xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 3741e84b978e6a42b132b5abc02428038be735f4)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
16ca15aa20SStefano Zampini   PetscErrorCode ierr;
178c178816SStefano Zampini 
188c178816SStefano Zampini   PetscFunctionBegin;
198c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
20ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
218c178816SStefano Zampini   if (!hermitian) {
228c178816SStefano Zampini     for (k=0;k<n;k++) {
238c178816SStefano Zampini       for (j=k;j<n;j++) {
24ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
258c178816SStefano Zampini       }
268c178816SStefano Zampini     }
278c178816SStefano Zampini   } else {
288c178816SStefano Zampini     for (k=0;k<n;k++) {
298c178816SStefano Zampini       for (j=k;j<n;j++) {
30ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
318c178816SStefano Zampini       }
328c178816SStefano Zampini     }
338c178816SStefano Zampini   }
34ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
358c178816SStefano Zampini   PetscFunctionReturn(0);
368c178816SStefano Zampini }
378c178816SStefano Zampini 
3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
398c178816SStefano Zampini {
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
5400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
558c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
5600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
57ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
588c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
598c178816SStefano Zampini     if (A->spd) {
6000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
618c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
6200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
638c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
658c178816SStefano Zampini     } else if (A->hermitian) {
668c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
678c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
6800121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
698c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7000121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
728c178816SStefano Zampini #endif
738c178816SStefano Zampini     } else { /* symmetric case */
748c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
758c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
7600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
778c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
798c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
808c178816SStefano Zampini     }
818c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
82ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
838c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
848c178816SStefano Zampini 
858c178816SStefano Zampini   A->ops->solve             = NULL;
868c178816SStefano Zampini   A->ops->matsolve          = NULL;
878c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
888c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
898c178816SStefano Zampini   A->ops->solveadd          = NULL;
908c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
918c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
928c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
938c178816SStefano Zampini   PetscFunctionReturn(0);
948c178816SStefano Zampini }
958c178816SStefano Zampini 
963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
973f49a652SStefano Zampini {
983f49a652SStefano Zampini   PetscErrorCode    ierr;
993f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1003f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
101ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
1023f49a652SStefano Zampini   const PetscScalar *xx;
1033f49a652SStefano Zampini 
1043f49a652SStefano Zampini   PetscFunctionBegin;
10576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1063f49a652SStefano Zampini     for (i=0; i<N; i++) {
1073f49a652SStefano Zampini       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1083f49a652SStefano Zampini       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1093f49a652SStefano Zampini       if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1103f49a652SStefano Zampini     }
11176bd3646SJed Brown   }
112ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1133f49a652SStefano Zampini 
1143f49a652SStefano Zampini   /* fix right hand side if needed */
1153f49a652SStefano Zampini   if (x && b) {
1166c4d906cSStefano Zampini     Vec xt;
1176c4d906cSStefano Zampini 
1186c4d906cSStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1196c4d906cSStefano Zampini     ierr = VecDuplicate(x,&xt);CHKERRQ(ierr);
1206c4d906cSStefano Zampini     ierr = VecCopy(x,xt);CHKERRQ(ierr);
1216c4d906cSStefano Zampini     ierr = VecScale(xt,-1.0);CHKERRQ(ierr);
1226c4d906cSStefano Zampini     ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr);
1236c4d906cSStefano Zampini     ierr = VecDestroy(&xt);CHKERRQ(ierr);
1243f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1253f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1263f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1273f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1283f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini 
131ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1323f49a652SStefano Zampini   for (i=0; i<N; i++) {
133ca15aa20SStefano Zampini     slot = v + rows[i]*m;
134580bdb30SBarry Smith     ierr = PetscArrayzero(slot,r);CHKERRQ(ierr);
1353f49a652SStefano Zampini   }
1363f49a652SStefano Zampini   for (i=0; i<N; i++) {
137ca15aa20SStefano Zampini     slot = v + rows[i];
1383f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1393f49a652SStefano Zampini   }
1403f49a652SStefano Zampini   if (diag != 0.0) {
1413f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1423f49a652SStefano Zampini     for (i=0; i<N; i++) {
143ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1443f49a652SStefano Zampini       *slot = diag;
1453f49a652SStefano Zampini     }
1463f49a652SStefano Zampini   }
147ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
1483f49a652SStefano Zampini   PetscFunctionReturn(0);
1493f49a652SStefano Zampini }
1503f49a652SStefano Zampini 
151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
152abc3b08eSStefano Zampini {
153abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
154abc3b08eSStefano Zampini   PetscErrorCode ierr;
155abc3b08eSStefano Zampini 
156abc3b08eSStefano Zampini   PetscFunctionBegin;
157ca15aa20SStefano Zampini   if (c->ptapwork) {
158ca15aa20SStefano Zampini     ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr);
159ca15aa20SStefano Zampini     ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr);
1604222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
161abc3b08eSStefano Zampini   PetscFunctionReturn(0);
162abc3b08eSStefano Zampini }
163abc3b08eSStefano Zampini 
1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
165abc3b08eSStefano Zampini {
166abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1677a3c3d58SStefano Zampini   PetscBool      cisdense;
168abc3b08eSStefano Zampini   PetscErrorCode ierr;
169abc3b08eSStefano Zampini 
170abc3b08eSStefano Zampini   PetscFunctionBegin;
1714222ddf1SHong Zhang   ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr);
1727a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
1737a3c3d58SStefano Zampini   if (!cisdense) {
1747a3c3d58SStefano Zampini     PetscBool flg;
1757a3c3d58SStefano Zampini 
1767a3c3d58SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
1774222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
1787a3c3d58SStefano Zampini   }
1797a3c3d58SStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
1804222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
181ca15aa20SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr);
182ca15aa20SStefano Zampini   ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr);
1837a3c3d58SStefano Zampini   ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr);
1847a3c3d58SStefano Zampini   ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr);
185abc3b08eSStefano Zampini   PetscFunctionReturn(0);
186abc3b08eSStefano Zampini }
187abc3b08eSStefano Zampini 
188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
189b49cda9fSStefano Zampini {
190a13144ffSStefano Zampini   Mat             B = NULL;
191b49cda9fSStefano Zampini   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)A->data;
192b49cda9fSStefano Zampini   Mat_SeqDense    *b;
193b49cda9fSStefano Zampini   PetscErrorCode  ierr;
194b49cda9fSStefano Zampini   PetscInt        *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
1952e5835c6SStefano Zampini   const MatScalar *av;
196a13144ffSStefano Zampini   PetscBool       isseqdense;
197b49cda9fSStefano Zampini 
198b49cda9fSStefano Zampini   PetscFunctionBegin;
199a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
200a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
201a32993e3SJed Brown     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
202a13144ffSStefano Zampini   }
203a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
204b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
205b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
206b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
207b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
208b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
209a13144ffSStefano Zampini   } else {
210a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
211580bdb30SBarry Smith     ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr);
212a13144ffSStefano Zampini   }
2132e5835c6SStefano Zampini   ierr = MatSeqAIJGetArrayRead(A,&av);CHKERRQ(ierr);
214b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
215b49cda9fSStefano Zampini     PetscInt j;
216b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
217b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
218b49cda9fSStefano Zampini       aj++;
219b49cda9fSStefano Zampini       av++;
220b49cda9fSStefano Zampini     }
221b49cda9fSStefano Zampini     ai++;
222b49cda9fSStefano Zampini   }
2232e5835c6SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(A,&av);CHKERRQ(ierr);
224b49cda9fSStefano Zampini 
225511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
226a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22828be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
229b49cda9fSStefano Zampini   } else {
230a13144ffSStefano Zampini     if (B) *newmat = B;
231a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233b49cda9fSStefano Zampini   }
234b49cda9fSStefano Zampini   PetscFunctionReturn(0);
235b49cda9fSStefano Zampini }
236b49cda9fSStefano Zampini 
237cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2386a63e612SBarry Smith {
2396d4ec7b0SPierre Jolivet   Mat            B = NULL;
2406a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2416a63e612SBarry Smith   PetscErrorCode ierr;
2429399e1b8SMatthew G. Knepley   PetscInt       i, j;
2439399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2449399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2456a63e612SBarry Smith 
2466a63e612SBarry Smith   PetscFunctionBegin;
2476d4ec7b0SPierre Jolivet   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2486d4ec7b0SPierre Jolivet   if (reuse != MAT_REUSE_MATRIX) {
249ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2506a63e612SBarry Smith     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2516a63e612SBarry Smith     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2529399e1b8SMatthew G. Knepley     for (j=0; j<A->cmap->n; j++) {
2536d4ec7b0SPierre Jolivet       for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i];
2546a63e612SBarry Smith       aa += a->lda;
2556a63e612SBarry Smith     }
2569399e1b8SMatthew G. Knepley     ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2576d4ec7b0SPierre Jolivet   } else B = *newmat;
2589399e1b8SMatthew G. Knepley   aa = a->v;
2599399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2609399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2616d4ec7b0SPierre Jolivet     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];}
2629399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2639399e1b8SMatthew G. Knepley     aa  += a->lda;
2649399e1b8SMatthew G. Knepley   }
2659399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2666a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2676a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2686a63e612SBarry Smith 
269511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
27028be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2716d4ec7b0SPierre Jolivet   } else if (reuse != MAT_REUSE_MATRIX) *newmat = B;
2726a63e612SBarry Smith   PetscFunctionReturn(0);
2736a63e612SBarry Smith }
2746a63e612SBarry Smith 
275ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2761987afe7SBarry Smith {
2771987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
278ca15aa20SStefano Zampini   const PetscScalar *xv;
279ca15aa20SStefano Zampini   PetscScalar       *yv;
28023fff9afSBarry Smith   PetscBLASInt      N,m,ldax = 0,lday = 0,one = 1;
281efee365bSSatish Balay   PetscErrorCode    ierr;
2823a40ed3dSBarry Smith 
2833a40ed3dSBarry Smith   PetscFunctionBegin;
284ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr);
285ca15aa20SStefano Zampini   ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr);
286c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
287c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
288c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
289c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
290a5ce6ee0Svictorle   if (ldax>m || lday>m) {
291ca15aa20SStefano Zampini     PetscInt j;
292ca15aa20SStefano Zampini 
293d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
294ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
295a5ce6ee0Svictorle     }
296a5ce6ee0Svictorle   } else {
297ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
298a5ce6ee0Svictorle   }
299ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr);
300ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr);
301ca0c957dSBarry Smith   ierr = PetscLogFlops(PetscMax(2.0*N-1,0));CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3031987afe7SBarry Smith }
3041987afe7SBarry Smith 
305e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
306289bc588SBarry Smith {
307ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3083a40ed3dSBarry Smith 
3093a40ed3dSBarry Smith   PetscFunctionBegin;
3104e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
311ca15aa20SStefano Zampini   info->nz_allocated      = N;
312ca15aa20SStefano Zampini   info->nz_used           = N;
313ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
314ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3154e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3167adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3174e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3184e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3194e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3203a40ed3dSBarry Smith   PetscFunctionReturn(0);
321289bc588SBarry Smith }
322289bc588SBarry Smith 
323637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
32480cd9d93SLois Curfman McInnes {
325273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
326ca15aa20SStefano Zampini   PetscScalar    *v;
327efee365bSSatish Balay   PetscErrorCode ierr;
32823fff9afSBarry Smith   PetscBLASInt   one = 1,j,nz,lda = 0;
32980cd9d93SLois Curfman McInnes 
3303a40ed3dSBarry Smith   PetscFunctionBegin;
331ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
332c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
333d0f46423SBarry Smith   if (lda>A->rmap->n) {
334c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
335d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
336ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
337a5ce6ee0Svictorle     }
338a5ce6ee0Svictorle   } else {
339c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
340ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
341a5ce6ee0Svictorle   }
342efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
343ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
3443a40ed3dSBarry Smith   PetscFunctionReturn(0);
34580cd9d93SLois Curfman McInnes }
34680cd9d93SLois Curfman McInnes 
347e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3481cbb95d3SBarry Smith {
3491cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
350ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
351ca15aa20SStefano Zampini   const PetscScalar *v;
352ca15aa20SStefano Zampini   PetscErrorCode    ierr;
3531cbb95d3SBarry Smith 
3541cbb95d3SBarry Smith   PetscFunctionBegin;
3551cbb95d3SBarry Smith   *fl = PETSC_FALSE;
356d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
357ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
3581cbb95d3SBarry Smith   for (i=0; i<m; i++) {
359ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
360637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
361637a0070SStefano Zampini         goto restore;
3621cbb95d3SBarry Smith       }
3631cbb95d3SBarry Smith     }
364637a0070SStefano Zampini   }
3651cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
366637a0070SStefano Zampini restore:
367637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
368637a0070SStefano Zampini   PetscFunctionReturn(0);
369637a0070SStefano Zampini }
370637a0070SStefano Zampini 
371637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
372637a0070SStefano Zampini {
373637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
374637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
375637a0070SStefano Zampini   const PetscScalar *v;
376637a0070SStefano Zampini   PetscErrorCode    ierr;
377637a0070SStefano Zampini 
378637a0070SStefano Zampini   PetscFunctionBegin;
379637a0070SStefano Zampini   *fl = PETSC_FALSE;
380637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
381637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
382637a0070SStefano Zampini   for (i=0; i<m; i++) {
383637a0070SStefano Zampini     for (j=i; j<m; j++) {
384637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
385637a0070SStefano Zampini         goto restore;
386637a0070SStefano Zampini       }
387637a0070SStefano Zampini     }
388637a0070SStefano Zampini   }
389637a0070SStefano Zampini   *fl  = PETSC_TRUE;
390637a0070SStefano Zampini restore:
391637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
3921cbb95d3SBarry Smith   PetscFunctionReturn(0);
3931cbb95d3SBarry Smith }
3941cbb95d3SBarry Smith 
395ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
396b24902e0SBarry Smith {
397ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
398b24902e0SBarry Smith   PetscErrorCode ierr;
39923fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
400b24902e0SBarry Smith 
401b24902e0SBarry Smith   PetscFunctionBegin;
402aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
403aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
40423fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
40523fc5dcaSStefano Zampini     ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr);
40623fc5dcaSStefano Zampini   }
4070298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
408b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
409ca15aa20SStefano Zampini     const PetscScalar *av;
410ca15aa20SStefano Zampini     PetscScalar       *v;
411ca15aa20SStefano Zampini 
412ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
413ca15aa20SStefano Zampini     ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr);
41423fc5dcaSStefano Zampini     ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr);
415d0f46423SBarry Smith     m    = A->rmap->n;
41623fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
417d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
41823fc5dcaSStefano Zampini         ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr);
419b24902e0SBarry Smith       }
420b24902e0SBarry Smith     } else {
421ca15aa20SStefano Zampini       ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
422b24902e0SBarry Smith     }
423ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr);
424ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
425b24902e0SBarry Smith   }
426b24902e0SBarry Smith   PetscFunctionReturn(0);
427b24902e0SBarry Smith }
428b24902e0SBarry Smith 
429ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
43002cad45dSBarry Smith {
4316849ba73SBarry Smith   PetscErrorCode ierr;
43202cad45dSBarry Smith 
4333a40ed3dSBarry Smith   PetscFunctionBegin;
434ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
435d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
4365c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
437719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
438b24902e0SBarry Smith   PetscFunctionReturn(0);
439b24902e0SBarry Smith }
440b24902e0SBarry Smith 
4414396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
442289bc588SBarry Smith {
443c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4444396437dSToby Isaac   PetscBLASInt    info;
4456849ba73SBarry Smith   PetscErrorCode  ierr;
44667e560aaSBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
44800121966SStefano Zampini   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4494396437dSToby Isaac   PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
45000121966SStefano Zampini   ierr = PetscFPTrapPop();CHKERRQ(ierr);
45185e2c93fSHong Zhang   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
4524905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4534396437dSToby Isaac   PetscFunctionReturn(0);
4544396437dSToby Isaac }
4554396437dSToby Isaac 
4564396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat);
4574396437dSToby Isaac 
4584396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
4594396437dSToby Isaac {
4604396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4614396437dSToby Isaac   PetscBLASInt    info;
4624396437dSToby Isaac   PetscErrorCode  ierr;
4634396437dSToby Isaac 
4644396437dSToby Isaac   PetscFunctionBegin;
465a49dc2a2SStefano Zampini   if (A->spd) {
4664396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
46700121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4688b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
46900121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
47085e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
4714396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
472a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
473a49dc2a2SStefano Zampini   } else if (A->hermitian) {
4744396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
47500121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
476a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
47700121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
478a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
4794396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
480a49dc2a2SStefano Zampini #endif
481a49dc2a2SStefano Zampini   } else { /* symmetric case */
48200121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
483a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
48400121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
485a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
486a49dc2a2SStefano Zampini   }
4874905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4884396437dSToby Isaac   PetscFunctionReturn(0);
4894396437dSToby Isaac }
49085e2c93fSHong Zhang 
4914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
4924396437dSToby Isaac {
4934396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4944396437dSToby Isaac   PetscBLASInt    info;
4954396437dSToby Isaac   char            trans;
4964396437dSToby Isaac   PetscErrorCode  ierr;
4974396437dSToby Isaac 
4984396437dSToby Isaac   PetscFunctionBegin;
4994905a7bcSToby Isaac   if (PetscDefined(USE_COMPLEX)) {
5004905a7bcSToby Isaac     trans = 'C';
5014905a7bcSToby Isaac   } else {
5024905a7bcSToby Isaac     trans = 'T';
5034905a7bcSToby Isaac   }
5044905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5054905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5064905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5074905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5084905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5094905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5104905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5114905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5124905a7bcSToby Isaac   for (PetscInt j = 0; j < nrhs; j++) {
5134905a7bcSToby Isaac     for (PetscInt i = mat->rank; i < k; i++) {
5144905a7bcSToby Isaac       x[j*xlda + i] = 0.;
5154905a7bcSToby Isaac     }
5164905a7bcSToby Isaac   }
5174905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5184905a7bcSToby Isaac   PetscFunctionReturn(0);
5194905a7bcSToby Isaac }
5204905a7bcSToby Isaac 
5214396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
5224905a7bcSToby Isaac {
5234396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
5244396437dSToby Isaac   PetscBLASInt      info;
5254905a7bcSToby Isaac   PetscErrorCode    ierr;
5264396437dSToby Isaac 
5274396437dSToby Isaac   PetscFunctionBegin;
5284396437dSToby Isaac   if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) {
5294396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5304396437dSToby Isaac     PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5314396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5324396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5334396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5344396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5354396437dSToby Isaac     PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5364396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5374396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5384396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5394396437dSToby Isaac   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve");
5404396437dSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5414396437dSToby Isaac   PetscFunctionReturn(0);
5424396437dSToby Isaac }
5434396437dSToby Isaac 
5444396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5454396437dSToby Isaac {
5464396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense *) A->data;
5474905a7bcSToby Isaac   PetscScalar       *y;
5484905a7bcSToby Isaac   PetscBLASInt      m=0, k=0;
5494396437dSToby Isaac   PetscErrorCode    ierr;
5504905a7bcSToby Isaac 
5514905a7bcSToby Isaac   PetscFunctionBegin;
5524905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
5534905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
5544905a7bcSToby Isaac   if (k < m) {
5554396437dSToby Isaac     ierr = VecCopy(xx, mat->qrrhs);CHKERRQ(ierr);
5564396437dSToby Isaac     ierr = VecGetArray(mat->qrrhs,&y);CHKERRQ(ierr);
5574905a7bcSToby Isaac   } else {
5584396437dSToby Isaac     ierr = VecCopy(xx, yy);CHKERRQ(ierr);
5594905a7bcSToby Isaac     ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
5604905a7bcSToby Isaac   }
5614396437dSToby Isaac   *_y = y;
5624396437dSToby Isaac   *_k = k;
5634396437dSToby Isaac   *_m = m;
5644396437dSToby Isaac   PetscFunctionReturn(0);
5654396437dSToby Isaac }
5664396437dSToby Isaac 
5674396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5684396437dSToby Isaac {
5694396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
57042e9364cSSatish Balay   PetscScalar    *y = NULL;
5714396437dSToby Isaac   PetscBLASInt   m, k;
5724396437dSToby Isaac   PetscErrorCode ierr;
5734396437dSToby Isaac 
5744396437dSToby Isaac   PetscFunctionBegin;
5754396437dSToby Isaac   y   = *_y;
5764396437dSToby Isaac   *_y = NULL;
5774396437dSToby Isaac   k   = *_k;
5784396437dSToby Isaac   m   = *_m;
5794905a7bcSToby Isaac   if (k < m) {
5804905a7bcSToby Isaac     PetscScalar *yv;
5814905a7bcSToby Isaac     ierr = VecGetArray(yy,&yv);CHKERRQ(ierr);
5824905a7bcSToby Isaac     ierr = PetscArraycpy(yv, y, k);CHKERRQ(ierr);
5834905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&yv);CHKERRQ(ierr);
5844396437dSToby Isaac     ierr = VecRestoreArray(mat->qrrhs, &y);CHKERRQ(ierr);
5854905a7bcSToby Isaac   } else {
5864905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
5874905a7bcSToby Isaac   }
5884905a7bcSToby Isaac   PetscFunctionReturn(0);
5894905a7bcSToby Isaac }
5904905a7bcSToby Isaac 
5914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy)
5924396437dSToby Isaac {
59342e9364cSSatish Balay   PetscScalar    *y = NULL;
59442e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
5954396437dSToby Isaac   PetscErrorCode ierr;
5964396437dSToby Isaac 
5974396437dSToby Isaac   PetscFunctionBegin;
5984396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
5994396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6004396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6014396437dSToby Isaac   PetscFunctionReturn(0);
6024396437dSToby Isaac }
6034396437dSToby Isaac 
6044396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy)
6054396437dSToby Isaac {
60642e9364cSSatish Balay   PetscScalar    *y = NULL;
60742e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6084396437dSToby Isaac   PetscErrorCode ierr;
6094396437dSToby Isaac 
6104396437dSToby Isaac   PetscFunctionBegin;
6114396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6124396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6134396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6144396437dSToby Isaac   PetscFunctionReturn(0);
6154396437dSToby Isaac }
6164396437dSToby Isaac 
6174396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6184396437dSToby Isaac {
619e54beecaSStefano Zampini   PetscScalar    *y = NULL;
620e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6214396437dSToby Isaac   PetscErrorCode ierr;
6224396437dSToby Isaac 
6234396437dSToby Isaac   PetscFunctionBegin;
6244396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6254396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6264396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6274396437dSToby Isaac   PetscFunctionReturn(0);
6284396437dSToby Isaac }
6294396437dSToby Isaac 
6304396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6314396437dSToby Isaac {
632e54beecaSStefano Zampini   PetscScalar    *y = NULL;
633e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6344396437dSToby Isaac   PetscErrorCode ierr;
6354396437dSToby Isaac 
6364396437dSToby Isaac   PetscFunctionBegin;
6374396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6384396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6394396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6404396437dSToby Isaac   PetscFunctionReturn(0);
6414396437dSToby Isaac }
6424396437dSToby Isaac 
6434396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy)
6444396437dSToby Isaac {
645e54beecaSStefano Zampini   PetscScalar    *y = NULL;
646e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6474396437dSToby Isaac   PetscErrorCode ierr;
6484396437dSToby Isaac 
6494396437dSToby Isaac   PetscFunctionBegin;
6504396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6514396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6524396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6534396437dSToby Isaac   PetscFunctionReturn(0);
6544396437dSToby Isaac }
6554396437dSToby Isaac 
6564396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy)
6574396437dSToby Isaac {
65842e9364cSSatish Balay   PetscScalar    *y = NULL;
65942e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6604396437dSToby Isaac   PetscErrorCode ierr;
6614396437dSToby Isaac 
6624396437dSToby Isaac   PetscFunctionBegin;
6634396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6644396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6654396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6664396437dSToby Isaac   PetscFunctionReturn(0);
6674396437dSToby Isaac }
6684396437dSToby Isaac 
6694396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
6704905a7bcSToby Isaac {
6714905a7bcSToby Isaac   PetscErrorCode    ierr;
6724905a7bcSToby Isaac   const PetscScalar *b;
6734396437dSToby Isaac   PetscScalar       *y;
6744905a7bcSToby Isaac   PetscInt          n, _blda, _xlda;
6754396437dSToby Isaac   PetscBLASInt      nrhs=0,m=0,k=0,blda=0,xlda=0,ylda=0;
6764905a7bcSToby Isaac 
6774905a7bcSToby Isaac   PetscFunctionBegin;
67837b8ee88SJose E. Roman   *_ylda=0; *_m=0; *_nrhs=0; *_k=0;
6794905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
6804905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
6814905a7bcSToby Isaac   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
6824905a7bcSToby Isaac   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
6834905a7bcSToby Isaac   ierr = MatDenseGetLDA(B,&_blda);CHKERRQ(ierr);
6844905a7bcSToby Isaac   ierr = PetscBLASIntCast(_blda, &blda);CHKERRQ(ierr);
6854905a7bcSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
6864905a7bcSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
6874905a7bcSToby Isaac   if (xlda < m) {
6884396437dSToby Isaac     ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
6894396437dSToby Isaac     ierr = PetscMalloc1(nrhs * m, &y);CHKERRQ(ierr);
6904905a7bcSToby Isaac     if (blda == m) {
6914396437dSToby Isaac       ierr = PetscArraycpy(y,b,blda*nrhs);CHKERRQ(ierr);
6924905a7bcSToby Isaac     } else {
6934905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
6944396437dSToby Isaac         ierr = PetscArraycpy(&y[j*m],&b[j*blda],m);CHKERRQ(ierr);
6954905a7bcSToby Isaac       }
6964905a7bcSToby Isaac     }
6974396437dSToby Isaac     ylda = m;
6984396437dSToby Isaac     ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
6994905a7bcSToby Isaac   } else {
7004905a7bcSToby Isaac     if (blda == xlda) {
7014396437dSToby Isaac       ierr = MatCopy(B, X, SAME_NONZERO_PATTERN);CHKERRQ(ierr);
7024396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7034905a7bcSToby Isaac     } else {
7044396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7054396437dSToby Isaac       ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
7064905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
7074396437dSToby Isaac         ierr = PetscArraycpy(&y[j*xlda],&b[j*blda],m);CHKERRQ(ierr);
7084905a7bcSToby Isaac       }
7094396437dSToby Isaac       ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
7104905a7bcSToby Isaac     }
7114396437dSToby Isaac     ylda = xlda;
7124905a7bcSToby Isaac   }
7134396437dSToby Isaac   *_y    = y;
7144396437dSToby Isaac   *_ylda = ylda;
7154396437dSToby Isaac   *_k    = k;
7164396437dSToby Isaac   *_m    = m;
7174396437dSToby Isaac   *_nrhs = nrhs;
7184396437dSToby Isaac   PetscFunctionReturn(0);
7194396437dSToby Isaac }
7204396437dSToby Isaac 
7214396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
7224396437dSToby Isaac {
7234396437dSToby Isaac   PetscScalar       *y;
7244396437dSToby Isaac   PetscInt          _xlda;
7254396437dSToby Isaac   PetscBLASInt      k,ylda,nrhs,xlda=0;
7264396437dSToby Isaac   PetscErrorCode    ierr;
7274396437dSToby Isaac 
7284396437dSToby Isaac   PetscFunctionBegin;
7294396437dSToby Isaac   y    = *_y;
7304396437dSToby Isaac   *_y  = NULL;
7314396437dSToby Isaac   k    = *_k;
7324396437dSToby Isaac   ylda = *_ylda;
7334396437dSToby Isaac   nrhs = *_nrhs;
7344396437dSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
7354396437dSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
7364396437dSToby Isaac   if (xlda != ylda) {
7374905a7bcSToby Isaac     PetscScalar *xv;
7384905a7bcSToby Isaac     ierr = MatDenseGetArray(X,&xv);CHKERRQ(ierr);
7394905a7bcSToby Isaac     for (PetscInt j = 0; j < nrhs; j++) {
7404396437dSToby Isaac       ierr = PetscArraycpy(&xv[j*xlda],&y[j*ylda],k);CHKERRQ(ierr);
7414905a7bcSToby Isaac     }
7424905a7bcSToby Isaac     ierr = MatDenseRestoreArray(X,&xv);CHKERRQ(ierr);
7434396437dSToby Isaac     ierr = PetscFree(y);CHKERRQ(ierr);
7444905a7bcSToby Isaac   } else {
7454396437dSToby Isaac     ierr = MatDenseRestoreArray(X,&y);CHKERRQ(ierr);
7464905a7bcSToby Isaac   }
74785e2c93fSHong Zhang   PetscFunctionReturn(0);
74885e2c93fSHong Zhang }
74985e2c93fSHong Zhang 
7504396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X)
7514396437dSToby Isaac {
7524396437dSToby Isaac   PetscScalar    *y;
7534396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7544396437dSToby Isaac   PetscErrorCode ierr;
7554396437dSToby Isaac 
7564396437dSToby Isaac   PetscFunctionBegin;
7574396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7584396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7594396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7604396437dSToby Isaac   PetscFunctionReturn(0);
7614396437dSToby Isaac }
7624396437dSToby Isaac 
7634396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X)
7644396437dSToby Isaac {
7654396437dSToby Isaac   PetscScalar    *y;
7664396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7674396437dSToby Isaac   PetscErrorCode ierr;
7684396437dSToby Isaac 
7694396437dSToby Isaac   PetscFunctionBegin;
7704396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7714396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7724396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7734396437dSToby Isaac   PetscFunctionReturn(0);
7744396437dSToby Isaac }
7754396437dSToby Isaac 
7764396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7774396437dSToby Isaac {
7784396437dSToby Isaac   PetscScalar    *y;
7794396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7804396437dSToby Isaac   PetscErrorCode ierr;
7814396437dSToby Isaac 
7824396437dSToby Isaac   PetscFunctionBegin;
7834396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7844396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7854396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7864396437dSToby Isaac   PetscFunctionReturn(0);
7874396437dSToby Isaac }
7884396437dSToby Isaac 
7894396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7904396437dSToby Isaac {
7914396437dSToby Isaac   PetscScalar    *y;
7924396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7934396437dSToby Isaac   PetscErrorCode ierr;
7944396437dSToby Isaac 
7954396437dSToby Isaac   PetscFunctionBegin;
7964396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7974396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7984396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7994396437dSToby Isaac   PetscFunctionReturn(0);
8004396437dSToby Isaac }
8014396437dSToby Isaac 
8024396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X)
8034396437dSToby Isaac {
8044396437dSToby Isaac   PetscScalar    *y;
8054396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8064396437dSToby Isaac   PetscErrorCode ierr;
8074396437dSToby Isaac 
8084396437dSToby Isaac   PetscFunctionBegin;
8094396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8104396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8114396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8124396437dSToby Isaac   PetscFunctionReturn(0);
8134396437dSToby Isaac }
8144396437dSToby Isaac 
8154396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X)
8164396437dSToby Isaac {
8174396437dSToby Isaac   PetscScalar    *y;
8184396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8194396437dSToby Isaac   PetscErrorCode ierr;
8204396437dSToby Isaac 
8214396437dSToby Isaac   PetscFunctionBegin;
8224396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8234396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8244396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8254396437dSToby Isaac   PetscFunctionReturn(0);
8264396437dSToby Isaac }
8274396437dSToby Isaac 
82800121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat);
82900121966SStefano Zampini 
830db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
831db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
832db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
833ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
834db4efbfdSBarry Smith {
835db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
836db4efbfdSBarry Smith   PetscErrorCode ierr;
837db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
838db4efbfdSBarry Smith 
839db4efbfdSBarry Smith   PetscFunctionBegin;
840c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
841c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
842db4efbfdSBarry Smith   if (!mat->pivots) {
8438208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
8443bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
845db4efbfdSBarry Smith   }
846db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
8478e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
8488b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
8498e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
8508e57ea43SSatish Balay 
851e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
852e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
8538208b9aeSStefano Zampini 
8544396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_LU;
8554396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_LU;
8564396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8574396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU;
858d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
859db4efbfdSBarry Smith 
860f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
861f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
862f6224b95SHong Zhang 
863dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
864db4efbfdSBarry Smith   PetscFunctionReturn(0);
865db4efbfdSBarry Smith }
866db4efbfdSBarry Smith 
8674396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
8684396437dSToby Isaac {
8694396437dSToby Isaac   MatFactorInfo  info;
8704396437dSToby Isaac   PetscErrorCode ierr;
8714396437dSToby Isaac 
8724396437dSToby Isaac   PetscFunctionBegin;
8734396437dSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
8744396437dSToby Isaac   ierr = (*fact->ops->lufactor)(fact,NULL,NULL,&info);CHKERRQ(ierr);
8754396437dSToby Isaac   PetscFunctionReturn(0);
8764396437dSToby Isaac }
8774396437dSToby Isaac 
8784396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
8794396437dSToby Isaac {
8804396437dSToby Isaac   PetscFunctionBegin;
8814396437dSToby Isaac   fact->preallocated           = PETSC_TRUE;
8824396437dSToby Isaac   fact->assembled              = PETSC_TRUE;
8834396437dSToby Isaac   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
8844396437dSToby Isaac   fact->ops->solve             = MatSolve_SeqDense_LU;
8854396437dSToby Isaac   fact->ops->matsolve          = MatMatSolve_SeqDense_LU;
8864396437dSToby Isaac   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8874396437dSToby Isaac   PetscFunctionReturn(0);
8884396437dSToby Isaac }
8894396437dSToby Isaac 
890a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
891ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
892db4efbfdSBarry Smith {
893db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
894db4efbfdSBarry Smith   PetscErrorCode ierr;
895c5df96a5SBarry Smith   PetscBLASInt   info,n;
896db4efbfdSBarry Smith 
897db4efbfdSBarry Smith   PetscFunctionBegin;
898c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
899db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
900a49dc2a2SStefano Zampini   if (A->spd) {
90100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
9028b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
90300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
904a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
905a49dc2a2SStefano Zampini   } else if (A->hermitian) {
906a49dc2a2SStefano Zampini     if (!mat->pivots) {
907a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
908a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
909a49dc2a2SStefano Zampini     }
910a49dc2a2SStefano Zampini     if (!mat->fwork) {
911a49dc2a2SStefano Zampini       PetscScalar dummy;
912a49dc2a2SStefano Zampini 
913a49dc2a2SStefano Zampini       mat->lfwork = -1;
91400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
915a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
91600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
917a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
918a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
919a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
920a49dc2a2SStefano Zampini     }
92100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
922a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
92300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
924a49dc2a2SStefano Zampini #endif
925a49dc2a2SStefano Zampini   } else { /* symmetric case */
926a49dc2a2SStefano Zampini     if (!mat->pivots) {
927a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
928a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
929a49dc2a2SStefano Zampini     }
930a49dc2a2SStefano Zampini     if (!mat->fwork) {
931a49dc2a2SStefano Zampini       PetscScalar dummy;
932a49dc2a2SStefano Zampini 
933a49dc2a2SStefano Zampini       mat->lfwork = -1;
93400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
935a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
93600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
937a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
938a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
939a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
940a49dc2a2SStefano Zampini     }
94100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
942a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
94300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
944a49dc2a2SStefano Zampini   }
945e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
9468208b9aeSStefano Zampini 
9474396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_Cholesky;
9484396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_Cholesky;
9494396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_Cholesky;
9504396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky;
951d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
9522205254eSKarl Rupp 
953f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
954f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
955f6224b95SHong Zhang 
956eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
957db4efbfdSBarry Smith   PetscFunctionReturn(0);
958db4efbfdSBarry Smith }
959db4efbfdSBarry Smith 
9604396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
961db4efbfdSBarry Smith {
962db4efbfdSBarry Smith   PetscErrorCode ierr;
963db4efbfdSBarry Smith   MatFactorInfo  info;
964db4efbfdSBarry Smith 
965db4efbfdSBarry Smith   PetscFunctionBegin;
966db4efbfdSBarry Smith   info.fill = 1.0;
9672205254eSKarl Rupp 
968c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
969f4259b30SLisandro Dalcin   ierr = (*fact->ops->choleskyfactor)(fact,NULL,&info);CHKERRQ(ierr);
970db4efbfdSBarry Smith   PetscFunctionReturn(0);
971db4efbfdSBarry Smith }
972db4efbfdSBarry Smith 
973ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
974db4efbfdSBarry Smith {
975db4efbfdSBarry Smith   PetscFunctionBegin;
976c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
9771bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
978719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
9794396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_Cholesky;
9804396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_Cholesky;
9814396437dSToby Isaac   fact->ops->solvetranspose        = MatSolve_SeqDense_Cholesky;
982db4efbfdSBarry Smith   PetscFunctionReturn(0);
983db4efbfdSBarry Smith }
984db4efbfdSBarry Smith 
9854905a7bcSToby Isaac static PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo)
9864905a7bcSToby Isaac {
9874905a7bcSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9884905a7bcSToby Isaac   PetscErrorCode ierr;
9894905a7bcSToby Isaac   PetscBLASInt   n,m,info, min, max;
9904905a7bcSToby Isaac 
9914905a7bcSToby Isaac   PetscFunctionBegin;
9924905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
9934905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
9944396437dSToby Isaac   max = PetscMax(m, n);
9954396437dSToby Isaac   min = PetscMin(m, n);
9964905a7bcSToby Isaac   if (!mat->tau) {
9974396437dSToby Isaac     ierr = PetscMalloc1(min,&mat->tau);CHKERRQ(ierr);
9984396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar));CHKERRQ(ierr);
9994396437dSToby Isaac   }
10004396437dSToby Isaac   if (!mat->pivots) {
10014396437dSToby Isaac     ierr = PetscMalloc1(m,&mat->pivots);CHKERRQ(ierr);
10024396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscScalar));CHKERRQ(ierr);
10034396437dSToby Isaac   }
10044396437dSToby Isaac   if (!mat->qrrhs) {
10054396437dSToby Isaac     ierr = MatCreateVecs(A, NULL, &(mat->qrrhs));CHKERRQ(ierr);
10064905a7bcSToby Isaac   }
10074905a7bcSToby Isaac   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
10084905a7bcSToby Isaac   if (!mat->fwork) {
10094905a7bcSToby Isaac     PetscScalar dummy;
10104905a7bcSToby Isaac 
10114905a7bcSToby Isaac     mat->lfwork = -1;
10124905a7bcSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10134905a7bcSToby Isaac     PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info));
10144905a7bcSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
10154905a7bcSToby Isaac     mat->lfwork = (PetscInt)PetscRealPart(dummy);
10164905a7bcSToby Isaac     ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
10174905a7bcSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
10184905a7bcSToby Isaac   }
10194905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10204905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info));
10214905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
10224905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization");
10234905a7bcSToby Isaac   // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR.  For now just say rank is min of m and n
10244905a7bcSToby Isaac   mat->rank = min;
10254905a7bcSToby Isaac 
10264396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_QR;
10274396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_QR;
10284905a7bcSToby Isaac   A->factortype             = MAT_FACTOR_QR;
10294905a7bcSToby Isaac   if (m == n) {
10304396437dSToby Isaac     A->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10314396437dSToby Isaac     A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10324905a7bcSToby Isaac   }
10334905a7bcSToby Isaac 
10344905a7bcSToby Isaac   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
10354905a7bcSToby Isaac   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
10364905a7bcSToby Isaac 
10374905a7bcSToby Isaac   ierr = PetscLogFlops(2.0*min*min*(max-min/3.0));CHKERRQ(ierr);
10384905a7bcSToby Isaac   PetscFunctionReturn(0);
10394905a7bcSToby Isaac }
10404905a7bcSToby Isaac 
10414905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
10424905a7bcSToby Isaac {
10434905a7bcSToby Isaac   PetscErrorCode ierr;
10444905a7bcSToby Isaac   MatFactorInfo  info;
10454905a7bcSToby Isaac 
10464905a7bcSToby Isaac   PetscFunctionBegin;
10474905a7bcSToby Isaac   info.fill = 1.0;
10484905a7bcSToby Isaac 
10494905a7bcSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
10504905a7bcSToby Isaac   ierr = MatQRFactor_SeqDense(fact,NULL,&info);CHKERRQ(ierr);
10514905a7bcSToby Isaac   PetscFunctionReturn(0);
10524905a7bcSToby Isaac }
10534905a7bcSToby Isaac 
10544905a7bcSToby Isaac static PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
10554905a7bcSToby Isaac {
10564905a7bcSToby Isaac   PetscErrorCode ierr;
10574905a7bcSToby Isaac 
10584905a7bcSToby Isaac   PetscFunctionBegin;
10594905a7bcSToby Isaac   fact->assembled                  = PETSC_TRUE;
10604905a7bcSToby Isaac   fact->preallocated               = PETSC_TRUE;
10614396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_QR;
10624396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_QR;
10634396437dSToby Isaac   if (A->cmap->n == A->rmap->n) {
10644396437dSToby Isaac     fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10654396437dSToby Isaac     fact->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10664396437dSToby Isaac   }
10674905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
10684905a7bcSToby Isaac   PetscFunctionReturn(0);
10694905a7bcSToby Isaac }
10704905a7bcSToby Isaac 
10714905a7bcSToby Isaac 
1072ca15aa20SStefano Zampini /* uses LAPACK */
1073cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
1074db4efbfdSBarry Smith {
1075db4efbfdSBarry Smith   PetscErrorCode ierr;
1076db4efbfdSBarry Smith 
1077db4efbfdSBarry Smith   PetscFunctionBegin;
1078ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
1079db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1080ca15aa20SStefano Zampini   ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr);
10812a350339SBarry Smith   if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) {
1082db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
10832a350339SBarry Smith     (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense;
1084db4efbfdSBarry Smith   } else {
1085db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
1086db4efbfdSBarry Smith   }
1087d5f3da31SBarry Smith   (*fact)->factortype = ftype;
108800c67f3bSHong Zhang 
108900c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
109000c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
1091db4efbfdSBarry Smith   PetscFunctionReturn(0);
1092db4efbfdSBarry Smith }
1093db4efbfdSBarry Smith 
1094289bc588SBarry Smith /* ------------------------------------------------------------------*/
1095e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
1096289bc588SBarry Smith {
1097c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1098d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
1099d9ca1df4SBarry Smith   const PetscScalar *b;
1100dfbe8321SBarry Smith   PetscErrorCode    ierr;
1101d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
110223fff9afSBarry Smith   PetscBLASInt      o = 1,bm = 0;
1103289bc588SBarry Smith 
11043a40ed3dSBarry Smith   PetscFunctionBegin;
1105ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1106c70f7ee4SJunchao Zhang   if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
1107ca15aa20SStefano Zampini #endif
1108422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
1109c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
1110289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
11113bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
11122dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
1113289bc588SBarry Smith   }
11141ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1115d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1116b965ef7fSBarry Smith   its  = its*lits;
1117e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1118289bc588SBarry Smith   while (its--) {
1119fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1120289bc588SBarry Smith       for (i=0; i<m; i++) {
11213bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
112255a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1123289bc588SBarry Smith       }
1124289bc588SBarry Smith     }
1125fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1126289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
11273bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
112855a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1129289bc588SBarry Smith       }
1130289bc588SBarry Smith     }
1131289bc588SBarry Smith   }
1132d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
11331ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
11343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1135289bc588SBarry Smith }
1136289bc588SBarry Smith 
1137289bc588SBarry Smith /* -----------------------------------------------------------------*/
1138ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
1139289bc588SBarry Smith {
1140c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1141d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
1142d9ca1df4SBarry Smith   PetscScalar       *y;
1143dfbe8321SBarry Smith   PetscErrorCode    ierr;
11440805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
1145ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
11463a40ed3dSBarry Smith 
11473a40ed3dSBarry Smith   PetscFunctionBegin;
1148c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1149c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1150d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11512bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11525ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11535ac36cfcSBarry Smith     PetscBLASInt i;
11545ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
11555ac36cfcSBarry Smith   } else {
11568b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
11575ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
11585ac36cfcSBarry Smith   }
1159d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11602bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1162289bc588SBarry Smith }
1163800995b7SMatthew Knepley 
1164ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
1165289bc588SBarry Smith {
1166c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1167d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
1168dfbe8321SBarry Smith   PetscErrorCode    ierr;
11690805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
1170d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
11713a40ed3dSBarry Smith 
11723a40ed3dSBarry Smith   PetscFunctionBegin;
1173c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1174c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1175d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11762bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11775ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11785ac36cfcSBarry Smith     PetscBLASInt i;
11795ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
11805ac36cfcSBarry Smith   } else {
11818b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
11825ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
11835ac36cfcSBarry Smith   }
1184d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11852bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11863a40ed3dSBarry Smith   PetscFunctionReturn(0);
1187289bc588SBarry Smith }
11886ee01492SSatish Balay 
1189ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1190289bc588SBarry Smith {
1191c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1192d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1193d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
1194dfbe8321SBarry Smith   PetscErrorCode    ierr;
11950805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
11963a40ed3dSBarry Smith 
11973a40ed3dSBarry Smith   PetscFunctionBegin;
1198c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1199c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
120017b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1201d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1202d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12031ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12048b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1205d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12061ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1207dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1209289bc588SBarry Smith }
12106ee01492SSatish Balay 
1211ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1212289bc588SBarry Smith {
1213c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1214d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1215d9ca1df4SBarry Smith   PetscScalar       *y;
1216dfbe8321SBarry Smith   PetscErrorCode    ierr;
12170805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
121887828ca2SBarry Smith   PetscScalar       _DOne=1.0;
12193a40ed3dSBarry Smith 
12203a40ed3dSBarry Smith   PetscFunctionBegin;
1221c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1222c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
122317b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1224d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1225d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12261ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12278b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1228d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12291ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1230dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12313a40ed3dSBarry Smith   PetscFunctionReturn(0);
1232289bc588SBarry Smith }
1233289bc588SBarry Smith 
1234289bc588SBarry Smith /* -----------------------------------------------------------------*/
1235e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1236289bc588SBarry Smith {
1237c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
12386849ba73SBarry Smith   PetscErrorCode ierr;
123913f74950SBarry Smith   PetscInt       i;
124067e560aaSBarry Smith 
12413a40ed3dSBarry Smith   PetscFunctionBegin;
1242d0f46423SBarry Smith   *ncols = A->cmap->n;
1243289bc588SBarry Smith   if (cols) {
1244*3741e84bSPierre Jolivet     ierr = PetscMalloc1(A->cmap->n,cols);CHKERRQ(ierr);
1245d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
1246289bc588SBarry Smith   }
1247289bc588SBarry Smith   if (vals) {
1248ca15aa20SStefano Zampini     const PetscScalar *v;
1249ca15aa20SStefano Zampini 
1250ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1251*3741e84bSPierre Jolivet     ierr = PetscMalloc1(A->cmap->n,vals);CHKERRQ(ierr);
1252ca15aa20SStefano Zampini     v   += row;
1253d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
1254ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1255289bc588SBarry Smith   }
12563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1257289bc588SBarry Smith }
12586ee01492SSatish Balay 
1259e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1260289bc588SBarry Smith {
1261dfbe8321SBarry Smith   PetscErrorCode ierr;
12626e111a19SKarl Rupp 
1263606d414cSSatish Balay   PetscFunctionBegin;
1264606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
1265606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
12663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1267289bc588SBarry Smith }
1268289bc588SBarry Smith /* ----------------------------------------------------------------*/
1269e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
1270289bc588SBarry Smith {
1271c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
1272ca15aa20SStefano Zampini   PetscScalar      *av;
127313f74950SBarry Smith   PetscInt         i,j,idx=0;
1274ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1275c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
1276ca15aa20SStefano Zampini #endif
1277ca15aa20SStefano Zampini   PetscErrorCode   ierr;
1278d6dfbf8fSBarry Smith 
12793a40ed3dSBarry Smith   PetscFunctionBegin;
1280ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr);
1281289bc588SBarry Smith   if (!mat->roworiented) {
1282dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1283289bc588SBarry Smith       for (j=0; j<n; j++) {
1284cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1285cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1286289bc588SBarry Smith         for (i=0; i<m; i++) {
1287cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1288cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1289ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1290289bc588SBarry Smith         }
1291289bc588SBarry Smith       }
12923a40ed3dSBarry Smith     } else {
1293289bc588SBarry Smith       for (j=0; j<n; j++) {
1294cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1295cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1296289bc588SBarry Smith         for (i=0; i<m; i++) {
1297cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1298cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1299ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1300289bc588SBarry Smith         }
1301289bc588SBarry Smith       }
1302289bc588SBarry Smith     }
13033a40ed3dSBarry Smith   } else {
1304dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1305e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
1306cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1307cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1308e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
1309cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1310cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1311ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1312e8d4e0b9SBarry Smith         }
1313e8d4e0b9SBarry Smith       }
13143a40ed3dSBarry Smith     } else {
1315289bc588SBarry Smith       for (i=0; i<m; i++) {
1316cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1317cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1318289bc588SBarry Smith         for (j=0; j<n; j++) {
1319cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1320cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1321ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1322289bc588SBarry Smith         }
1323289bc588SBarry Smith       }
1324289bc588SBarry Smith     }
1325e8d4e0b9SBarry Smith   }
1326ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
1327ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1328c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
1329c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
1330ca15aa20SStefano Zampini #endif
1331ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr);
1332ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1333c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1334ca15aa20SStefano Zampini #endif
13353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1336289bc588SBarry Smith }
1337e8d4e0b9SBarry Smith 
1338e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1339ae80bb75SLois Curfman McInnes {
1340ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1341ca15aa20SStefano Zampini   const PetscScalar *vv;
134213f74950SBarry Smith   PetscInt          i,j;
1343ca15aa20SStefano Zampini   PetscErrorCode    ierr;
1344ae80bb75SLois Curfman McInnes 
13453a40ed3dSBarry Smith   PetscFunctionBegin;
1346ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1347ae80bb75SLois Curfman McInnes   /* row-oriented output */
1348ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
134997e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1350e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1351ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
13526f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1353e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
1354ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1355ae80bb75SLois Curfman McInnes     }
1356ae80bb75SLois Curfman McInnes   }
1357ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
13583a40ed3dSBarry Smith   PetscFunctionReturn(0);
1359ae80bb75SLois Curfman McInnes }
1360ae80bb75SLois Curfman McInnes 
1361289bc588SBarry Smith /* -----------------------------------------------------------------*/
1362289bc588SBarry Smith 
13638491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1364aabbc4fbSShri Abhyankar {
1365aabbc4fbSShri Abhyankar   PetscErrorCode    ierr;
13668491ab44SLisandro Dalcin   PetscBool         skipHeader;
13678491ab44SLisandro Dalcin   PetscViewerFormat format;
13688491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
13698491ab44SLisandro Dalcin   const PetscScalar *v;
13708491ab44SLisandro Dalcin   PetscScalar       *vwork;
1371aabbc4fbSShri Abhyankar 
1372aabbc4fbSShri Abhyankar   PetscFunctionBegin;
13738491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
13748491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
13758491ab44SLisandro Dalcin   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
13768491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1377aabbc4fbSShri Abhyankar 
13788491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
13798491ab44SLisandro Dalcin 
13808491ab44SLisandro Dalcin   /* write matrix header */
13818491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
13828491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
13838491ab44SLisandro Dalcin   if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);}
13848491ab44SLisandro Dalcin 
13858491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
13868491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
13878491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
13888491ab44SLisandro Dalcin     /* store row lengths for each row */
13898491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr);
13908491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
13918491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
13928491ab44SLisandro Dalcin     /* store column indices (zero start index) */
13938491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
13948491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
13958491ab44SLisandro Dalcin         iwork[k] = j;
13968491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
13978491ab44SLisandro Dalcin     ierr = PetscFree(iwork);CHKERRQ(ierr);
13988491ab44SLisandro Dalcin   }
13998491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
14008491ab44SLisandro Dalcin   ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr);
14018491ab44SLisandro Dalcin   ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr);
14028491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14038491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
14048491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
14058491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
14068491ab44SLisandro Dalcin   ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr);
14078491ab44SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14088491ab44SLisandro Dalcin   ierr = PetscFree(vwork);CHKERRQ(ierr);
14098491ab44SLisandro Dalcin   PetscFunctionReturn(0);
14108491ab44SLisandro Dalcin }
14118491ab44SLisandro Dalcin 
14128491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
14138491ab44SLisandro Dalcin {
14148491ab44SLisandro Dalcin   PetscErrorCode ierr;
14158491ab44SLisandro Dalcin   PetscBool      skipHeader;
14168491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
14178491ab44SLisandro Dalcin   PetscInt       rows,cols;
14188491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
14198491ab44SLisandro Dalcin 
14208491ab44SLisandro Dalcin   PetscFunctionBegin;
14218491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
14228491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
14238491ab44SLisandro Dalcin 
14248491ab44SLisandro Dalcin   if (!skipHeader) {
14258491ab44SLisandro Dalcin     ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
14268491ab44SLisandro Dalcin     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
14278491ab44SLisandro Dalcin     M = header[1]; N = header[2];
14288491ab44SLisandro Dalcin     if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
14298491ab44SLisandro Dalcin     if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
14308491ab44SLisandro Dalcin     nz = header[3];
14318491ab44SLisandro Dalcin     if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz);
1432aabbc4fbSShri Abhyankar   } else {
14338491ab44SLisandro Dalcin     ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
14348491ab44SLisandro Dalcin     if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
14358491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1436e6324fbbSBarry Smith   }
1437aabbc4fbSShri Abhyankar 
14388491ab44SLisandro Dalcin   /* setup global sizes if not set */
14398491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
14408491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
14418491ab44SLisandro Dalcin   ierr = MatSetUp(mat);CHKERRQ(ierr);
14428491ab44SLisandro Dalcin   /* check if global sizes are correct */
14438491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
14448491ab44SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
1445aabbc4fbSShri Abhyankar 
14468491ab44SLisandro Dalcin   ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr);
14478491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
14488491ab44SLisandro Dalcin   ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr);
14498491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14508491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
14518491ab44SLisandro Dalcin     PetscInt nnz = m*N;
14528491ab44SLisandro Dalcin     /* read in matrix values */
14538491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr);
14548491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14558491ab44SLisandro Dalcin     /* store values in column major order */
14568491ab44SLisandro Dalcin     for (j=0; j<N; j++)
14578491ab44SLisandro Dalcin       for (i=0; i<m; i++)
14588491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
14598491ab44SLisandro Dalcin     ierr = PetscFree(vwork);CHKERRQ(ierr);
14608491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
14618491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
14628491ab44SLisandro Dalcin     /* read in row lengths */
14638491ab44SLisandro Dalcin     ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr);
14648491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14658491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
14668491ab44SLisandro Dalcin     /* read in column indices and values */
14678491ab44SLisandro Dalcin     ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr);
14688491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14698491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14708491ab44SLisandro Dalcin     /* store values in column major order */
14718491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
14728491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
14738491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
14748491ab44SLisandro Dalcin     ierr = PetscFree(rlens);CHKERRQ(ierr);
14758491ab44SLisandro Dalcin     ierr = PetscFree2(icols,vwork);CHKERRQ(ierr);
1476aabbc4fbSShri Abhyankar   }
14778491ab44SLisandro Dalcin   ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr);
14788491ab44SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14798491ab44SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1480aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1481aabbc4fbSShri Abhyankar }
1482aabbc4fbSShri Abhyankar 
1483eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1484eb91f321SVaclav Hapla {
1485eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1486eb91f321SVaclav Hapla   PetscErrorCode ierr;
1487eb91f321SVaclav Hapla 
1488eb91f321SVaclav Hapla   PetscFunctionBegin;
1489eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1490eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1491eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1492eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1493eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1494eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
1495eb91f321SVaclav Hapla   if (isbinary) {
14968491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1497eb91f321SVaclav Hapla   } else if (ishdf5) {
1498eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
1499eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1500eb91f321SVaclav Hapla #else
1501eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1502eb91f321SVaclav Hapla #endif
1503eb91f321SVaclav Hapla   } else {
1504eb91f321SVaclav Hapla     SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1505eb91f321SVaclav Hapla   }
1506eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1507eb91f321SVaclav Hapla }
1508eb91f321SVaclav Hapla 
15096849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1510289bc588SBarry Smith {
1511932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1512dfbe8321SBarry Smith   PetscErrorCode    ierr;
151313f74950SBarry Smith   PetscInt          i,j;
15142dcb1b2aSMatthew Knepley   const char        *name;
1515ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1516f3ef73ceSBarry Smith   PetscViewerFormat format;
15175f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1518ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
15195f481a85SSatish Balay #endif
1520932b0c3eSLois Curfman McInnes 
15213a40ed3dSBarry Smith   PetscFunctionBegin;
1522ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1523b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1524456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
15253a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1526fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1527d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1528d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1529ca15aa20SStefano Zampini       v    = av + i;
153077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1531d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1532aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1533329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
153457622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1535329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
153657622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
15376831982aSBarry Smith         }
153880cd9d93SLois Curfman McInnes #else
15396831982aSBarry Smith         if (*v) {
154057622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
15416831982aSBarry Smith         }
154280cd9d93SLois Curfman McInnes #endif
15431b807ce4Svictorle         v += a->lda;
154480cd9d93SLois Curfman McInnes       }
1545b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154680cd9d93SLois Curfman McInnes     }
1547d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
15483a40ed3dSBarry Smith   } else {
1549d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1550aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
155147989497SBarry Smith     /* determine if matrix has all real values */
1552ca15aa20SStefano Zampini     v = av;
1553d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1554ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
155547989497SBarry Smith     }
155647989497SBarry Smith #endif
1557fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
15583a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1559d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1560d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1561fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1562ffac6cdbSBarry Smith     }
1563ffac6cdbSBarry Smith 
1564d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1565ca15aa20SStefano Zampini       v = av + i;
1566d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1567aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
156847989497SBarry Smith         if (allreal) {
1569c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
157047989497SBarry Smith         } else {
1571c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
157247989497SBarry Smith         }
1573289bc588SBarry Smith #else
1574c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1575289bc588SBarry Smith #endif
15761b807ce4Svictorle         v += a->lda;
1577289bc588SBarry Smith       }
1578b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1579289bc588SBarry Smith     }
1580fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1581b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1582ffac6cdbSBarry Smith     }
1583d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1584da3a660dSBarry Smith   }
1585ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1586b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15873a40ed3dSBarry Smith   PetscFunctionReturn(0);
1588289bc588SBarry Smith }
1589289bc588SBarry Smith 
15909804daf3SBarry Smith #include <petscdraw.h>
1591e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1592f1af5d2fSBarry Smith {
1593f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
15946849ba73SBarry Smith   PetscErrorCode    ierr;
1595383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1596383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1597ca15aa20SStefano Zampini   const PetscScalar *v;
1598b0a32e0cSBarry Smith   PetscViewer       viewer;
1599b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1600f3ef73ceSBarry Smith   PetscViewerFormat format;
1601f1af5d2fSBarry Smith 
1602f1af5d2fSBarry Smith   PetscFunctionBegin;
1603f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1604b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1605b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1606f1af5d2fSBarry Smith 
1607f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1608ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1609fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1610383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1611f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1612f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1613383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1614f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1615f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1616f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1617ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1618ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1619ca15aa20SStefano Zampini         else continue;
1620b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1621f1af5d2fSBarry Smith       }
1622f1af5d2fSBarry Smith     }
1623383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1624f1af5d2fSBarry Smith   } else {
1625f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1626f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1627b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1628b05fc000SLisandro Dalcin     PetscDraw popup;
1629b05fc000SLisandro Dalcin 
1630f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1631f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1632f1af5d2fSBarry Smith     }
1633383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1634b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
163545f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1636383922c3SLisandro Dalcin 
1637383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1638f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1639f1af5d2fSBarry Smith       x_l = j;
1640f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1641f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1642f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1643f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1644b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1645b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1646f1af5d2fSBarry Smith       }
1647f1af5d2fSBarry Smith     }
1648383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1649f1af5d2fSBarry Smith   }
1650ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1651f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1652f1af5d2fSBarry Smith }
1653f1af5d2fSBarry Smith 
1654e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1655f1af5d2fSBarry Smith {
1656b0a32e0cSBarry Smith   PetscDraw      draw;
1657ace3abfcSBarry Smith   PetscBool      isnull;
1658329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1659dfbe8321SBarry Smith   PetscErrorCode ierr;
1660f1af5d2fSBarry Smith 
1661f1af5d2fSBarry Smith   PetscFunctionBegin;
1662b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1663b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1664abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1665f1af5d2fSBarry Smith 
1666d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1667f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1668b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1669832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1670b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
16710298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1672832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1673f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1674f1af5d2fSBarry Smith }
1675f1af5d2fSBarry Smith 
1676dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1677932b0c3eSLois Curfman McInnes {
1678dfbe8321SBarry Smith   PetscErrorCode ierr;
1679ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1680932b0c3eSLois Curfman McInnes 
16813a40ed3dSBarry Smith   PetscFunctionBegin;
1682251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1683251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1684251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
16850f5bd95cSBarry Smith 
1686c45a1595SBarry Smith   if (iascii) {
1687c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
16880f5bd95cSBarry Smith   } else if (isbinary) {
1689637a0070SStefano Zampini     ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr);
1690f1af5d2fSBarry Smith   } else if (isdraw) {
1691f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1692932b0c3eSLois Curfman McInnes   }
16933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1694932b0c3eSLois Curfman McInnes }
1695289bc588SBarry Smith 
1696637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1697d3042a70SBarry Smith {
1698d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1699d3042a70SBarry Smith 
1700d3042a70SBarry Smith   PetscFunctionBegin;
17015ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17025ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17035ea7661aSPierre Jolivet   if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first");
1704d3042a70SBarry Smith   a->unplacedarray       = a->v;
1705d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1706d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1707637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1708ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1709c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1710ca15aa20SStefano Zampini #endif
1711d3042a70SBarry Smith   PetscFunctionReturn(0);
1712d3042a70SBarry Smith }
1713d3042a70SBarry Smith 
1714d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1715d3042a70SBarry Smith {
1716d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1717d3042a70SBarry Smith 
1718d3042a70SBarry Smith   PetscFunctionBegin;
17195ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17205ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1721d3042a70SBarry Smith   a->v             = a->unplacedarray;
1722d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1723d3042a70SBarry Smith   a->unplacedarray = NULL;
1724ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1725c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1726ca15aa20SStefano Zampini #endif
1727d3042a70SBarry Smith   PetscFunctionReturn(0);
1728d3042a70SBarry Smith }
1729d3042a70SBarry Smith 
1730d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1731d5ea218eSStefano Zampini {
1732d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1733d5ea218eSStefano Zampini   PetscErrorCode ierr;
1734d5ea218eSStefano Zampini 
1735d5ea218eSStefano Zampini   PetscFunctionBegin;
17365ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17375ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1738d5ea218eSStefano Zampini   if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); }
1739d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1740d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1741d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1742d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1743d5ea218eSStefano Zampini #endif
1744d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1745d5ea218eSStefano Zampini }
1746d5ea218eSStefano Zampini 
1747ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1748289bc588SBarry Smith {
1749ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1750dfbe8321SBarry Smith   PetscErrorCode ierr;
175190f02eecSBarry Smith 
17523a40ed3dSBarry Smith   PetscFunctionBegin;
1753aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1754d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1755a5a9c739SBarry Smith #endif
17564396437dSToby Isaac   ierr = VecDestroy(&(l->qrrhs));CHKERRQ(ierr);
17574905a7bcSToby Isaac   ierr = PetscFree(l->tau);CHKERRQ(ierr);
175805b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1759a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1760abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
17616857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1762637a0070SStefano Zampini   if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);}
17635ea7661aSPierre Jolivet   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17645ea7661aSPierre Jolivet   if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17656947451fSStefano Zampini   ierr = VecDestroy(&l->cvec);CHKERRQ(ierr);
17665ea7661aSPierre Jolivet   ierr = MatDestroy(&l->cmat);CHKERRQ(ierr);
1767bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1768dbd8c25aSHong Zhang 
1769f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
17704905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL);CHKERRQ(ierr);
17714905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorNumeric_C",NULL);CHKERRQ(ierr);
17724905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorSymbolic_C",NULL);CHKERRQ(ierr);
177349a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
1774ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
1775bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
177652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
1777d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1778d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1779d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
178052c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
178152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
17826947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
17836947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
17848baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
17858baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17868baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
17878baccfbdSHong Zhang #endif
1788d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1789d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL);CHKERRQ(ierr);
1790d24d4204SJose E. Roman #endif
17912bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
17922bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr);
17934222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr);
17944222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr);
17952bf066beSStefano Zampini #endif
1796bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
17974222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
17984222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr);
17994222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
18004222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
180152c5f739Sprj- 
180286aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
180386aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
18046947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
18056947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
18066947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
18076947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
18086947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
18096947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
18105ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr);
18115ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr);
18123a40ed3dSBarry Smith   PetscFunctionReturn(0);
1813289bc588SBarry Smith }
1814289bc588SBarry Smith 
1815e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1816289bc588SBarry Smith {
1817c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
18186849ba73SBarry Smith   PetscErrorCode ierr;
18196536e3caSStefano Zampini   PetscInt       k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n;
182087828ca2SBarry Smith   PetscScalar    *v,tmp;
182148b35521SBarry Smith 
18223a40ed3dSBarry Smith   PetscFunctionBegin;
18236536e3caSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
18246536e3caSStefano Zampini     if (m == n) { /* in place transpose */
1825ca15aa20SStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1826d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1827289bc588SBarry Smith         for (k=0; k<j; k++) {
18281b807ce4Svictorle           tmp        = v[j + k*M];
18291b807ce4Svictorle           v[j + k*M] = v[k + j*M];
18301b807ce4Svictorle           v[k + j*M] = tmp;
1831289bc588SBarry Smith         }
1832289bc588SBarry Smith       }
1833ca15aa20SStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18346536e3caSStefano Zampini     } else { /* reuse memory, temporary allocates new memory */
18356536e3caSStefano Zampini       PetscScalar *v2;
18366536e3caSStefano Zampini       PetscLayout tmplayout;
18376536e3caSStefano Zampini 
18386536e3caSStefano Zampini       ierr = PetscMalloc1((size_t)m*n,&v2);CHKERRQ(ierr);
18396536e3caSStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
18406536e3caSStefano Zampini       for (j=0; j<n; j++) {
18416536e3caSStefano Zampini         for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M];
18426536e3caSStefano Zampini       }
18436536e3caSStefano Zampini       ierr = PetscArraycpy(v,v2,(size_t)m*n);CHKERRQ(ierr);
18446536e3caSStefano Zampini       ierr = PetscFree(v2);CHKERRQ(ierr);
18456536e3caSStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18466536e3caSStefano Zampini       /* cleanup size dependent quantities */
18476536e3caSStefano Zampini       ierr = VecDestroy(&mat->cvec);CHKERRQ(ierr);
18486536e3caSStefano Zampini       ierr = MatDestroy(&mat->cmat);CHKERRQ(ierr);
18496536e3caSStefano Zampini       ierr = PetscFree(mat->pivots);CHKERRQ(ierr);
18506536e3caSStefano Zampini       ierr = PetscFree(mat->fwork);CHKERRQ(ierr);
18516536e3caSStefano Zampini       ierr = MatDestroy(&mat->ptapwork);CHKERRQ(ierr);
18526536e3caSStefano Zampini       /* swap row/col layouts */
18536536e3caSStefano Zampini       mat->lda  = n;
18546536e3caSStefano Zampini       tmplayout = A->rmap;
18556536e3caSStefano Zampini       A->rmap   = A->cmap;
18566536e3caSStefano Zampini       A->cmap   = tmplayout;
18576536e3caSStefano Zampini     }
18583a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1859d3e5ee88SLois Curfman McInnes     Mat          tmat;
1860ec8511deSBarry Smith     Mat_SeqDense *tmatd;
186187828ca2SBarry Smith     PetscScalar  *v2;
1862af36a384SStefano Zampini     PetscInt     M2;
1863ea709b57SSatish Balay 
18646536e3caSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX) {
1865ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1866d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
18677adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
18680298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1869ca15aa20SStefano Zampini     } else tmat = *matout;
1870ca15aa20SStefano Zampini 
1871ca15aa20SStefano Zampini     ierr  = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
1872ca15aa20SStefano Zampini     ierr  = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr);
1873ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1874ca15aa20SStefano Zampini     M2    = tmatd->lda;
1875d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1876af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1877d3e5ee88SLois Curfman McInnes     }
1878ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr);
1879ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
18806d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18816d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18826536e3caSStefano Zampini     *matout = tmat;
188348b35521SBarry Smith   }
18843a40ed3dSBarry Smith   PetscFunctionReturn(0);
1885289bc588SBarry Smith }
1886289bc588SBarry Smith 
1887e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1888289bc588SBarry Smith {
1889c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1890c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1891ca15aa20SStefano Zampini   PetscInt          i;
1892ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
1893ca15aa20SStefano Zampini   PetscErrorCode    ierr;
18949ea5d5aeSSatish Balay 
18953a40ed3dSBarry Smith   PetscFunctionBegin;
1896d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1897d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1898ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr);
1899ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr);
1900ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
1901ca15aa20SStefano Zampini     ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr);
1902ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1903ca15aa20SStefano Zampini     v1 += mat1->lda;
1904ca15aa20SStefano Zampini     v2 += mat2->lda;
19051b807ce4Svictorle   }
1906ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr);
1907ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr);
190877c4ece6SBarry Smith   *flg = PETSC_TRUE;
19093a40ed3dSBarry Smith   PetscFunctionReturn(0);
1910289bc588SBarry Smith }
1911289bc588SBarry Smith 
1912e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1913289bc588SBarry Smith {
1914c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
191513f74950SBarry Smith   PetscInt          i,n,len;
1916ca15aa20SStefano Zampini   PetscScalar       *x;
1917ca15aa20SStefano Zampini   const PetscScalar *vv;
1918ca15aa20SStefano Zampini   PetscErrorCode    ierr;
191944cd7ae7SLois Curfman McInnes 
19203a40ed3dSBarry Smith   PetscFunctionBegin;
19217a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
19221ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1923d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1924ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1925e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
192644cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1927ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1928289bc588SBarry Smith   }
1929ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
19301ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
19313a40ed3dSBarry Smith   PetscFunctionReturn(0);
1932289bc588SBarry Smith }
1933289bc588SBarry Smith 
1934e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1935289bc588SBarry Smith {
1936c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1937f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1938ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1939dfbe8321SBarry Smith   PetscErrorCode    ierr;
1940d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
194155659b69SBarry Smith 
19423a40ed3dSBarry Smith   PetscFunctionBegin;
1943ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr);
194428988994SBarry Smith   if (ll) {
19457a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1946f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1947e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1948da3a660dSBarry Smith     for (i=0; i<m; i++) {
1949da3a660dSBarry Smith       x = l[i];
1950ca15aa20SStefano Zampini       v = vv + i;
1951b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1952da3a660dSBarry Smith     }
1953f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1954eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1955da3a660dSBarry Smith   }
195628988994SBarry Smith   if (rr) {
19577a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1958f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1959e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1960da3a660dSBarry Smith     for (i=0; i<n; i++) {
1961da3a660dSBarry Smith       x = r[i];
1962ca15aa20SStefano Zampini       v = vv + i*mat->lda;
19632205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1964da3a660dSBarry Smith     }
1965f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1966eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1967da3a660dSBarry Smith   }
1968ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr);
19693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1970289bc588SBarry Smith }
1971289bc588SBarry Smith 
1972ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1973289bc588SBarry Smith {
1974c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1975ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1976329f5518SBarry Smith   PetscReal         sum  = 0.0;
1977d0f46423SBarry Smith   PetscInt          lda  =mat->lda,m=A->rmap->n,i,j;
1978efee365bSSatish Balay   PetscErrorCode    ierr;
197955659b69SBarry Smith 
19803a40ed3dSBarry Smith   PetscFunctionBegin;
1981ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
1982ca15aa20SStefano Zampini   v    = vv;
1983289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1984a5ce6ee0Svictorle     if (lda>m) {
1985d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1986ca15aa20SStefano Zampini         v = vv+j*lda;
1987a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1988a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1989a5ce6ee0Svictorle         }
1990a5ce6ee0Svictorle       }
1991a5ce6ee0Svictorle     } else {
1992570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1993570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
199473cf7048SBarry Smith       PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one));
1995570b7f6dSBarry Smith     }
1996570b7f6dSBarry Smith #else
1997d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1998329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1999289bc588SBarry Smith       }
2000a5ce6ee0Svictorle     }
20018f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
2002570b7f6dSBarry Smith #endif
2003dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20043a40ed3dSBarry Smith   } else if (type == NORM_1) {
2005064f8208SBarry Smith     *nrm = 0.0;
2006d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2007ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
2008289bc588SBarry Smith       sum = 0.0;
2009d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
201033a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
2011289bc588SBarry Smith       }
2012064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2013289bc588SBarry Smith     }
2014eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20153a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
2016064f8208SBarry Smith     *nrm = 0.0;
2017d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
2018ca15aa20SStefano Zampini       v   = vv + j;
2019289bc588SBarry Smith       sum = 0.0;
2020d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
20211b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
2022289bc588SBarry Smith       }
2023064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2024289bc588SBarry Smith     }
2025eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
2026e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
2027ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
20283a40ed3dSBarry Smith   PetscFunctionReturn(0);
2029289bc588SBarry Smith }
2030289bc588SBarry Smith 
2031e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
2032289bc588SBarry Smith {
2033c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
203463ba0a88SBarry Smith   PetscErrorCode ierr;
203567e560aaSBarry Smith 
20363a40ed3dSBarry Smith   PetscFunctionBegin;
2037b5a2b587SKris Buschelman   switch (op) {
2038b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
20394e0d8c25SBarry Smith     aij->roworiented = flg;
2040b5a2b587SKris Buschelman     break;
2041512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
2042b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
20433971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
20448c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
204513fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
2046b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
2047b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
20480f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
20495021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
2050071fcb05SBarry Smith   case MAT_SORTED_FULL:
20515021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
20525021d80fSJed Brown     break;
20535021d80fSJed Brown   case MAT_SPD:
205477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
205577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
20569a4540c5SBarry Smith   case MAT_HERMITIAN:
20579a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
20585021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
205977e54ba9SKris Buschelman     break;
2060b5a2b587SKris Buschelman   default:
2061e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
20623a40ed3dSBarry Smith   }
20633a40ed3dSBarry Smith   PetscFunctionReturn(0);
2064289bc588SBarry Smith }
2065289bc588SBarry Smith 
2066e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
20676f0a148fSBarry Smith {
2068ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
20696849ba73SBarry Smith   PetscErrorCode ierr;
2070d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
2071ca15aa20SStefano Zampini   PetscScalar    *v;
20723a40ed3dSBarry Smith 
20733a40ed3dSBarry Smith   PetscFunctionBegin;
2074ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2075a5ce6ee0Svictorle   if (lda>m) {
2076d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2077ca15aa20SStefano Zampini       ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr);
2078a5ce6ee0Svictorle     }
2079a5ce6ee0Svictorle   } else {
2080ca15aa20SStefano Zampini     ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2081a5ce6ee0Svictorle   }
2082ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
20833a40ed3dSBarry Smith   PetscFunctionReturn(0);
20846f0a148fSBarry Smith }
20856f0a148fSBarry Smith 
2086e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
20876f0a148fSBarry Smith {
208897b48c8fSBarry Smith   PetscErrorCode    ierr;
2089ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
2090b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
2091ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
209297b48c8fSBarry Smith   const PetscScalar *xx;
209355659b69SBarry Smith 
20943a40ed3dSBarry Smith   PetscFunctionBegin;
209576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
2096b9679d65SBarry Smith     for (i=0; i<N; i++) {
2097b9679d65SBarry Smith       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
2098b9679d65SBarry Smith       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
2099b9679d65SBarry Smith     }
210076bd3646SJed Brown   }
2101ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
2102b9679d65SBarry Smith 
210397b48c8fSBarry Smith   /* fix right hand side if needed */
210497b48c8fSBarry Smith   if (x && b) {
210597b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
210697b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
21072205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
210897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
210997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
211097b48c8fSBarry Smith   }
211197b48c8fSBarry Smith 
2112ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
21136f0a148fSBarry Smith   for (i=0; i<N; i++) {
2114ca15aa20SStefano Zampini     slot = v + rows[i];
2115b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
21166f0a148fSBarry Smith   }
2117f4df32b1SMatthew Knepley   if (diag != 0.0) {
2118b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
21196f0a148fSBarry Smith     for (i=0; i<N; i++) {
2120ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
2121f4df32b1SMatthew Knepley       *slot = diag;
21226f0a148fSBarry Smith     }
21236f0a148fSBarry Smith   }
2124ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
21253a40ed3dSBarry Smith   PetscFunctionReturn(0);
21266f0a148fSBarry Smith }
2127557bce09SLois Curfman McInnes 
212849a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
212949a6ff4bSBarry Smith {
213049a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
213149a6ff4bSBarry Smith 
213249a6ff4bSBarry Smith   PetscFunctionBegin;
213349a6ff4bSBarry Smith   *lda = mat->lda;
213449a6ff4bSBarry Smith   PetscFunctionReturn(0);
213549a6ff4bSBarry Smith }
213649a6ff4bSBarry Smith 
2137637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
213864e87e97SBarry Smith {
2139c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
21403a40ed3dSBarry Smith 
21413a40ed3dSBarry Smith   PetscFunctionBegin;
2142616b8fbbSStefano Zampini   if (mat->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
214364e87e97SBarry Smith   *array = mat->v;
21443a40ed3dSBarry Smith   PetscFunctionReturn(0);
214564e87e97SBarry Smith }
21460754003eSLois Curfman McInnes 
2147637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
2148ff14e315SSatish Balay {
21493a40ed3dSBarry Smith   PetscFunctionBegin;
2150637a0070SStefano Zampini   *array = NULL;
21513a40ed3dSBarry Smith   PetscFunctionReturn(0);
2152ff14e315SSatish Balay }
21530754003eSLois Curfman McInnes 
2154dec5eb66SMatthew G Knepley /*@C
215549a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
215649a6ff4bSBarry Smith 
2157ad16ce7aSStefano Zampini    Not collective
215849a6ff4bSBarry Smith 
215949a6ff4bSBarry Smith    Input Parameter:
216049a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
216149a6ff4bSBarry Smith 
216249a6ff4bSBarry Smith    Output Parameter:
216349a6ff4bSBarry Smith .   lda - the leading dimension
216449a6ff4bSBarry Smith 
216549a6ff4bSBarry Smith    Level: intermediate
216649a6ff4bSBarry Smith 
2167ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
216849a6ff4bSBarry Smith @*/
216949a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
217049a6ff4bSBarry Smith {
217149a6ff4bSBarry Smith   PetscErrorCode ierr;
217249a6ff4bSBarry Smith 
217349a6ff4bSBarry Smith   PetscFunctionBegin;
2174d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2175d5ea218eSStefano Zampini   PetscValidPointer(lda,2);
217649a6ff4bSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr);
217749a6ff4bSBarry Smith   PetscFunctionReturn(0);
217849a6ff4bSBarry Smith }
217949a6ff4bSBarry Smith 
218049a6ff4bSBarry Smith /*@C
2181ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
2182ad16ce7aSStefano Zampini 
2183ad16ce7aSStefano Zampini    Not collective
2184ad16ce7aSStefano Zampini 
2185ad16ce7aSStefano Zampini    Input Parameter:
2186ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
2187ad16ce7aSStefano Zampini -  lda - the leading dimension
2188ad16ce7aSStefano Zampini 
2189ad16ce7aSStefano Zampini    Level: intermediate
2190ad16ce7aSStefano Zampini 
2191ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
2192ad16ce7aSStefano Zampini @*/
2193ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
2194ad16ce7aSStefano Zampini {
2195ad16ce7aSStefano Zampini   PetscErrorCode ierr;
2196ad16ce7aSStefano Zampini 
2197ad16ce7aSStefano Zampini   PetscFunctionBegin;
2198ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2199ad16ce7aSStefano Zampini   ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr);
2200ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
2201ad16ce7aSStefano Zampini }
2202ad16ce7aSStefano Zampini 
2203ad16ce7aSStefano Zampini /*@C
22046947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
220573a71a0fSBarry Smith 
22068572280aSBarry Smith    Logically Collective on Mat
220773a71a0fSBarry Smith 
220873a71a0fSBarry Smith    Input Parameter:
22096947451fSStefano Zampini .  mat - a dense matrix
221073a71a0fSBarry Smith 
221173a71a0fSBarry Smith    Output Parameter:
221273a71a0fSBarry Smith .   array - pointer to the data
221373a71a0fSBarry Smith 
221473a71a0fSBarry Smith    Level: intermediate
221573a71a0fSBarry Smith 
22166947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
221773a71a0fSBarry Smith @*/
22188c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
221973a71a0fSBarry Smith {
222073a71a0fSBarry Smith   PetscErrorCode ierr;
222173a71a0fSBarry Smith 
222273a71a0fSBarry Smith   PetscFunctionBegin;
2223d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2224d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22258c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
222673a71a0fSBarry Smith   PetscFunctionReturn(0);
222773a71a0fSBarry Smith }
222873a71a0fSBarry Smith 
2229dec5eb66SMatthew G Knepley /*@C
2230579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
223173a71a0fSBarry Smith 
22328572280aSBarry Smith    Logically Collective on Mat
22338572280aSBarry Smith 
22348572280aSBarry Smith    Input Parameters:
22356947451fSStefano Zampini +  mat - a dense matrix
2236a2b725a8SWilliam Gropp -  array - pointer to the data
22378572280aSBarry Smith 
22388572280aSBarry Smith    Level: intermediate
22398572280aSBarry Smith 
22406947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22418572280aSBarry Smith @*/
22428572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
22438572280aSBarry Smith {
22448572280aSBarry Smith   PetscErrorCode ierr;
22458572280aSBarry Smith 
22468572280aSBarry Smith   PetscFunctionBegin;
2247d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2248d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22498572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
22508572280aSBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2251637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2252637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
2253637a0070SStefano Zampini #endif
22548572280aSBarry Smith   PetscFunctionReturn(0);
22558572280aSBarry Smith }
22568572280aSBarry Smith 
22578572280aSBarry Smith /*@C
22586947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
22598572280aSBarry Smith 
22608572280aSBarry Smith    Not Collective
22618572280aSBarry Smith 
22628572280aSBarry Smith    Input Parameter:
22636947451fSStefano Zampini .  mat - a dense matrix
22648572280aSBarry Smith 
22658572280aSBarry Smith    Output Parameter:
22668572280aSBarry Smith .   array - pointer to the data
22678572280aSBarry Smith 
22688572280aSBarry Smith    Level: intermediate
22698572280aSBarry Smith 
22706947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22718572280aSBarry Smith @*/
22728572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
22738572280aSBarry Smith {
22748572280aSBarry Smith   PetscErrorCode ierr;
22758572280aSBarry Smith 
22768572280aSBarry Smith   PetscFunctionBegin;
2277d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2278d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22798572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
22808572280aSBarry Smith   PetscFunctionReturn(0);
22818572280aSBarry Smith }
22828572280aSBarry Smith 
22838572280aSBarry Smith /*@C
22846947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
22858572280aSBarry Smith 
228673a71a0fSBarry Smith    Not Collective
228773a71a0fSBarry Smith 
228873a71a0fSBarry Smith    Input Parameters:
22896947451fSStefano Zampini +  mat - a dense matrix
2290a2b725a8SWilliam Gropp -  array - pointer to the data
229173a71a0fSBarry Smith 
229273a71a0fSBarry Smith    Level: intermediate
229373a71a0fSBarry Smith 
22946947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
229573a71a0fSBarry Smith @*/
22968572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
229773a71a0fSBarry Smith {
229873a71a0fSBarry Smith   PetscErrorCode ierr;
229973a71a0fSBarry Smith 
230073a71a0fSBarry Smith   PetscFunctionBegin;
2301d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2302d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23038572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
230473a71a0fSBarry Smith   PetscFunctionReturn(0);
230573a71a0fSBarry Smith }
230673a71a0fSBarry Smith 
23076947451fSStefano Zampini /*@C
23086947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
23096947451fSStefano Zampini 
23106947451fSStefano Zampini    Not Collective
23116947451fSStefano Zampini 
23126947451fSStefano Zampini    Input Parameter:
23136947451fSStefano Zampini .  mat - a dense matrix
23146947451fSStefano Zampini 
23156947451fSStefano Zampini    Output Parameter:
23166947451fSStefano Zampini .   array - pointer to the data
23176947451fSStefano Zampini 
23186947451fSStefano Zampini    Level: intermediate
23196947451fSStefano Zampini 
23206947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23216947451fSStefano Zampini @*/
23226947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
23236947451fSStefano Zampini {
23246947451fSStefano Zampini   PetscErrorCode ierr;
23256947451fSStefano Zampini 
23266947451fSStefano Zampini   PetscFunctionBegin;
2327d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2328d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23296947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23306947451fSStefano Zampini   PetscFunctionReturn(0);
23316947451fSStefano Zampini }
23326947451fSStefano Zampini 
23336947451fSStefano Zampini /*@C
23346947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
23356947451fSStefano Zampini 
23366947451fSStefano Zampini    Not Collective
23376947451fSStefano Zampini 
23386947451fSStefano Zampini    Input Parameters:
23396947451fSStefano Zampini +  mat - a dense matrix
23406947451fSStefano Zampini -  array - pointer to the data
23416947451fSStefano Zampini 
23426947451fSStefano Zampini    Level: intermediate
23436947451fSStefano Zampini 
23446947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23456947451fSStefano Zampini @*/
23466947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
23476947451fSStefano Zampini {
23486947451fSStefano Zampini   PetscErrorCode ierr;
23496947451fSStefano Zampini 
23506947451fSStefano Zampini   PetscFunctionBegin;
2351d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2352d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23536947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23546947451fSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
23556947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
23566947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
23576947451fSStefano Zampini #endif
23586947451fSStefano Zampini   PetscFunctionReturn(0);
23596947451fSStefano Zampini }
23606947451fSStefano Zampini 
2361023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
23620754003eSLois Curfman McInnes {
2363c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
23646849ba73SBarry Smith   PetscErrorCode ierr;
2365ca15aa20SStefano Zampini   PetscInt       i,j,nrows,ncols,blda;
23665d0c19d7SBarry Smith   const PetscInt *irow,*icol;
236787828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
23680754003eSLois Curfman McInnes   Mat            newmat;
23690754003eSLois Curfman McInnes 
23703a40ed3dSBarry Smith   PetscFunctionBegin;
237178b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
237278b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
2373e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
2374e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
23750754003eSLois Curfman McInnes 
2376182d2002SSatish Balay   /* Check submatrixcall */
2377182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
237813f74950SBarry Smith     PetscInt n_cols,n_rows;
2379182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
238021a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2381f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
2382c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
238321a2c019SBarry Smith     }
2384182d2002SSatish Balay     newmat = *B;
2385182d2002SSatish Balay   } else {
23860754003eSLois Curfman McInnes     /* Create and fill new matrix */
2387ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2388f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
23897adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
23900298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
2391182d2002SSatish Balay   }
2392182d2002SSatish Balay 
2393182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
2394ca15aa20SStefano Zampini   ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr);
2395ca15aa20SStefano Zampini   ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr);
2396182d2002SSatish Balay   for (i=0; i<ncols; i++) {
23976de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2398ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2399ca15aa20SStefano Zampini     bv += blda;
24000754003eSLois Curfman McInnes   }
2401ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr);
2402182d2002SSatish Balay 
2403182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
24046d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24056d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24060754003eSLois Curfman McInnes 
24070754003eSLois Curfman McInnes   /* Free work space */
240878b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
240978b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
2410182d2002SSatish Balay   *B   = newmat;
24113a40ed3dSBarry Smith   PetscFunctionReturn(0);
24120754003eSLois Curfman McInnes }
24130754003eSLois Curfman McInnes 
24147dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2415905e6a2fSBarry Smith {
24166849ba73SBarry Smith   PetscErrorCode ierr;
241713f74950SBarry Smith   PetscInt       i;
2418905e6a2fSBarry Smith 
24193a40ed3dSBarry Smith   PetscFunctionBegin;
2420905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
2421*3741e84bSPierre Jolivet     ierr = PetscCalloc1(n,B);CHKERRQ(ierr);
2422905e6a2fSBarry Smith   }
2423905e6a2fSBarry Smith 
2424905e6a2fSBarry Smith   for (i=0; i<n; i++) {
2425023c16fcSToby Isaac     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i]);CHKERRQ(ierr);
2426905e6a2fSBarry Smith   }
24273a40ed3dSBarry Smith   PetscFunctionReturn(0);
2428905e6a2fSBarry Smith }
2429905e6a2fSBarry Smith 
2430e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2431c0aa2d19SHong Zhang {
2432c0aa2d19SHong Zhang   PetscFunctionBegin;
2433c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2434c0aa2d19SHong Zhang }
2435c0aa2d19SHong Zhang 
2436e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2437c0aa2d19SHong Zhang {
2438c0aa2d19SHong Zhang   PetscFunctionBegin;
2439c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2440c0aa2d19SHong Zhang }
2441c0aa2d19SHong Zhang 
2442a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
24434b0e389bSBarry Smith {
24444b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
24456849ba73SBarry Smith   PetscErrorCode    ierr;
2446ca15aa20SStefano Zampini   const PetscScalar *va;
2447ca15aa20SStefano Zampini   PetscScalar       *vb;
2448d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
24493a40ed3dSBarry Smith 
24503a40ed3dSBarry Smith   PetscFunctionBegin;
245133f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
245233f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
2453cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
24543a40ed3dSBarry Smith     PetscFunctionReturn(0);
24553a40ed3dSBarry Smith   }
2456e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
2457ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr);
2458ca15aa20SStefano Zampini   ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr);
2459a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
24600dbb7854Svictorle     for (j=0; j<n; j++) {
2461ca15aa20SStefano Zampini       ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr);
2462a5ce6ee0Svictorle     }
2463a5ce6ee0Svictorle   } else {
2464ca15aa20SStefano Zampini     ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2465a5ce6ee0Svictorle   }
2466ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr);
2467ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr);
2468ca15aa20SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2469ca15aa20SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2470273d9f13SBarry Smith   PetscFunctionReturn(0);
2471273d9f13SBarry Smith }
2472273d9f13SBarry Smith 
2473e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
2474273d9f13SBarry Smith {
2475dfbe8321SBarry Smith   PetscErrorCode ierr;
2476273d9f13SBarry Smith 
2477273d9f13SBarry Smith   PetscFunctionBegin;
247818992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
247918992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
248018992e5dSStefano Zampini   if (!A->preallocated) {
2481f4259b30SLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
248218992e5dSStefano Zampini   }
24833a40ed3dSBarry Smith   PetscFunctionReturn(0);
24844b0e389bSBarry Smith }
24854b0e389bSBarry Smith 
2486ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2487ba337c44SJed Brown {
24884396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
2489ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
24904396437dSToby Isaac   PetscInt       min = PetscMin(A->rmap->n,A->cmap->n);
2491ca15aa20SStefano Zampini   PetscScalar    *aa;
2492ca15aa20SStefano Zampini   PetscErrorCode ierr;
2493ba337c44SJed Brown 
2494ba337c44SJed Brown   PetscFunctionBegin;
2495ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2496ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
2497ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
24984396437dSToby Isaac   if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]);
2499ba337c44SJed Brown   PetscFunctionReturn(0);
2500ba337c44SJed Brown }
2501ba337c44SJed Brown 
2502ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2503ba337c44SJed Brown {
2504ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2505ca15aa20SStefano Zampini   PetscScalar    *aa;
2506ca15aa20SStefano Zampini   PetscErrorCode ierr;
2507ba337c44SJed Brown 
2508ba337c44SJed Brown   PetscFunctionBegin;
2509ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2510ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
2511ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2512ba337c44SJed Brown   PetscFunctionReturn(0);
2513ba337c44SJed Brown }
2514ba337c44SJed Brown 
2515ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2516ba337c44SJed Brown {
2517ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2518ca15aa20SStefano Zampini   PetscScalar    *aa;
2519ca15aa20SStefano Zampini   PetscErrorCode ierr;
2520ba337c44SJed Brown 
2521ba337c44SJed Brown   PetscFunctionBegin;
2522ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2523ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
2524ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2525ba337c44SJed Brown   PetscFunctionReturn(0);
2526ba337c44SJed Brown }
2527284134d9SBarry Smith 
2528a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
25294222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2530a9fe9ddaSSatish Balay {
2531ee16a9a1SHong Zhang   PetscErrorCode ierr;
2532d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
25337a3c3d58SStefano Zampini   PetscBool      cisdense;
2534a9fe9ddaSSatish Balay 
2535ee16a9a1SHong Zhang   PetscFunctionBegin;
25364222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25377a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25387a3c3d58SStefano Zampini   if (!cisdense) {
25397a3c3d58SStefano Zampini     PetscBool flg;
25407a3c3d58SStefano Zampini 
2541ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25424222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25437a3c3d58SStefano Zampini   }
254418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2545ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2546ee16a9a1SHong Zhang }
2547a9fe9ddaSSatish Balay 
2548a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2549a9fe9ddaSSatish Balay {
25506718818eSStefano Zampini   Mat_SeqDense       *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
25510805154bSBarry Smith   PetscBLASInt       m,n,k;
2552ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2553ca15aa20SStefano Zampini   PetscScalar       *cv;
2554a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2555c2916339SPierre Jolivet   PetscErrorCode    ierr;
2556a9fe9ddaSSatish Balay 
2557a9fe9ddaSSatish Balay   PetscFunctionBegin;
25588208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
25598208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2560c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
256149d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2562ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2563ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
25646718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2565ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2566ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2567ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2568ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
25696718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2570a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2571a9fe9ddaSSatish Balay }
2572a9fe9ddaSSatish Balay 
25734222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
257469f65d41SStefano Zampini {
257569f65d41SStefano Zampini   PetscErrorCode ierr;
257669f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
25777a3c3d58SStefano Zampini   PetscBool      cisdense;
257869f65d41SStefano Zampini 
257969f65d41SStefano Zampini   PetscFunctionBegin;
25804222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25817a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25827a3c3d58SStefano Zampini   if (!cisdense) {
25837a3c3d58SStefano Zampini     PetscBool flg;
25847a3c3d58SStefano Zampini 
2585ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25864222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25877a3c3d58SStefano Zampini   }
258818992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
258969f65d41SStefano Zampini   PetscFunctionReturn(0);
259069f65d41SStefano Zampini }
259169f65d41SStefano Zampini 
259269f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
259369f65d41SStefano Zampini {
259469f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
259569f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
259669f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
25976718818eSStefano Zampini   const PetscScalar *av,*bv;
25986718818eSStefano Zampini   PetscScalar       *cv;
259969f65d41SStefano Zampini   PetscBLASInt      m,n,k;
260069f65d41SStefano Zampini   PetscScalar       _DOne=1.0,_DZero=0.0;
260169f65d41SStefano Zampini   PetscErrorCode    ierr;
260269f65d41SStefano Zampini 
260369f65d41SStefano Zampini   PetscFunctionBegin;
260449d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
260549d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
260669f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
260749d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26086718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26096718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26106718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26116718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26126718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26136718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26146718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2615ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
261669f65d41SStefano Zampini   PetscFunctionReturn(0);
261769f65d41SStefano Zampini }
261869f65d41SStefano Zampini 
26194222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2620a9fe9ddaSSatish Balay {
2621ee16a9a1SHong Zhang   PetscErrorCode ierr;
2622d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
26237a3c3d58SStefano Zampini   PetscBool      cisdense;
2624a9fe9ddaSSatish Balay 
2625ee16a9a1SHong Zhang   PetscFunctionBegin;
26264222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
26277a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
26287a3c3d58SStefano Zampini   if (!cisdense) {
26297a3c3d58SStefano Zampini     PetscBool flg;
26307a3c3d58SStefano Zampini 
2631ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
26324222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
26337a3c3d58SStefano Zampini   }
263418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2635ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2636ee16a9a1SHong Zhang }
2637a9fe9ddaSSatish Balay 
263875648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2639a9fe9ddaSSatish Balay {
2640a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2641a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
2642a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
26436718818eSStefano Zampini   const PetscScalar *av,*bv;
26446718818eSStefano Zampini   PetscScalar       *cv;
26450805154bSBarry Smith   PetscBLASInt      m,n,k;
2646a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2647c5df96a5SBarry Smith   PetscErrorCode    ierr;
2648a9fe9ddaSSatish Balay 
2649a9fe9ddaSSatish Balay   PetscFunctionBegin;
26508208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
26518208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2652c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
265349d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26546718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26556718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26566718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26576718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26586718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26596718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26606718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2661ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2662a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2663a9fe9ddaSSatish Balay }
2664985db425SBarry Smith 
26654222ddf1SHong Zhang /* ----------------------------------------------- */
26664222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
26674222ddf1SHong Zhang {
26684222ddf1SHong Zhang   PetscFunctionBegin;
26694222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
26704222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
26714222ddf1SHong Zhang   PetscFunctionReturn(0);
26724222ddf1SHong Zhang }
26734222ddf1SHong Zhang 
26744222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
26754222ddf1SHong Zhang {
26764222ddf1SHong Zhang   PetscFunctionBegin;
26774222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
26784222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
26794222ddf1SHong Zhang   PetscFunctionReturn(0);
26804222ddf1SHong Zhang }
26814222ddf1SHong Zhang 
26824222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
26834222ddf1SHong Zhang {
26844222ddf1SHong Zhang   PetscFunctionBegin;
26854222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
26864222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
26874222ddf1SHong Zhang   PetscFunctionReturn(0);
26884222ddf1SHong Zhang }
26894222ddf1SHong Zhang 
26904222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
26914222ddf1SHong Zhang {
26924222ddf1SHong Zhang   PetscErrorCode ierr;
26934222ddf1SHong Zhang   Mat_Product    *product = C->product;
26944222ddf1SHong Zhang 
26954222ddf1SHong Zhang   PetscFunctionBegin;
26964222ddf1SHong Zhang   switch (product->type) {
26974222ddf1SHong Zhang   case MATPRODUCT_AB:
26984222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr);
26994222ddf1SHong Zhang     break;
27004222ddf1SHong Zhang   case MATPRODUCT_AtB:
27014222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr);
27024222ddf1SHong Zhang     break;
27034222ddf1SHong Zhang   case MATPRODUCT_ABt:
27044222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr);
27054222ddf1SHong Zhang     break;
27066718818eSStefano Zampini   default:
27074222ddf1SHong Zhang     break;
27084222ddf1SHong Zhang   }
27094222ddf1SHong Zhang   PetscFunctionReturn(0);
27104222ddf1SHong Zhang }
27114222ddf1SHong Zhang /* ----------------------------------------------- */
27124222ddf1SHong Zhang 
2713e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2714985db425SBarry Smith {
2715985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2716985db425SBarry Smith   PetscErrorCode     ierr;
2717d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2718985db425SBarry Smith   PetscScalar        *x;
2719ca15aa20SStefano Zampini   const PetscScalar *aa;
2720985db425SBarry Smith 
2721985db425SBarry Smith   PetscFunctionBegin;
2722e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2723985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2724985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2725ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2726e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2727985db425SBarry Smith   for (i=0; i<m; i++) {
2728985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2729985db425SBarry Smith     for (j=1; j<n; j++) {
2730ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2731985db425SBarry Smith     }
2732985db425SBarry Smith   }
2733ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2734985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2735985db425SBarry Smith   PetscFunctionReturn(0);
2736985db425SBarry Smith }
2737985db425SBarry Smith 
2738e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2739985db425SBarry Smith {
2740985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2741985db425SBarry Smith   PetscErrorCode    ierr;
2742d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2743985db425SBarry Smith   PetscScalar       *x;
2744985db425SBarry Smith   PetscReal         atmp;
2745ca15aa20SStefano Zampini   const PetscScalar *aa;
2746985db425SBarry Smith 
2747985db425SBarry Smith   PetscFunctionBegin;
2748e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2749985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2750985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2751ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2752e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2753985db425SBarry Smith   for (i=0; i<m; i++) {
27549189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2755985db425SBarry Smith     for (j=1; j<n; j++) {
2756ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2757985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2758985db425SBarry Smith     }
2759985db425SBarry Smith   }
2760ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2761985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2762985db425SBarry Smith   PetscFunctionReturn(0);
2763985db425SBarry Smith }
2764985db425SBarry Smith 
2765e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2766985db425SBarry Smith {
2767985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2768985db425SBarry Smith   PetscErrorCode    ierr;
2769d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2770985db425SBarry Smith   PetscScalar       *x;
2771ca15aa20SStefano Zampini   const PetscScalar *aa;
2772985db425SBarry Smith 
2773985db425SBarry Smith   PetscFunctionBegin;
2774e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2775ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2776985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2777985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2778e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2779985db425SBarry Smith   for (i=0; i<m; i++) {
2780985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2781985db425SBarry Smith     for (j=1; j<n; j++) {
2782ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2783985db425SBarry Smith     }
2784985db425SBarry Smith   }
2785985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2786ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2787985db425SBarry Smith   PetscFunctionReturn(0);
2788985db425SBarry Smith }
2789985db425SBarry Smith 
2790637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
27918d0534beSBarry Smith {
27928d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
27938d0534beSBarry Smith   PetscErrorCode    ierr;
27948d0534beSBarry Smith   PetscScalar       *x;
2795ca15aa20SStefano Zampini   const PetscScalar *aa;
27968d0534beSBarry Smith 
27978d0534beSBarry Smith   PetscFunctionBegin;
2798e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2799ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
28008d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2801ca15aa20SStefano Zampini   ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr);
28028d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2803ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
28048d0534beSBarry Smith   PetscFunctionReturn(0);
28058d0534beSBarry Smith }
28068d0534beSBarry Smith 
280752c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
28080716a85fSBarry Smith {
28090716a85fSBarry Smith   PetscErrorCode    ierr;
28100716a85fSBarry Smith   PetscInt          i,j,m,n;
28111683a169SBarry Smith   const PetscScalar *a;
28120716a85fSBarry Smith 
28130716a85fSBarry Smith   PetscFunctionBegin;
28140716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2815580bdb30SBarry Smith   ierr = PetscArrayzero(norms,n);CHKERRQ(ierr);
28161683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
28170716a85fSBarry Smith   if (type == NORM_2) {
28180716a85fSBarry Smith     for (i=0; i<n; i++) {
28190716a85fSBarry Smith       for (j=0; j<m; j++) {
28200716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
28210716a85fSBarry Smith       }
28220716a85fSBarry Smith       a += m;
28230716a85fSBarry Smith     }
28240716a85fSBarry Smith   } else if (type == NORM_1) {
28250716a85fSBarry Smith     for (i=0; i<n; i++) {
28260716a85fSBarry Smith       for (j=0; j<m; j++) {
28270716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
28280716a85fSBarry Smith       }
28290716a85fSBarry Smith       a += m;
28300716a85fSBarry Smith     }
28310716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
28320716a85fSBarry Smith     for (i=0; i<n; i++) {
28330716a85fSBarry Smith       for (j=0; j<m; j++) {
28340716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
28350716a85fSBarry Smith       }
28360716a85fSBarry Smith       a += m;
28370716a85fSBarry Smith     }
2838ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
28391683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr);
28400716a85fSBarry Smith   if (type == NORM_2) {
28418f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
28420716a85fSBarry Smith   }
28430716a85fSBarry Smith   PetscFunctionReturn(0);
28440716a85fSBarry Smith }
28450716a85fSBarry Smith 
284673a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
284773a71a0fSBarry Smith {
284873a71a0fSBarry Smith   PetscErrorCode ierr;
284973a71a0fSBarry Smith   PetscScalar    *a;
2850637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
285173a71a0fSBarry Smith 
285273a71a0fSBarry Smith   PetscFunctionBegin;
285373a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
2854637a0070SStefano Zampini   ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr);
28558c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
2856637a0070SStefano Zampini   for (j=0; j<n; j++) {
2857637a0070SStefano Zampini     for (i=0; i<m; i++) {
2858637a0070SStefano Zampini       ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr);
2859637a0070SStefano Zampini     }
286073a71a0fSBarry Smith   }
28618c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
286273a71a0fSBarry Smith   PetscFunctionReturn(0);
286373a71a0fSBarry Smith }
286473a71a0fSBarry Smith 
28653b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
28663b49f96aSBarry Smith {
28673b49f96aSBarry Smith   PetscFunctionBegin;
28683b49f96aSBarry Smith   *missing = PETSC_FALSE;
28693b49f96aSBarry Smith   PetscFunctionReturn(0);
28703b49f96aSBarry Smith }
287173a71a0fSBarry Smith 
2872ca15aa20SStefano Zampini /* vals is not const */
2873af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
287486aefd0dSHong Zhang {
2875ca15aa20SStefano Zampini   PetscErrorCode ierr;
287686aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2877ca15aa20SStefano Zampini   PetscScalar    *v;
287886aefd0dSHong Zhang 
287986aefd0dSHong Zhang   PetscFunctionBegin;
288086aefd0dSHong Zhang   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2881ca15aa20SStefano Zampini   ierr  = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2882ca15aa20SStefano Zampini   *vals = v+col*a->lda;
2883ca15aa20SStefano Zampini   ierr  = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
288486aefd0dSHong Zhang   PetscFunctionReturn(0);
288586aefd0dSHong Zhang }
288686aefd0dSHong Zhang 
2887af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
288886aefd0dSHong Zhang {
288986aefd0dSHong Zhang   PetscFunctionBegin;
2890f4259b30SLisandro Dalcin   *vals = NULL; /* user cannot accidently use the array later */
289186aefd0dSHong Zhang   PetscFunctionReturn(0);
289286aefd0dSHong Zhang }
2893abc3b08eSStefano Zampini 
2894289bc588SBarry Smith /* -------------------------------------------------------------------*/
2895a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2896905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2897905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2898905e6a2fSBarry Smith                                         MatMult_SeqDense,
289997304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
29007c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
29017c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2902f4259b30SLisandro Dalcin                                         NULL,
2903f4259b30SLisandro Dalcin                                         NULL,
2904f4259b30SLisandro Dalcin                                         NULL,
2905f4259b30SLisandro Dalcin                                 /* 10*/ NULL,
2906905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2907905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
290841f059aeSBarry Smith                                         MatSOR_SeqDense,
2909ec8511deSBarry Smith                                         MatTranspose_SeqDense,
291097304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2911905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2912905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2913905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2914905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2915c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2916c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2917905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2918905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2919d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2920f4259b30SLisandro Dalcin                                         NULL,
2921f4259b30SLisandro Dalcin                                         NULL,
2922f4259b30SLisandro Dalcin                                         NULL,
2923f4259b30SLisandro Dalcin                                         NULL,
29244994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2925f4259b30SLisandro Dalcin                                         NULL,
2926f4259b30SLisandro Dalcin                                         NULL,
2927f4259b30SLisandro Dalcin                                         NULL,
2928f4259b30SLisandro Dalcin                                         NULL,
2929d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2930f4259b30SLisandro Dalcin                                         NULL,
2931f4259b30SLisandro Dalcin                                         NULL,
2932f4259b30SLisandro Dalcin                                         NULL,
2933f4259b30SLisandro Dalcin                                         NULL,
2934d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
29357dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2936f4259b30SLisandro Dalcin                                         NULL,
29374b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2938a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2939d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2940a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
29417d68702bSBarry Smith                                         MatShift_Basic,
2942f4259b30SLisandro Dalcin                                         NULL,
29433f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
294473a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2945f4259b30SLisandro Dalcin                                         NULL,
2946f4259b30SLisandro Dalcin                                         NULL,
2947f4259b30SLisandro Dalcin                                         NULL,
2948f4259b30SLisandro Dalcin                                         NULL,
2949f4259b30SLisandro Dalcin                                 /* 54*/ NULL,
2950f4259b30SLisandro Dalcin                                         NULL,
2951f4259b30SLisandro Dalcin                                         NULL,
2952f4259b30SLisandro Dalcin                                         NULL,
2953f4259b30SLisandro Dalcin                                         NULL,
2954023c16fcSToby Isaac                                 /* 59*/ MatCreateSubMatrix_SeqDense,
2955e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2956e03a110bSBarry Smith                                         MatView_SeqDense,
2957f4259b30SLisandro Dalcin                                         NULL,
2958f4259b30SLisandro Dalcin                                         NULL,
2959f4259b30SLisandro Dalcin                                 /* 64*/ NULL,
2960f4259b30SLisandro Dalcin                                         NULL,
2961f4259b30SLisandro Dalcin                                         NULL,
2962f4259b30SLisandro Dalcin                                         NULL,
2963f4259b30SLisandro Dalcin                                         NULL,
2964d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
2965f4259b30SLisandro Dalcin                                         NULL,
2966f4259b30SLisandro Dalcin                                         NULL,
2967f4259b30SLisandro Dalcin                                         NULL,
2968f4259b30SLisandro Dalcin                                         NULL,
2969f4259b30SLisandro Dalcin                                 /* 74*/ NULL,
2970f4259b30SLisandro Dalcin                                         NULL,
2971f4259b30SLisandro Dalcin                                         NULL,
2972f4259b30SLisandro Dalcin                                         NULL,
2973f4259b30SLisandro Dalcin                                         NULL,
2974f4259b30SLisandro Dalcin                                 /* 79*/ NULL,
2975f4259b30SLisandro Dalcin                                         NULL,
2976f4259b30SLisandro Dalcin                                         NULL,
2977f4259b30SLisandro Dalcin                                         NULL,
29785bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2979637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
29801cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2981f4259b30SLisandro Dalcin                                         NULL,
2982f4259b30SLisandro Dalcin                                         NULL,
2983f4259b30SLisandro Dalcin                                         NULL,
2984f4259b30SLisandro Dalcin                                 /* 89*/ NULL,
2985f4259b30SLisandro Dalcin                                         NULL,
2986a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
2987f4259b30SLisandro Dalcin                                         NULL,
2988f4259b30SLisandro Dalcin                                         NULL,
2989f4259b30SLisandro Dalcin                                 /* 94*/ NULL,
2990f4259b30SLisandro Dalcin                                         NULL,
2991f4259b30SLisandro Dalcin                                         NULL,
299269f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2993f4259b30SLisandro Dalcin                                         NULL,
29944222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2995f4259b30SLisandro Dalcin                                         NULL,
2996f4259b30SLisandro Dalcin                                         NULL,
2997ba337c44SJed Brown                                         MatConjugate_SeqDense,
2998f4259b30SLisandro Dalcin                                         NULL,
2999f4259b30SLisandro Dalcin                                 /*104*/ NULL,
3000ba337c44SJed Brown                                         MatRealPart_SeqDense,
3001ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
3002f4259b30SLisandro Dalcin                                         NULL,
3003f4259b30SLisandro Dalcin                                         NULL,
3004f4259b30SLisandro Dalcin                                 /*109*/ NULL,
3005f4259b30SLisandro Dalcin                                         NULL,
30068d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
3007aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
30083b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
3009f4259b30SLisandro Dalcin                                 /*114*/ NULL,
3010f4259b30SLisandro Dalcin                                         NULL,
3011f4259b30SLisandro Dalcin                                         NULL,
3012f4259b30SLisandro Dalcin                                         NULL,
3013f4259b30SLisandro Dalcin                                         NULL,
3014f4259b30SLisandro Dalcin                                 /*119*/ NULL,
3015f4259b30SLisandro Dalcin                                         NULL,
3016f4259b30SLisandro Dalcin                                         NULL,
3017f4259b30SLisandro Dalcin                                         NULL,
3018f4259b30SLisandro Dalcin                                         NULL,
3019f4259b30SLisandro Dalcin                                 /*124*/ NULL,
30205df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
3021f4259b30SLisandro Dalcin                                         NULL,
3022f4259b30SLisandro Dalcin                                         NULL,
3023f4259b30SLisandro Dalcin                                         NULL,
3024f4259b30SLisandro Dalcin                                 /*129*/ NULL,
3025f4259b30SLisandro Dalcin                                         NULL,
3026f4259b30SLisandro Dalcin                                         NULL,
302775648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
3028f4259b30SLisandro Dalcin                                         NULL,
3029f4259b30SLisandro Dalcin                                 /*134*/ NULL,
3030f4259b30SLisandro Dalcin                                         NULL,
3031f4259b30SLisandro Dalcin                                         NULL,
3032f4259b30SLisandro Dalcin                                         NULL,
3033f4259b30SLisandro Dalcin                                         NULL,
3034f4259b30SLisandro Dalcin                                 /*139*/ NULL,
3035f4259b30SLisandro Dalcin                                         NULL,
3036f4259b30SLisandro Dalcin                                         NULL,
3037f4259b30SLisandro Dalcin                                         NULL,
3038f4259b30SLisandro Dalcin                                         NULL,
30394222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
3040f4259b30SLisandro Dalcin                                 /*145*/ NULL,
3041f4259b30SLisandro Dalcin                                         NULL,
3042f4259b30SLisandro Dalcin                                         NULL
3043985db425SBarry Smith };
304490ace30eSBarry Smith 
30454b828684SBarry Smith /*@C
3046fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
3047d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
3048d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
3049289bc588SBarry Smith 
3050d083f849SBarry Smith    Collective
3051db81eaa0SLois Curfman McInnes 
305220563c6bSBarry Smith    Input Parameters:
3053db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
30540c775827SLois Curfman McInnes .  m - number of rows
305518f449edSLois Curfman McInnes .  n - number of columns
30560298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
3057dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
305820563c6bSBarry Smith 
305920563c6bSBarry Smith    Output Parameter:
306044cd7ae7SLois Curfman McInnes .  A - the matrix
306120563c6bSBarry Smith 
3062b259b22eSLois Curfman McInnes    Notes:
306318f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
306418f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
30650298fd71SBarry Smith    set data=NULL.
306618f449edSLois Curfman McInnes 
3067027ccd11SLois Curfman McInnes    Level: intermediate
3068027ccd11SLois Curfman McInnes 
306969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
307020563c6bSBarry Smith @*/
30717087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
3072289bc588SBarry Smith {
3073dfbe8321SBarry Smith   PetscErrorCode ierr;
30743b2fbd54SBarry Smith 
30753a40ed3dSBarry Smith   PetscFunctionBegin;
3076f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3077f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3078273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
3079273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
3080273d9f13SBarry Smith   PetscFunctionReturn(0);
3081273d9f13SBarry Smith }
3082273d9f13SBarry Smith 
3083273d9f13SBarry Smith /*@C
3084273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
3085273d9f13SBarry Smith 
3086d083f849SBarry Smith    Collective
3087273d9f13SBarry Smith 
3088273d9f13SBarry Smith    Input Parameters:
30891c4f3114SJed Brown +  B - the matrix
30900298fd71SBarry Smith -  data - the array (or NULL)
3091273d9f13SBarry Smith 
3092273d9f13SBarry Smith    Notes:
3093273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
3094273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
3095284134d9SBarry Smith    need not call this routine.
3096273d9f13SBarry Smith 
3097273d9f13SBarry Smith    Level: intermediate
3098273d9f13SBarry Smith 
3099ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
3100867c911aSBarry Smith 
3101273d9f13SBarry Smith @*/
31027087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
3103273d9f13SBarry Smith {
31044ac538c5SBarry Smith   PetscErrorCode ierr;
3105a23d5eceSKris Buschelman 
3106a23d5eceSKris Buschelman   PetscFunctionBegin;
3107d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
31084ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
3109a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3110a23d5eceSKris Buschelman }
3111a23d5eceSKris Buschelman 
31127087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
3113a23d5eceSKris Buschelman {
3114ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
3115dfbe8321SBarry Smith   PetscErrorCode ierr;
3116273d9f13SBarry Smith 
3117273d9f13SBarry Smith   PetscFunctionBegin;
3118616b8fbbSStefano Zampini   if (b->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
3119273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
3120a868139aSShri Abhyankar 
312134ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
312234ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
312334ef9618SShri Abhyankar 
3124ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
312586d161a7SShri Abhyankar 
3126ad16ce7aSStefano Zampini   ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr);
31279e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
31289e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3129ad16ce7aSStefano Zampini     ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr);
3130ad16ce7aSStefano Zampini     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
31312205254eSKarl Rupp 
31329e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
3133273d9f13SBarry Smith   } else { /* user-allocated storage */
31349e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3135273d9f13SBarry Smith     b->v          = data;
3136273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
3137273d9f13SBarry Smith   }
31380450473dSBarry Smith   B->assembled = PETSC_TRUE;
3139273d9f13SBarry Smith   PetscFunctionReturn(0);
3140273d9f13SBarry Smith }
3141273d9f13SBarry Smith 
314265b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
3143cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
31448baccfbdSHong Zhang {
3145d77f618aSHong Zhang   Mat               mat_elemental;
3146d77f618aSHong Zhang   PetscErrorCode    ierr;
31471683a169SBarry Smith   const PetscScalar *array;
31481683a169SBarry Smith   PetscScalar       *v_colwise;
3149d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
3150d77f618aSHong Zhang 
31518baccfbdSHong Zhang   PetscFunctionBegin;
3152d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
31531683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr);
3154d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
3155d77f618aSHong Zhang   k = 0;
3156d77f618aSHong Zhang   for (j=0; j<N; j++) {
3157d77f618aSHong Zhang     cols[j] = j;
3158d77f618aSHong Zhang     for (i=0; i<M; i++) {
3159d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
3160d77f618aSHong Zhang     }
3161d77f618aSHong Zhang   }
3162d77f618aSHong Zhang   for (i=0; i<M; i++) {
3163d77f618aSHong Zhang     rows[i] = i;
3164d77f618aSHong Zhang   }
31651683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr);
3166d77f618aSHong Zhang 
3167d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
3168d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
3169d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
3170d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
3171d77f618aSHong Zhang 
3172d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
3173d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
3174d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3175d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3176d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
3177d77f618aSHong Zhang 
3178511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
317928be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
3180d77f618aSHong Zhang   } else {
3181d77f618aSHong Zhang     *newmat = mat_elemental;
3182d77f618aSHong Zhang   }
31838baccfbdSHong Zhang   PetscFunctionReturn(0);
31848baccfbdSHong Zhang }
318565b80a83SHong Zhang #endif
31868baccfbdSHong Zhang 
318717359960SJose E. Roman PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
31881b807ce4Svictorle {
31891b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
31907422da62SJose E. Roman   PetscBool    data;
319121a2c019SBarry Smith 
31921b807ce4Svictorle   PetscFunctionBegin;
31937422da62SJose E. Roman   data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE);
31947422da62SJose E. Roman   if (!b->user_alloc && data && b->lda!=lda) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage");
3195e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
31961b807ce4Svictorle   b->lda = lda;
31971b807ce4Svictorle   PetscFunctionReturn(0);
31981b807ce4Svictorle }
31991b807ce4Svictorle 
3200d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3201d528f656SJakub Kruzik {
3202d528f656SJakub Kruzik   PetscErrorCode ierr;
3203d528f656SJakub Kruzik   PetscMPIInt    size;
3204d528f656SJakub Kruzik 
3205d528f656SJakub Kruzik   PetscFunctionBegin;
3206ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
3207d528f656SJakub Kruzik   if (size == 1) {
3208d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
3209d528f656SJakub Kruzik       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
3210d528f656SJakub Kruzik     } else {
3211d528f656SJakub Kruzik       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
3212d528f656SJakub Kruzik     }
3213d528f656SJakub Kruzik   } else {
3214d528f656SJakub Kruzik     ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
3215d528f656SJakub Kruzik   }
3216d528f656SJakub Kruzik   PetscFunctionReturn(0);
3217d528f656SJakub Kruzik }
3218d528f656SJakub Kruzik 
32196947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32206947451fSStefano Zampini {
32216947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32226947451fSStefano Zampini   PetscErrorCode ierr;
32236947451fSStefano Zampini 
32246947451fSStefano Zampini   PetscFunctionBegin;
32255ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32265ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32276947451fSStefano Zampini   if (!a->cvec) {
32286947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3229616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32306947451fSStefano Zampini   }
32316947451fSStefano Zampini   a->vecinuse = col + 1;
32326947451fSStefano Zampini   ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32336947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32346947451fSStefano Zampini   *v   = a->cvec;
32356947451fSStefano Zampini   PetscFunctionReturn(0);
32366947451fSStefano Zampini }
32376947451fSStefano Zampini 
32386947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32396947451fSStefano Zampini {
32406947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32416947451fSStefano Zampini   PetscErrorCode ierr;
32426947451fSStefano Zampini 
32436947451fSStefano Zampini   PetscFunctionBegin;
32445ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32456947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32466947451fSStefano Zampini   a->vecinuse = 0;
32476947451fSStefano Zampini   ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32486947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32496947451fSStefano Zampini   *v   = NULL;
32506947451fSStefano Zampini   PetscFunctionReturn(0);
32516947451fSStefano Zampini }
32526947451fSStefano Zampini 
32536947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32546947451fSStefano Zampini {
32556947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32566947451fSStefano Zampini   PetscErrorCode ierr;
32576947451fSStefano Zampini 
32586947451fSStefano Zampini   PetscFunctionBegin;
32595ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32605ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32616947451fSStefano Zampini   if (!a->cvec) {
32626947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3263616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32646947451fSStefano Zampini   }
32656947451fSStefano Zampini   a->vecinuse = col + 1;
32666947451fSStefano Zampini   ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32676947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32686947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
32696947451fSStefano Zampini   *v   = a->cvec;
32706947451fSStefano Zampini   PetscFunctionReturn(0);
32716947451fSStefano Zampini }
32726947451fSStefano Zampini 
32736947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32746947451fSStefano Zampini {
32756947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32766947451fSStefano Zampini   PetscErrorCode ierr;
32776947451fSStefano Zampini 
32786947451fSStefano Zampini   PetscFunctionBegin;
32795ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32806947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32816947451fSStefano Zampini   a->vecinuse = 0;
32826947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32836947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
32846947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32856947451fSStefano Zampini   *v   = NULL;
32866947451fSStefano Zampini   PetscFunctionReturn(0);
32876947451fSStefano Zampini }
32886947451fSStefano Zampini 
32896947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
32906947451fSStefano Zampini {
32916947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32926947451fSStefano Zampini   PetscErrorCode ierr;
32936947451fSStefano Zampini 
32946947451fSStefano Zampini   PetscFunctionBegin;
32955ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32965ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32976947451fSStefano Zampini   if (!a->cvec) {
32986947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3299616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
33006947451fSStefano Zampini   }
33016947451fSStefano Zampini   a->vecinuse = col + 1;
33026947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33036947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
33046947451fSStefano Zampini   *v   = a->cvec;
33056947451fSStefano Zampini   PetscFunctionReturn(0);
33066947451fSStefano Zampini }
33076947451fSStefano Zampini 
33086947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
33096947451fSStefano Zampini {
33106947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33116947451fSStefano Zampini   PetscErrorCode ierr;
33126947451fSStefano Zampini 
33136947451fSStefano Zampini   PetscFunctionBegin;
33145ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
33156947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
33166947451fSStefano Zampini   a->vecinuse = 0;
33176947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33186947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
33196947451fSStefano Zampini   *v   = NULL;
33206947451fSStefano Zampini   PetscFunctionReturn(0);
33216947451fSStefano Zampini }
33226947451fSStefano Zampini 
33235ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
33245ea7661aSPierre Jolivet {
33255ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33265ea7661aSPierre Jolivet   PetscErrorCode ierr;
33275ea7661aSPierre Jolivet 
33285ea7661aSPierre Jolivet   PetscFunctionBegin;
33295ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
33305ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
33315ea7661aSPierre Jolivet   if (a->cmat && cend-cbegin != a->cmat->cmap->N) {
33325ea7661aSPierre Jolivet     ierr = MatDestroy(&a->cmat);CHKERRQ(ierr);
33335ea7661aSPierre Jolivet   }
33345ea7661aSPierre Jolivet   if (!a->cmat) {
3335616b8fbbSStefano Zampini     ierr = MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->v + (size_t)cbegin * (size_t)a->lda,&a->cmat);CHKERRQ(ierr);
3336616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr);
33375ea7661aSPierre Jolivet   } else {
3338616b8fbbSStefano Zampini     ierr = MatDensePlaceArray(a->cmat,a->v + (size_t)cbegin * (size_t)a->lda);CHKERRQ(ierr);
33395ea7661aSPierre Jolivet   }
3340616b8fbbSStefano Zampini   ierr = MatDenseSetLDA(a->cmat,a->lda);CHKERRQ(ierr);
33415ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
33425ea7661aSPierre Jolivet   *v = a->cmat;
33435ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33445ea7661aSPierre Jolivet }
33455ea7661aSPierre Jolivet 
33465ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v)
33475ea7661aSPierre Jolivet {
33485ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33495ea7661aSPierre Jolivet   PetscErrorCode ierr;
33505ea7661aSPierre Jolivet 
33515ea7661aSPierre Jolivet   PetscFunctionBegin;
33525ea7661aSPierre Jolivet   if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first");
33535ea7661aSPierre Jolivet   if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix");
3354616b8fbbSStefano Zampini   if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()");
33555ea7661aSPierre Jolivet   a->matinuse = 0;
33565ea7661aSPierre Jolivet   ierr = MatDenseResetArray(a->cmat);CHKERRQ(ierr);
33575ea7661aSPierre Jolivet   *v   = NULL;
33585ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33595ea7661aSPierre Jolivet }
33605ea7661aSPierre Jolivet 
33610bad9183SKris Buschelman /*MC
3362fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
33630bad9183SKris Buschelman 
33640bad9183SKris Buschelman    Options Database Keys:
33650bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
33660bad9183SKris Buschelman 
33670bad9183SKris Buschelman   Level: beginner
33680bad9183SKris Buschelman 
336989665df3SBarry Smith .seealso: MatCreateSeqDense()
337089665df3SBarry Smith 
33710bad9183SKris Buschelman M*/
3372ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
3373273d9f13SBarry Smith {
3374273d9f13SBarry Smith   Mat_SeqDense   *b;
3375dfbe8321SBarry Smith   PetscErrorCode ierr;
33767c334f02SBarry Smith   PetscMPIInt    size;
3377273d9f13SBarry Smith 
3378273d9f13SBarry Smith   PetscFunctionBegin;
3379ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
3380e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
338155659b69SBarry Smith 
3382b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
3383549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
338444cd7ae7SLois Curfman McInnes   B->data = (void*)b;
338518f449edSLois Curfman McInnes 
3386273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
33874e220ebcSLois Curfman McInnes 
33884905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense);CHKERRQ(ierr);
33894905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
33904905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense);CHKERRQ(ierr);
339149a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr);
3392ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr);
3393bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
33948572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3395d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
3396d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
3397d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr);
33988572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
3399715b7558SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
34006947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
34016947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3402bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
34038baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
34048baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
34058baccfbdSHong Zhang #endif
3406d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
3407d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr);
3408d24d4204SJose E. Roman #endif
34092bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
34102bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr);
34114222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34124222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
3413637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34142bf066beSStefano Zampini #endif
3415bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
34164222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
34174222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34184222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
34194222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
342096e6d5c4SRichard Tran Mills 
3421af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr);
3422af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr);
34236947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr);
34246947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr);
34256947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr);
34266947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr);
34276947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr);
34286947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr);
34295ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense);CHKERRQ(ierr);
34305ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense);CHKERRQ(ierr);
343117667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
34323a40ed3dSBarry Smith   PetscFunctionReturn(0);
3433289bc588SBarry Smith }
343486aefd0dSHong Zhang 
343586aefd0dSHong Zhang /*@C
3436af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
343786aefd0dSHong Zhang 
343886aefd0dSHong Zhang    Not Collective
343986aefd0dSHong Zhang 
34405ea7661aSPierre Jolivet    Input Parameters:
344186aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
344286aefd0dSHong Zhang -  col - column index
344386aefd0dSHong Zhang 
344486aefd0dSHong Zhang    Output Parameter:
344586aefd0dSHong Zhang .  vals - pointer to the data
344686aefd0dSHong Zhang 
344786aefd0dSHong Zhang    Level: intermediate
344886aefd0dSHong Zhang 
344986aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
345086aefd0dSHong Zhang @*/
345186aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
345286aefd0dSHong Zhang {
345386aefd0dSHong Zhang   PetscErrorCode ierr;
345486aefd0dSHong Zhang 
345586aefd0dSHong Zhang   PetscFunctionBegin;
3456d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3457d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3458d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
345986aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr);
346086aefd0dSHong Zhang   PetscFunctionReturn(0);
346186aefd0dSHong Zhang }
346286aefd0dSHong Zhang 
346386aefd0dSHong Zhang /*@C
346486aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
346586aefd0dSHong Zhang 
346686aefd0dSHong Zhang    Not Collective
346786aefd0dSHong Zhang 
346886aefd0dSHong Zhang    Input Parameter:
346986aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
347086aefd0dSHong Zhang 
347186aefd0dSHong Zhang    Output Parameter:
347286aefd0dSHong Zhang .  vals - pointer to the data
347386aefd0dSHong Zhang 
347486aefd0dSHong Zhang    Level: intermediate
347586aefd0dSHong Zhang 
347686aefd0dSHong Zhang .seealso: MatDenseGetColumn()
347786aefd0dSHong Zhang @*/
347886aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
347986aefd0dSHong Zhang {
348086aefd0dSHong Zhang   PetscErrorCode ierr;
348186aefd0dSHong Zhang 
348286aefd0dSHong Zhang   PetscFunctionBegin;
3483d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3484d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
348586aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr);
348686aefd0dSHong Zhang   PetscFunctionReturn(0);
348786aefd0dSHong Zhang }
34886947451fSStefano Zampini 
34896947451fSStefano Zampini /*@C
34906947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
34916947451fSStefano Zampini 
34926947451fSStefano Zampini    Collective
34936947451fSStefano Zampini 
34945ea7661aSPierre Jolivet    Input Parameters:
34956947451fSStefano Zampini +  mat - the Mat object
34966947451fSStefano Zampini -  col - the column index
34976947451fSStefano Zampini 
34986947451fSStefano Zampini    Output Parameter:
34996947451fSStefano Zampini .  v - the vector
35006947451fSStefano Zampini 
35016947451fSStefano Zampini    Notes:
35026947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
35036947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
35046947451fSStefano Zampini 
35056947451fSStefano Zampini    Level: intermediate
35066947451fSStefano Zampini 
35076947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35086947451fSStefano Zampini @*/
35096947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
35106947451fSStefano Zampini {
35116947451fSStefano Zampini   PetscErrorCode ierr;
35126947451fSStefano Zampini 
35136947451fSStefano Zampini   PetscFunctionBegin;
35146947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35156947451fSStefano Zampini   PetscValidType(A,1);
35166947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35176947451fSStefano Zampini   PetscValidPointer(v,3);
35186947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35196947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35206947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35216947451fSStefano Zampini   PetscFunctionReturn(0);
35226947451fSStefano Zampini }
35236947451fSStefano Zampini 
35246947451fSStefano Zampini /*@C
35256947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
35266947451fSStefano Zampini 
35276947451fSStefano Zampini    Collective
35286947451fSStefano Zampini 
35295ea7661aSPierre Jolivet    Input Parameters:
35306947451fSStefano Zampini +  mat - the Mat object
35316947451fSStefano Zampini .  col - the column index
35326947451fSStefano Zampini -  v - the Vec object
35336947451fSStefano Zampini 
35346947451fSStefano Zampini    Level: intermediate
35356947451fSStefano Zampini 
35366947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35376947451fSStefano Zampini @*/
35386947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
35396947451fSStefano Zampini {
35406947451fSStefano Zampini   PetscErrorCode ierr;
35416947451fSStefano Zampini 
35426947451fSStefano Zampini   PetscFunctionBegin;
35436947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35446947451fSStefano Zampini   PetscValidType(A,1);
35456947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35466947451fSStefano Zampini   PetscValidPointer(v,3);
35476947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35486947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35496947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35506947451fSStefano Zampini   PetscFunctionReturn(0);
35516947451fSStefano Zampini }
35526947451fSStefano Zampini 
35536947451fSStefano Zampini /*@C
35546947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
35556947451fSStefano Zampini 
35566947451fSStefano Zampini    Collective
35576947451fSStefano Zampini 
35585ea7661aSPierre Jolivet    Input Parameters:
35596947451fSStefano Zampini +  mat - the Mat object
35606947451fSStefano Zampini -  col - the column index
35616947451fSStefano Zampini 
35626947451fSStefano Zampini    Output Parameter:
35636947451fSStefano Zampini .  v - the vector
35646947451fSStefano Zampini 
35656947451fSStefano Zampini    Notes:
35666947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
35676947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
35686947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
35696947451fSStefano Zampini 
35706947451fSStefano Zampini    Level: intermediate
35716947451fSStefano Zampini 
35726947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35736947451fSStefano Zampini @*/
35746947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
35756947451fSStefano Zampini {
35766947451fSStefano Zampini   PetscErrorCode ierr;
35776947451fSStefano Zampini 
35786947451fSStefano Zampini   PetscFunctionBegin;
35796947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35806947451fSStefano Zampini   PetscValidType(A,1);
35816947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35826947451fSStefano Zampini   PetscValidPointer(v,3);
35836947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35846947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35856947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35866947451fSStefano Zampini   PetscFunctionReturn(0);
35876947451fSStefano Zampini }
35886947451fSStefano Zampini 
35896947451fSStefano Zampini /*@C
35906947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
35916947451fSStefano Zampini 
35926947451fSStefano Zampini    Collective
35936947451fSStefano Zampini 
35945ea7661aSPierre Jolivet    Input Parameters:
35956947451fSStefano Zampini +  mat - the Mat object
35966947451fSStefano Zampini .  col - the column index
35976947451fSStefano Zampini -  v - the Vec object
35986947451fSStefano Zampini 
35996947451fSStefano Zampini    Level: intermediate
36006947451fSStefano Zampini 
36016947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
36026947451fSStefano Zampini @*/
36036947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
36046947451fSStefano Zampini {
36056947451fSStefano Zampini   PetscErrorCode ierr;
36066947451fSStefano Zampini 
36076947451fSStefano Zampini   PetscFunctionBegin;
36086947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36096947451fSStefano Zampini   PetscValidType(A,1);
36106947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36116947451fSStefano Zampini   PetscValidPointer(v,3);
36126947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36136947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36146947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36156947451fSStefano Zampini   PetscFunctionReturn(0);
36166947451fSStefano Zampini }
36176947451fSStefano Zampini 
36186947451fSStefano Zampini /*@C
36196947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
36206947451fSStefano Zampini 
36216947451fSStefano Zampini    Collective
36226947451fSStefano Zampini 
36235ea7661aSPierre Jolivet    Input Parameters:
36246947451fSStefano Zampini +  mat - the Mat object
36256947451fSStefano Zampini -  col - the column index
36266947451fSStefano Zampini 
36276947451fSStefano Zampini    Output Parameter:
36286947451fSStefano Zampini .  v - the vector
36296947451fSStefano Zampini 
36306947451fSStefano Zampini    Notes:
36316947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
36326947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
36336947451fSStefano Zampini 
36346947451fSStefano Zampini    Level: intermediate
36356947451fSStefano Zampini 
36366947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
36376947451fSStefano Zampini @*/
36386947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
36396947451fSStefano Zampini {
36406947451fSStefano Zampini   PetscErrorCode ierr;
36416947451fSStefano Zampini 
36426947451fSStefano Zampini   PetscFunctionBegin;
36436947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36446947451fSStefano Zampini   PetscValidType(A,1);
36456947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36466947451fSStefano Zampini   PetscValidPointer(v,3);
36476947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36486947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36496947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36506947451fSStefano Zampini   PetscFunctionReturn(0);
36516947451fSStefano Zampini }
36526947451fSStefano Zampini 
36536947451fSStefano Zampini /*@C
36546947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
36556947451fSStefano Zampini 
36566947451fSStefano Zampini    Collective
36576947451fSStefano Zampini 
36585ea7661aSPierre Jolivet    Input Parameters:
36596947451fSStefano Zampini +  mat - the Mat object
36606947451fSStefano Zampini .  col - the column index
36616947451fSStefano Zampini -  v - the Vec object
36626947451fSStefano Zampini 
36636947451fSStefano Zampini    Level: intermediate
36646947451fSStefano Zampini 
36656947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
36666947451fSStefano Zampini @*/
36676947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
36686947451fSStefano Zampini {
36696947451fSStefano Zampini   PetscErrorCode ierr;
36706947451fSStefano Zampini 
36716947451fSStefano Zampini   PetscFunctionBegin;
36726947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36736947451fSStefano Zampini   PetscValidType(A,1);
36746947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36756947451fSStefano Zampini   PetscValidPointer(v,3);
36766947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36776947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36786947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36796947451fSStefano Zampini   PetscFunctionReturn(0);
36806947451fSStefano Zampini }
36815ea7661aSPierre Jolivet 
36825ea7661aSPierre Jolivet /*@C
36835ea7661aSPierre Jolivet    MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat.
36845ea7661aSPierre Jolivet 
36855ea7661aSPierre Jolivet    Collective
36865ea7661aSPierre Jolivet 
36875ea7661aSPierre Jolivet    Input Parameters:
36885ea7661aSPierre Jolivet +  mat - the Mat object
36895ea7661aSPierre Jolivet .  cbegin - the first index in the block
36905ea7661aSPierre Jolivet -  cend - the last index in the block
36915ea7661aSPierre Jolivet 
36925ea7661aSPierre Jolivet    Output Parameter:
36935ea7661aSPierre Jolivet .  v - the matrix
36945ea7661aSPierre Jolivet 
36955ea7661aSPierre Jolivet    Notes:
36965ea7661aSPierre Jolivet      The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed.
36975ea7661aSPierre Jolivet 
36985ea7661aSPierre Jolivet    Level: intermediate
36995ea7661aSPierre Jolivet 
37005ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseRestoreSubMatrix()
37015ea7661aSPierre Jolivet @*/
37025ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
37035ea7661aSPierre Jolivet {
37045ea7661aSPierre Jolivet   PetscErrorCode ierr;
37055ea7661aSPierre Jolivet 
37065ea7661aSPierre Jolivet   PetscFunctionBegin;
37075ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37085ea7661aSPierre Jolivet   PetscValidType(A,1);
37095ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cbegin,2);
37105ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cend,3);
37115ea7661aSPierre Jolivet   PetscValidPointer(v,4);
37125ea7661aSPierre Jolivet   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
37135ea7661aSPierre Jolivet   if (cbegin < 0 || cbegin > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %D, should be in [0,%D)",cbegin,A->cmap->N);
3714616b8fbbSStefano Zampini   if (cend < cbegin || cend > A->cmap->N) SETERRQ3(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %D, should be in [%D,%D)",cend,cbegin,A->cmap->N);
37155ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v));CHKERRQ(ierr);
37165ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37175ea7661aSPierre Jolivet }
37185ea7661aSPierre Jolivet 
37195ea7661aSPierre Jolivet /*@C
37205ea7661aSPierre Jolivet    MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix().
37215ea7661aSPierre Jolivet 
37225ea7661aSPierre Jolivet    Collective
37235ea7661aSPierre Jolivet 
37245ea7661aSPierre Jolivet    Input Parameters:
37255ea7661aSPierre Jolivet +  mat - the Mat object
37265ea7661aSPierre Jolivet -  v - the Mat object
37275ea7661aSPierre Jolivet 
37285ea7661aSPierre Jolivet    Level: intermediate
37295ea7661aSPierre Jolivet 
37305ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseGetSubMatrix()
37315ea7661aSPierre Jolivet @*/
37325ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v)
37335ea7661aSPierre Jolivet {
37345ea7661aSPierre Jolivet   PetscErrorCode ierr;
37355ea7661aSPierre Jolivet 
37365ea7661aSPierre Jolivet   PetscFunctionBegin;
37375ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37385ea7661aSPierre Jolivet   PetscValidType(A,1);
37395ea7661aSPierre Jolivet   PetscValidPointer(v,2);
37405ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v));CHKERRQ(ierr);
37415ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37425ea7661aSPierre Jolivet }
3743