xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 4ac6704c710c1f28695377ac78b2ce44e2406750)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
16ca15aa20SStefano Zampini   PetscErrorCode ierr;
178c178816SStefano Zampini 
188c178816SStefano Zampini   PetscFunctionBegin;
198c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
20ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
218c178816SStefano Zampini   if (!hermitian) {
228c178816SStefano Zampini     for (k=0;k<n;k++) {
238c178816SStefano Zampini       for (j=k;j<n;j++) {
24ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
258c178816SStefano Zampini       }
268c178816SStefano Zampini     }
278c178816SStefano Zampini   } else {
288c178816SStefano Zampini     for (k=0;k<n;k++) {
298c178816SStefano Zampini       for (j=k;j<n;j++) {
30ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
318c178816SStefano Zampini       }
328c178816SStefano Zampini     }
338c178816SStefano Zampini   }
34ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
358c178816SStefano Zampini   PetscFunctionReturn(0);
368c178816SStefano Zampini }
378c178816SStefano Zampini 
3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
398c178816SStefano Zampini {
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
5400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
558c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
5600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
57ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
588c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
598c178816SStefano Zampini     if (A->spd) {
6000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
618c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
6200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
638c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
658c178816SStefano Zampini     } else if (A->hermitian) {
668c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
678c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
6800121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
698c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7000121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
728c178816SStefano Zampini #endif
738c178816SStefano Zampini     } else { /* symmetric case */
748c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
758c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
7600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
778c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
798c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
808c178816SStefano Zampini     }
818c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
82ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
838c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
848c178816SStefano Zampini 
858c178816SStefano Zampini   A->ops->solve             = NULL;
868c178816SStefano Zampini   A->ops->matsolve          = NULL;
878c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
888c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
898c178816SStefano Zampini   A->ops->solveadd          = NULL;
908c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
918c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
928c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
938c178816SStefano Zampini   PetscFunctionReturn(0);
948c178816SStefano Zampini }
958c178816SStefano Zampini 
963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
973f49a652SStefano Zampini {
983f49a652SStefano Zampini   PetscErrorCode    ierr;
993f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1003f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
101ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
1023f49a652SStefano Zampini   const PetscScalar *xx;
1033f49a652SStefano Zampini 
1043f49a652SStefano Zampini   PetscFunctionBegin;
10576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1063f49a652SStefano Zampini     for (i=0; i<N; i++) {
1073f49a652SStefano Zampini       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1083f49a652SStefano Zampini       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1093f49a652SStefano Zampini       if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1103f49a652SStefano Zampini     }
11176bd3646SJed Brown   }
112ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1133f49a652SStefano Zampini 
1143f49a652SStefano Zampini   /* fix right hand side if needed */
1153f49a652SStefano Zampini   if (x && b) {
1166c4d906cSStefano Zampini     Vec xt;
1176c4d906cSStefano Zampini 
1186c4d906cSStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1196c4d906cSStefano Zampini     ierr = VecDuplicate(x,&xt);CHKERRQ(ierr);
1206c4d906cSStefano Zampini     ierr = VecCopy(x,xt);CHKERRQ(ierr);
1216c4d906cSStefano Zampini     ierr = VecScale(xt,-1.0);CHKERRQ(ierr);
1226c4d906cSStefano Zampini     ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr);
1236c4d906cSStefano Zampini     ierr = VecDestroy(&xt);CHKERRQ(ierr);
1243f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1253f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1263f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1273f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1283f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini 
131ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1323f49a652SStefano Zampini   for (i=0; i<N; i++) {
133ca15aa20SStefano Zampini     slot = v + rows[i]*m;
134580bdb30SBarry Smith     ierr = PetscArrayzero(slot,r);CHKERRQ(ierr);
1353f49a652SStefano Zampini   }
1363f49a652SStefano Zampini   for (i=0; i<N; i++) {
137ca15aa20SStefano Zampini     slot = v + rows[i];
1383f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1393f49a652SStefano Zampini   }
1403f49a652SStefano Zampini   if (diag != 0.0) {
1413f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1423f49a652SStefano Zampini     for (i=0; i<N; i++) {
143ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1443f49a652SStefano Zampini       *slot = diag;
1453f49a652SStefano Zampini     }
1463f49a652SStefano Zampini   }
147ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
1483f49a652SStefano Zampini   PetscFunctionReturn(0);
1493f49a652SStefano Zampini }
1503f49a652SStefano Zampini 
151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
152abc3b08eSStefano Zampini {
153abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
154abc3b08eSStefano Zampini   PetscErrorCode ierr;
155abc3b08eSStefano Zampini 
156abc3b08eSStefano Zampini   PetscFunctionBegin;
157ca15aa20SStefano Zampini   if (c->ptapwork) {
158ca15aa20SStefano Zampini     ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr);
159ca15aa20SStefano Zampini     ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr);
1604222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
161abc3b08eSStefano Zampini   PetscFunctionReturn(0);
162abc3b08eSStefano Zampini }
163abc3b08eSStefano Zampini 
1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
165abc3b08eSStefano Zampini {
166abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1677a3c3d58SStefano Zampini   PetscBool      cisdense;
168abc3b08eSStefano Zampini   PetscErrorCode ierr;
169abc3b08eSStefano Zampini 
170abc3b08eSStefano Zampini   PetscFunctionBegin;
1714222ddf1SHong Zhang   ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr);
1727a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
1737a3c3d58SStefano Zampini   if (!cisdense) {
1747a3c3d58SStefano Zampini     PetscBool flg;
1757a3c3d58SStefano Zampini 
1767a3c3d58SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
1774222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
1787a3c3d58SStefano Zampini   }
1797a3c3d58SStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
1804222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
181ca15aa20SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr);
182ca15aa20SStefano Zampini   ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr);
1837a3c3d58SStefano Zampini   ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr);
1847a3c3d58SStefano Zampini   ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr);
185abc3b08eSStefano Zampini   PetscFunctionReturn(0);
186abc3b08eSStefano Zampini }
187abc3b08eSStefano Zampini 
188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
189b49cda9fSStefano Zampini {
190a13144ffSStefano Zampini   Mat             B = NULL;
191b49cda9fSStefano Zampini   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)A->data;
192b49cda9fSStefano Zampini   Mat_SeqDense    *b;
193b49cda9fSStefano Zampini   PetscErrorCode  ierr;
194b49cda9fSStefano Zampini   PetscInt        *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
1952e5835c6SStefano Zampini   const MatScalar *av;
196a13144ffSStefano Zampini   PetscBool       isseqdense;
197b49cda9fSStefano Zampini 
198b49cda9fSStefano Zampini   PetscFunctionBegin;
199a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
200a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
201a32993e3SJed Brown     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
202a13144ffSStefano Zampini   }
203a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
204b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
205b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
206b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
207b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
208b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
209a13144ffSStefano Zampini   } else {
210a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
211580bdb30SBarry Smith     ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr);
212a13144ffSStefano Zampini   }
2132e5835c6SStefano Zampini   ierr = MatSeqAIJGetArrayRead(A,&av);CHKERRQ(ierr);
214b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
215b49cda9fSStefano Zampini     PetscInt j;
216b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
217b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
218b49cda9fSStefano Zampini       aj++;
219b49cda9fSStefano Zampini       av++;
220b49cda9fSStefano Zampini     }
221b49cda9fSStefano Zampini     ai++;
222b49cda9fSStefano Zampini   }
2232e5835c6SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(A,&av);CHKERRQ(ierr);
224b49cda9fSStefano Zampini 
225511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
226a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22828be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
229b49cda9fSStefano Zampini   } else {
230a13144ffSStefano Zampini     if (B) *newmat = B;
231a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233b49cda9fSStefano Zampini   }
234b49cda9fSStefano Zampini   PetscFunctionReturn(0);
235b49cda9fSStefano Zampini }
236b49cda9fSStefano Zampini 
237cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2386a63e612SBarry Smith {
2396d4ec7b0SPierre Jolivet   Mat            B = NULL;
2406a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2416a63e612SBarry Smith   PetscErrorCode ierr;
2429399e1b8SMatthew G. Knepley   PetscInt       i, j;
2439399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2449399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2456a63e612SBarry Smith 
2466a63e612SBarry Smith   PetscFunctionBegin;
2476d4ec7b0SPierre Jolivet   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2486d4ec7b0SPierre Jolivet   if (reuse != MAT_REUSE_MATRIX) {
249ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2506a63e612SBarry Smith     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2516a63e612SBarry Smith     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2529399e1b8SMatthew G. Knepley     for (j=0; j<A->cmap->n; j++) {
2536d4ec7b0SPierre Jolivet       for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i];
2546a63e612SBarry Smith       aa += a->lda;
2556a63e612SBarry Smith     }
2569399e1b8SMatthew G. Knepley     ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2576d4ec7b0SPierre Jolivet   } else B = *newmat;
2589399e1b8SMatthew G. Knepley   aa = a->v;
2599399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2609399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2616d4ec7b0SPierre Jolivet     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];}
2629399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2639399e1b8SMatthew G. Knepley     aa  += a->lda;
2649399e1b8SMatthew G. Knepley   }
2659399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2666a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2676a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2686a63e612SBarry Smith 
269511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
27028be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2716d4ec7b0SPierre Jolivet   } else if (reuse != MAT_REUSE_MATRIX) *newmat = B;
2726a63e612SBarry Smith   PetscFunctionReturn(0);
2736a63e612SBarry Smith }
2746a63e612SBarry Smith 
275ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2761987afe7SBarry Smith {
2771987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
278ca15aa20SStefano Zampini   const PetscScalar *xv;
279ca15aa20SStefano Zampini   PetscScalar       *yv;
28023fff9afSBarry Smith   PetscBLASInt      N,m,ldax = 0,lday = 0,one = 1;
281efee365bSSatish Balay   PetscErrorCode    ierr;
2823a40ed3dSBarry Smith 
2833a40ed3dSBarry Smith   PetscFunctionBegin;
284ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr);
285ca15aa20SStefano Zampini   ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr);
286c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
287c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
288c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
289c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
290a5ce6ee0Svictorle   if (ldax>m || lday>m) {
291ca15aa20SStefano Zampini     PetscInt j;
292ca15aa20SStefano Zampini 
293d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
294ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
295a5ce6ee0Svictorle     }
296a5ce6ee0Svictorle   } else {
297ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
298a5ce6ee0Svictorle   }
299ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr);
300ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr);
301ca0c957dSBarry Smith   ierr = PetscLogFlops(PetscMax(2.0*N-1,0));CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3031987afe7SBarry Smith }
3041987afe7SBarry Smith 
305e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
306289bc588SBarry Smith {
307ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3083a40ed3dSBarry Smith 
3093a40ed3dSBarry Smith   PetscFunctionBegin;
3104e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
311ca15aa20SStefano Zampini   info->nz_allocated      = N;
312ca15aa20SStefano Zampini   info->nz_used           = N;
313ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
314ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3154e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3167adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3174e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3184e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3194e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3203a40ed3dSBarry Smith   PetscFunctionReturn(0);
321289bc588SBarry Smith }
322289bc588SBarry Smith 
323637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
32480cd9d93SLois Curfman McInnes {
325273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
326ca15aa20SStefano Zampini   PetscScalar    *v;
327efee365bSSatish Balay   PetscErrorCode ierr;
32823fff9afSBarry Smith   PetscBLASInt   one = 1,j,nz,lda = 0;
32980cd9d93SLois Curfman McInnes 
3303a40ed3dSBarry Smith   PetscFunctionBegin;
331ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
332c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
333d0f46423SBarry Smith   if (lda>A->rmap->n) {
334c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
335d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
336ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
337a5ce6ee0Svictorle     }
338a5ce6ee0Svictorle   } else {
339c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
340ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
341a5ce6ee0Svictorle   }
342efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
343ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
3443a40ed3dSBarry Smith   PetscFunctionReturn(0);
34580cd9d93SLois Curfman McInnes }
34680cd9d93SLois Curfman McInnes 
347e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3481cbb95d3SBarry Smith {
3491cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
350ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
351ca15aa20SStefano Zampini   const PetscScalar *v;
352ca15aa20SStefano Zampini   PetscErrorCode    ierr;
3531cbb95d3SBarry Smith 
3541cbb95d3SBarry Smith   PetscFunctionBegin;
3551cbb95d3SBarry Smith   *fl = PETSC_FALSE;
356d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
357ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
3581cbb95d3SBarry Smith   for (i=0; i<m; i++) {
359ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
360637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
361637a0070SStefano Zampini         goto restore;
3621cbb95d3SBarry Smith       }
3631cbb95d3SBarry Smith     }
364637a0070SStefano Zampini   }
3651cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
366637a0070SStefano Zampini restore:
367637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
368637a0070SStefano Zampini   PetscFunctionReturn(0);
369637a0070SStefano Zampini }
370637a0070SStefano Zampini 
371637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
372637a0070SStefano Zampini {
373637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
374637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
375637a0070SStefano Zampini   const PetscScalar *v;
376637a0070SStefano Zampini   PetscErrorCode    ierr;
377637a0070SStefano Zampini 
378637a0070SStefano Zampini   PetscFunctionBegin;
379637a0070SStefano Zampini   *fl = PETSC_FALSE;
380637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
381637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
382637a0070SStefano Zampini   for (i=0; i<m; i++) {
383637a0070SStefano Zampini     for (j=i; j<m; j++) {
384637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
385637a0070SStefano Zampini         goto restore;
386637a0070SStefano Zampini       }
387637a0070SStefano Zampini     }
388637a0070SStefano Zampini   }
389637a0070SStefano Zampini   *fl  = PETSC_TRUE;
390637a0070SStefano Zampini restore:
391637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
3921cbb95d3SBarry Smith   PetscFunctionReturn(0);
3931cbb95d3SBarry Smith }
3941cbb95d3SBarry Smith 
395ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
396b24902e0SBarry Smith {
397ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
398b24902e0SBarry Smith   PetscErrorCode ierr;
39923fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
400b24902e0SBarry Smith 
401b24902e0SBarry Smith   PetscFunctionBegin;
402aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
403aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
40423fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
40523fc5dcaSStefano Zampini     ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr);
40623fc5dcaSStefano Zampini   }
4070298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
408b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
409ca15aa20SStefano Zampini     const PetscScalar *av;
410ca15aa20SStefano Zampini     PetscScalar       *v;
411ca15aa20SStefano Zampini 
412ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
413ca15aa20SStefano Zampini     ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr);
41423fc5dcaSStefano Zampini     ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr);
415d0f46423SBarry Smith     m    = A->rmap->n;
41623fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
417d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
41823fc5dcaSStefano Zampini         ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr);
419b24902e0SBarry Smith       }
420b24902e0SBarry Smith     } else {
421ca15aa20SStefano Zampini       ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
422b24902e0SBarry Smith     }
423ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr);
424ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
425b24902e0SBarry Smith   }
426b24902e0SBarry Smith   PetscFunctionReturn(0);
427b24902e0SBarry Smith }
428b24902e0SBarry Smith 
429ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
43002cad45dSBarry Smith {
4316849ba73SBarry Smith   PetscErrorCode ierr;
43202cad45dSBarry Smith 
4333a40ed3dSBarry Smith   PetscFunctionBegin;
434ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
435d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
4365c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
437719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
438b24902e0SBarry Smith   PetscFunctionReturn(0);
439b24902e0SBarry Smith }
440b24902e0SBarry Smith 
4414396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
442289bc588SBarry Smith {
443c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4444396437dSToby Isaac   PetscBLASInt    info;
4456849ba73SBarry Smith   PetscErrorCode  ierr;
44667e560aaSBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
44800121966SStefano Zampini   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4494396437dSToby Isaac   PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
45000121966SStefano Zampini   ierr = PetscFPTrapPop();CHKERRQ(ierr);
45185e2c93fSHong Zhang   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
4524905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4534396437dSToby Isaac   PetscFunctionReturn(0);
4544396437dSToby Isaac }
4554396437dSToby Isaac 
4564396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat);
4574396437dSToby Isaac 
4584396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
4594396437dSToby Isaac {
4604396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4614396437dSToby Isaac   PetscBLASInt    info;
4624396437dSToby Isaac   PetscErrorCode  ierr;
4634396437dSToby Isaac 
4644396437dSToby Isaac   PetscFunctionBegin;
465a49dc2a2SStefano Zampini   if (A->spd) {
4664396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
46700121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4688b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
46900121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
47085e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
4714396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
472a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
473a49dc2a2SStefano Zampini   } else if (A->hermitian) {
4744396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
47500121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
476a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
47700121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
478a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
4794396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
480a49dc2a2SStefano Zampini #endif
481a49dc2a2SStefano Zampini   } else { /* symmetric case */
48200121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
483a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
48400121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
485a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
486a49dc2a2SStefano Zampini   }
4874905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4884396437dSToby Isaac   PetscFunctionReturn(0);
4894396437dSToby Isaac }
49085e2c93fSHong Zhang 
4914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
4924396437dSToby Isaac {
4934396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4944396437dSToby Isaac   PetscBLASInt    info;
4954396437dSToby Isaac   char            trans;
4964396437dSToby Isaac   PetscErrorCode  ierr;
4974396437dSToby Isaac 
4984396437dSToby Isaac   PetscFunctionBegin;
4994905a7bcSToby Isaac   if (PetscDefined(USE_COMPLEX)) {
5004905a7bcSToby Isaac     trans = 'C';
5014905a7bcSToby Isaac   } else {
5024905a7bcSToby Isaac     trans = 'T';
5034905a7bcSToby Isaac   }
5044905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5054905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5064905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5074905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5084905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5094905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5104905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5114905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5124905a7bcSToby Isaac   for (PetscInt j = 0; j < nrhs; j++) {
5134905a7bcSToby Isaac     for (PetscInt i = mat->rank; i < k; i++) {
5144905a7bcSToby Isaac       x[j*xlda + i] = 0.;
5154905a7bcSToby Isaac     }
5164905a7bcSToby Isaac   }
5174905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5184905a7bcSToby Isaac   PetscFunctionReturn(0);
5194905a7bcSToby Isaac }
5204905a7bcSToby Isaac 
5214396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
5224905a7bcSToby Isaac {
5234396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
5244396437dSToby Isaac   PetscBLASInt      info;
5254905a7bcSToby Isaac   PetscErrorCode    ierr;
5264396437dSToby Isaac 
5274396437dSToby Isaac   PetscFunctionBegin;
5284396437dSToby Isaac   if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) {
5294396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5304396437dSToby Isaac     PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5314396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5324396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5334396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5344396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5354396437dSToby Isaac     PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5364396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5374396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5384396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5394396437dSToby Isaac   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve");
5404396437dSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5414396437dSToby Isaac   PetscFunctionReturn(0);
5424396437dSToby Isaac }
5434396437dSToby Isaac 
5444396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5454396437dSToby Isaac {
5464396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense *) A->data;
5474905a7bcSToby Isaac   PetscScalar       *y;
5484905a7bcSToby Isaac   PetscBLASInt      m=0, k=0;
5494396437dSToby Isaac   PetscErrorCode    ierr;
5504905a7bcSToby Isaac 
5514905a7bcSToby Isaac   PetscFunctionBegin;
5524905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
5534905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
5544905a7bcSToby Isaac   if (k < m) {
5554396437dSToby Isaac     ierr = VecCopy(xx, mat->qrrhs);CHKERRQ(ierr);
5564396437dSToby Isaac     ierr = VecGetArray(mat->qrrhs,&y);CHKERRQ(ierr);
5574905a7bcSToby Isaac   } else {
5584396437dSToby Isaac     ierr = VecCopy(xx, yy);CHKERRQ(ierr);
5594905a7bcSToby Isaac     ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
5604905a7bcSToby Isaac   }
5614396437dSToby Isaac   *_y = y;
5624396437dSToby Isaac   *_k = k;
5634396437dSToby Isaac   *_m = m;
5644396437dSToby Isaac   PetscFunctionReturn(0);
5654396437dSToby Isaac }
5664396437dSToby Isaac 
5674396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5684396437dSToby Isaac {
5694396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
57042e9364cSSatish Balay   PetscScalar    *y = NULL;
5714396437dSToby Isaac   PetscBLASInt   m, k;
5724396437dSToby Isaac   PetscErrorCode ierr;
5734396437dSToby Isaac 
5744396437dSToby Isaac   PetscFunctionBegin;
5754396437dSToby Isaac   y   = *_y;
5764396437dSToby Isaac   *_y = NULL;
5774396437dSToby Isaac   k   = *_k;
5784396437dSToby Isaac   m   = *_m;
5794905a7bcSToby Isaac   if (k < m) {
5804905a7bcSToby Isaac     PetscScalar *yv;
5814905a7bcSToby Isaac     ierr = VecGetArray(yy,&yv);CHKERRQ(ierr);
5824905a7bcSToby Isaac     ierr = PetscArraycpy(yv, y, k);CHKERRQ(ierr);
5834905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&yv);CHKERRQ(ierr);
5844396437dSToby Isaac     ierr = VecRestoreArray(mat->qrrhs, &y);CHKERRQ(ierr);
5854905a7bcSToby Isaac   } else {
5864905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
5874905a7bcSToby Isaac   }
5884905a7bcSToby Isaac   PetscFunctionReturn(0);
5894905a7bcSToby Isaac }
5904905a7bcSToby Isaac 
5914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy)
5924396437dSToby Isaac {
59342e9364cSSatish Balay   PetscScalar    *y = NULL;
59442e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
5954396437dSToby Isaac   PetscErrorCode ierr;
5964396437dSToby Isaac 
5974396437dSToby Isaac   PetscFunctionBegin;
5984396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
5994396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6004396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6014396437dSToby Isaac   PetscFunctionReturn(0);
6024396437dSToby Isaac }
6034396437dSToby Isaac 
6044396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy)
6054396437dSToby Isaac {
60642e9364cSSatish Balay   PetscScalar    *y = NULL;
60742e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6084396437dSToby Isaac   PetscErrorCode ierr;
6094396437dSToby Isaac 
6104396437dSToby Isaac   PetscFunctionBegin;
6114396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6124396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6134396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6144396437dSToby Isaac   PetscFunctionReturn(0);
6154396437dSToby Isaac }
6164396437dSToby Isaac 
6174396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6184396437dSToby Isaac {
619e54beecaSStefano Zampini   PetscScalar    *y = NULL;
620e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6214396437dSToby Isaac   PetscErrorCode ierr;
6224396437dSToby Isaac 
6234396437dSToby Isaac   PetscFunctionBegin;
6244396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6254396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6264396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6274396437dSToby Isaac   PetscFunctionReturn(0);
6284396437dSToby Isaac }
6294396437dSToby Isaac 
6304396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6314396437dSToby Isaac {
632e54beecaSStefano Zampini   PetscScalar    *y = NULL;
633e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6344396437dSToby Isaac   PetscErrorCode ierr;
6354396437dSToby Isaac 
6364396437dSToby Isaac   PetscFunctionBegin;
6374396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6384396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6394396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6404396437dSToby Isaac   PetscFunctionReturn(0);
6414396437dSToby Isaac }
6424396437dSToby Isaac 
6434396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy)
6444396437dSToby Isaac {
645e54beecaSStefano Zampini   PetscScalar    *y = NULL;
646e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6474396437dSToby Isaac   PetscErrorCode ierr;
6484396437dSToby Isaac 
6494396437dSToby Isaac   PetscFunctionBegin;
6504396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6514396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6524396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6534396437dSToby Isaac   PetscFunctionReturn(0);
6544396437dSToby Isaac }
6554396437dSToby Isaac 
6564396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy)
6574396437dSToby Isaac {
65842e9364cSSatish Balay   PetscScalar    *y = NULL;
65942e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6604396437dSToby Isaac   PetscErrorCode ierr;
6614396437dSToby Isaac 
6624396437dSToby Isaac   PetscFunctionBegin;
6634396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6644396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6654396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6664396437dSToby Isaac   PetscFunctionReturn(0);
6674396437dSToby Isaac }
6684396437dSToby Isaac 
6694396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
6704905a7bcSToby Isaac {
6714905a7bcSToby Isaac   PetscErrorCode    ierr;
6724905a7bcSToby Isaac   const PetscScalar *b;
6734396437dSToby Isaac   PetscScalar       *y;
6744905a7bcSToby Isaac   PetscInt          n, _blda, _xlda;
6754396437dSToby Isaac   PetscBLASInt      nrhs=0,m=0,k=0,blda=0,xlda=0,ylda=0;
6764905a7bcSToby Isaac 
6774905a7bcSToby Isaac   PetscFunctionBegin;
67837b8ee88SJose E. Roman   *_ylda=0; *_m=0; *_nrhs=0; *_k=0;
6794905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
6804905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
6814905a7bcSToby Isaac   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
6824905a7bcSToby Isaac   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
6834905a7bcSToby Isaac   ierr = MatDenseGetLDA(B,&_blda);CHKERRQ(ierr);
6844905a7bcSToby Isaac   ierr = PetscBLASIntCast(_blda, &blda);CHKERRQ(ierr);
6854905a7bcSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
6864905a7bcSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
6874905a7bcSToby Isaac   if (xlda < m) {
6884396437dSToby Isaac     ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
6894396437dSToby Isaac     ierr = PetscMalloc1(nrhs * m, &y);CHKERRQ(ierr);
6904905a7bcSToby Isaac     if (blda == m) {
6914396437dSToby Isaac       ierr = PetscArraycpy(y,b,blda*nrhs);CHKERRQ(ierr);
6924905a7bcSToby Isaac     } else {
6934905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
6944396437dSToby Isaac         ierr = PetscArraycpy(&y[j*m],&b[j*blda],m);CHKERRQ(ierr);
6954905a7bcSToby Isaac       }
6964905a7bcSToby Isaac     }
6974396437dSToby Isaac     ylda = m;
6984396437dSToby Isaac     ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
6994905a7bcSToby Isaac   } else {
7004905a7bcSToby Isaac     if (blda == xlda) {
7014396437dSToby Isaac       ierr = MatCopy(B, X, SAME_NONZERO_PATTERN);CHKERRQ(ierr);
7024396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7034905a7bcSToby Isaac     } else {
7044396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7054396437dSToby Isaac       ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
7064905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
7074396437dSToby Isaac         ierr = PetscArraycpy(&y[j*xlda],&b[j*blda],m);CHKERRQ(ierr);
7084905a7bcSToby Isaac       }
7094396437dSToby Isaac       ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
7104905a7bcSToby Isaac     }
7114396437dSToby Isaac     ylda = xlda;
7124905a7bcSToby Isaac   }
7134396437dSToby Isaac   *_y    = y;
7144396437dSToby Isaac   *_ylda = ylda;
7154396437dSToby Isaac   *_k    = k;
7164396437dSToby Isaac   *_m    = m;
7174396437dSToby Isaac   *_nrhs = nrhs;
7184396437dSToby Isaac   PetscFunctionReturn(0);
7194396437dSToby Isaac }
7204396437dSToby Isaac 
7214396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
7224396437dSToby Isaac {
7234396437dSToby Isaac   PetscScalar       *y;
7244396437dSToby Isaac   PetscInt          _xlda;
7254396437dSToby Isaac   PetscBLASInt      k,ylda,nrhs,xlda=0;
7264396437dSToby Isaac   PetscErrorCode    ierr;
7274396437dSToby Isaac 
7284396437dSToby Isaac   PetscFunctionBegin;
7294396437dSToby Isaac   y    = *_y;
7304396437dSToby Isaac   *_y  = NULL;
7314396437dSToby Isaac   k    = *_k;
7324396437dSToby Isaac   ylda = *_ylda;
7334396437dSToby Isaac   nrhs = *_nrhs;
7344396437dSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
7354396437dSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
7364396437dSToby Isaac   if (xlda != ylda) {
7374905a7bcSToby Isaac     PetscScalar *xv;
7384905a7bcSToby Isaac     ierr = MatDenseGetArray(X,&xv);CHKERRQ(ierr);
7394905a7bcSToby Isaac     for (PetscInt j = 0; j < nrhs; j++) {
7404396437dSToby Isaac       ierr = PetscArraycpy(&xv[j*xlda],&y[j*ylda],k);CHKERRQ(ierr);
7414905a7bcSToby Isaac     }
7424905a7bcSToby Isaac     ierr = MatDenseRestoreArray(X,&xv);CHKERRQ(ierr);
7434396437dSToby Isaac     ierr = PetscFree(y);CHKERRQ(ierr);
7444905a7bcSToby Isaac   } else {
7454396437dSToby Isaac     ierr = MatDenseRestoreArray(X,&y);CHKERRQ(ierr);
7464905a7bcSToby Isaac   }
74785e2c93fSHong Zhang   PetscFunctionReturn(0);
74885e2c93fSHong Zhang }
74985e2c93fSHong Zhang 
7504396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X)
7514396437dSToby Isaac {
7524396437dSToby Isaac   PetscScalar    *y;
7534396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7544396437dSToby Isaac   PetscErrorCode ierr;
7554396437dSToby Isaac 
7564396437dSToby Isaac   PetscFunctionBegin;
7574396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7584396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7594396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7604396437dSToby Isaac   PetscFunctionReturn(0);
7614396437dSToby Isaac }
7624396437dSToby Isaac 
7634396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X)
7644396437dSToby Isaac {
7654396437dSToby Isaac   PetscScalar    *y;
7664396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7674396437dSToby Isaac   PetscErrorCode ierr;
7684396437dSToby Isaac 
7694396437dSToby Isaac   PetscFunctionBegin;
7704396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7714396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7724396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7734396437dSToby Isaac   PetscFunctionReturn(0);
7744396437dSToby Isaac }
7754396437dSToby Isaac 
7764396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7774396437dSToby Isaac {
7784396437dSToby Isaac   PetscScalar    *y;
7794396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7804396437dSToby Isaac   PetscErrorCode ierr;
7814396437dSToby Isaac 
7824396437dSToby Isaac   PetscFunctionBegin;
7834396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7844396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7854396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7864396437dSToby Isaac   PetscFunctionReturn(0);
7874396437dSToby Isaac }
7884396437dSToby Isaac 
7894396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7904396437dSToby Isaac {
7914396437dSToby Isaac   PetscScalar    *y;
7924396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7934396437dSToby Isaac   PetscErrorCode ierr;
7944396437dSToby Isaac 
7954396437dSToby Isaac   PetscFunctionBegin;
7964396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7974396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7984396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7994396437dSToby Isaac   PetscFunctionReturn(0);
8004396437dSToby Isaac }
8014396437dSToby Isaac 
8024396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X)
8034396437dSToby Isaac {
8044396437dSToby Isaac   PetscScalar    *y;
8054396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8064396437dSToby Isaac   PetscErrorCode ierr;
8074396437dSToby Isaac 
8084396437dSToby Isaac   PetscFunctionBegin;
8094396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8104396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8114396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8124396437dSToby Isaac   PetscFunctionReturn(0);
8134396437dSToby Isaac }
8144396437dSToby Isaac 
8154396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X)
8164396437dSToby Isaac {
8174396437dSToby Isaac   PetscScalar    *y;
8184396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8194396437dSToby Isaac   PetscErrorCode ierr;
8204396437dSToby Isaac 
8214396437dSToby Isaac   PetscFunctionBegin;
8224396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8234396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8244396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8254396437dSToby Isaac   PetscFunctionReturn(0);
8264396437dSToby Isaac }
8274396437dSToby Isaac 
82800121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat);
82900121966SStefano Zampini 
830db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
831db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
832db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
833ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
834db4efbfdSBarry Smith {
835db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
836db4efbfdSBarry Smith   PetscErrorCode ierr;
837db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
838db4efbfdSBarry Smith 
839db4efbfdSBarry Smith   PetscFunctionBegin;
840c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
841c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
842db4efbfdSBarry Smith   if (!mat->pivots) {
8438208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
8443bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
845db4efbfdSBarry Smith   }
846db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
8478e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
8488b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
8498e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
8508e57ea43SSatish Balay 
851e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
852e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
8538208b9aeSStefano Zampini 
8544396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_LU;
8554396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_LU;
8564396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8574396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU;
858d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
859db4efbfdSBarry Smith 
860f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
861f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
862f6224b95SHong Zhang 
863dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
864db4efbfdSBarry Smith   PetscFunctionReturn(0);
865db4efbfdSBarry Smith }
866db4efbfdSBarry Smith 
8674396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
8684396437dSToby Isaac {
8694396437dSToby Isaac   MatFactorInfo  info;
8704396437dSToby Isaac   PetscErrorCode ierr;
8714396437dSToby Isaac 
8724396437dSToby Isaac   PetscFunctionBegin;
8734396437dSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
8744396437dSToby Isaac   ierr = (*fact->ops->lufactor)(fact,NULL,NULL,&info);CHKERRQ(ierr);
8754396437dSToby Isaac   PetscFunctionReturn(0);
8764396437dSToby Isaac }
8774396437dSToby Isaac 
8784396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
8794396437dSToby Isaac {
8804396437dSToby Isaac   PetscFunctionBegin;
8814396437dSToby Isaac   fact->preallocated           = PETSC_TRUE;
8824396437dSToby Isaac   fact->assembled              = PETSC_TRUE;
8834396437dSToby Isaac   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
8844396437dSToby Isaac   fact->ops->solve             = MatSolve_SeqDense_LU;
8854396437dSToby Isaac   fact->ops->matsolve          = MatMatSolve_SeqDense_LU;
8864396437dSToby Isaac   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8874396437dSToby Isaac   PetscFunctionReturn(0);
8884396437dSToby Isaac }
8894396437dSToby Isaac 
890a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
891ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
892db4efbfdSBarry Smith {
893db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
894db4efbfdSBarry Smith   PetscErrorCode ierr;
895c5df96a5SBarry Smith   PetscBLASInt   info,n;
896db4efbfdSBarry Smith 
897db4efbfdSBarry Smith   PetscFunctionBegin;
898c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
899db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
900a49dc2a2SStefano Zampini   if (A->spd) {
90100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
9028b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
90300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
904a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
905a49dc2a2SStefano Zampini   } else if (A->hermitian) {
906a49dc2a2SStefano Zampini     if (!mat->pivots) {
907a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
908a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
909a49dc2a2SStefano Zampini     }
910a49dc2a2SStefano Zampini     if (!mat->fwork) {
911a49dc2a2SStefano Zampini       PetscScalar dummy;
912a49dc2a2SStefano Zampini 
913a49dc2a2SStefano Zampini       mat->lfwork = -1;
91400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
915a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
91600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
917a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
918a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
919a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
920a49dc2a2SStefano Zampini     }
92100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
922a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
92300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
924a49dc2a2SStefano Zampini #endif
925a49dc2a2SStefano Zampini   } else { /* symmetric case */
926a49dc2a2SStefano Zampini     if (!mat->pivots) {
927a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
928a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
929a49dc2a2SStefano Zampini     }
930a49dc2a2SStefano Zampini     if (!mat->fwork) {
931a49dc2a2SStefano Zampini       PetscScalar dummy;
932a49dc2a2SStefano Zampini 
933a49dc2a2SStefano Zampini       mat->lfwork = -1;
93400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
935a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
93600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
937a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
938a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
939a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
940a49dc2a2SStefano Zampini     }
94100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
942a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
94300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
944a49dc2a2SStefano Zampini   }
945e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
9468208b9aeSStefano Zampini 
9474396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_Cholesky;
9484396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_Cholesky;
9494396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_Cholesky;
9504396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky;
951d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
9522205254eSKarl Rupp 
953f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
954f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
955f6224b95SHong Zhang 
956eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
957db4efbfdSBarry Smith   PetscFunctionReturn(0);
958db4efbfdSBarry Smith }
959db4efbfdSBarry Smith 
9604396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
961db4efbfdSBarry Smith {
962db4efbfdSBarry Smith   PetscErrorCode ierr;
963db4efbfdSBarry Smith   MatFactorInfo  info;
964db4efbfdSBarry Smith 
965db4efbfdSBarry Smith   PetscFunctionBegin;
966db4efbfdSBarry Smith   info.fill = 1.0;
9672205254eSKarl Rupp 
968c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
969f4259b30SLisandro Dalcin   ierr = (*fact->ops->choleskyfactor)(fact,NULL,&info);CHKERRQ(ierr);
970db4efbfdSBarry Smith   PetscFunctionReturn(0);
971db4efbfdSBarry Smith }
972db4efbfdSBarry Smith 
973ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
974db4efbfdSBarry Smith {
975db4efbfdSBarry Smith   PetscFunctionBegin;
976c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
9771bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
978719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
9794396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_Cholesky;
9804396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_Cholesky;
9814396437dSToby Isaac   fact->ops->solvetranspose        = MatSolve_SeqDense_Cholesky;
982db4efbfdSBarry Smith   PetscFunctionReturn(0);
983db4efbfdSBarry Smith }
984db4efbfdSBarry Smith 
9854905a7bcSToby Isaac static PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo)
9864905a7bcSToby Isaac {
9874905a7bcSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9884905a7bcSToby Isaac   PetscErrorCode ierr;
9894905a7bcSToby Isaac   PetscBLASInt   n,m,info, min, max;
9904905a7bcSToby Isaac 
9914905a7bcSToby Isaac   PetscFunctionBegin;
9924905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
9934905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
9944396437dSToby Isaac   max = PetscMax(m, n);
9954396437dSToby Isaac   min = PetscMin(m, n);
9964905a7bcSToby Isaac   if (!mat->tau) {
9974396437dSToby Isaac     ierr = PetscMalloc1(min,&mat->tau);CHKERRQ(ierr);
9984396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar));CHKERRQ(ierr);
9994396437dSToby Isaac   }
10004396437dSToby Isaac   if (!mat->pivots) {
10014396437dSToby Isaac     ierr = PetscMalloc1(m,&mat->pivots);CHKERRQ(ierr);
10024396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscScalar));CHKERRQ(ierr);
10034396437dSToby Isaac   }
10044396437dSToby Isaac   if (!mat->qrrhs) {
10054396437dSToby Isaac     ierr = MatCreateVecs(A, NULL, &(mat->qrrhs));CHKERRQ(ierr);
10064905a7bcSToby Isaac   }
10074905a7bcSToby Isaac   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
10084905a7bcSToby Isaac   if (!mat->fwork) {
10094905a7bcSToby Isaac     PetscScalar dummy;
10104905a7bcSToby Isaac 
10114905a7bcSToby Isaac     mat->lfwork = -1;
10124905a7bcSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10134905a7bcSToby Isaac     PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info));
10144905a7bcSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
10154905a7bcSToby Isaac     mat->lfwork = (PetscInt)PetscRealPart(dummy);
10164905a7bcSToby Isaac     ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
10174905a7bcSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
10184905a7bcSToby Isaac   }
10194905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10204905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info));
10214905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
10224905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization");
10234905a7bcSToby Isaac   // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR.  For now just say rank is min of m and n
10244905a7bcSToby Isaac   mat->rank = min;
10254905a7bcSToby Isaac 
10264396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_QR;
10274396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_QR;
10284905a7bcSToby Isaac   A->factortype             = MAT_FACTOR_QR;
10294905a7bcSToby Isaac   if (m == n) {
10304396437dSToby Isaac     A->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10314396437dSToby Isaac     A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10324905a7bcSToby Isaac   }
10334905a7bcSToby Isaac 
10344905a7bcSToby Isaac   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
10354905a7bcSToby Isaac   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
10364905a7bcSToby Isaac 
10374905a7bcSToby Isaac   ierr = PetscLogFlops(2.0*min*min*(max-min/3.0));CHKERRQ(ierr);
10384905a7bcSToby Isaac   PetscFunctionReturn(0);
10394905a7bcSToby Isaac }
10404905a7bcSToby Isaac 
10414905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
10424905a7bcSToby Isaac {
10434905a7bcSToby Isaac   PetscErrorCode ierr;
10444905a7bcSToby Isaac   MatFactorInfo  info;
10454905a7bcSToby Isaac 
10464905a7bcSToby Isaac   PetscFunctionBegin;
10474905a7bcSToby Isaac   info.fill = 1.0;
10484905a7bcSToby Isaac 
10494905a7bcSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
10504905a7bcSToby Isaac   ierr = MatQRFactor_SeqDense(fact,NULL,&info);CHKERRQ(ierr);
10514905a7bcSToby Isaac   PetscFunctionReturn(0);
10524905a7bcSToby Isaac }
10534905a7bcSToby Isaac 
10544905a7bcSToby Isaac static PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
10554905a7bcSToby Isaac {
10564905a7bcSToby Isaac   PetscErrorCode ierr;
10574905a7bcSToby Isaac 
10584905a7bcSToby Isaac   PetscFunctionBegin;
10594905a7bcSToby Isaac   fact->assembled                  = PETSC_TRUE;
10604905a7bcSToby Isaac   fact->preallocated               = PETSC_TRUE;
10614396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_QR;
10624396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_QR;
10634396437dSToby Isaac   if (A->cmap->n == A->rmap->n) {
10644396437dSToby Isaac     fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10654396437dSToby Isaac     fact->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10664396437dSToby Isaac   }
10674905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
10684905a7bcSToby Isaac   PetscFunctionReturn(0);
10694905a7bcSToby Isaac }
10704905a7bcSToby Isaac 
10714905a7bcSToby Isaac 
1072ca15aa20SStefano Zampini /* uses LAPACK */
1073cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
1074db4efbfdSBarry Smith {
1075db4efbfdSBarry Smith   PetscErrorCode ierr;
1076db4efbfdSBarry Smith 
1077db4efbfdSBarry Smith   PetscFunctionBegin;
1078ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
1079db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1080ca15aa20SStefano Zampini   ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr);
10812a350339SBarry Smith   if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) {
1082db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
10832a350339SBarry Smith     (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense;
1084db4efbfdSBarry Smith   } else {
1085db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
1086db4efbfdSBarry Smith   }
1087d5f3da31SBarry Smith   (*fact)->factortype = ftype;
108800c67f3bSHong Zhang 
108900c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
109000c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
1091*4ac6704cSBarry Smith   ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_LU]);CHKERRQ(ierr);
1092*4ac6704cSBarry Smith   ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ILU]);CHKERRQ(ierr);
1093*4ac6704cSBarry Smith   ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY]);CHKERRQ(ierr);
1094*4ac6704cSBarry Smith   ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ICC]);CHKERRQ(ierr);
1095db4efbfdSBarry Smith   PetscFunctionReturn(0);
1096db4efbfdSBarry Smith }
1097db4efbfdSBarry Smith 
1098289bc588SBarry Smith /* ------------------------------------------------------------------*/
1099e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
1100289bc588SBarry Smith {
1101c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1102d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
1103d9ca1df4SBarry Smith   const PetscScalar *b;
1104dfbe8321SBarry Smith   PetscErrorCode    ierr;
1105d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
110623fff9afSBarry Smith   PetscBLASInt      o = 1,bm = 0;
1107289bc588SBarry Smith 
11083a40ed3dSBarry Smith   PetscFunctionBegin;
1109ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1110c70f7ee4SJunchao Zhang   if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
1111ca15aa20SStefano Zampini #endif
1112422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
1113c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
1114289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
11153bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
11162dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
1117289bc588SBarry Smith   }
11181ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1119d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1120b965ef7fSBarry Smith   its  = its*lits;
1121e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1122289bc588SBarry Smith   while (its--) {
1123fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1124289bc588SBarry Smith       for (i=0; i<m; i++) {
11253bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
112655a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1127289bc588SBarry Smith       }
1128289bc588SBarry Smith     }
1129fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1130289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
11313bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
113255a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1133289bc588SBarry Smith       }
1134289bc588SBarry Smith     }
1135289bc588SBarry Smith   }
1136d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
11371ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
11383a40ed3dSBarry Smith   PetscFunctionReturn(0);
1139289bc588SBarry Smith }
1140289bc588SBarry Smith 
1141289bc588SBarry Smith /* -----------------------------------------------------------------*/
1142ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
1143289bc588SBarry Smith {
1144c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1145d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
1146d9ca1df4SBarry Smith   PetscScalar       *y;
1147dfbe8321SBarry Smith   PetscErrorCode    ierr;
11480805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
1149ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
11503a40ed3dSBarry Smith 
11513a40ed3dSBarry Smith   PetscFunctionBegin;
1152c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1153c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1154d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11552bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11565ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11575ac36cfcSBarry Smith     PetscBLASInt i;
11585ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
11595ac36cfcSBarry Smith   } else {
11608b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
11615ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
11625ac36cfcSBarry Smith   }
1163d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11642bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11653a40ed3dSBarry Smith   PetscFunctionReturn(0);
1166289bc588SBarry Smith }
1167800995b7SMatthew Knepley 
1168ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
1169289bc588SBarry Smith {
1170c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1171d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
1172dfbe8321SBarry Smith   PetscErrorCode    ierr;
11730805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
1174d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
11753a40ed3dSBarry Smith 
11763a40ed3dSBarry Smith   PetscFunctionBegin;
1177c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1178c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1179d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11802bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11815ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11825ac36cfcSBarry Smith     PetscBLASInt i;
11835ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
11845ac36cfcSBarry Smith   } else {
11858b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
11865ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
11875ac36cfcSBarry Smith   }
1188d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11892bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11903a40ed3dSBarry Smith   PetscFunctionReturn(0);
1191289bc588SBarry Smith }
11926ee01492SSatish Balay 
1193ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1194289bc588SBarry Smith {
1195c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1196d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1197d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
1198dfbe8321SBarry Smith   PetscErrorCode    ierr;
11990805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
12003a40ed3dSBarry Smith 
12013a40ed3dSBarry Smith   PetscFunctionBegin;
1202c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1203c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
120417b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1205d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1206d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12071ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12088b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1209d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12101ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1211dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12123a40ed3dSBarry Smith   PetscFunctionReturn(0);
1213289bc588SBarry Smith }
12146ee01492SSatish Balay 
1215ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1216289bc588SBarry Smith {
1217c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1218d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1219d9ca1df4SBarry Smith   PetscScalar       *y;
1220dfbe8321SBarry Smith   PetscErrorCode    ierr;
12210805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
122287828ca2SBarry Smith   PetscScalar       _DOne=1.0;
12233a40ed3dSBarry Smith 
12243a40ed3dSBarry Smith   PetscFunctionBegin;
1225c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1226c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
122717b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1228d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1229d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12301ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12318b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1232d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12331ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1234dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1236289bc588SBarry Smith }
1237289bc588SBarry Smith 
1238289bc588SBarry Smith /* -----------------------------------------------------------------*/
1239e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1240289bc588SBarry Smith {
1241c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
12426849ba73SBarry Smith   PetscErrorCode ierr;
124313f74950SBarry Smith   PetscInt       i;
124467e560aaSBarry Smith 
12453a40ed3dSBarry Smith   PetscFunctionBegin;
1246d0f46423SBarry Smith   *ncols = A->cmap->n;
1247289bc588SBarry Smith   if (cols) {
1248854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr);
1249d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
1250289bc588SBarry Smith   }
1251289bc588SBarry Smith   if (vals) {
1252ca15aa20SStefano Zampini     const PetscScalar *v;
1253ca15aa20SStefano Zampini 
1254ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1255854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr);
1256ca15aa20SStefano Zampini     v   += row;
1257d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
1258ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1259289bc588SBarry Smith   }
12603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1261289bc588SBarry Smith }
12626ee01492SSatish Balay 
1263e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1264289bc588SBarry Smith {
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
12666e111a19SKarl Rupp 
1267606d414cSSatish Balay   PetscFunctionBegin;
1268606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
1269606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
12703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1271289bc588SBarry Smith }
1272289bc588SBarry Smith /* ----------------------------------------------------------------*/
1273e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
1274289bc588SBarry Smith {
1275c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
1276ca15aa20SStefano Zampini   PetscScalar      *av;
127713f74950SBarry Smith   PetscInt         i,j,idx=0;
1278ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1279c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
1280ca15aa20SStefano Zampini #endif
1281ca15aa20SStefano Zampini   PetscErrorCode   ierr;
1282d6dfbf8fSBarry Smith 
12833a40ed3dSBarry Smith   PetscFunctionBegin;
1284ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr);
1285289bc588SBarry Smith   if (!mat->roworiented) {
1286dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1287289bc588SBarry Smith       for (j=0; j<n; j++) {
1288cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1289cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1290289bc588SBarry Smith         for (i=0; i<m; i++) {
1291cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1292cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1293ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1294289bc588SBarry Smith         }
1295289bc588SBarry Smith       }
12963a40ed3dSBarry Smith     } else {
1297289bc588SBarry Smith       for (j=0; j<n; j++) {
1298cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1299cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1300289bc588SBarry Smith         for (i=0; i<m; i++) {
1301cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1302cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1303ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1304289bc588SBarry Smith         }
1305289bc588SBarry Smith       }
1306289bc588SBarry Smith     }
13073a40ed3dSBarry Smith   } else {
1308dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1309e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
1310cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1311cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1312e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
1313cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1314cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1315ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1316e8d4e0b9SBarry Smith         }
1317e8d4e0b9SBarry Smith       }
13183a40ed3dSBarry Smith     } else {
1319289bc588SBarry Smith       for (i=0; i<m; i++) {
1320cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1321cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1322289bc588SBarry Smith         for (j=0; j<n; j++) {
1323cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1324cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1325ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1326289bc588SBarry Smith         }
1327289bc588SBarry Smith       }
1328289bc588SBarry Smith     }
1329e8d4e0b9SBarry Smith   }
1330ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
1331ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1332c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
1333c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
1334ca15aa20SStefano Zampini #endif
1335ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr);
1336ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1337c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1338ca15aa20SStefano Zampini #endif
13393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1340289bc588SBarry Smith }
1341e8d4e0b9SBarry Smith 
1342e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1343ae80bb75SLois Curfman McInnes {
1344ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1345ca15aa20SStefano Zampini   const PetscScalar *vv;
134613f74950SBarry Smith   PetscInt          i,j;
1347ca15aa20SStefano Zampini   PetscErrorCode    ierr;
1348ae80bb75SLois Curfman McInnes 
13493a40ed3dSBarry Smith   PetscFunctionBegin;
1350ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1351ae80bb75SLois Curfman McInnes   /* row-oriented output */
1352ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
135397e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1354e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1355ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
13566f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1357e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
1358ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1359ae80bb75SLois Curfman McInnes     }
1360ae80bb75SLois Curfman McInnes   }
1361ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
13623a40ed3dSBarry Smith   PetscFunctionReturn(0);
1363ae80bb75SLois Curfman McInnes }
1364ae80bb75SLois Curfman McInnes 
1365289bc588SBarry Smith /* -----------------------------------------------------------------*/
1366289bc588SBarry Smith 
13678491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1368aabbc4fbSShri Abhyankar {
1369aabbc4fbSShri Abhyankar   PetscErrorCode    ierr;
13708491ab44SLisandro Dalcin   PetscBool         skipHeader;
13718491ab44SLisandro Dalcin   PetscViewerFormat format;
13728491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
13738491ab44SLisandro Dalcin   const PetscScalar *v;
13748491ab44SLisandro Dalcin   PetscScalar       *vwork;
1375aabbc4fbSShri Abhyankar 
1376aabbc4fbSShri Abhyankar   PetscFunctionBegin;
13778491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
13788491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
13798491ab44SLisandro Dalcin   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
13808491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1381aabbc4fbSShri Abhyankar 
13828491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
13838491ab44SLisandro Dalcin 
13848491ab44SLisandro Dalcin   /* write matrix header */
13858491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
13868491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
13878491ab44SLisandro Dalcin   if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);}
13888491ab44SLisandro Dalcin 
13898491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
13908491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
13918491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
13928491ab44SLisandro Dalcin     /* store row lengths for each row */
13938491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr);
13948491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
13958491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
13968491ab44SLisandro Dalcin     /* store column indices (zero start index) */
13978491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
13988491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
13998491ab44SLisandro Dalcin         iwork[k] = j;
14008491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14018491ab44SLisandro Dalcin     ierr = PetscFree(iwork);CHKERRQ(ierr);
14028491ab44SLisandro Dalcin   }
14038491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
14048491ab44SLisandro Dalcin   ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr);
14058491ab44SLisandro Dalcin   ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr);
14068491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14078491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
14088491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
14098491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
14108491ab44SLisandro Dalcin   ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr);
14118491ab44SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14128491ab44SLisandro Dalcin   ierr = PetscFree(vwork);CHKERRQ(ierr);
14138491ab44SLisandro Dalcin   PetscFunctionReturn(0);
14148491ab44SLisandro Dalcin }
14158491ab44SLisandro Dalcin 
14168491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
14178491ab44SLisandro Dalcin {
14188491ab44SLisandro Dalcin   PetscErrorCode ierr;
14198491ab44SLisandro Dalcin   PetscBool      skipHeader;
14208491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
14218491ab44SLisandro Dalcin   PetscInt       rows,cols;
14228491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
14238491ab44SLisandro Dalcin 
14248491ab44SLisandro Dalcin   PetscFunctionBegin;
14258491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
14268491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
14278491ab44SLisandro Dalcin 
14288491ab44SLisandro Dalcin   if (!skipHeader) {
14298491ab44SLisandro Dalcin     ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
14308491ab44SLisandro Dalcin     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
14318491ab44SLisandro Dalcin     M = header[1]; N = header[2];
14328491ab44SLisandro Dalcin     if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
14338491ab44SLisandro Dalcin     if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
14348491ab44SLisandro Dalcin     nz = header[3];
14358491ab44SLisandro Dalcin     if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz);
1436aabbc4fbSShri Abhyankar   } else {
14378491ab44SLisandro Dalcin     ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
14388491ab44SLisandro Dalcin     if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
14398491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1440e6324fbbSBarry Smith   }
1441aabbc4fbSShri Abhyankar 
14428491ab44SLisandro Dalcin   /* setup global sizes if not set */
14438491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
14448491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
14458491ab44SLisandro Dalcin   ierr = MatSetUp(mat);CHKERRQ(ierr);
14468491ab44SLisandro Dalcin   /* check if global sizes are correct */
14478491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
14488491ab44SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
1449aabbc4fbSShri Abhyankar 
14508491ab44SLisandro Dalcin   ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr);
14518491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
14528491ab44SLisandro Dalcin   ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr);
14538491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14548491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
14558491ab44SLisandro Dalcin     PetscInt nnz = m*N;
14568491ab44SLisandro Dalcin     /* read in matrix values */
14578491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr);
14588491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14598491ab44SLisandro Dalcin     /* store values in column major order */
14608491ab44SLisandro Dalcin     for (j=0; j<N; j++)
14618491ab44SLisandro Dalcin       for (i=0; i<m; i++)
14628491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
14638491ab44SLisandro Dalcin     ierr = PetscFree(vwork);CHKERRQ(ierr);
14648491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
14658491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
14668491ab44SLisandro Dalcin     /* read in row lengths */
14678491ab44SLisandro Dalcin     ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr);
14688491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14698491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
14708491ab44SLisandro Dalcin     /* read in column indices and values */
14718491ab44SLisandro Dalcin     ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr);
14728491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14738491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14748491ab44SLisandro Dalcin     /* store values in column major order */
14758491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
14768491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
14778491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
14788491ab44SLisandro Dalcin     ierr = PetscFree(rlens);CHKERRQ(ierr);
14798491ab44SLisandro Dalcin     ierr = PetscFree2(icols,vwork);CHKERRQ(ierr);
1480aabbc4fbSShri Abhyankar   }
14818491ab44SLisandro Dalcin   ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr);
14828491ab44SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14838491ab44SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1484aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1485aabbc4fbSShri Abhyankar }
1486aabbc4fbSShri Abhyankar 
1487eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1488eb91f321SVaclav Hapla {
1489eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1490eb91f321SVaclav Hapla   PetscErrorCode ierr;
1491eb91f321SVaclav Hapla 
1492eb91f321SVaclav Hapla   PetscFunctionBegin;
1493eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1494eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1495eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1496eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1497eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1498eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
1499eb91f321SVaclav Hapla   if (isbinary) {
15008491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1501eb91f321SVaclav Hapla   } else if (ishdf5) {
1502eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
1503eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1504eb91f321SVaclav Hapla #else
1505eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1506eb91f321SVaclav Hapla #endif
1507eb91f321SVaclav Hapla   } else {
1508eb91f321SVaclav Hapla     SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1509eb91f321SVaclav Hapla   }
1510eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1511eb91f321SVaclav Hapla }
1512eb91f321SVaclav Hapla 
15136849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1514289bc588SBarry Smith {
1515932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1516dfbe8321SBarry Smith   PetscErrorCode    ierr;
151713f74950SBarry Smith   PetscInt          i,j;
15182dcb1b2aSMatthew Knepley   const char        *name;
1519ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1520f3ef73ceSBarry Smith   PetscViewerFormat format;
15215f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1522ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
15235f481a85SSatish Balay #endif
1524932b0c3eSLois Curfman McInnes 
15253a40ed3dSBarry Smith   PetscFunctionBegin;
1526ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1527b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1528456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
15293a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1530fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1531d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1532d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1533ca15aa20SStefano Zampini       v    = av + i;
153477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1535d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1536aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1537329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
153857622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1539329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
154057622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
15416831982aSBarry Smith         }
154280cd9d93SLois Curfman McInnes #else
15436831982aSBarry Smith         if (*v) {
154457622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
15456831982aSBarry Smith         }
154680cd9d93SLois Curfman McInnes #endif
15471b807ce4Svictorle         v += a->lda;
154880cd9d93SLois Curfman McInnes       }
1549b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
155080cd9d93SLois Curfman McInnes     }
1551d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
15523a40ed3dSBarry Smith   } else {
1553d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1554aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
155547989497SBarry Smith     /* determine if matrix has all real values */
1556ca15aa20SStefano Zampini     v = av;
1557d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1558ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
155947989497SBarry Smith     }
156047989497SBarry Smith #endif
1561fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
15623a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1563d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1564d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1565fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1566ffac6cdbSBarry Smith     }
1567ffac6cdbSBarry Smith 
1568d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1569ca15aa20SStefano Zampini       v = av + i;
1570d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1571aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
157247989497SBarry Smith         if (allreal) {
1573c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
157447989497SBarry Smith         } else {
1575c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
157647989497SBarry Smith         }
1577289bc588SBarry Smith #else
1578c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1579289bc588SBarry Smith #endif
15801b807ce4Svictorle         v += a->lda;
1581289bc588SBarry Smith       }
1582b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1583289bc588SBarry Smith     }
1584fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1585b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1586ffac6cdbSBarry Smith     }
1587d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1588da3a660dSBarry Smith   }
1589ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1590b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1592289bc588SBarry Smith }
1593289bc588SBarry Smith 
15949804daf3SBarry Smith #include <petscdraw.h>
1595e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1596f1af5d2fSBarry Smith {
1597f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
15986849ba73SBarry Smith   PetscErrorCode    ierr;
1599383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1600383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1601ca15aa20SStefano Zampini   const PetscScalar *v;
1602b0a32e0cSBarry Smith   PetscViewer       viewer;
1603b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1604f3ef73ceSBarry Smith   PetscViewerFormat format;
1605f1af5d2fSBarry Smith 
1606f1af5d2fSBarry Smith   PetscFunctionBegin;
1607f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1608b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1609b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1610f1af5d2fSBarry Smith 
1611f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1612ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1613fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1614383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1615f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1616f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1617383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1618f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1619f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1620f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1621ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1622ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1623ca15aa20SStefano Zampini         else continue;
1624b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1625f1af5d2fSBarry Smith       }
1626f1af5d2fSBarry Smith     }
1627383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1628f1af5d2fSBarry Smith   } else {
1629f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1630f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1631b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1632b05fc000SLisandro Dalcin     PetscDraw popup;
1633b05fc000SLisandro Dalcin 
1634f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1635f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1636f1af5d2fSBarry Smith     }
1637383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1638b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
163945f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1640383922c3SLisandro Dalcin 
1641383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1642f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1643f1af5d2fSBarry Smith       x_l = j;
1644f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1645f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1646f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1647f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1648b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1649b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1650f1af5d2fSBarry Smith       }
1651f1af5d2fSBarry Smith     }
1652383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1653f1af5d2fSBarry Smith   }
1654ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1655f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1656f1af5d2fSBarry Smith }
1657f1af5d2fSBarry Smith 
1658e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1659f1af5d2fSBarry Smith {
1660b0a32e0cSBarry Smith   PetscDraw      draw;
1661ace3abfcSBarry Smith   PetscBool      isnull;
1662329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1663dfbe8321SBarry Smith   PetscErrorCode ierr;
1664f1af5d2fSBarry Smith 
1665f1af5d2fSBarry Smith   PetscFunctionBegin;
1666b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1667b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1668abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1669f1af5d2fSBarry Smith 
1670d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1671f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1672b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1673832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1674b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
16750298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1676832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1677f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1678f1af5d2fSBarry Smith }
1679f1af5d2fSBarry Smith 
1680dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1681932b0c3eSLois Curfman McInnes {
1682dfbe8321SBarry Smith   PetscErrorCode ierr;
1683ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1684932b0c3eSLois Curfman McInnes 
16853a40ed3dSBarry Smith   PetscFunctionBegin;
1686251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1687251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1688251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
16890f5bd95cSBarry Smith 
1690c45a1595SBarry Smith   if (iascii) {
1691c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
16920f5bd95cSBarry Smith   } else if (isbinary) {
1693637a0070SStefano Zampini     ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr);
1694f1af5d2fSBarry Smith   } else if (isdraw) {
1695f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1696932b0c3eSLois Curfman McInnes   }
16973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1698932b0c3eSLois Curfman McInnes }
1699289bc588SBarry Smith 
1700637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1701d3042a70SBarry Smith {
1702d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1703d3042a70SBarry Smith 
1704d3042a70SBarry Smith   PetscFunctionBegin;
17055ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17065ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17075ea7661aSPierre Jolivet   if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first");
1708d3042a70SBarry Smith   a->unplacedarray       = a->v;
1709d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1710d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1711637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1712ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1713c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1714ca15aa20SStefano Zampini #endif
1715d3042a70SBarry Smith   PetscFunctionReturn(0);
1716d3042a70SBarry Smith }
1717d3042a70SBarry Smith 
1718d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1719d3042a70SBarry Smith {
1720d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1721d3042a70SBarry Smith 
1722d3042a70SBarry Smith   PetscFunctionBegin;
17235ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17245ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1725d3042a70SBarry Smith   a->v             = a->unplacedarray;
1726d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1727d3042a70SBarry Smith   a->unplacedarray = NULL;
1728ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1729c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1730ca15aa20SStefano Zampini #endif
1731d3042a70SBarry Smith   PetscFunctionReturn(0);
1732d3042a70SBarry Smith }
1733d3042a70SBarry Smith 
1734d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1735d5ea218eSStefano Zampini {
1736d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1737d5ea218eSStefano Zampini   PetscErrorCode ierr;
1738d5ea218eSStefano Zampini 
1739d5ea218eSStefano Zampini   PetscFunctionBegin;
17405ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17415ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1742d5ea218eSStefano Zampini   if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); }
1743d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1744d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1745d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1746d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1747d5ea218eSStefano Zampini #endif
1748d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1749d5ea218eSStefano Zampini }
1750d5ea218eSStefano Zampini 
1751ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1752289bc588SBarry Smith {
1753ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1754dfbe8321SBarry Smith   PetscErrorCode ierr;
175590f02eecSBarry Smith 
17563a40ed3dSBarry Smith   PetscFunctionBegin;
1757aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1758d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1759a5a9c739SBarry Smith #endif
17604396437dSToby Isaac   ierr = VecDestroy(&(l->qrrhs));CHKERRQ(ierr);
17614905a7bcSToby Isaac   ierr = PetscFree(l->tau);CHKERRQ(ierr);
176205b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1763a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1764abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
17656857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1766637a0070SStefano Zampini   if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);}
17675ea7661aSPierre Jolivet   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17685ea7661aSPierre Jolivet   if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17696947451fSStefano Zampini   ierr = VecDestroy(&l->cvec);CHKERRQ(ierr);
17705ea7661aSPierre Jolivet   ierr = MatDestroy(&l->cmat);CHKERRQ(ierr);
1771bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1772dbd8c25aSHong Zhang 
1773f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
17744905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL);CHKERRQ(ierr);
17754905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorNumeric_C",NULL);CHKERRQ(ierr);
17764905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorSymbolic_C",NULL);CHKERRQ(ierr);
177749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
1778ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
1779bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
178052c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
1781d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1782d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1783d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
178452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
178552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
17866947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
17876947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
17888baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
17898baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17908baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
17918baccfbdSHong Zhang #endif
1792d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1793d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL);CHKERRQ(ierr);
1794d24d4204SJose E. Roman #endif
17952bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
17962bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr);
17974222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr);
17984222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr);
17992bf066beSStefano Zampini #endif
1800bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
18014222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
18024222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr);
18034222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
18044222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
180552c5f739Sprj- 
180686aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
180786aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
18086947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
18096947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
18106947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
18116947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
18126947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
18136947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
18145ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr);
18155ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr);
18163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1817289bc588SBarry Smith }
1818289bc588SBarry Smith 
1819e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1820289bc588SBarry Smith {
1821c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
18226849ba73SBarry Smith   PetscErrorCode ierr;
18236536e3caSStefano Zampini   PetscInt       k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n;
182487828ca2SBarry Smith   PetscScalar    *v,tmp;
182548b35521SBarry Smith 
18263a40ed3dSBarry Smith   PetscFunctionBegin;
18276536e3caSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
18286536e3caSStefano Zampini     if (m == n) { /* in place transpose */
1829ca15aa20SStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1830d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1831289bc588SBarry Smith         for (k=0; k<j; k++) {
18321b807ce4Svictorle           tmp        = v[j + k*M];
18331b807ce4Svictorle           v[j + k*M] = v[k + j*M];
18341b807ce4Svictorle           v[k + j*M] = tmp;
1835289bc588SBarry Smith         }
1836289bc588SBarry Smith       }
1837ca15aa20SStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18386536e3caSStefano Zampini     } else { /* reuse memory, temporary allocates new memory */
18396536e3caSStefano Zampini       PetscScalar *v2;
18406536e3caSStefano Zampini       PetscLayout tmplayout;
18416536e3caSStefano Zampini 
18426536e3caSStefano Zampini       ierr = PetscMalloc1((size_t)m*n,&v2);CHKERRQ(ierr);
18436536e3caSStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
18446536e3caSStefano Zampini       for (j=0; j<n; j++) {
18456536e3caSStefano Zampini         for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M];
18466536e3caSStefano Zampini       }
18476536e3caSStefano Zampini       ierr = PetscArraycpy(v,v2,(size_t)m*n);CHKERRQ(ierr);
18486536e3caSStefano Zampini       ierr = PetscFree(v2);CHKERRQ(ierr);
18496536e3caSStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18506536e3caSStefano Zampini       /* cleanup size dependent quantities */
18516536e3caSStefano Zampini       ierr = VecDestroy(&mat->cvec);CHKERRQ(ierr);
18526536e3caSStefano Zampini       ierr = MatDestroy(&mat->cmat);CHKERRQ(ierr);
18536536e3caSStefano Zampini       ierr = PetscFree(mat->pivots);CHKERRQ(ierr);
18546536e3caSStefano Zampini       ierr = PetscFree(mat->fwork);CHKERRQ(ierr);
18556536e3caSStefano Zampini       ierr = MatDestroy(&mat->ptapwork);CHKERRQ(ierr);
18566536e3caSStefano Zampini       /* swap row/col layouts */
18576536e3caSStefano Zampini       mat->lda  = n;
18586536e3caSStefano Zampini       tmplayout = A->rmap;
18596536e3caSStefano Zampini       A->rmap   = A->cmap;
18606536e3caSStefano Zampini       A->cmap   = tmplayout;
18616536e3caSStefano Zampini     }
18623a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1863d3e5ee88SLois Curfman McInnes     Mat          tmat;
1864ec8511deSBarry Smith     Mat_SeqDense *tmatd;
186587828ca2SBarry Smith     PetscScalar  *v2;
1866af36a384SStefano Zampini     PetscInt     M2;
1867ea709b57SSatish Balay 
18686536e3caSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX) {
1869ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1870d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
18717adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
18720298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1873ca15aa20SStefano Zampini     } else tmat = *matout;
1874ca15aa20SStefano Zampini 
1875ca15aa20SStefano Zampini     ierr  = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
1876ca15aa20SStefano Zampini     ierr  = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr);
1877ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1878ca15aa20SStefano Zampini     M2    = tmatd->lda;
1879d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1880af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1881d3e5ee88SLois Curfman McInnes     }
1882ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr);
1883ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
18846d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18856d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18866536e3caSStefano Zampini     *matout = tmat;
188748b35521SBarry Smith   }
18883a40ed3dSBarry Smith   PetscFunctionReturn(0);
1889289bc588SBarry Smith }
1890289bc588SBarry Smith 
1891e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1892289bc588SBarry Smith {
1893c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1894c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1895ca15aa20SStefano Zampini   PetscInt          i;
1896ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
1897ca15aa20SStefano Zampini   PetscErrorCode    ierr;
18989ea5d5aeSSatish Balay 
18993a40ed3dSBarry Smith   PetscFunctionBegin;
1900d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1901d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1902ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr);
1903ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr);
1904ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
1905ca15aa20SStefano Zampini     ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr);
1906ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1907ca15aa20SStefano Zampini     v1 += mat1->lda;
1908ca15aa20SStefano Zampini     v2 += mat2->lda;
19091b807ce4Svictorle   }
1910ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr);
1911ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr);
191277c4ece6SBarry Smith   *flg = PETSC_TRUE;
19133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1914289bc588SBarry Smith }
1915289bc588SBarry Smith 
1916e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1917289bc588SBarry Smith {
1918c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
191913f74950SBarry Smith   PetscInt          i,n,len;
1920ca15aa20SStefano Zampini   PetscScalar       *x;
1921ca15aa20SStefano Zampini   const PetscScalar *vv;
1922ca15aa20SStefano Zampini   PetscErrorCode    ierr;
192344cd7ae7SLois Curfman McInnes 
19243a40ed3dSBarry Smith   PetscFunctionBegin;
19257a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
19261ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1927d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1928ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1929e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
193044cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1931ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1932289bc588SBarry Smith   }
1933ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
19341ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
19353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1936289bc588SBarry Smith }
1937289bc588SBarry Smith 
1938e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1939289bc588SBarry Smith {
1940c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1941f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1942ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1943dfbe8321SBarry Smith   PetscErrorCode    ierr;
1944d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
194555659b69SBarry Smith 
19463a40ed3dSBarry Smith   PetscFunctionBegin;
1947ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr);
194828988994SBarry Smith   if (ll) {
19497a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1950f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1951e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1952da3a660dSBarry Smith     for (i=0; i<m; i++) {
1953da3a660dSBarry Smith       x = l[i];
1954ca15aa20SStefano Zampini       v = vv + i;
1955b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1956da3a660dSBarry Smith     }
1957f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1958eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1959da3a660dSBarry Smith   }
196028988994SBarry Smith   if (rr) {
19617a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1962f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1963e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1964da3a660dSBarry Smith     for (i=0; i<n; i++) {
1965da3a660dSBarry Smith       x = r[i];
1966ca15aa20SStefano Zampini       v = vv + i*mat->lda;
19672205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1968da3a660dSBarry Smith     }
1969f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1970eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1971da3a660dSBarry Smith   }
1972ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr);
19733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1974289bc588SBarry Smith }
1975289bc588SBarry Smith 
1976ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1977289bc588SBarry Smith {
1978c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1979ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1980329f5518SBarry Smith   PetscReal         sum  = 0.0;
1981d0f46423SBarry Smith   PetscInt          lda  =mat->lda,m=A->rmap->n,i,j;
1982efee365bSSatish Balay   PetscErrorCode    ierr;
198355659b69SBarry Smith 
19843a40ed3dSBarry Smith   PetscFunctionBegin;
1985ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
1986ca15aa20SStefano Zampini   v    = vv;
1987289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1988a5ce6ee0Svictorle     if (lda>m) {
1989d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1990ca15aa20SStefano Zampini         v = vv+j*lda;
1991a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1992a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1993a5ce6ee0Svictorle         }
1994a5ce6ee0Svictorle       }
1995a5ce6ee0Svictorle     } else {
1996570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1997570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
199873cf7048SBarry Smith       PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one));
1999570b7f6dSBarry Smith     }
2000570b7f6dSBarry Smith #else
2001d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
2002329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
2003289bc588SBarry Smith       }
2004a5ce6ee0Svictorle     }
20058f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
2006570b7f6dSBarry Smith #endif
2007dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20083a40ed3dSBarry Smith   } else if (type == NORM_1) {
2009064f8208SBarry Smith     *nrm = 0.0;
2010d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2011ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
2012289bc588SBarry Smith       sum = 0.0;
2013d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
201433a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
2015289bc588SBarry Smith       }
2016064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2017289bc588SBarry Smith     }
2018eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20193a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
2020064f8208SBarry Smith     *nrm = 0.0;
2021d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
2022ca15aa20SStefano Zampini       v   = vv + j;
2023289bc588SBarry Smith       sum = 0.0;
2024d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
20251b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
2026289bc588SBarry Smith       }
2027064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2028289bc588SBarry Smith     }
2029eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
2030e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
2031ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
20323a40ed3dSBarry Smith   PetscFunctionReturn(0);
2033289bc588SBarry Smith }
2034289bc588SBarry Smith 
2035e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
2036289bc588SBarry Smith {
2037c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
203863ba0a88SBarry Smith   PetscErrorCode ierr;
203967e560aaSBarry Smith 
20403a40ed3dSBarry Smith   PetscFunctionBegin;
2041b5a2b587SKris Buschelman   switch (op) {
2042b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
20434e0d8c25SBarry Smith     aij->roworiented = flg;
2044b5a2b587SKris Buschelman     break;
2045512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
2046b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
20473971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
20488c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
204913fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
2050b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
2051b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
20520f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
20535021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
2054071fcb05SBarry Smith   case MAT_SORTED_FULL:
20555021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
20565021d80fSJed Brown     break;
20575021d80fSJed Brown   case MAT_SPD:
205877e54ba9SKris Buschelman   case MAT_SYMMETRIC:
205977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
20609a4540c5SBarry Smith   case MAT_HERMITIAN:
20619a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
20625021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
206377e54ba9SKris Buschelman     break;
2064b5a2b587SKris Buschelman   default:
2065e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
20663a40ed3dSBarry Smith   }
20673a40ed3dSBarry Smith   PetscFunctionReturn(0);
2068289bc588SBarry Smith }
2069289bc588SBarry Smith 
2070e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
20716f0a148fSBarry Smith {
2072ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
20736849ba73SBarry Smith   PetscErrorCode ierr;
2074d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
2075ca15aa20SStefano Zampini   PetscScalar    *v;
20763a40ed3dSBarry Smith 
20773a40ed3dSBarry Smith   PetscFunctionBegin;
2078ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2079a5ce6ee0Svictorle   if (lda>m) {
2080d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2081ca15aa20SStefano Zampini       ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr);
2082a5ce6ee0Svictorle     }
2083a5ce6ee0Svictorle   } else {
2084ca15aa20SStefano Zampini     ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2085a5ce6ee0Svictorle   }
2086ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
20873a40ed3dSBarry Smith   PetscFunctionReturn(0);
20886f0a148fSBarry Smith }
20896f0a148fSBarry Smith 
2090e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
20916f0a148fSBarry Smith {
209297b48c8fSBarry Smith   PetscErrorCode    ierr;
2093ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
2094b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
2095ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
209697b48c8fSBarry Smith   const PetscScalar *xx;
209755659b69SBarry Smith 
20983a40ed3dSBarry Smith   PetscFunctionBegin;
209976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
2100b9679d65SBarry Smith     for (i=0; i<N; i++) {
2101b9679d65SBarry Smith       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
2102b9679d65SBarry Smith       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
2103b9679d65SBarry Smith     }
210476bd3646SJed Brown   }
2105ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
2106b9679d65SBarry Smith 
210797b48c8fSBarry Smith   /* fix right hand side if needed */
210897b48c8fSBarry Smith   if (x && b) {
210997b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
211097b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
21112205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
211297b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
211397b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
211497b48c8fSBarry Smith   }
211597b48c8fSBarry Smith 
2116ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
21176f0a148fSBarry Smith   for (i=0; i<N; i++) {
2118ca15aa20SStefano Zampini     slot = v + rows[i];
2119b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
21206f0a148fSBarry Smith   }
2121f4df32b1SMatthew Knepley   if (diag != 0.0) {
2122b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
21236f0a148fSBarry Smith     for (i=0; i<N; i++) {
2124ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
2125f4df32b1SMatthew Knepley       *slot = diag;
21266f0a148fSBarry Smith     }
21276f0a148fSBarry Smith   }
2128ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
21293a40ed3dSBarry Smith   PetscFunctionReturn(0);
21306f0a148fSBarry Smith }
2131557bce09SLois Curfman McInnes 
213249a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
213349a6ff4bSBarry Smith {
213449a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
213549a6ff4bSBarry Smith 
213649a6ff4bSBarry Smith   PetscFunctionBegin;
213749a6ff4bSBarry Smith   *lda = mat->lda;
213849a6ff4bSBarry Smith   PetscFunctionReturn(0);
213949a6ff4bSBarry Smith }
214049a6ff4bSBarry Smith 
2141637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
214264e87e97SBarry Smith {
2143c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
21443a40ed3dSBarry Smith 
21453a40ed3dSBarry Smith   PetscFunctionBegin;
2146616b8fbbSStefano Zampini   if (mat->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
214764e87e97SBarry Smith   *array = mat->v;
21483a40ed3dSBarry Smith   PetscFunctionReturn(0);
214964e87e97SBarry Smith }
21500754003eSLois Curfman McInnes 
2151637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
2152ff14e315SSatish Balay {
21533a40ed3dSBarry Smith   PetscFunctionBegin;
2154637a0070SStefano Zampini   *array = NULL;
21553a40ed3dSBarry Smith   PetscFunctionReturn(0);
2156ff14e315SSatish Balay }
21570754003eSLois Curfman McInnes 
2158dec5eb66SMatthew G Knepley /*@C
215949a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
216049a6ff4bSBarry Smith 
2161ad16ce7aSStefano Zampini    Not collective
216249a6ff4bSBarry Smith 
216349a6ff4bSBarry Smith    Input Parameter:
216449a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
216549a6ff4bSBarry Smith 
216649a6ff4bSBarry Smith    Output Parameter:
216749a6ff4bSBarry Smith .   lda - the leading dimension
216849a6ff4bSBarry Smith 
216949a6ff4bSBarry Smith    Level: intermediate
217049a6ff4bSBarry Smith 
2171ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
217249a6ff4bSBarry Smith @*/
217349a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
217449a6ff4bSBarry Smith {
217549a6ff4bSBarry Smith   PetscErrorCode ierr;
217649a6ff4bSBarry Smith 
217749a6ff4bSBarry Smith   PetscFunctionBegin;
2178d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2179d5ea218eSStefano Zampini   PetscValidPointer(lda,2);
218049a6ff4bSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr);
218149a6ff4bSBarry Smith   PetscFunctionReturn(0);
218249a6ff4bSBarry Smith }
218349a6ff4bSBarry Smith 
218449a6ff4bSBarry Smith /*@C
2185ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
2186ad16ce7aSStefano Zampini 
2187ad16ce7aSStefano Zampini    Not collective
2188ad16ce7aSStefano Zampini 
2189ad16ce7aSStefano Zampini    Input Parameter:
2190ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
2191ad16ce7aSStefano Zampini -  lda - the leading dimension
2192ad16ce7aSStefano Zampini 
2193ad16ce7aSStefano Zampini    Level: intermediate
2194ad16ce7aSStefano Zampini 
2195ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
2196ad16ce7aSStefano Zampini @*/
2197ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
2198ad16ce7aSStefano Zampini {
2199ad16ce7aSStefano Zampini   PetscErrorCode ierr;
2200ad16ce7aSStefano Zampini 
2201ad16ce7aSStefano Zampini   PetscFunctionBegin;
2202ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2203ad16ce7aSStefano Zampini   ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr);
2204ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
2205ad16ce7aSStefano Zampini }
2206ad16ce7aSStefano Zampini 
2207ad16ce7aSStefano Zampini /*@C
22086947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
220973a71a0fSBarry Smith 
22108572280aSBarry Smith    Logically Collective on Mat
221173a71a0fSBarry Smith 
221273a71a0fSBarry Smith    Input Parameter:
22136947451fSStefano Zampini .  mat - a dense matrix
221473a71a0fSBarry Smith 
221573a71a0fSBarry Smith    Output Parameter:
221673a71a0fSBarry Smith .   array - pointer to the data
221773a71a0fSBarry Smith 
221873a71a0fSBarry Smith    Level: intermediate
221973a71a0fSBarry Smith 
22206947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
222173a71a0fSBarry Smith @*/
22228c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
222373a71a0fSBarry Smith {
222473a71a0fSBarry Smith   PetscErrorCode ierr;
222573a71a0fSBarry Smith 
222673a71a0fSBarry Smith   PetscFunctionBegin;
2227d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2228d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22298c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
223073a71a0fSBarry Smith   PetscFunctionReturn(0);
223173a71a0fSBarry Smith }
223273a71a0fSBarry Smith 
2233dec5eb66SMatthew G Knepley /*@C
2234579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
223573a71a0fSBarry Smith 
22368572280aSBarry Smith    Logically Collective on Mat
22378572280aSBarry Smith 
22388572280aSBarry Smith    Input Parameters:
22396947451fSStefano Zampini +  mat - a dense matrix
2240a2b725a8SWilliam Gropp -  array - pointer to the data
22418572280aSBarry Smith 
22428572280aSBarry Smith    Level: intermediate
22438572280aSBarry Smith 
22446947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22458572280aSBarry Smith @*/
22468572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
22478572280aSBarry Smith {
22488572280aSBarry Smith   PetscErrorCode ierr;
22498572280aSBarry Smith 
22508572280aSBarry Smith   PetscFunctionBegin;
2251d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2252d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22538572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
22548572280aSBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2255637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2256637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
2257637a0070SStefano Zampini #endif
22588572280aSBarry Smith   PetscFunctionReturn(0);
22598572280aSBarry Smith }
22608572280aSBarry Smith 
22618572280aSBarry Smith /*@C
22626947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
22638572280aSBarry Smith 
22648572280aSBarry Smith    Not Collective
22658572280aSBarry Smith 
22668572280aSBarry Smith    Input Parameter:
22676947451fSStefano Zampini .  mat - a dense matrix
22688572280aSBarry Smith 
22698572280aSBarry Smith    Output Parameter:
22708572280aSBarry Smith .   array - pointer to the data
22718572280aSBarry Smith 
22728572280aSBarry Smith    Level: intermediate
22738572280aSBarry Smith 
22746947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22758572280aSBarry Smith @*/
22768572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
22778572280aSBarry Smith {
22788572280aSBarry Smith   PetscErrorCode ierr;
22798572280aSBarry Smith 
22808572280aSBarry Smith   PetscFunctionBegin;
2281d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2282d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22838572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
22848572280aSBarry Smith   PetscFunctionReturn(0);
22858572280aSBarry Smith }
22868572280aSBarry Smith 
22878572280aSBarry Smith /*@C
22886947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
22898572280aSBarry Smith 
229073a71a0fSBarry Smith    Not Collective
229173a71a0fSBarry Smith 
229273a71a0fSBarry Smith    Input Parameters:
22936947451fSStefano Zampini +  mat - a dense matrix
2294a2b725a8SWilliam Gropp -  array - pointer to the data
229573a71a0fSBarry Smith 
229673a71a0fSBarry Smith    Level: intermediate
229773a71a0fSBarry Smith 
22986947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
229973a71a0fSBarry Smith @*/
23008572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
230173a71a0fSBarry Smith {
230273a71a0fSBarry Smith   PetscErrorCode ierr;
230373a71a0fSBarry Smith 
230473a71a0fSBarry Smith   PetscFunctionBegin;
2305d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2306d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23078572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
230873a71a0fSBarry Smith   PetscFunctionReturn(0);
230973a71a0fSBarry Smith }
231073a71a0fSBarry Smith 
23116947451fSStefano Zampini /*@C
23126947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
23136947451fSStefano Zampini 
23146947451fSStefano Zampini    Not Collective
23156947451fSStefano Zampini 
23166947451fSStefano Zampini    Input Parameter:
23176947451fSStefano Zampini .  mat - a dense matrix
23186947451fSStefano Zampini 
23196947451fSStefano Zampini    Output Parameter:
23206947451fSStefano Zampini .   array - pointer to the data
23216947451fSStefano Zampini 
23226947451fSStefano Zampini    Level: intermediate
23236947451fSStefano Zampini 
23246947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23256947451fSStefano Zampini @*/
23266947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
23276947451fSStefano Zampini {
23286947451fSStefano Zampini   PetscErrorCode ierr;
23296947451fSStefano Zampini 
23306947451fSStefano Zampini   PetscFunctionBegin;
2331d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2332d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23336947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23346947451fSStefano Zampini   PetscFunctionReturn(0);
23356947451fSStefano Zampini }
23366947451fSStefano Zampini 
23376947451fSStefano Zampini /*@C
23386947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
23396947451fSStefano Zampini 
23406947451fSStefano Zampini    Not Collective
23416947451fSStefano Zampini 
23426947451fSStefano Zampini    Input Parameters:
23436947451fSStefano Zampini +  mat - a dense matrix
23446947451fSStefano Zampini -  array - pointer to the data
23456947451fSStefano Zampini 
23466947451fSStefano Zampini    Level: intermediate
23476947451fSStefano Zampini 
23486947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23496947451fSStefano Zampini @*/
23506947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
23516947451fSStefano Zampini {
23526947451fSStefano Zampini   PetscErrorCode ierr;
23536947451fSStefano Zampini 
23546947451fSStefano Zampini   PetscFunctionBegin;
2355d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2356d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23576947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23586947451fSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
23596947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
23606947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
23616947451fSStefano Zampini #endif
23626947451fSStefano Zampini   PetscFunctionReturn(0);
23636947451fSStefano Zampini }
23646947451fSStefano Zampini 
2365023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
23660754003eSLois Curfman McInnes {
2367c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
23686849ba73SBarry Smith   PetscErrorCode ierr;
2369ca15aa20SStefano Zampini   PetscInt       i,j,nrows,ncols,blda;
23705d0c19d7SBarry Smith   const PetscInt *irow,*icol;
237187828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
23720754003eSLois Curfman McInnes   Mat            newmat;
23730754003eSLois Curfman McInnes 
23743a40ed3dSBarry Smith   PetscFunctionBegin;
237578b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
237678b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
2377e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
2378e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
23790754003eSLois Curfman McInnes 
2380182d2002SSatish Balay   /* Check submatrixcall */
2381182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
238213f74950SBarry Smith     PetscInt n_cols,n_rows;
2383182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
238421a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2385f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
2386c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
238721a2c019SBarry Smith     }
2388182d2002SSatish Balay     newmat = *B;
2389182d2002SSatish Balay   } else {
23900754003eSLois Curfman McInnes     /* Create and fill new matrix */
2391ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2392f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
23937adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
23940298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
2395182d2002SSatish Balay   }
2396182d2002SSatish Balay 
2397182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
2398ca15aa20SStefano Zampini   ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr);
2399ca15aa20SStefano Zampini   ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr);
2400182d2002SSatish Balay   for (i=0; i<ncols; i++) {
24016de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2402ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2403ca15aa20SStefano Zampini     bv += blda;
24040754003eSLois Curfman McInnes   }
2405ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr);
2406182d2002SSatish Balay 
2407182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
24086d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24096d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24100754003eSLois Curfman McInnes 
24110754003eSLois Curfman McInnes   /* Free work space */
241278b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
241378b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
2414182d2002SSatish Balay   *B   = newmat;
24153a40ed3dSBarry Smith   PetscFunctionReturn(0);
24160754003eSLois Curfman McInnes }
24170754003eSLois Curfman McInnes 
24187dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2419905e6a2fSBarry Smith {
24206849ba73SBarry Smith   PetscErrorCode ierr;
242113f74950SBarry Smith   PetscInt       i;
2422905e6a2fSBarry Smith 
24233a40ed3dSBarry Smith   PetscFunctionBegin;
2424905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
2425df750dc8SHong Zhang     ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr);
2426905e6a2fSBarry Smith   }
2427905e6a2fSBarry Smith 
2428905e6a2fSBarry Smith   for (i=0; i<n; i++) {
2429023c16fcSToby Isaac     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i]);CHKERRQ(ierr);
2430905e6a2fSBarry Smith   }
24313a40ed3dSBarry Smith   PetscFunctionReturn(0);
2432905e6a2fSBarry Smith }
2433905e6a2fSBarry Smith 
2434e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2435c0aa2d19SHong Zhang {
2436c0aa2d19SHong Zhang   PetscFunctionBegin;
2437c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2438c0aa2d19SHong Zhang }
2439c0aa2d19SHong Zhang 
2440e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2441c0aa2d19SHong Zhang {
2442c0aa2d19SHong Zhang   PetscFunctionBegin;
2443c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2444c0aa2d19SHong Zhang }
2445c0aa2d19SHong Zhang 
2446a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
24474b0e389bSBarry Smith {
24484b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
24496849ba73SBarry Smith   PetscErrorCode    ierr;
2450ca15aa20SStefano Zampini   const PetscScalar *va;
2451ca15aa20SStefano Zampini   PetscScalar       *vb;
2452d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
24533a40ed3dSBarry Smith 
24543a40ed3dSBarry Smith   PetscFunctionBegin;
245533f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
245633f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
2457cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
24583a40ed3dSBarry Smith     PetscFunctionReturn(0);
24593a40ed3dSBarry Smith   }
2460e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
2461ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr);
2462ca15aa20SStefano Zampini   ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr);
2463a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
24640dbb7854Svictorle     for (j=0; j<n; j++) {
2465ca15aa20SStefano Zampini       ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr);
2466a5ce6ee0Svictorle     }
2467a5ce6ee0Svictorle   } else {
2468ca15aa20SStefano Zampini     ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2469a5ce6ee0Svictorle   }
2470ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr);
2471ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr);
2472ca15aa20SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2473ca15aa20SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2474273d9f13SBarry Smith   PetscFunctionReturn(0);
2475273d9f13SBarry Smith }
2476273d9f13SBarry Smith 
2477e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
2478273d9f13SBarry Smith {
2479dfbe8321SBarry Smith   PetscErrorCode ierr;
2480273d9f13SBarry Smith 
2481273d9f13SBarry Smith   PetscFunctionBegin;
248218992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
248318992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
248418992e5dSStefano Zampini   if (!A->preallocated) {
2485f4259b30SLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
248618992e5dSStefano Zampini   }
24873a40ed3dSBarry Smith   PetscFunctionReturn(0);
24884b0e389bSBarry Smith }
24894b0e389bSBarry Smith 
2490ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2491ba337c44SJed Brown {
24924396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
2493ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
24944396437dSToby Isaac   PetscInt       min = PetscMin(A->rmap->n,A->cmap->n);
2495ca15aa20SStefano Zampini   PetscScalar    *aa;
2496ca15aa20SStefano Zampini   PetscErrorCode ierr;
2497ba337c44SJed Brown 
2498ba337c44SJed Brown   PetscFunctionBegin;
2499ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2500ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
2501ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
25024396437dSToby Isaac   if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]);
2503ba337c44SJed Brown   PetscFunctionReturn(0);
2504ba337c44SJed Brown }
2505ba337c44SJed Brown 
2506ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2507ba337c44SJed Brown {
2508ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2509ca15aa20SStefano Zampini   PetscScalar    *aa;
2510ca15aa20SStefano Zampini   PetscErrorCode ierr;
2511ba337c44SJed Brown 
2512ba337c44SJed Brown   PetscFunctionBegin;
2513ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2514ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
2515ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2516ba337c44SJed Brown   PetscFunctionReturn(0);
2517ba337c44SJed Brown }
2518ba337c44SJed Brown 
2519ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2520ba337c44SJed Brown {
2521ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2522ca15aa20SStefano Zampini   PetscScalar    *aa;
2523ca15aa20SStefano Zampini   PetscErrorCode ierr;
2524ba337c44SJed Brown 
2525ba337c44SJed Brown   PetscFunctionBegin;
2526ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2527ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
2528ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2529ba337c44SJed Brown   PetscFunctionReturn(0);
2530ba337c44SJed Brown }
2531284134d9SBarry Smith 
2532a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
25334222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2534a9fe9ddaSSatish Balay {
2535ee16a9a1SHong Zhang   PetscErrorCode ierr;
2536d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
25377a3c3d58SStefano Zampini   PetscBool      cisdense;
2538a9fe9ddaSSatish Balay 
2539ee16a9a1SHong Zhang   PetscFunctionBegin;
25404222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25417a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25427a3c3d58SStefano Zampini   if (!cisdense) {
25437a3c3d58SStefano Zampini     PetscBool flg;
25447a3c3d58SStefano Zampini 
2545ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25464222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25477a3c3d58SStefano Zampini   }
254818992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2549ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2550ee16a9a1SHong Zhang }
2551a9fe9ddaSSatish Balay 
2552a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2553a9fe9ddaSSatish Balay {
25546718818eSStefano Zampini   Mat_SeqDense       *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
25550805154bSBarry Smith   PetscBLASInt       m,n,k;
2556ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2557ca15aa20SStefano Zampini   PetscScalar       *cv;
2558a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2559c2916339SPierre Jolivet   PetscErrorCode    ierr;
2560a9fe9ddaSSatish Balay 
2561a9fe9ddaSSatish Balay   PetscFunctionBegin;
25628208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
25638208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2564c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
256549d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2566ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2567ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
25686718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2569ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2570ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2571ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2572ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
25736718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2574a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2575a9fe9ddaSSatish Balay }
2576a9fe9ddaSSatish Balay 
25774222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
257869f65d41SStefano Zampini {
257969f65d41SStefano Zampini   PetscErrorCode ierr;
258069f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
25817a3c3d58SStefano Zampini   PetscBool      cisdense;
258269f65d41SStefano Zampini 
258369f65d41SStefano Zampini   PetscFunctionBegin;
25844222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25857a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25867a3c3d58SStefano Zampini   if (!cisdense) {
25877a3c3d58SStefano Zampini     PetscBool flg;
25887a3c3d58SStefano Zampini 
2589ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25904222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25917a3c3d58SStefano Zampini   }
259218992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
259369f65d41SStefano Zampini   PetscFunctionReturn(0);
259469f65d41SStefano Zampini }
259569f65d41SStefano Zampini 
259669f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
259769f65d41SStefano Zampini {
259869f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
259969f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
260069f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
26016718818eSStefano Zampini   const PetscScalar *av,*bv;
26026718818eSStefano Zampini   PetscScalar       *cv;
260369f65d41SStefano Zampini   PetscBLASInt      m,n,k;
260469f65d41SStefano Zampini   PetscScalar       _DOne=1.0,_DZero=0.0;
260569f65d41SStefano Zampini   PetscErrorCode    ierr;
260669f65d41SStefano Zampini 
260769f65d41SStefano Zampini   PetscFunctionBegin;
260849d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
260949d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
261069f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
261149d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26126718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26136718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26146718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26156718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26166718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26176718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26186718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2619ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
262069f65d41SStefano Zampini   PetscFunctionReturn(0);
262169f65d41SStefano Zampini }
262269f65d41SStefano Zampini 
26234222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2624a9fe9ddaSSatish Balay {
2625ee16a9a1SHong Zhang   PetscErrorCode ierr;
2626d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
26277a3c3d58SStefano Zampini   PetscBool      cisdense;
2628a9fe9ddaSSatish Balay 
2629ee16a9a1SHong Zhang   PetscFunctionBegin;
26304222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
26317a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
26327a3c3d58SStefano Zampini   if (!cisdense) {
26337a3c3d58SStefano Zampini     PetscBool flg;
26347a3c3d58SStefano Zampini 
2635ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
26364222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
26377a3c3d58SStefano Zampini   }
263818992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2639ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2640ee16a9a1SHong Zhang }
2641a9fe9ddaSSatish Balay 
264275648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2643a9fe9ddaSSatish Balay {
2644a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2645a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
2646a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
26476718818eSStefano Zampini   const PetscScalar *av,*bv;
26486718818eSStefano Zampini   PetscScalar       *cv;
26490805154bSBarry Smith   PetscBLASInt      m,n,k;
2650a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2651c5df96a5SBarry Smith   PetscErrorCode    ierr;
2652a9fe9ddaSSatish Balay 
2653a9fe9ddaSSatish Balay   PetscFunctionBegin;
26548208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
26558208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2656c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
265749d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26586718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26596718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26606718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26616718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26626718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26636718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26646718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2665ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2666a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2667a9fe9ddaSSatish Balay }
2668985db425SBarry Smith 
26694222ddf1SHong Zhang /* ----------------------------------------------- */
26704222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
26714222ddf1SHong Zhang {
26724222ddf1SHong Zhang   PetscFunctionBegin;
26734222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
26744222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
26754222ddf1SHong Zhang   PetscFunctionReturn(0);
26764222ddf1SHong Zhang }
26774222ddf1SHong Zhang 
26784222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
26794222ddf1SHong Zhang {
26804222ddf1SHong Zhang   PetscFunctionBegin;
26814222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
26824222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
26834222ddf1SHong Zhang   PetscFunctionReturn(0);
26844222ddf1SHong Zhang }
26854222ddf1SHong Zhang 
26864222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
26874222ddf1SHong Zhang {
26884222ddf1SHong Zhang   PetscFunctionBegin;
26894222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
26904222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
26914222ddf1SHong Zhang   PetscFunctionReturn(0);
26924222ddf1SHong Zhang }
26934222ddf1SHong Zhang 
26944222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
26954222ddf1SHong Zhang {
26964222ddf1SHong Zhang   PetscErrorCode ierr;
26974222ddf1SHong Zhang   Mat_Product    *product = C->product;
26984222ddf1SHong Zhang 
26994222ddf1SHong Zhang   PetscFunctionBegin;
27004222ddf1SHong Zhang   switch (product->type) {
27014222ddf1SHong Zhang   case MATPRODUCT_AB:
27024222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr);
27034222ddf1SHong Zhang     break;
27044222ddf1SHong Zhang   case MATPRODUCT_AtB:
27054222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr);
27064222ddf1SHong Zhang     break;
27074222ddf1SHong Zhang   case MATPRODUCT_ABt:
27084222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr);
27094222ddf1SHong Zhang     break;
27106718818eSStefano Zampini   default:
27114222ddf1SHong Zhang     break;
27124222ddf1SHong Zhang   }
27134222ddf1SHong Zhang   PetscFunctionReturn(0);
27144222ddf1SHong Zhang }
27154222ddf1SHong Zhang /* ----------------------------------------------- */
27164222ddf1SHong Zhang 
2717e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2718985db425SBarry Smith {
2719985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2720985db425SBarry Smith   PetscErrorCode     ierr;
2721d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2722985db425SBarry Smith   PetscScalar        *x;
2723ca15aa20SStefano Zampini   const PetscScalar *aa;
2724985db425SBarry Smith 
2725985db425SBarry Smith   PetscFunctionBegin;
2726e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2727985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2728985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2729ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2730e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2731985db425SBarry Smith   for (i=0; i<m; i++) {
2732985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2733985db425SBarry Smith     for (j=1; j<n; j++) {
2734ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2735985db425SBarry Smith     }
2736985db425SBarry Smith   }
2737ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2738985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2739985db425SBarry Smith   PetscFunctionReturn(0);
2740985db425SBarry Smith }
2741985db425SBarry Smith 
2742e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2743985db425SBarry Smith {
2744985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2745985db425SBarry Smith   PetscErrorCode    ierr;
2746d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2747985db425SBarry Smith   PetscScalar       *x;
2748985db425SBarry Smith   PetscReal         atmp;
2749ca15aa20SStefano Zampini   const PetscScalar *aa;
2750985db425SBarry Smith 
2751985db425SBarry Smith   PetscFunctionBegin;
2752e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2753985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2754985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2755ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2756e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2757985db425SBarry Smith   for (i=0; i<m; i++) {
27589189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2759985db425SBarry Smith     for (j=1; j<n; j++) {
2760ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2761985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2762985db425SBarry Smith     }
2763985db425SBarry Smith   }
2764ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2765985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2766985db425SBarry Smith   PetscFunctionReturn(0);
2767985db425SBarry Smith }
2768985db425SBarry Smith 
2769e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2770985db425SBarry Smith {
2771985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2772985db425SBarry Smith   PetscErrorCode    ierr;
2773d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2774985db425SBarry Smith   PetscScalar       *x;
2775ca15aa20SStefano Zampini   const PetscScalar *aa;
2776985db425SBarry Smith 
2777985db425SBarry Smith   PetscFunctionBegin;
2778e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2779ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2780985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2781985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2782e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2783985db425SBarry Smith   for (i=0; i<m; i++) {
2784985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2785985db425SBarry Smith     for (j=1; j<n; j++) {
2786ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2787985db425SBarry Smith     }
2788985db425SBarry Smith   }
2789985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2790ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2791985db425SBarry Smith   PetscFunctionReturn(0);
2792985db425SBarry Smith }
2793985db425SBarry Smith 
2794637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
27958d0534beSBarry Smith {
27968d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
27978d0534beSBarry Smith   PetscErrorCode    ierr;
27988d0534beSBarry Smith   PetscScalar       *x;
2799ca15aa20SStefano Zampini   const PetscScalar *aa;
28008d0534beSBarry Smith 
28018d0534beSBarry Smith   PetscFunctionBegin;
2802e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2803ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
28048d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2805ca15aa20SStefano Zampini   ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr);
28068d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2807ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
28088d0534beSBarry Smith   PetscFunctionReturn(0);
28098d0534beSBarry Smith }
28108d0534beSBarry Smith 
281152c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
28120716a85fSBarry Smith {
28130716a85fSBarry Smith   PetscErrorCode    ierr;
28140716a85fSBarry Smith   PetscInt          i,j,m,n;
28151683a169SBarry Smith   const PetscScalar *a;
28160716a85fSBarry Smith 
28170716a85fSBarry Smith   PetscFunctionBegin;
28180716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2819580bdb30SBarry Smith   ierr = PetscArrayzero(norms,n);CHKERRQ(ierr);
28201683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
28210716a85fSBarry Smith   if (type == NORM_2) {
28220716a85fSBarry Smith     for (i=0; i<n; i++) {
28230716a85fSBarry Smith       for (j=0; j<m; j++) {
28240716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
28250716a85fSBarry Smith       }
28260716a85fSBarry Smith       a += m;
28270716a85fSBarry Smith     }
28280716a85fSBarry Smith   } else if (type == NORM_1) {
28290716a85fSBarry Smith     for (i=0; i<n; i++) {
28300716a85fSBarry Smith       for (j=0; j<m; j++) {
28310716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
28320716a85fSBarry Smith       }
28330716a85fSBarry Smith       a += m;
28340716a85fSBarry Smith     }
28350716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
28360716a85fSBarry Smith     for (i=0; i<n; i++) {
28370716a85fSBarry Smith       for (j=0; j<m; j++) {
28380716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
28390716a85fSBarry Smith       }
28400716a85fSBarry Smith       a += m;
28410716a85fSBarry Smith     }
2842ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
28431683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr);
28440716a85fSBarry Smith   if (type == NORM_2) {
28458f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
28460716a85fSBarry Smith   }
28470716a85fSBarry Smith   PetscFunctionReturn(0);
28480716a85fSBarry Smith }
28490716a85fSBarry Smith 
285073a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
285173a71a0fSBarry Smith {
285273a71a0fSBarry Smith   PetscErrorCode ierr;
285373a71a0fSBarry Smith   PetscScalar    *a;
2854637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
285573a71a0fSBarry Smith 
285673a71a0fSBarry Smith   PetscFunctionBegin;
285773a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
2858637a0070SStefano Zampini   ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr);
28598c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
2860637a0070SStefano Zampini   for (j=0; j<n; j++) {
2861637a0070SStefano Zampini     for (i=0; i<m; i++) {
2862637a0070SStefano Zampini       ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr);
2863637a0070SStefano Zampini     }
286473a71a0fSBarry Smith   }
28658c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
286673a71a0fSBarry Smith   PetscFunctionReturn(0);
286773a71a0fSBarry Smith }
286873a71a0fSBarry Smith 
28693b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
28703b49f96aSBarry Smith {
28713b49f96aSBarry Smith   PetscFunctionBegin;
28723b49f96aSBarry Smith   *missing = PETSC_FALSE;
28733b49f96aSBarry Smith   PetscFunctionReturn(0);
28743b49f96aSBarry Smith }
287573a71a0fSBarry Smith 
2876ca15aa20SStefano Zampini /* vals is not const */
2877af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
287886aefd0dSHong Zhang {
2879ca15aa20SStefano Zampini   PetscErrorCode ierr;
288086aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2881ca15aa20SStefano Zampini   PetscScalar    *v;
288286aefd0dSHong Zhang 
288386aefd0dSHong Zhang   PetscFunctionBegin;
288486aefd0dSHong Zhang   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2885ca15aa20SStefano Zampini   ierr  = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2886ca15aa20SStefano Zampini   *vals = v+col*a->lda;
2887ca15aa20SStefano Zampini   ierr  = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
288886aefd0dSHong Zhang   PetscFunctionReturn(0);
288986aefd0dSHong Zhang }
289086aefd0dSHong Zhang 
2891af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
289286aefd0dSHong Zhang {
289386aefd0dSHong Zhang   PetscFunctionBegin;
2894f4259b30SLisandro Dalcin   *vals = NULL; /* user cannot accidently use the array later */
289586aefd0dSHong Zhang   PetscFunctionReturn(0);
289686aefd0dSHong Zhang }
2897abc3b08eSStefano Zampini 
2898289bc588SBarry Smith /* -------------------------------------------------------------------*/
2899a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2900905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2901905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2902905e6a2fSBarry Smith                                         MatMult_SeqDense,
290397304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
29047c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
29057c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2906f4259b30SLisandro Dalcin                                         NULL,
2907f4259b30SLisandro Dalcin                                         NULL,
2908f4259b30SLisandro Dalcin                                         NULL,
2909f4259b30SLisandro Dalcin                                 /* 10*/ NULL,
2910905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2911905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
291241f059aeSBarry Smith                                         MatSOR_SeqDense,
2913ec8511deSBarry Smith                                         MatTranspose_SeqDense,
291497304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2915905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2916905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2917905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2918905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2919c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2920c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2921905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2922905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2923d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2924f4259b30SLisandro Dalcin                                         NULL,
2925f4259b30SLisandro Dalcin                                         NULL,
2926f4259b30SLisandro Dalcin                                         NULL,
2927f4259b30SLisandro Dalcin                                         NULL,
29284994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2929f4259b30SLisandro Dalcin                                         NULL,
2930f4259b30SLisandro Dalcin                                         NULL,
2931f4259b30SLisandro Dalcin                                         NULL,
2932f4259b30SLisandro Dalcin                                         NULL,
2933d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2934f4259b30SLisandro Dalcin                                         NULL,
2935f4259b30SLisandro Dalcin                                         NULL,
2936f4259b30SLisandro Dalcin                                         NULL,
2937f4259b30SLisandro Dalcin                                         NULL,
2938d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
29397dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2940f4259b30SLisandro Dalcin                                         NULL,
29414b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2942a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2943d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2944a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
29457d68702bSBarry Smith                                         MatShift_Basic,
2946f4259b30SLisandro Dalcin                                         NULL,
29473f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
294873a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2949f4259b30SLisandro Dalcin                                         NULL,
2950f4259b30SLisandro Dalcin                                         NULL,
2951f4259b30SLisandro Dalcin                                         NULL,
2952f4259b30SLisandro Dalcin                                         NULL,
2953f4259b30SLisandro Dalcin                                 /* 54*/ NULL,
2954f4259b30SLisandro Dalcin                                         NULL,
2955f4259b30SLisandro Dalcin                                         NULL,
2956f4259b30SLisandro Dalcin                                         NULL,
2957f4259b30SLisandro Dalcin                                         NULL,
2958023c16fcSToby Isaac                                 /* 59*/ MatCreateSubMatrix_SeqDense,
2959e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2960e03a110bSBarry Smith                                         MatView_SeqDense,
2961f4259b30SLisandro Dalcin                                         NULL,
2962f4259b30SLisandro Dalcin                                         NULL,
2963f4259b30SLisandro Dalcin                                 /* 64*/ NULL,
2964f4259b30SLisandro Dalcin                                         NULL,
2965f4259b30SLisandro Dalcin                                         NULL,
2966f4259b30SLisandro Dalcin                                         NULL,
2967f4259b30SLisandro Dalcin                                         NULL,
2968d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
2969f4259b30SLisandro Dalcin                                         NULL,
2970f4259b30SLisandro Dalcin                                         NULL,
2971f4259b30SLisandro Dalcin                                         NULL,
2972f4259b30SLisandro Dalcin                                         NULL,
2973f4259b30SLisandro Dalcin                                 /* 74*/ NULL,
2974f4259b30SLisandro Dalcin                                         NULL,
2975f4259b30SLisandro Dalcin                                         NULL,
2976f4259b30SLisandro Dalcin                                         NULL,
2977f4259b30SLisandro Dalcin                                         NULL,
2978f4259b30SLisandro Dalcin                                 /* 79*/ NULL,
2979f4259b30SLisandro Dalcin                                         NULL,
2980f4259b30SLisandro Dalcin                                         NULL,
2981f4259b30SLisandro Dalcin                                         NULL,
29825bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2983637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
29841cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2985f4259b30SLisandro Dalcin                                         NULL,
2986f4259b30SLisandro Dalcin                                         NULL,
2987f4259b30SLisandro Dalcin                                         NULL,
2988f4259b30SLisandro Dalcin                                 /* 89*/ NULL,
2989f4259b30SLisandro Dalcin                                         NULL,
2990a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
2991f4259b30SLisandro Dalcin                                         NULL,
2992f4259b30SLisandro Dalcin                                         NULL,
2993f4259b30SLisandro Dalcin                                 /* 94*/ NULL,
2994f4259b30SLisandro Dalcin                                         NULL,
2995f4259b30SLisandro Dalcin                                         NULL,
299669f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2997f4259b30SLisandro Dalcin                                         NULL,
29984222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2999f4259b30SLisandro Dalcin                                         NULL,
3000f4259b30SLisandro Dalcin                                         NULL,
3001ba337c44SJed Brown                                         MatConjugate_SeqDense,
3002f4259b30SLisandro Dalcin                                         NULL,
3003f4259b30SLisandro Dalcin                                 /*104*/ NULL,
3004ba337c44SJed Brown                                         MatRealPart_SeqDense,
3005ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
3006f4259b30SLisandro Dalcin                                         NULL,
3007f4259b30SLisandro Dalcin                                         NULL,
3008f4259b30SLisandro Dalcin                                 /*109*/ NULL,
3009f4259b30SLisandro Dalcin                                         NULL,
30108d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
3011aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
30123b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
3013f4259b30SLisandro Dalcin                                 /*114*/ NULL,
3014f4259b30SLisandro Dalcin                                         NULL,
3015f4259b30SLisandro Dalcin                                         NULL,
3016f4259b30SLisandro Dalcin                                         NULL,
3017f4259b30SLisandro Dalcin                                         NULL,
3018f4259b30SLisandro Dalcin                                 /*119*/ NULL,
3019f4259b30SLisandro Dalcin                                         NULL,
3020f4259b30SLisandro Dalcin                                         NULL,
3021f4259b30SLisandro Dalcin                                         NULL,
3022f4259b30SLisandro Dalcin                                         NULL,
3023f4259b30SLisandro Dalcin                                 /*124*/ NULL,
30245df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
3025f4259b30SLisandro Dalcin                                         NULL,
3026f4259b30SLisandro Dalcin                                         NULL,
3027f4259b30SLisandro Dalcin                                         NULL,
3028f4259b30SLisandro Dalcin                                 /*129*/ NULL,
3029f4259b30SLisandro Dalcin                                         NULL,
3030f4259b30SLisandro Dalcin                                         NULL,
303175648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
3032f4259b30SLisandro Dalcin                                         NULL,
3033f4259b30SLisandro Dalcin                                 /*134*/ NULL,
3034f4259b30SLisandro Dalcin                                         NULL,
3035f4259b30SLisandro Dalcin                                         NULL,
3036f4259b30SLisandro Dalcin                                         NULL,
3037f4259b30SLisandro Dalcin                                         NULL,
3038f4259b30SLisandro Dalcin                                 /*139*/ NULL,
3039f4259b30SLisandro Dalcin                                         NULL,
3040f4259b30SLisandro Dalcin                                         NULL,
3041f4259b30SLisandro Dalcin                                         NULL,
3042f4259b30SLisandro Dalcin                                         NULL,
30434222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
3044f4259b30SLisandro Dalcin                                 /*145*/ NULL,
3045f4259b30SLisandro Dalcin                                         NULL,
3046f4259b30SLisandro Dalcin                                         NULL
3047985db425SBarry Smith };
304890ace30eSBarry Smith 
30494b828684SBarry Smith /*@C
3050fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
3051d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
3052d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
3053289bc588SBarry Smith 
3054d083f849SBarry Smith    Collective
3055db81eaa0SLois Curfman McInnes 
305620563c6bSBarry Smith    Input Parameters:
3057db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
30580c775827SLois Curfman McInnes .  m - number of rows
305918f449edSLois Curfman McInnes .  n - number of columns
30600298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
3061dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
306220563c6bSBarry Smith 
306320563c6bSBarry Smith    Output Parameter:
306444cd7ae7SLois Curfman McInnes .  A - the matrix
306520563c6bSBarry Smith 
3066b259b22eSLois Curfman McInnes    Notes:
306718f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
306818f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
30690298fd71SBarry Smith    set data=NULL.
307018f449edSLois Curfman McInnes 
3071027ccd11SLois Curfman McInnes    Level: intermediate
3072027ccd11SLois Curfman McInnes 
307369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
307420563c6bSBarry Smith @*/
30757087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
3076289bc588SBarry Smith {
3077dfbe8321SBarry Smith   PetscErrorCode ierr;
30783b2fbd54SBarry Smith 
30793a40ed3dSBarry Smith   PetscFunctionBegin;
3080f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3081f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3082273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
3083273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
3084273d9f13SBarry Smith   PetscFunctionReturn(0);
3085273d9f13SBarry Smith }
3086273d9f13SBarry Smith 
3087273d9f13SBarry Smith /*@C
3088273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
3089273d9f13SBarry Smith 
3090d083f849SBarry Smith    Collective
3091273d9f13SBarry Smith 
3092273d9f13SBarry Smith    Input Parameters:
30931c4f3114SJed Brown +  B - the matrix
30940298fd71SBarry Smith -  data - the array (or NULL)
3095273d9f13SBarry Smith 
3096273d9f13SBarry Smith    Notes:
3097273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
3098273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
3099284134d9SBarry Smith    need not call this routine.
3100273d9f13SBarry Smith 
3101273d9f13SBarry Smith    Level: intermediate
3102273d9f13SBarry Smith 
3103ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
3104867c911aSBarry Smith 
3105273d9f13SBarry Smith @*/
31067087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
3107273d9f13SBarry Smith {
31084ac538c5SBarry Smith   PetscErrorCode ierr;
3109a23d5eceSKris Buschelman 
3110a23d5eceSKris Buschelman   PetscFunctionBegin;
3111d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
31124ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
3113a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3114a23d5eceSKris Buschelman }
3115a23d5eceSKris Buschelman 
31167087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
3117a23d5eceSKris Buschelman {
3118ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
3119dfbe8321SBarry Smith   PetscErrorCode ierr;
3120273d9f13SBarry Smith 
3121273d9f13SBarry Smith   PetscFunctionBegin;
3122616b8fbbSStefano Zampini   if (b->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
3123273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
3124a868139aSShri Abhyankar 
312534ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
312634ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
312734ef9618SShri Abhyankar 
3128ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
312986d161a7SShri Abhyankar 
3130ad16ce7aSStefano Zampini   ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr);
31319e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
31329e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3133ad16ce7aSStefano Zampini     ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr);
3134ad16ce7aSStefano Zampini     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
31352205254eSKarl Rupp 
31369e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
3137273d9f13SBarry Smith   } else { /* user-allocated storage */
31389e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3139273d9f13SBarry Smith     b->v          = data;
3140273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
3141273d9f13SBarry Smith   }
31420450473dSBarry Smith   B->assembled = PETSC_TRUE;
3143273d9f13SBarry Smith   PetscFunctionReturn(0);
3144273d9f13SBarry Smith }
3145273d9f13SBarry Smith 
314665b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
3147cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
31488baccfbdSHong Zhang {
3149d77f618aSHong Zhang   Mat               mat_elemental;
3150d77f618aSHong Zhang   PetscErrorCode    ierr;
31511683a169SBarry Smith   const PetscScalar *array;
31521683a169SBarry Smith   PetscScalar       *v_colwise;
3153d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
3154d77f618aSHong Zhang 
31558baccfbdSHong Zhang   PetscFunctionBegin;
3156d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
31571683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr);
3158d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
3159d77f618aSHong Zhang   k = 0;
3160d77f618aSHong Zhang   for (j=0; j<N; j++) {
3161d77f618aSHong Zhang     cols[j] = j;
3162d77f618aSHong Zhang     for (i=0; i<M; i++) {
3163d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
3164d77f618aSHong Zhang     }
3165d77f618aSHong Zhang   }
3166d77f618aSHong Zhang   for (i=0; i<M; i++) {
3167d77f618aSHong Zhang     rows[i] = i;
3168d77f618aSHong Zhang   }
31691683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr);
3170d77f618aSHong Zhang 
3171d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
3172d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
3173d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
3174d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
3175d77f618aSHong Zhang 
3176d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
3177d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
3178d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3179d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3180d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
3181d77f618aSHong Zhang 
3182511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
318328be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
3184d77f618aSHong Zhang   } else {
3185d77f618aSHong Zhang     *newmat = mat_elemental;
3186d77f618aSHong Zhang   }
31878baccfbdSHong Zhang   PetscFunctionReturn(0);
31888baccfbdSHong Zhang }
318965b80a83SHong Zhang #endif
31908baccfbdSHong Zhang 
319117359960SJose E. Roman PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
31921b807ce4Svictorle {
31931b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
31947422da62SJose E. Roman   PetscBool    data;
319521a2c019SBarry Smith 
31961b807ce4Svictorle   PetscFunctionBegin;
31977422da62SJose E. Roman   data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE);
31987422da62SJose E. Roman   if (!b->user_alloc && data && b->lda!=lda) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage");
3199e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
32001b807ce4Svictorle   b->lda = lda;
32011b807ce4Svictorle   PetscFunctionReturn(0);
32021b807ce4Svictorle }
32031b807ce4Svictorle 
3204d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3205d528f656SJakub Kruzik {
3206d528f656SJakub Kruzik   PetscErrorCode ierr;
3207d528f656SJakub Kruzik   PetscMPIInt    size;
3208d528f656SJakub Kruzik 
3209d528f656SJakub Kruzik   PetscFunctionBegin;
3210ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
3211d528f656SJakub Kruzik   if (size == 1) {
3212d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
3213d528f656SJakub Kruzik       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
3214d528f656SJakub Kruzik     } else {
3215d528f656SJakub Kruzik       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
3216d528f656SJakub Kruzik     }
3217d528f656SJakub Kruzik   } else {
3218d528f656SJakub Kruzik     ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
3219d528f656SJakub Kruzik   }
3220d528f656SJakub Kruzik   PetscFunctionReturn(0);
3221d528f656SJakub Kruzik }
3222d528f656SJakub Kruzik 
32236947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32246947451fSStefano Zampini {
32256947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32266947451fSStefano Zampini   PetscErrorCode ierr;
32276947451fSStefano Zampini 
32286947451fSStefano Zampini   PetscFunctionBegin;
32295ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32305ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32316947451fSStefano Zampini   if (!a->cvec) {
32326947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3233616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32346947451fSStefano Zampini   }
32356947451fSStefano Zampini   a->vecinuse = col + 1;
32366947451fSStefano Zampini   ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32376947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32386947451fSStefano Zampini   *v   = a->cvec;
32396947451fSStefano Zampini   PetscFunctionReturn(0);
32406947451fSStefano Zampini }
32416947451fSStefano Zampini 
32426947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32436947451fSStefano Zampini {
32446947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32456947451fSStefano Zampini   PetscErrorCode ierr;
32466947451fSStefano Zampini 
32476947451fSStefano Zampini   PetscFunctionBegin;
32485ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32496947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32506947451fSStefano Zampini   a->vecinuse = 0;
32516947451fSStefano Zampini   ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32526947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32536947451fSStefano Zampini   *v   = NULL;
32546947451fSStefano Zampini   PetscFunctionReturn(0);
32556947451fSStefano Zampini }
32566947451fSStefano Zampini 
32576947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32586947451fSStefano Zampini {
32596947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32606947451fSStefano Zampini   PetscErrorCode ierr;
32616947451fSStefano Zampini 
32626947451fSStefano Zampini   PetscFunctionBegin;
32635ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32645ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32656947451fSStefano Zampini   if (!a->cvec) {
32666947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3267616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32686947451fSStefano Zampini   }
32696947451fSStefano Zampini   a->vecinuse = col + 1;
32706947451fSStefano Zampini   ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32716947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32726947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
32736947451fSStefano Zampini   *v   = a->cvec;
32746947451fSStefano Zampini   PetscFunctionReturn(0);
32756947451fSStefano Zampini }
32766947451fSStefano Zampini 
32776947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32786947451fSStefano Zampini {
32796947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32806947451fSStefano Zampini   PetscErrorCode ierr;
32816947451fSStefano Zampini 
32826947451fSStefano Zampini   PetscFunctionBegin;
32835ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32846947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32856947451fSStefano Zampini   a->vecinuse = 0;
32866947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32876947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
32886947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32896947451fSStefano Zampini   *v   = NULL;
32906947451fSStefano Zampini   PetscFunctionReturn(0);
32916947451fSStefano Zampini }
32926947451fSStefano Zampini 
32936947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
32946947451fSStefano Zampini {
32956947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32966947451fSStefano Zampini   PetscErrorCode ierr;
32976947451fSStefano Zampini 
32986947451fSStefano Zampini   PetscFunctionBegin;
32995ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
33005ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
33016947451fSStefano Zampini   if (!a->cvec) {
33026947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3303616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
33046947451fSStefano Zampini   }
33056947451fSStefano Zampini   a->vecinuse = col + 1;
33066947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33076947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
33086947451fSStefano Zampini   *v   = a->cvec;
33096947451fSStefano Zampini   PetscFunctionReturn(0);
33106947451fSStefano Zampini }
33116947451fSStefano Zampini 
33126947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
33136947451fSStefano Zampini {
33146947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33156947451fSStefano Zampini   PetscErrorCode ierr;
33166947451fSStefano Zampini 
33176947451fSStefano Zampini   PetscFunctionBegin;
33185ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
33196947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
33206947451fSStefano Zampini   a->vecinuse = 0;
33216947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33226947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
33236947451fSStefano Zampini   *v   = NULL;
33246947451fSStefano Zampini   PetscFunctionReturn(0);
33256947451fSStefano Zampini }
33266947451fSStefano Zampini 
33275ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
33285ea7661aSPierre Jolivet {
33295ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33305ea7661aSPierre Jolivet   PetscErrorCode ierr;
33315ea7661aSPierre Jolivet 
33325ea7661aSPierre Jolivet   PetscFunctionBegin;
33335ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
33345ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
33355ea7661aSPierre Jolivet   if (a->cmat && cend-cbegin != a->cmat->cmap->N) {
33365ea7661aSPierre Jolivet     ierr = MatDestroy(&a->cmat);CHKERRQ(ierr);
33375ea7661aSPierre Jolivet   }
33385ea7661aSPierre Jolivet   if (!a->cmat) {
3339616b8fbbSStefano Zampini     ierr = MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->v + (size_t)cbegin * (size_t)a->lda,&a->cmat);CHKERRQ(ierr);
3340616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr);
33415ea7661aSPierre Jolivet   } else {
3342616b8fbbSStefano Zampini     ierr = MatDensePlaceArray(a->cmat,a->v + (size_t)cbegin * (size_t)a->lda);CHKERRQ(ierr);
33435ea7661aSPierre Jolivet   }
3344616b8fbbSStefano Zampini   ierr = MatDenseSetLDA(a->cmat,a->lda);CHKERRQ(ierr);
33455ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
33465ea7661aSPierre Jolivet   *v = a->cmat;
33475ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33485ea7661aSPierre Jolivet }
33495ea7661aSPierre Jolivet 
33505ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v)
33515ea7661aSPierre Jolivet {
33525ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33535ea7661aSPierre Jolivet   PetscErrorCode ierr;
33545ea7661aSPierre Jolivet 
33555ea7661aSPierre Jolivet   PetscFunctionBegin;
33565ea7661aSPierre Jolivet   if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first");
33575ea7661aSPierre Jolivet   if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix");
3358616b8fbbSStefano Zampini   if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()");
33595ea7661aSPierre Jolivet   a->matinuse = 0;
33605ea7661aSPierre Jolivet   ierr = MatDenseResetArray(a->cmat);CHKERRQ(ierr);
33615ea7661aSPierre Jolivet   *v   = NULL;
33625ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33635ea7661aSPierre Jolivet }
33645ea7661aSPierre Jolivet 
33650bad9183SKris Buschelman /*MC
3366fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
33670bad9183SKris Buschelman 
33680bad9183SKris Buschelman    Options Database Keys:
33690bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
33700bad9183SKris Buschelman 
33710bad9183SKris Buschelman   Level: beginner
33720bad9183SKris Buschelman 
337389665df3SBarry Smith .seealso: MatCreateSeqDense()
337489665df3SBarry Smith 
33750bad9183SKris Buschelman M*/
3376ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
3377273d9f13SBarry Smith {
3378273d9f13SBarry Smith   Mat_SeqDense   *b;
3379dfbe8321SBarry Smith   PetscErrorCode ierr;
33807c334f02SBarry Smith   PetscMPIInt    size;
3381273d9f13SBarry Smith 
3382273d9f13SBarry Smith   PetscFunctionBegin;
3383ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
3384e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
338555659b69SBarry Smith 
3386b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
3387549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
338844cd7ae7SLois Curfman McInnes   B->data = (void*)b;
338918f449edSLois Curfman McInnes 
3390273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
33914e220ebcSLois Curfman McInnes 
33924905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense);CHKERRQ(ierr);
33934905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
33944905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense);CHKERRQ(ierr);
339549a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr);
3396ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr);
3397bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
33988572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3399d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
3400d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
3401d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr);
34028572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
3403715b7558SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
34046947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
34056947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3406bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
34078baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
34088baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
34098baccfbdSHong Zhang #endif
3410d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
3411d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr);
3412d24d4204SJose E. Roman #endif
34132bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
34142bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr);
34154222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34164222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
3417637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34182bf066beSStefano Zampini #endif
3419bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
34204222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
34214222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34224222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
34234222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
342496e6d5c4SRichard Tran Mills 
3425af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr);
3426af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr);
34276947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr);
34286947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr);
34296947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr);
34306947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr);
34316947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr);
34326947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr);
34335ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense);CHKERRQ(ierr);
34345ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense);CHKERRQ(ierr);
343517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
34363a40ed3dSBarry Smith   PetscFunctionReturn(0);
3437289bc588SBarry Smith }
343886aefd0dSHong Zhang 
343986aefd0dSHong Zhang /*@C
3440af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
344186aefd0dSHong Zhang 
344286aefd0dSHong Zhang    Not Collective
344386aefd0dSHong Zhang 
34445ea7661aSPierre Jolivet    Input Parameters:
344586aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
344686aefd0dSHong Zhang -  col - column index
344786aefd0dSHong Zhang 
344886aefd0dSHong Zhang    Output Parameter:
344986aefd0dSHong Zhang .  vals - pointer to the data
345086aefd0dSHong Zhang 
345186aefd0dSHong Zhang    Level: intermediate
345286aefd0dSHong Zhang 
345386aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
345486aefd0dSHong Zhang @*/
345586aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
345686aefd0dSHong Zhang {
345786aefd0dSHong Zhang   PetscErrorCode ierr;
345886aefd0dSHong Zhang 
345986aefd0dSHong Zhang   PetscFunctionBegin;
3460d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3461d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3462d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
346386aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr);
346486aefd0dSHong Zhang   PetscFunctionReturn(0);
346586aefd0dSHong Zhang }
346686aefd0dSHong Zhang 
346786aefd0dSHong Zhang /*@C
346886aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
346986aefd0dSHong Zhang 
347086aefd0dSHong Zhang    Not Collective
347186aefd0dSHong Zhang 
347286aefd0dSHong Zhang    Input Parameter:
347386aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
347486aefd0dSHong Zhang 
347586aefd0dSHong Zhang    Output Parameter:
347686aefd0dSHong Zhang .  vals - pointer to the data
347786aefd0dSHong Zhang 
347886aefd0dSHong Zhang    Level: intermediate
347986aefd0dSHong Zhang 
348086aefd0dSHong Zhang .seealso: MatDenseGetColumn()
348186aefd0dSHong Zhang @*/
348286aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
348386aefd0dSHong Zhang {
348486aefd0dSHong Zhang   PetscErrorCode ierr;
348586aefd0dSHong Zhang 
348686aefd0dSHong Zhang   PetscFunctionBegin;
3487d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3488d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
348986aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr);
349086aefd0dSHong Zhang   PetscFunctionReturn(0);
349186aefd0dSHong Zhang }
34926947451fSStefano Zampini 
34936947451fSStefano Zampini /*@C
34946947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
34956947451fSStefano Zampini 
34966947451fSStefano Zampini    Collective
34976947451fSStefano Zampini 
34985ea7661aSPierre Jolivet    Input Parameters:
34996947451fSStefano Zampini +  mat - the Mat object
35006947451fSStefano Zampini -  col - the column index
35016947451fSStefano Zampini 
35026947451fSStefano Zampini    Output Parameter:
35036947451fSStefano Zampini .  v - the vector
35046947451fSStefano Zampini 
35056947451fSStefano Zampini    Notes:
35066947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
35076947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
35086947451fSStefano Zampini 
35096947451fSStefano Zampini    Level: intermediate
35106947451fSStefano Zampini 
35116947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35126947451fSStefano Zampini @*/
35136947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
35146947451fSStefano Zampini {
35156947451fSStefano Zampini   PetscErrorCode ierr;
35166947451fSStefano Zampini 
35176947451fSStefano Zampini   PetscFunctionBegin;
35186947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35196947451fSStefano Zampini   PetscValidType(A,1);
35206947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35216947451fSStefano Zampini   PetscValidPointer(v,3);
35226947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35236947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35246947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35256947451fSStefano Zampini   PetscFunctionReturn(0);
35266947451fSStefano Zampini }
35276947451fSStefano Zampini 
35286947451fSStefano Zampini /*@C
35296947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
35306947451fSStefano Zampini 
35316947451fSStefano Zampini    Collective
35326947451fSStefano Zampini 
35335ea7661aSPierre Jolivet    Input Parameters:
35346947451fSStefano Zampini +  mat - the Mat object
35356947451fSStefano Zampini .  col - the column index
35366947451fSStefano Zampini -  v - the Vec object
35376947451fSStefano Zampini 
35386947451fSStefano Zampini    Level: intermediate
35396947451fSStefano Zampini 
35406947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35416947451fSStefano Zampini @*/
35426947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
35436947451fSStefano Zampini {
35446947451fSStefano Zampini   PetscErrorCode ierr;
35456947451fSStefano Zampini 
35466947451fSStefano Zampini   PetscFunctionBegin;
35476947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35486947451fSStefano Zampini   PetscValidType(A,1);
35496947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35506947451fSStefano Zampini   PetscValidPointer(v,3);
35516947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35526947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35536947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35546947451fSStefano Zampini   PetscFunctionReturn(0);
35556947451fSStefano Zampini }
35566947451fSStefano Zampini 
35576947451fSStefano Zampini /*@C
35586947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
35596947451fSStefano Zampini 
35606947451fSStefano Zampini    Collective
35616947451fSStefano Zampini 
35625ea7661aSPierre Jolivet    Input Parameters:
35636947451fSStefano Zampini +  mat - the Mat object
35646947451fSStefano Zampini -  col - the column index
35656947451fSStefano Zampini 
35666947451fSStefano Zampini    Output Parameter:
35676947451fSStefano Zampini .  v - the vector
35686947451fSStefano Zampini 
35696947451fSStefano Zampini    Notes:
35706947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
35716947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
35726947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
35736947451fSStefano Zampini 
35746947451fSStefano Zampini    Level: intermediate
35756947451fSStefano Zampini 
35766947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35776947451fSStefano Zampini @*/
35786947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
35796947451fSStefano Zampini {
35806947451fSStefano Zampini   PetscErrorCode ierr;
35816947451fSStefano Zampini 
35826947451fSStefano Zampini   PetscFunctionBegin;
35836947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35846947451fSStefano Zampini   PetscValidType(A,1);
35856947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35866947451fSStefano Zampini   PetscValidPointer(v,3);
35876947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35886947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35896947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35906947451fSStefano Zampini   PetscFunctionReturn(0);
35916947451fSStefano Zampini }
35926947451fSStefano Zampini 
35936947451fSStefano Zampini /*@C
35946947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
35956947451fSStefano Zampini 
35966947451fSStefano Zampini    Collective
35976947451fSStefano Zampini 
35985ea7661aSPierre Jolivet    Input Parameters:
35996947451fSStefano Zampini +  mat - the Mat object
36006947451fSStefano Zampini .  col - the column index
36016947451fSStefano Zampini -  v - the Vec object
36026947451fSStefano Zampini 
36036947451fSStefano Zampini    Level: intermediate
36046947451fSStefano Zampini 
36056947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
36066947451fSStefano Zampini @*/
36076947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
36086947451fSStefano Zampini {
36096947451fSStefano Zampini   PetscErrorCode ierr;
36106947451fSStefano Zampini 
36116947451fSStefano Zampini   PetscFunctionBegin;
36126947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36136947451fSStefano Zampini   PetscValidType(A,1);
36146947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36156947451fSStefano Zampini   PetscValidPointer(v,3);
36166947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36176947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36186947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36196947451fSStefano Zampini   PetscFunctionReturn(0);
36206947451fSStefano Zampini }
36216947451fSStefano Zampini 
36226947451fSStefano Zampini /*@C
36236947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
36246947451fSStefano Zampini 
36256947451fSStefano Zampini    Collective
36266947451fSStefano Zampini 
36275ea7661aSPierre Jolivet    Input Parameters:
36286947451fSStefano Zampini +  mat - the Mat object
36296947451fSStefano Zampini -  col - the column index
36306947451fSStefano Zampini 
36316947451fSStefano Zampini    Output Parameter:
36326947451fSStefano Zampini .  v - the vector
36336947451fSStefano Zampini 
36346947451fSStefano Zampini    Notes:
36356947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
36366947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
36376947451fSStefano Zampini 
36386947451fSStefano Zampini    Level: intermediate
36396947451fSStefano Zampini 
36406947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
36416947451fSStefano Zampini @*/
36426947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
36436947451fSStefano Zampini {
36446947451fSStefano Zampini   PetscErrorCode ierr;
36456947451fSStefano Zampini 
36466947451fSStefano Zampini   PetscFunctionBegin;
36476947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36486947451fSStefano Zampini   PetscValidType(A,1);
36496947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36506947451fSStefano Zampini   PetscValidPointer(v,3);
36516947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36526947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36536947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36546947451fSStefano Zampini   PetscFunctionReturn(0);
36556947451fSStefano Zampini }
36566947451fSStefano Zampini 
36576947451fSStefano Zampini /*@C
36586947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
36596947451fSStefano Zampini 
36606947451fSStefano Zampini    Collective
36616947451fSStefano Zampini 
36625ea7661aSPierre Jolivet    Input Parameters:
36636947451fSStefano Zampini +  mat - the Mat object
36646947451fSStefano Zampini .  col - the column index
36656947451fSStefano Zampini -  v - the Vec object
36666947451fSStefano Zampini 
36676947451fSStefano Zampini    Level: intermediate
36686947451fSStefano Zampini 
36696947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
36706947451fSStefano Zampini @*/
36716947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
36726947451fSStefano Zampini {
36736947451fSStefano Zampini   PetscErrorCode ierr;
36746947451fSStefano Zampini 
36756947451fSStefano Zampini   PetscFunctionBegin;
36766947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36776947451fSStefano Zampini   PetscValidType(A,1);
36786947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36796947451fSStefano Zampini   PetscValidPointer(v,3);
36806947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36816947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36826947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36836947451fSStefano Zampini   PetscFunctionReturn(0);
36846947451fSStefano Zampini }
36855ea7661aSPierre Jolivet 
36865ea7661aSPierre Jolivet /*@C
36875ea7661aSPierre Jolivet    MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat.
36885ea7661aSPierre Jolivet 
36895ea7661aSPierre Jolivet    Collective
36905ea7661aSPierre Jolivet 
36915ea7661aSPierre Jolivet    Input Parameters:
36925ea7661aSPierre Jolivet +  mat - the Mat object
36935ea7661aSPierre Jolivet .  cbegin - the first index in the block
36945ea7661aSPierre Jolivet -  cend - the last index in the block
36955ea7661aSPierre Jolivet 
36965ea7661aSPierre Jolivet    Output Parameter:
36975ea7661aSPierre Jolivet .  v - the matrix
36985ea7661aSPierre Jolivet 
36995ea7661aSPierre Jolivet    Notes:
37005ea7661aSPierre Jolivet      The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed.
37015ea7661aSPierre Jolivet 
37025ea7661aSPierre Jolivet    Level: intermediate
37035ea7661aSPierre Jolivet 
37045ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseRestoreSubMatrix()
37055ea7661aSPierre Jolivet @*/
37065ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
37075ea7661aSPierre Jolivet {
37085ea7661aSPierre Jolivet   PetscErrorCode ierr;
37095ea7661aSPierre Jolivet 
37105ea7661aSPierre Jolivet   PetscFunctionBegin;
37115ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37125ea7661aSPierre Jolivet   PetscValidType(A,1);
37135ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cbegin,2);
37145ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cend,3);
37155ea7661aSPierre Jolivet   PetscValidPointer(v,4);
37165ea7661aSPierre Jolivet   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
37175ea7661aSPierre Jolivet   if (cbegin < 0 || cbegin > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %D, should be in [0,%D)",cbegin,A->cmap->N);
3718616b8fbbSStefano Zampini   if (cend < cbegin || cend > A->cmap->N) SETERRQ3(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %D, should be in [%D,%D)",cend,cbegin,A->cmap->N);
37195ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v));CHKERRQ(ierr);
37205ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37215ea7661aSPierre Jolivet }
37225ea7661aSPierre Jolivet 
37235ea7661aSPierre Jolivet /*@C
37245ea7661aSPierre Jolivet    MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix().
37255ea7661aSPierre Jolivet 
37265ea7661aSPierre Jolivet    Collective
37275ea7661aSPierre Jolivet 
37285ea7661aSPierre Jolivet    Input Parameters:
37295ea7661aSPierre Jolivet +  mat - the Mat object
37305ea7661aSPierre Jolivet -  v - the Mat object
37315ea7661aSPierre Jolivet 
37325ea7661aSPierre Jolivet    Level: intermediate
37335ea7661aSPierre Jolivet 
37345ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseGetSubMatrix()
37355ea7661aSPierre Jolivet @*/
37365ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v)
37375ea7661aSPierre Jolivet {
37385ea7661aSPierre Jolivet   PetscErrorCode ierr;
37395ea7661aSPierre Jolivet 
37405ea7661aSPierre Jolivet   PetscFunctionBegin;
37415ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37425ea7661aSPierre Jolivet   PetscValidType(A,1);
37435ea7661aSPierre Jolivet   PetscValidPointer(v,2);
37445ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v));CHKERRQ(ierr);
37455ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37465ea7661aSPierre Jolivet }
3747