 3711d71ae5a4SJacob Faibussowitsch { 37126947451fSStefano Zampini PetscFunctionBegin; 37136947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37146947451fSStefano Zampini PetscValidType(A, 1); 37156947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 37166947451fSStefano Zampini PetscValidPointer(v, 3); 371728b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37182cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3719cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v)); 37203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37216947451fSStefano Zampini } 37226947451fSStefano Zampini 37230f74d2c1SSatish Balay /*@ 37246947451fSStefano Zampini MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec(). 37256947451fSStefano Zampini 37266947451fSStefano Zampini Collective 37276947451fSStefano Zampini 37285ea7661aSPierre Jolivet Input Parameters: 37296947451fSStefano Zampini + mat - the Mat object 37306947451fSStefano Zampini . col - the column index 3731*2ef1f0ffSBarry Smith - v - the Vec object (may be `NULL`) 37326947451fSStefano Zampini 37336947451fSStefano Zampini Level: intermediate 37346947451fSStefano Zampini 3735*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 37366947451fSStefano Zampini @*/ 3737d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec(Mat A, PetscInt col, Vec *v) 3738d71ae5a4SJacob Faibussowitsch { 37396947451fSStefano Zampini PetscFunctionBegin; 37406947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37416947451fSStefano Zampini PetscValidType(A, 1); 37426947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 374308401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37442cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3745cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v)); 37463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37476947451fSStefano Zampini } 37486947451fSStefano Zampini 37490f74d2c1SSatish Balay /*@ 37506947451fSStefano Zampini MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec. 37516947451fSStefano Zampini 37526947451fSStefano Zampini Collective 37536947451fSStefano Zampini 37545ea7661aSPierre Jolivet Input Parameters: 3755*2ef1f0ffSBarry Smith + mat - the `Mat` object 37566947451fSStefano Zampini - col - the column index 37576947451fSStefano Zampini 37586947451fSStefano Zampini Output Parameter: 37596947451fSStefano Zampini . v - the vector 37606947451fSStefano Zampini 3761*2ef1f0ffSBarry Smith Level: intermediate 3762*2ef1f0ffSBarry Smith 37636947451fSStefano Zampini Notes: 37646947451fSStefano Zampini The vector is owned by PETSc and users cannot modify it. 376511a5261eSBarry Smith 3766*2ef1f0ffSBarry Smith Users need to call `MatDenseRestoreColumnVecRead()` when the vector is no longer needed. 376711a5261eSBarry Smith 3768*2ef1f0ffSBarry Smith Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecWrite()` for write-only access. 37696947451fSStefano Zampini 3770*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 37716947451fSStefano Zampini @*/ 3772d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead(Mat A, PetscInt col, Vec *v) 3773d71ae5a4SJacob Faibussowitsch { 37746947451fSStefano Zampini PetscFunctionBegin; 37756947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37766947451fSStefano Zampini PetscValidType(A, 1); 37776947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 37786947451fSStefano Zampini PetscValidPointer(v, 3); 377928b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37802cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3781cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v)); 37823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37836947451fSStefano Zampini } 37846947451fSStefano Zampini 37850f74d2c1SSatish Balay /*@ 37866947451fSStefano Zampini MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead(). 37876947451fSStefano Zampini 37886947451fSStefano Zampini Collective 37896947451fSStefano Zampini 37905ea7661aSPierre Jolivet Input Parameters: 3791*2ef1f0ffSBarry Smith + mat - the `Mat` object 37926947451fSStefano Zampini . col - the column index 3793*2ef1f0ffSBarry Smith - v - the Vec object (may be `NULL`) 37946947451fSStefano Zampini 37956947451fSStefano Zampini Level: intermediate 37966947451fSStefano Zampini 3797*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecWrite()` 37986947451fSStefano Zampini @*/ 3799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead(Mat A, PetscInt col, Vec *v) 3800d71ae5a4SJacob Faibussowitsch { 38016947451fSStefano Zampini PetscFunctionBegin; 38026947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38036947451fSStefano Zampini PetscValidType(A, 1); 38046947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 380508401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 38062cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3807cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v)); 38083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38096947451fSStefano Zampini } 38106947451fSStefano Zampini 38110f74d2c1SSatish Balay /*@ 38126947451fSStefano Zampini MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec. 38136947451fSStefano Zampini 38146947451fSStefano Zampini Collective 38156947451fSStefano Zampini 38165ea7661aSPierre Jolivet Input Parameters: 3817*2ef1f0ffSBarry Smith + mat - the `Mat` object 38186947451fSStefano Zampini - col - the column index 38196947451fSStefano Zampini 38206947451fSStefano Zampini Output Parameter: 38216947451fSStefano Zampini . v - the vector 38226947451fSStefano Zampini 38236947451fSStefano Zampini Level: intermediate 38246947451fSStefano Zampini 3825*2ef1f0ffSBarry Smith Notes: 3826*2ef1f0ffSBarry Smith The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVecWrite()` when the vector is no longer needed. 3827*2ef1f0ffSBarry Smith 3828*2ef1f0ffSBarry Smith Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecRead()` for read-only access. 3829*2ef1f0ffSBarry Smith 3830*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 38316947451fSStefano Zampini @*/ 3832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite(Mat A, PetscInt col, Vec *v) 3833d71ae5a4SJacob Faibussowitsch { 38346947451fSStefano Zampini PetscFunctionBegin; 38356947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38366947451fSStefano Zampini PetscValidType(A, 1); 38376947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 38386947451fSStefano Zampini PetscValidPointer(v, 3); 383928b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3840aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3841cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v)); 38423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38436947451fSStefano Zampini } 38446947451fSStefano Zampini 38450f74d2c1SSatish Balay /*@ 38466947451fSStefano Zampini MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite(). 38476947451fSStefano Zampini 38486947451fSStefano Zampini Collective 38496947451fSStefano Zampini 38505ea7661aSPierre Jolivet Input Parameters: 3851*2ef1f0ffSBarry Smith + mat - the `Mat` object 38526947451fSStefano Zampini . col - the column index 3853*2ef1f0ffSBarry Smith - v - the `Vec` object (may be `NULL`) 38546947451fSStefano Zampini 38556947451fSStefano Zampini Level: intermediate 38566947451fSStefano Zampini 3857*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()` 38586947451fSStefano Zampini @*/ 3859d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A, PetscInt col, Vec *v) 3860d71ae5a4SJacob Faibussowitsch { 38616947451fSStefano Zampini PetscFunctionBegin; 38626947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38636947451fSStefano Zampini PetscValidType(A, 1); 38646947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 386508401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3866aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3867cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v)); 38683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38696947451fSStefano Zampini } 38705ea7661aSPierre Jolivet 38710f74d2c1SSatish Balay /*@ 3872a2748737SPierre Jolivet MatDenseGetSubMatrix - Gives access to a block of rows and columns of a dense matrix, represented as a Mat. 38735ea7661aSPierre Jolivet 38745ea7661aSPierre Jolivet Collective 38755ea7661aSPierre Jolivet 38765ea7661aSPierre Jolivet Input Parameters: 38775ea7661aSPierre Jolivet + mat - the Mat object 3878*2ef1f0ffSBarry Smith . rbegin - the first global row index in the block (if `PETSC_DECIDE`, is 0) 3879*2ef1f0ffSBarry Smith . rend - the global row index past the last one in the block (if `PETSC_DECIDE`, is `M`) 3880*2ef1f0ffSBarry Smith . cbegin - the first global column index in the block (if `PETSC_DECIDE`, is 0) 3881*2ef1f0ffSBarry Smith - cend - the global column index past the last one in the block (if `PETSC_DECIDE`, is `N`) 38825ea7661aSPierre Jolivet 38835ea7661aSPierre Jolivet Output Parameter: 38845ea7661aSPierre Jolivet . v - the matrix 38855ea7661aSPierre Jolivet 38865ea7661aSPierre Jolivet Level: intermediate 38875ea7661aSPierre Jolivet 3888*2ef1f0ffSBarry Smith Notes: 3889*2ef1f0ffSBarry Smith The matrix is owned by PETSc. Users need to call `MatDenseRestoreSubMatrix()` when the matrix is no longer needed. 3890*2ef1f0ffSBarry Smith 3891*2ef1f0ffSBarry Smith The output matrix is not redistributed by PETSc, so depending on the values of `rbegin` and `rend`, some processes may have no local rows. 3892*2ef1f0ffSBarry Smith 3893*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreSubMatrix()` 38945ea7661aSPierre Jolivet @*/ 3895d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 3896d71ae5a4SJacob Faibussowitsch { 38975ea7661aSPierre Jolivet PetscFunctionBegin; 38985ea7661aSPierre Jolivet PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38995ea7661aSPierre Jolivet PetscValidType(A, 1); 3900a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, rbegin, 2); 3901a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, rend, 3); 3902a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, cbegin, 4); 3903a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, cend, 5); 3904a2748737SPierre Jolivet PetscValidPointer(v, 6); 3905a2748737SPierre Jolivet if (rbegin == PETSC_DECIDE) rbegin = 0; 3906a2748737SPierre Jolivet if (rend == PETSC_DECIDE) rend = A->rmap->N; 3907a2748737SPierre Jolivet if (cbegin == PETSC_DECIDE) cbegin = 0; 3908a2748737SPierre Jolivet if (cend == PETSC_DECIDE) cend = A->cmap->N; 390928b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3910a2748737SPierre Jolivet PetscCheck(rbegin >= 0 && rbegin <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", rbegin, A->rmap->N); 3911a2748737SPierre Jolivet PetscCheck(rend >= rbegin && rend <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", rend, rbegin, A->rmap->N); 3912a2748737SPierre Jolivet PetscCheck(cbegin >= 0 && cbegin <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", cbegin, A->cmap->N); 3913a2748737SPierre Jolivet PetscCheck(cend >= cbegin && cend <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", cend, cbegin, A->cmap->N); 3914a2748737SPierre Jolivet PetscUseMethod(A, "MatDenseGetSubMatrix_C", (Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *), (A, rbegin, rend, cbegin, cend, v)); 39153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39165ea7661aSPierre Jolivet } 39175ea7661aSPierre Jolivet 39180f74d2c1SSatish Balay /*@ 39195ea7661aSPierre Jolivet MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix(). 39205ea7661aSPierre Jolivet 39215ea7661aSPierre Jolivet Collective 39225ea7661aSPierre Jolivet 39235ea7661aSPierre Jolivet Input Parameters: 3924*2ef1f0ffSBarry Smith + mat - the `Mat` object 3925*2ef1f0ffSBarry Smith - v - the `Mat` object (may be `NULL`) 39265ea7661aSPierre Jolivet 39275ea7661aSPierre Jolivet Level: intermediate 39285ea7661aSPierre Jolivet 3929*2ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseGetSubMatrix()` 39305ea7661aSPierre Jolivet @*/ 3931d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix(Mat A, Mat *v) 3932d71ae5a4SJacob Faibussowitsch { 39335ea7661aSPierre Jolivet PetscFunctionBegin; 39345ea7661aSPierre Jolivet PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 39355ea7661aSPierre Jolivet PetscValidType(A, 1); 39365ea7661aSPierre Jolivet PetscValidPointer(v, 2); 3937cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreSubMatrix_C", (Mat, Mat *), (A, v)); 39383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39395ea7661aSPierre Jolivet } 39408a9c020eSBarry Smith 39418a9c020eSBarry Smith #include <petscblaslapack.h> 39428a9c020eSBarry Smith #include <petsc/private/kernels/blockinvert.h> 39438a9c020eSBarry Smith 3944d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvert(Mat A) 3945d71ae5a4SJacob Faibussowitsch { 39468a9c020eSBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 39478a9c020eSBarry Smith PetscInt bs = A->rmap->n; 39488a9c020eSBarry Smith MatScalar *values = a->v; 39498a9c020eSBarry Smith const PetscReal shift = 0.0; 39508a9c020eSBarry Smith PetscBool allowzeropivot = PetscNot(A->erroriffailure), zeropivotdetected = PETSC_FALSE; 39518a9c020eSBarry Smith 39528a9c020eSBarry Smith PetscFunctionBegin; 39538a9c020eSBarry Smith /* factor and invert each block */ 39548a9c020eSBarry Smith switch (bs) { 3955d71ae5a4SJacob Faibussowitsch case 1: 3956d71ae5a4SJacob Faibussowitsch values[0] = (PetscScalar)1.0 / (values[0] + shift); 3957d71ae5a4SJacob Faibussowitsch break; 39588a9c020eSBarry Smith case 2: 39598a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_2(values, shift, allowzeropivot, &zeropivotdetected)); 39608a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39618a9c020eSBarry Smith break; 39628a9c020eSBarry Smith case 3: 39638a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_3(values, shift, allowzeropivot, &zeropivotdetected)); 39648a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39658a9c020eSBarry Smith break; 39668a9c020eSBarry Smith case 4: 39678a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_4(values, shift, allowzeropivot, &zeropivotdetected)); 39688a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39698a9c020eSBarry Smith break; 39709371c9d4SSatish Balay case 5: { 39718a9c020eSBarry Smith PetscScalar work[25]; 39728a9c020eSBarry Smith PetscInt ipvt[5]; 39738a9c020eSBarry Smith 39748a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_5(values, ipvt, work, shift, allowzeropivot, &zeropivotdetected)); 39758a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39769371c9d4SSatish Balay } break; 39778a9c020eSBarry Smith case 6: 39788a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_6(values, shift, allowzeropivot, &zeropivotdetected)); 39798a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39808a9c020eSBarry Smith break; 39818a9c020eSBarry Smith case 7: 39828a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_7(values, shift, allowzeropivot, &zeropivotdetected)); 39838a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39848a9c020eSBarry Smith break; 39859371c9d4SSatish Balay default: { 39868a9c020eSBarry Smith PetscInt *v_pivots, *IJ, j; 39878a9c020eSBarry Smith PetscScalar *v_work; 39888a9c020eSBarry Smith 39898a9c020eSBarry Smith PetscCall(PetscMalloc3(bs, &v_work, bs, &v_pivots, bs, &IJ)); 3990ad540459SPierre Jolivet for (j = 0; j < bs; j++) IJ[j] = j; 39918a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A(bs, values, v_pivots, v_work, allowzeropivot, &zeropivotdetected)); 39928a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39938a9c020eSBarry Smith PetscCall(PetscFree3(v_work, v_pivots, IJ)); 39948a9c020eSBarry Smith } 39958a9c020eSBarry Smith } 39963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39978a9c020eSBarry Smith } 3998