1be1d678aSKris Buschelman 267e560aaSBarry Smith /* 367e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 467e560aaSBarry Smith */ 5289bc588SBarry Smith 6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <petscblaslapack.h> 8289bc588SBarry Smith 96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> 10b2573a8aSBarry Smith 11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian) 128c178816SStefano Zampini { 138c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 148c178816SStefano Zampini PetscInt j, k, n = A->rmap->n; 15ca15aa20SStefano Zampini PetscScalar *v; 16ca15aa20SStefano Zampini PetscErrorCode ierr; 178c178816SStefano Zampini 188c178816SStefano Zampini PetscFunctionBegin; 198c178816SStefano Zampini if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix"); 20ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 218c178816SStefano Zampini if (!hermitian) { 228c178816SStefano Zampini for (k=0;k<n;k++) { 238c178816SStefano Zampini for (j=k;j<n;j++) { 24ca15aa20SStefano Zampini v[j*mat->lda + k] = v[k*mat->lda + j]; 258c178816SStefano Zampini } 268c178816SStefano Zampini } 278c178816SStefano Zampini } else { 288c178816SStefano Zampini for (k=0;k<n;k++) { 298c178816SStefano Zampini for (j=k;j<n;j++) { 30ca15aa20SStefano Zampini v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]); 318c178816SStefano Zampini } 328c178816SStefano Zampini } 338c178816SStefano Zampini } 34ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 358c178816SStefano Zampini PetscFunctionReturn(0); 368c178816SStefano Zampini } 378c178816SStefano Zampini 3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A) 398c178816SStefano Zampini { 408c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 418c178816SStefano Zampini PetscErrorCode ierr; 428c178816SStefano Zampini PetscBLASInt info,n; 438c178816SStefano Zampini 448c178816SStefano Zampini PetscFunctionBegin; 458c178816SStefano Zampini if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 468c178816SStefano Zampini ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 478c178816SStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 488c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 498c178816SStefano Zampini if (!mat->fwork) { 508c178816SStefano Zampini mat->lfwork = n; 518c178816SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 528c178816SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 538c178816SStefano Zampini } 5400121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 558c178816SStefano Zampini PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 5600121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 57ca15aa20SStefano Zampini ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 588c178816SStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 598c178816SStefano Zampini if (A->spd) { 6000121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 618c178816SStefano Zampini PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info)); 6200121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 638c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr); 648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX) 658c178816SStefano Zampini } else if (A->hermitian) { 668c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 678c178816SStefano Zampini if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 6800121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 698c178816SStefano Zampini PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 7000121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 718c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr); 728c178816SStefano Zampini #endif 738c178816SStefano Zampini } else { /* symmetric case */ 748c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 758c178816SStefano Zampini if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 7600121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 778c178816SStefano Zampini PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 7800121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 798c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr); 808c178816SStefano Zampini } 818c178816SStefano Zampini if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1); 82ca15aa20SStefano Zampini ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 838c178816SStefano Zampini } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 848c178816SStefano Zampini 858c178816SStefano Zampini A->ops->solve = NULL; 868c178816SStefano Zampini A->ops->matsolve = NULL; 878c178816SStefano Zampini A->ops->solvetranspose = NULL; 888c178816SStefano Zampini A->ops->matsolvetranspose = NULL; 898c178816SStefano Zampini A->ops->solveadd = NULL; 908c178816SStefano Zampini A->ops->solvetransposeadd = NULL; 918c178816SStefano Zampini A->factortype = MAT_FACTOR_NONE; 928c178816SStefano Zampini ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 938c178816SStefano Zampini PetscFunctionReturn(0); 948c178816SStefano Zampini } 958c178816SStefano Zampini 963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 973f49a652SStefano Zampini { 983f49a652SStefano Zampini PetscErrorCode ierr; 993f49a652SStefano Zampini Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1003f49a652SStefano Zampini PetscInt m = l->lda, n = A->cmap->n,r = A->rmap->n, i,j; 101ca15aa20SStefano Zampini PetscScalar *slot,*bb,*v; 1023f49a652SStefano Zampini const PetscScalar *xx; 1033f49a652SStefano Zampini 1043f49a652SStefano Zampini PetscFunctionBegin; 10576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1063f49a652SStefano Zampini for (i=0; i<N; i++) { 1073f49a652SStefano Zampini if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 1083f49a652SStefano Zampini if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n); 1093f49a652SStefano Zampini if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n); 1103f49a652SStefano Zampini } 11176bd3646SJed Brown } 112ca15aa20SStefano Zampini if (!N) PetscFunctionReturn(0); 1133f49a652SStefano Zampini 1143f49a652SStefano Zampini /* fix right hand side if needed */ 1153f49a652SStefano Zampini if (x && b) { 1166c4d906cSStefano Zampini Vec xt; 1176c4d906cSStefano Zampini 1186c4d906cSStefano Zampini if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 1196c4d906cSStefano Zampini ierr = VecDuplicate(x,&xt);CHKERRQ(ierr); 1206c4d906cSStefano Zampini ierr = VecCopy(x,xt);CHKERRQ(ierr); 1216c4d906cSStefano Zampini ierr = VecScale(xt,-1.0);CHKERRQ(ierr); 1226c4d906cSStefano Zampini ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr); 1236c4d906cSStefano Zampini ierr = VecDestroy(&xt);CHKERRQ(ierr); 1243f49a652SStefano Zampini ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 1253f49a652SStefano Zampini ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 1263f49a652SStefano Zampini for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 1273f49a652SStefano Zampini ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 1283f49a652SStefano Zampini ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 1293f49a652SStefano Zampini } 1303f49a652SStefano Zampini 131ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 1323f49a652SStefano Zampini for (i=0; i<N; i++) { 133ca15aa20SStefano Zampini slot = v + rows[i]*m; 134580bdb30SBarry Smith ierr = PetscArrayzero(slot,r);CHKERRQ(ierr); 1353f49a652SStefano Zampini } 1363f49a652SStefano Zampini for (i=0; i<N; i++) { 137ca15aa20SStefano Zampini slot = v + rows[i]; 1383f49a652SStefano Zampini for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 1393f49a652SStefano Zampini } 1403f49a652SStefano Zampini if (diag != 0.0) { 1413f49a652SStefano Zampini if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 1423f49a652SStefano Zampini for (i=0; i<N; i++) { 143ca15aa20SStefano Zampini slot = v + (m+1)*rows[i]; 1443f49a652SStefano Zampini *slot = diag; 1453f49a652SStefano Zampini } 1463f49a652SStefano Zampini } 147ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 1483f49a652SStefano Zampini PetscFunctionReturn(0); 1493f49a652SStefano Zampini } 1503f49a652SStefano Zampini 151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C) 152abc3b08eSStefano Zampini { 153abc3b08eSStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)(C->data); 154abc3b08eSStefano Zampini PetscErrorCode ierr; 155abc3b08eSStefano Zampini 156abc3b08eSStefano Zampini PetscFunctionBegin; 157ca15aa20SStefano Zampini if (c->ptapwork) { 158ca15aa20SStefano Zampini ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr); 159ca15aa20SStefano Zampini ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr); 1604222ddf1SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first"); 161abc3b08eSStefano Zampini PetscFunctionReturn(0); 162abc3b08eSStefano Zampini } 163abc3b08eSStefano Zampini 1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C) 165abc3b08eSStefano Zampini { 166abc3b08eSStefano Zampini Mat_SeqDense *c; 1677a3c3d58SStefano Zampini PetscBool cisdense; 168abc3b08eSStefano Zampini PetscErrorCode ierr; 169abc3b08eSStefano Zampini 170abc3b08eSStefano Zampini PetscFunctionBegin; 1714222ddf1SHong Zhang ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr); 1727a3c3d58SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 1737a3c3d58SStefano Zampini if (!cisdense) { 1747a3c3d58SStefano Zampini PetscBool flg; 1757a3c3d58SStefano Zampini 1767a3c3d58SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr); 1774222ddf1SHong Zhang ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr); 1787a3c3d58SStefano Zampini } 1797a3c3d58SStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 1804222ddf1SHong Zhang c = (Mat_SeqDense*)C->data; 181ca15aa20SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr); 182ca15aa20SStefano Zampini ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr); 1837a3c3d58SStefano Zampini ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr); 1847a3c3d58SStefano Zampini ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr); 185abc3b08eSStefano Zampini PetscFunctionReturn(0); 186abc3b08eSStefano Zampini } 187abc3b08eSStefano Zampini 188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 189b49cda9fSStefano Zampini { 190a13144ffSStefano Zampini Mat B = NULL; 191b49cda9fSStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 192b49cda9fSStefano Zampini Mat_SeqDense *b; 193b49cda9fSStefano Zampini PetscErrorCode ierr; 194b49cda9fSStefano Zampini PetscInt *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i; 1952e5835c6SStefano Zampini const MatScalar *av; 196a13144ffSStefano Zampini PetscBool isseqdense; 197b49cda9fSStefano Zampini 198b49cda9fSStefano Zampini PetscFunctionBegin; 199a13144ffSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 200a13144ffSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr); 201a32993e3SJed Brown if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name); 202a13144ffSStefano Zampini } 203a13144ffSStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 204b49cda9fSStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 205b49cda9fSStefano Zampini ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 206b49cda9fSStefano Zampini ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr); 207b49cda9fSStefano Zampini ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 208b49cda9fSStefano Zampini b = (Mat_SeqDense*)(B->data); 209a13144ffSStefano Zampini } else { 210a13144ffSStefano Zampini b = (Mat_SeqDense*)((*newmat)->data); 211580bdb30SBarry Smith ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr); 212a13144ffSStefano Zampini } 2132e5835c6SStefano Zampini ierr = MatSeqAIJGetArrayRead(A,&av);CHKERRQ(ierr); 214b49cda9fSStefano Zampini for (i=0; i<m; i++) { 215b49cda9fSStefano Zampini PetscInt j; 216b49cda9fSStefano Zampini for (j=0;j<ai[1]-ai[0];j++) { 217b49cda9fSStefano Zampini b->v[*aj*m+i] = *av; 218b49cda9fSStefano Zampini aj++; 219b49cda9fSStefano Zampini av++; 220b49cda9fSStefano Zampini } 221b49cda9fSStefano Zampini ai++; 222b49cda9fSStefano Zampini } 2232e5835c6SStefano Zampini ierr = MatSeqAIJRestoreArrayRead(A,&av);CHKERRQ(ierr); 224b49cda9fSStefano Zampini 225511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 226a13144ffSStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 227a13144ffSStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 22828be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 229b49cda9fSStefano Zampini } else { 230a13144ffSStefano Zampini if (B) *newmat = B; 231a13144ffSStefano Zampini ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232a13144ffSStefano Zampini ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233b49cda9fSStefano Zampini } 234b49cda9fSStefano Zampini PetscFunctionReturn(0); 235b49cda9fSStefano Zampini } 236b49cda9fSStefano Zampini 237cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 2386a63e612SBarry Smith { 2396d4ec7b0SPierre Jolivet Mat B = NULL; 2406a63e612SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2416a63e612SBarry Smith PetscErrorCode ierr; 2429399e1b8SMatthew G. Knepley PetscInt i, j; 2439399e1b8SMatthew G. Knepley PetscInt *rows, *nnz; 2449399e1b8SMatthew G. Knepley MatScalar *aa = a->v, *vals; 2456a63e612SBarry Smith 2466a63e612SBarry Smith PetscFunctionBegin; 2476d4ec7b0SPierre Jolivet ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr); 2486d4ec7b0SPierre Jolivet if (reuse != MAT_REUSE_MATRIX) { 249ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 2506a63e612SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2516a63e612SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2529399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2536d4ec7b0SPierre Jolivet for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i]; 2546a63e612SBarry Smith aa += a->lda; 2556a63e612SBarry Smith } 2569399e1b8SMatthew G. Knepley ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr); 2576d4ec7b0SPierre Jolivet } else B = *newmat; 2589399e1b8SMatthew G. Knepley aa = a->v; 2599399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2609399e1b8SMatthew G. Knepley PetscInt numRows = 0; 2616d4ec7b0SPierre Jolivet for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];} 2629399e1b8SMatthew G. Knepley ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr); 2639399e1b8SMatthew G. Knepley aa += a->lda; 2649399e1b8SMatthew G. Knepley } 2659399e1b8SMatthew G. Knepley ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr); 2666a63e612SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2676a63e612SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2686a63e612SBarry Smith 269511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 27028be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 2716d4ec7b0SPierre Jolivet } else if (reuse != MAT_REUSE_MATRIX) *newmat = B; 2726a63e612SBarry Smith PetscFunctionReturn(0); 2736a63e612SBarry Smith } 2746a63e612SBarry Smith 275ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 2761987afe7SBarry Smith { 2771987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 278ca15aa20SStefano Zampini const PetscScalar *xv; 279ca15aa20SStefano Zampini PetscScalar *yv; 28023fff9afSBarry Smith PetscBLASInt N,m,ldax = 0,lday = 0,one = 1; 281efee365bSSatish Balay PetscErrorCode ierr; 2823a40ed3dSBarry Smith 2833a40ed3dSBarry Smith PetscFunctionBegin; 284ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr); 285ca15aa20SStefano Zampini ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr); 286c5df96a5SBarry Smith ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr); 287c5df96a5SBarry Smith ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr); 288c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr); 289c5df96a5SBarry Smith ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr); 290a5ce6ee0Svictorle if (ldax>m || lday>m) { 291ca15aa20SStefano Zampini PetscInt j; 292ca15aa20SStefano Zampini 293d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 294ca15aa20SStefano Zampini PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one)); 295a5ce6ee0Svictorle } 296a5ce6ee0Svictorle } else { 297ca15aa20SStefano Zampini PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one)); 298a5ce6ee0Svictorle } 299ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr); 300ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr); 301ca0c957dSBarry Smith ierr = PetscLogFlops(PetscMax(2.0*N-1,0));CHKERRQ(ierr); 3023a40ed3dSBarry Smith PetscFunctionReturn(0); 3031987afe7SBarry Smith } 3041987afe7SBarry Smith 305e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 306289bc588SBarry Smith { 307ca15aa20SStefano Zampini PetscLogDouble N = A->rmap->n*A->cmap->n; 3083a40ed3dSBarry Smith 3093a40ed3dSBarry Smith PetscFunctionBegin; 3104e220ebcSLois Curfman McInnes info->block_size = 1.0; 311ca15aa20SStefano Zampini info->nz_allocated = N; 312ca15aa20SStefano Zampini info->nz_used = N; 313ca15aa20SStefano Zampini info->nz_unneeded = 0; 314ca15aa20SStefano Zampini info->assemblies = A->num_ass; 3154e220ebcSLois Curfman McInnes info->mallocs = 0; 3167adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 3174e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 3184e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 3194e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 3203a40ed3dSBarry Smith PetscFunctionReturn(0); 321289bc588SBarry Smith } 322289bc588SBarry Smith 323637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 32480cd9d93SLois Curfman McInnes { 325273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 326ca15aa20SStefano Zampini PetscScalar *v; 327efee365bSSatish Balay PetscErrorCode ierr; 32823fff9afSBarry Smith PetscBLASInt one = 1,j,nz,lda = 0; 32980cd9d93SLois Curfman McInnes 3303a40ed3dSBarry Smith PetscFunctionBegin; 331ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 332c5df96a5SBarry Smith ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr); 333d0f46423SBarry Smith if (lda>A->rmap->n) { 334c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr); 335d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 336ca15aa20SStefano Zampini PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one)); 337a5ce6ee0Svictorle } 338a5ce6ee0Svictorle } else { 339c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr); 340ca15aa20SStefano Zampini PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one)); 341a5ce6ee0Svictorle } 342efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 343ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 3443a40ed3dSBarry Smith PetscFunctionReturn(0); 34580cd9d93SLois Curfman McInnes } 34680cd9d93SLois Curfman McInnes 347e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool *fl) 3481cbb95d3SBarry Smith { 3491cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 350ca15aa20SStefano Zampini PetscInt i,j,m = A->rmap->n,N = a->lda; 351ca15aa20SStefano Zampini const PetscScalar *v; 352ca15aa20SStefano Zampini PetscErrorCode ierr; 3531cbb95d3SBarry Smith 3541cbb95d3SBarry Smith PetscFunctionBegin; 3551cbb95d3SBarry Smith *fl = PETSC_FALSE; 356d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 357ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr); 3581cbb95d3SBarry Smith for (i=0; i<m; i++) { 359ca15aa20SStefano Zampini for (j=i; j<m; j++) { 360637a0070SStefano Zampini if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) { 361637a0070SStefano Zampini goto restore; 3621cbb95d3SBarry Smith } 3631cbb95d3SBarry Smith } 364637a0070SStefano Zampini } 3651cbb95d3SBarry Smith *fl = PETSC_TRUE; 366637a0070SStefano Zampini restore: 367637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr); 368637a0070SStefano Zampini PetscFunctionReturn(0); 369637a0070SStefano Zampini } 370637a0070SStefano Zampini 371637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool *fl) 372637a0070SStefano Zampini { 373637a0070SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 374637a0070SStefano Zampini PetscInt i,j,m = A->rmap->n,N = a->lda; 375637a0070SStefano Zampini const PetscScalar *v; 376637a0070SStefano Zampini PetscErrorCode ierr; 377637a0070SStefano Zampini 378637a0070SStefano Zampini PetscFunctionBegin; 379637a0070SStefano Zampini *fl = PETSC_FALSE; 380637a0070SStefano Zampini if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 381637a0070SStefano Zampini ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr); 382637a0070SStefano Zampini for (i=0; i<m; i++) { 383637a0070SStefano Zampini for (j=i; j<m; j++) { 384637a0070SStefano Zampini if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) { 385637a0070SStefano Zampini goto restore; 386637a0070SStefano Zampini } 387637a0070SStefano Zampini } 388637a0070SStefano Zampini } 389637a0070SStefano Zampini *fl = PETSC_TRUE; 390637a0070SStefano Zampini restore: 391637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr); 3921cbb95d3SBarry Smith PetscFunctionReturn(0); 3931cbb95d3SBarry Smith } 3941cbb95d3SBarry Smith 395ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 396b24902e0SBarry Smith { 397ca15aa20SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 398b24902e0SBarry Smith PetscErrorCode ierr; 39923fc5dcaSStefano Zampini PetscInt lda = (PetscInt)mat->lda,j,m,nlda = lda; 400b24902e0SBarry Smith 401b24902e0SBarry Smith PetscFunctionBegin; 402aa5ea44dSBarry Smith ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr); 403aa5ea44dSBarry Smith ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr); 40423fc5dcaSStefano Zampini if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */ 40523fc5dcaSStefano Zampini ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr); 40623fc5dcaSStefano Zampini } 4070298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr); 408b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 409ca15aa20SStefano Zampini const PetscScalar *av; 410ca15aa20SStefano Zampini PetscScalar *v; 411ca15aa20SStefano Zampini 412ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr); 413ca15aa20SStefano Zampini ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr); 41423fc5dcaSStefano Zampini ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr); 415d0f46423SBarry Smith m = A->rmap->n; 41623fc5dcaSStefano Zampini if (lda>m || nlda>m) { 417d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 41823fc5dcaSStefano Zampini ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr); 419b24902e0SBarry Smith } 420b24902e0SBarry Smith } else { 421ca15aa20SStefano Zampini ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr); 422b24902e0SBarry Smith } 423ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr); 424ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr); 425b24902e0SBarry Smith } 426b24902e0SBarry Smith PetscFunctionReturn(0); 427b24902e0SBarry Smith } 428b24902e0SBarry Smith 429ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 43002cad45dSBarry Smith { 4316849ba73SBarry Smith PetscErrorCode ierr; 43202cad45dSBarry Smith 4333a40ed3dSBarry Smith PetscFunctionBegin; 434ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr); 435d0f46423SBarry Smith ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 4365c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 437719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr); 438b24902e0SBarry Smith PetscFunctionReturn(0); 439b24902e0SBarry Smith } 440b24902e0SBarry Smith 4414396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 442289bc588SBarry Smith { 443c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4444396437dSToby Isaac PetscBLASInt info; 4456849ba73SBarry Smith PetscErrorCode ierr; 44667e560aaSBarry Smith 4473a40ed3dSBarry Smith PetscFunctionBegin; 44800121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 4494396437dSToby Isaac PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 45000121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 45185e2c93fSHong Zhang if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve"); 4524905a7bcSToby Isaac ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr); 4534396437dSToby Isaac PetscFunctionReturn(0); 4544396437dSToby Isaac } 4554396437dSToby Isaac 4564396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat); 4574396437dSToby Isaac 4584396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 4594396437dSToby Isaac { 4604396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4614396437dSToby Isaac PetscBLASInt info; 4624396437dSToby Isaac PetscErrorCode ierr; 4634396437dSToby Isaac 4644396437dSToby Isaac PetscFunctionBegin; 465a49dc2a2SStefano Zampini if (A->spd) { 4664396437dSToby Isaac if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 46700121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 4688b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info)); 46900121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 47085e2c93fSHong Zhang if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve"); 4714396437dSToby Isaac if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 472a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 473a49dc2a2SStefano Zampini } else if (A->hermitian) { 4744396437dSToby Isaac if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 47500121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 476a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 47700121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 478a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve"); 4794396437dSToby Isaac if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 480a49dc2a2SStefano Zampini #endif 481a49dc2a2SStefano Zampini } else { /* symmetric case */ 48200121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 483a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 48400121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 485a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve"); 486a49dc2a2SStefano Zampini } 4874905a7bcSToby Isaac ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr); 4884396437dSToby Isaac PetscFunctionReturn(0); 4894396437dSToby Isaac } 49085e2c93fSHong Zhang 4914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 4924396437dSToby Isaac { 4934396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 4944396437dSToby Isaac PetscBLASInt info; 4954396437dSToby Isaac char trans; 4964396437dSToby Isaac PetscErrorCode ierr; 4974396437dSToby Isaac 4984396437dSToby Isaac PetscFunctionBegin; 4994905a7bcSToby Isaac if (PetscDefined(USE_COMPLEX)) { 5004905a7bcSToby Isaac trans = 'C'; 5014905a7bcSToby Isaac } else { 5024905a7bcSToby Isaac trans = 'T'; 5034905a7bcSToby Isaac } 5044905a7bcSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 5054905a7bcSToby Isaac PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info)); 5064905a7bcSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 5074905a7bcSToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform"); 5084905a7bcSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 5094905a7bcSToby Isaac PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&xlda,&info)); 5104905a7bcSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 5114905a7bcSToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve"); 5124905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 5134905a7bcSToby Isaac for (PetscInt i = mat->rank; i < k; i++) { 5144905a7bcSToby Isaac x[j*xlda + i] = 0.; 5154905a7bcSToby Isaac } 5164905a7bcSToby Isaac } 5174905a7bcSToby Isaac ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr); 5184905a7bcSToby Isaac PetscFunctionReturn(0); 5194905a7bcSToby Isaac } 5204905a7bcSToby Isaac 5214396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 5224905a7bcSToby Isaac { 5234396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 5244396437dSToby Isaac PetscBLASInt info; 5254905a7bcSToby Isaac PetscErrorCode ierr; 5264396437dSToby Isaac 5274396437dSToby Isaac PetscFunctionBegin; 5284396437dSToby Isaac if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) { 5294396437dSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 5304396437dSToby Isaac PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&xlda,&info)); 5314396437dSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 5324396437dSToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve"); 5334396437dSToby Isaac if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 5344396437dSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 5354396437dSToby Isaac PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info)); 5364396437dSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 5374396437dSToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform"); 5384396437dSToby Isaac if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);} 5394396437dSToby Isaac } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve"); 5404396437dSToby Isaac ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr); 5414396437dSToby Isaac PetscFunctionReturn(0); 5424396437dSToby Isaac } 5434396437dSToby Isaac 5444396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 5454396437dSToby Isaac { 5464396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 5474905a7bcSToby Isaac PetscScalar *y; 5484905a7bcSToby Isaac PetscBLASInt m=0, k=0; 5494396437dSToby Isaac PetscErrorCode ierr; 5504905a7bcSToby Isaac 5514905a7bcSToby Isaac PetscFunctionBegin; 5524905a7bcSToby Isaac ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 5534905a7bcSToby Isaac ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 5544905a7bcSToby Isaac if (k < m) { 5554396437dSToby Isaac ierr = VecCopy(xx, mat->qrrhs);CHKERRQ(ierr); 5564396437dSToby Isaac ierr = VecGetArray(mat->qrrhs,&y);CHKERRQ(ierr); 5574905a7bcSToby Isaac } else { 5584396437dSToby Isaac ierr = VecCopy(xx, yy);CHKERRQ(ierr); 5594905a7bcSToby Isaac ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 5604905a7bcSToby Isaac } 5614396437dSToby Isaac *_y = y; 5624396437dSToby Isaac *_k = k; 5634396437dSToby Isaac *_m = m; 5644396437dSToby Isaac PetscFunctionReturn(0); 5654396437dSToby Isaac } 5664396437dSToby Isaac 5674396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 5684396437dSToby Isaac { 5694396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 57042e9364cSSatish Balay PetscScalar *y = NULL; 5714396437dSToby Isaac PetscBLASInt m, k; 5724396437dSToby Isaac PetscErrorCode ierr; 5734396437dSToby Isaac 5744396437dSToby Isaac PetscFunctionBegin; 5754396437dSToby Isaac y = *_y; 5764396437dSToby Isaac *_y = NULL; 5774396437dSToby Isaac k = *_k; 5784396437dSToby Isaac m = *_m; 5794905a7bcSToby Isaac if (k < m) { 5804905a7bcSToby Isaac PetscScalar *yv; 5814905a7bcSToby Isaac ierr = VecGetArray(yy,&yv);CHKERRQ(ierr); 5824905a7bcSToby Isaac ierr = PetscArraycpy(yv, y, k);CHKERRQ(ierr); 5834905a7bcSToby Isaac ierr = VecRestoreArray(yy,&yv);CHKERRQ(ierr); 5844396437dSToby Isaac ierr = VecRestoreArray(mat->qrrhs, &y);CHKERRQ(ierr); 5854905a7bcSToby Isaac } else { 5864905a7bcSToby Isaac ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 5874905a7bcSToby Isaac } 5884905a7bcSToby Isaac PetscFunctionReturn(0); 5894905a7bcSToby Isaac } 5904905a7bcSToby Isaac 5914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy) 5924396437dSToby Isaac { 59342e9364cSSatish Balay PetscScalar *y = NULL; 59442e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 5954396437dSToby Isaac PetscErrorCode ierr; 5964396437dSToby Isaac 5974396437dSToby Isaac PetscFunctionBegin; 5984396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 5994396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr); 6004396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6014396437dSToby Isaac PetscFunctionReturn(0); 6024396437dSToby Isaac } 6034396437dSToby Isaac 6044396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy) 6054396437dSToby Isaac { 60642e9364cSSatish Balay PetscScalar *y = NULL; 60742e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6084396437dSToby Isaac PetscErrorCode ierr; 6094396437dSToby Isaac 6104396437dSToby Isaac PetscFunctionBegin; 6114396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6124396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr); 6134396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6144396437dSToby Isaac PetscFunctionReturn(0); 6154396437dSToby Isaac } 6164396437dSToby Isaac 6174396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 6184396437dSToby Isaac { 619e54beecaSStefano Zampini PetscScalar *y = NULL; 620e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6214396437dSToby Isaac PetscErrorCode ierr; 6224396437dSToby Isaac 6234396437dSToby Isaac PetscFunctionBegin; 6244396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6254396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr); 6264396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6274396437dSToby Isaac PetscFunctionReturn(0); 6284396437dSToby Isaac } 6294396437dSToby Isaac 6304396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 6314396437dSToby Isaac { 632e54beecaSStefano Zampini PetscScalar *y = NULL; 633e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6344396437dSToby Isaac PetscErrorCode ierr; 6354396437dSToby Isaac 6364396437dSToby Isaac PetscFunctionBegin; 6374396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6384396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr); 6394396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6404396437dSToby Isaac PetscFunctionReturn(0); 6414396437dSToby Isaac } 6424396437dSToby Isaac 6434396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy) 6444396437dSToby Isaac { 645e54beecaSStefano Zampini PetscScalar *y = NULL; 646e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6474396437dSToby Isaac PetscErrorCode ierr; 6484396437dSToby Isaac 6494396437dSToby Isaac PetscFunctionBegin; 6504396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6514396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr); 6524396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6534396437dSToby Isaac PetscFunctionReturn(0); 6544396437dSToby Isaac } 6554396437dSToby Isaac 6564396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy) 6574396437dSToby Isaac { 65842e9364cSSatish Balay PetscScalar *y = NULL; 65942e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6604396437dSToby Isaac PetscErrorCode ierr; 6614396437dSToby Isaac 6624396437dSToby Isaac PetscFunctionBegin; 6634396437dSToby Isaac ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6644396437dSToby Isaac ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr); 6654396437dSToby Isaac ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr); 6664396437dSToby Isaac PetscFunctionReturn(0); 6674396437dSToby Isaac } 6684396437dSToby Isaac 6694396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 6704905a7bcSToby Isaac { 6714905a7bcSToby Isaac PetscErrorCode ierr; 6724905a7bcSToby Isaac const PetscScalar *b; 6734396437dSToby Isaac PetscScalar *y; 6744905a7bcSToby Isaac PetscInt n, _blda, _xlda; 6754396437dSToby Isaac PetscBLASInt nrhs=0,m=0,k=0,blda=0,xlda=0,ylda=0; 6764905a7bcSToby Isaac 6774905a7bcSToby Isaac PetscFunctionBegin; 67837b8ee88SJose E. Roman *_ylda=0; *_m=0; *_nrhs=0; *_k=0; 6794905a7bcSToby Isaac ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 6804905a7bcSToby Isaac ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 6814905a7bcSToby Isaac ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr); 6824905a7bcSToby Isaac ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr); 6834905a7bcSToby Isaac ierr = MatDenseGetLDA(B,&_blda);CHKERRQ(ierr); 6844905a7bcSToby Isaac ierr = PetscBLASIntCast(_blda, &blda);CHKERRQ(ierr); 6854905a7bcSToby Isaac ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr); 6864905a7bcSToby Isaac ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr); 6874905a7bcSToby Isaac if (xlda < m) { 6884396437dSToby Isaac ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr); 6894396437dSToby Isaac ierr = PetscMalloc1(nrhs * m, &y);CHKERRQ(ierr); 6904905a7bcSToby Isaac if (blda == m) { 6914396437dSToby Isaac ierr = PetscArraycpy(y,b,blda*nrhs);CHKERRQ(ierr); 6924905a7bcSToby Isaac } else { 6934905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 6944396437dSToby Isaac ierr = PetscArraycpy(&y[j*m],&b[j*blda],m);CHKERRQ(ierr); 6954905a7bcSToby Isaac } 6964905a7bcSToby Isaac } 6974396437dSToby Isaac ylda = m; 6984396437dSToby Isaac ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr); 6994905a7bcSToby Isaac } else { 7004905a7bcSToby Isaac if (blda == xlda) { 7014396437dSToby Isaac ierr = MatCopy(B, X, SAME_NONZERO_PATTERN);CHKERRQ(ierr); 7024396437dSToby Isaac ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr); 7034905a7bcSToby Isaac } else { 7044396437dSToby Isaac ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr); 7054396437dSToby Isaac ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr); 7064905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 7074396437dSToby Isaac ierr = PetscArraycpy(&y[j*xlda],&b[j*blda],m);CHKERRQ(ierr); 7084905a7bcSToby Isaac } 7094396437dSToby Isaac ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr); 7104905a7bcSToby Isaac } 7114396437dSToby Isaac ylda = xlda; 7124905a7bcSToby Isaac } 7134396437dSToby Isaac *_y = y; 7144396437dSToby Isaac *_ylda = ylda; 7154396437dSToby Isaac *_k = k; 7164396437dSToby Isaac *_m = m; 7174396437dSToby Isaac *_nrhs = nrhs; 7184396437dSToby Isaac PetscFunctionReturn(0); 7194396437dSToby Isaac } 7204396437dSToby Isaac 7214396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 7224396437dSToby Isaac { 7234396437dSToby Isaac PetscScalar *y; 7244396437dSToby Isaac PetscInt _xlda; 7254396437dSToby Isaac PetscBLASInt k,ylda,nrhs,xlda=0; 7264396437dSToby Isaac PetscErrorCode ierr; 7274396437dSToby Isaac 7284396437dSToby Isaac PetscFunctionBegin; 7294396437dSToby Isaac y = *_y; 7304396437dSToby Isaac *_y = NULL; 7314396437dSToby Isaac k = *_k; 7324396437dSToby Isaac ylda = *_ylda; 7334396437dSToby Isaac nrhs = *_nrhs; 7344396437dSToby Isaac ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr); 7354396437dSToby Isaac ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr); 7364396437dSToby Isaac if (xlda != ylda) { 7374905a7bcSToby Isaac PetscScalar *xv; 7384905a7bcSToby Isaac ierr = MatDenseGetArray(X,&xv);CHKERRQ(ierr); 7394905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 7404396437dSToby Isaac ierr = PetscArraycpy(&xv[j*xlda],&y[j*ylda],k);CHKERRQ(ierr); 7414905a7bcSToby Isaac } 7424905a7bcSToby Isaac ierr = MatDenseRestoreArray(X,&xv);CHKERRQ(ierr); 7434396437dSToby Isaac ierr = PetscFree(y);CHKERRQ(ierr); 7444905a7bcSToby Isaac } else { 7454396437dSToby Isaac ierr = MatDenseRestoreArray(X,&y);CHKERRQ(ierr); 7464905a7bcSToby Isaac } 74785e2c93fSHong Zhang PetscFunctionReturn(0); 74885e2c93fSHong Zhang } 74985e2c93fSHong Zhang 7504396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X) 7514396437dSToby Isaac { 7524396437dSToby Isaac PetscScalar *y; 7534396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 7544396437dSToby Isaac PetscErrorCode ierr; 7554396437dSToby Isaac 7564396437dSToby Isaac PetscFunctionBegin; 7574396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7584396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr); 7594396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7604396437dSToby Isaac PetscFunctionReturn(0); 7614396437dSToby Isaac } 7624396437dSToby Isaac 7634396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X) 7644396437dSToby Isaac { 7654396437dSToby Isaac PetscScalar *y; 7664396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 7674396437dSToby Isaac PetscErrorCode ierr; 7684396437dSToby Isaac 7694396437dSToby Isaac PetscFunctionBegin; 7704396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7714396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr); 7724396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7734396437dSToby Isaac PetscFunctionReturn(0); 7744396437dSToby Isaac } 7754396437dSToby Isaac 7764396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X) 7774396437dSToby Isaac { 7784396437dSToby Isaac PetscScalar *y; 7794396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 7804396437dSToby Isaac PetscErrorCode ierr; 7814396437dSToby Isaac 7824396437dSToby Isaac PetscFunctionBegin; 7834396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7844396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr); 7854396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7864396437dSToby Isaac PetscFunctionReturn(0); 7874396437dSToby Isaac } 7884396437dSToby Isaac 7894396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X) 7904396437dSToby Isaac { 7914396437dSToby Isaac PetscScalar *y; 7924396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 7934396437dSToby Isaac PetscErrorCode ierr; 7944396437dSToby Isaac 7954396437dSToby Isaac PetscFunctionBegin; 7964396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7974396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr); 7984396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 7994396437dSToby Isaac PetscFunctionReturn(0); 8004396437dSToby Isaac } 8014396437dSToby Isaac 8024396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X) 8034396437dSToby Isaac { 8044396437dSToby Isaac PetscScalar *y; 8054396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 8064396437dSToby Isaac PetscErrorCode ierr; 8074396437dSToby Isaac 8084396437dSToby Isaac PetscFunctionBegin; 8094396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 8104396437dSToby Isaac ierr = MatSolve_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr); 8114396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 8124396437dSToby Isaac PetscFunctionReturn(0); 8134396437dSToby Isaac } 8144396437dSToby Isaac 8154396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X) 8164396437dSToby Isaac { 8174396437dSToby Isaac PetscScalar *y; 8184396437dSToby Isaac PetscBLASInt m, k, ylda, nrhs; 8194396437dSToby Isaac PetscErrorCode ierr; 8204396437dSToby Isaac 8214396437dSToby Isaac PetscFunctionBegin; 8224396437dSToby Isaac ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 8234396437dSToby Isaac ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr); 8244396437dSToby Isaac ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr); 8254396437dSToby Isaac PetscFunctionReturn(0); 8264396437dSToby Isaac } 8274396437dSToby Isaac 82800121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat); 82900121966SStefano Zampini 830db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 831db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 832db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 833ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 834db4efbfdSBarry Smith { 835db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 836db4efbfdSBarry Smith PetscErrorCode ierr; 837db4efbfdSBarry Smith PetscBLASInt n,m,info; 838db4efbfdSBarry Smith 839db4efbfdSBarry Smith PetscFunctionBegin; 840c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 841c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 842db4efbfdSBarry Smith if (!mat->pivots) { 8438208b9aeSStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 8443bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 845db4efbfdSBarry Smith } 846db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 8478e57ea43SSatish Balay ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 8488b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info)); 8498e57ea43SSatish Balay ierr = PetscFPTrapPop();CHKERRQ(ierr); 8508e57ea43SSatish Balay 851e32f2f54SBarry Smith if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization"); 852e32f2f54SBarry Smith if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 8538208b9aeSStefano Zampini 8544396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_LU; 8554396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_LU; 8564396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_LU; 8574396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU; 858d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 859db4efbfdSBarry Smith 860f6224b95SHong Zhang ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 861f6224b95SHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr); 862f6224b95SHong Zhang 863dc0b31edSSatish Balay ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 864db4efbfdSBarry Smith PetscFunctionReturn(0); 865db4efbfdSBarry Smith } 866db4efbfdSBarry Smith 8674396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 8684396437dSToby Isaac { 8694396437dSToby Isaac MatFactorInfo info; 8704396437dSToby Isaac PetscErrorCode ierr; 8714396437dSToby Isaac 8724396437dSToby Isaac PetscFunctionBegin; 8734396437dSToby Isaac ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 8744396437dSToby Isaac ierr = (*fact->ops->lufactor)(fact,NULL,NULL,&info);CHKERRQ(ierr); 8754396437dSToby Isaac PetscFunctionReturn(0); 8764396437dSToby Isaac } 8774396437dSToby Isaac 8784396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 8794396437dSToby Isaac { 8804396437dSToby Isaac PetscFunctionBegin; 8814396437dSToby Isaac fact->preallocated = PETSC_TRUE; 8824396437dSToby Isaac fact->assembled = PETSC_TRUE; 8834396437dSToby Isaac fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 8844396437dSToby Isaac fact->ops->solve = MatSolve_SeqDense_LU; 8854396437dSToby Isaac fact->ops->matsolve = MatMatSolve_SeqDense_LU; 8864396437dSToby Isaac fact->ops->solvetranspose = MatSolveTranspose_SeqDense_LU; 8874396437dSToby Isaac PetscFunctionReturn(0); 8884396437dSToby Isaac } 8894396437dSToby Isaac 890a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */ 891ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 892db4efbfdSBarry Smith { 893db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 894db4efbfdSBarry Smith PetscErrorCode ierr; 895c5df96a5SBarry Smith PetscBLASInt info,n; 896db4efbfdSBarry Smith 897db4efbfdSBarry Smith PetscFunctionBegin; 898c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 899db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 900a49dc2a2SStefano Zampini if (A->spd) { 90100121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 9028b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info)); 90300121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 904a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 905a49dc2a2SStefano Zampini } else if (A->hermitian) { 906a49dc2a2SStefano Zampini if (!mat->pivots) { 907a49dc2a2SStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 908a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 909a49dc2a2SStefano Zampini } 910a49dc2a2SStefano Zampini if (!mat->fwork) { 911a49dc2a2SStefano Zampini PetscScalar dummy; 912a49dc2a2SStefano Zampini 913a49dc2a2SStefano Zampini mat->lfwork = -1; 91400121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 915a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 91600121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 917a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 918a49dc2a2SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 919a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 920a49dc2a2SStefano Zampini } 92100121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 922a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 92300121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 924a49dc2a2SStefano Zampini #endif 925a49dc2a2SStefano Zampini } else { /* symmetric case */ 926a49dc2a2SStefano Zampini if (!mat->pivots) { 927a49dc2a2SStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 928a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 929a49dc2a2SStefano Zampini } 930a49dc2a2SStefano Zampini if (!mat->fwork) { 931a49dc2a2SStefano Zampini PetscScalar dummy; 932a49dc2a2SStefano Zampini 933a49dc2a2SStefano Zampini mat->lfwork = -1; 93400121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 935a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 93600121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 937a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 938a49dc2a2SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 939a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 940a49dc2a2SStefano Zampini } 94100121966SStefano Zampini ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 942a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 94300121966SStefano Zampini ierr = PetscFPTrapPop();CHKERRQ(ierr); 944a49dc2a2SStefano Zampini } 945e32f2f54SBarry Smith if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 9468208b9aeSStefano Zampini 9474396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_Cholesky; 9484396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_Cholesky; 9494396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_Cholesky; 9504396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky; 951d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 9522205254eSKarl Rupp 953f6224b95SHong Zhang ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 954f6224b95SHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr); 955f6224b95SHong Zhang 956eb3f19e4SBarry Smith ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 957db4efbfdSBarry Smith PetscFunctionReturn(0); 958db4efbfdSBarry Smith } 959db4efbfdSBarry Smith 9604396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 961db4efbfdSBarry Smith { 962db4efbfdSBarry Smith PetscErrorCode ierr; 963db4efbfdSBarry Smith MatFactorInfo info; 964db4efbfdSBarry Smith 965db4efbfdSBarry Smith PetscFunctionBegin; 966db4efbfdSBarry Smith info.fill = 1.0; 9672205254eSKarl Rupp 968c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 969f4259b30SLisandro Dalcin ierr = (*fact->ops->choleskyfactor)(fact,NULL,&info);CHKERRQ(ierr); 970db4efbfdSBarry Smith PetscFunctionReturn(0); 971db4efbfdSBarry Smith } 972db4efbfdSBarry Smith 973ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 974db4efbfdSBarry Smith { 975db4efbfdSBarry Smith PetscFunctionBegin; 976c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 9771bbcc794SSatish Balay fact->preallocated = PETSC_TRUE; 978719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 9794396437dSToby Isaac fact->ops->solve = MatSolve_SeqDense_Cholesky; 9804396437dSToby Isaac fact->ops->matsolve = MatMatSolve_SeqDense_Cholesky; 9814396437dSToby Isaac fact->ops->solvetranspose = MatSolve_SeqDense_Cholesky; 982db4efbfdSBarry Smith PetscFunctionReturn(0); 983db4efbfdSBarry Smith } 984db4efbfdSBarry Smith 9854905a7bcSToby Isaac static PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo) 9864905a7bcSToby Isaac { 9874905a7bcSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 9884905a7bcSToby Isaac PetscErrorCode ierr; 9894905a7bcSToby Isaac PetscBLASInt n,m,info, min, max; 9904905a7bcSToby Isaac 9914905a7bcSToby Isaac PetscFunctionBegin; 9924905a7bcSToby Isaac ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 9934905a7bcSToby Isaac ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 9944396437dSToby Isaac max = PetscMax(m, n); 9954396437dSToby Isaac min = PetscMin(m, n); 9964905a7bcSToby Isaac if (!mat->tau) { 9974396437dSToby Isaac ierr = PetscMalloc1(min,&mat->tau);CHKERRQ(ierr); 9984396437dSToby Isaac ierr = PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar));CHKERRQ(ierr); 9994396437dSToby Isaac } 10004396437dSToby Isaac if (!mat->pivots) { 10014396437dSToby Isaac ierr = PetscMalloc1(m,&mat->pivots);CHKERRQ(ierr); 10024396437dSToby Isaac ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscScalar));CHKERRQ(ierr); 10034396437dSToby Isaac } 10044396437dSToby Isaac if (!mat->qrrhs) { 10054396437dSToby Isaac ierr = MatCreateVecs(A, NULL, &(mat->qrrhs));CHKERRQ(ierr); 10064905a7bcSToby Isaac } 10074905a7bcSToby Isaac if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 10084905a7bcSToby Isaac if (!mat->fwork) { 10094905a7bcSToby Isaac PetscScalar dummy; 10104905a7bcSToby Isaac 10114905a7bcSToby Isaac mat->lfwork = -1; 10124905a7bcSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 10134905a7bcSToby Isaac PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info)); 10144905a7bcSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 10154905a7bcSToby Isaac mat->lfwork = (PetscInt)PetscRealPart(dummy); 10164905a7bcSToby Isaac ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 10174905a7bcSToby Isaac ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 10184905a7bcSToby Isaac } 10194905a7bcSToby Isaac ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 10204905a7bcSToby Isaac PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info)); 10214905a7bcSToby Isaac ierr = PetscFPTrapPop();CHKERRQ(ierr); 10224905a7bcSToby Isaac if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization"); 10234905a7bcSToby Isaac // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR. For now just say rank is min of m and n 10244905a7bcSToby Isaac mat->rank = min; 10254905a7bcSToby Isaac 10264396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_QR; 10274396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_QR; 10284905a7bcSToby Isaac A->factortype = MAT_FACTOR_QR; 10294905a7bcSToby Isaac if (m == n) { 10304396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_QR; 10314396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR; 10324905a7bcSToby Isaac } 10334905a7bcSToby Isaac 10344905a7bcSToby Isaac ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 10354905a7bcSToby Isaac ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr); 10364905a7bcSToby Isaac 10374905a7bcSToby Isaac ierr = PetscLogFlops(2.0*min*min*(max-min/3.0));CHKERRQ(ierr); 10384905a7bcSToby Isaac PetscFunctionReturn(0); 10394905a7bcSToby Isaac } 10404905a7bcSToby Isaac 10414905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 10424905a7bcSToby Isaac { 10434905a7bcSToby Isaac PetscErrorCode ierr; 10444905a7bcSToby Isaac MatFactorInfo info; 10454905a7bcSToby Isaac 10464905a7bcSToby Isaac PetscFunctionBegin; 10474905a7bcSToby Isaac info.fill = 1.0; 10484905a7bcSToby Isaac 10494905a7bcSToby Isaac ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 10504905a7bcSToby Isaac ierr = MatQRFactor_SeqDense(fact,NULL,&info);CHKERRQ(ierr); 10514905a7bcSToby Isaac PetscFunctionReturn(0); 10524905a7bcSToby Isaac } 10534905a7bcSToby Isaac 10544905a7bcSToby Isaac static PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 10554905a7bcSToby Isaac { 10564905a7bcSToby Isaac PetscErrorCode ierr; 10574905a7bcSToby Isaac 10584905a7bcSToby Isaac PetscFunctionBegin; 10594905a7bcSToby Isaac fact->assembled = PETSC_TRUE; 10604905a7bcSToby Isaac fact->preallocated = PETSC_TRUE; 10614396437dSToby Isaac fact->ops->solve = MatSolve_SeqDense_QR; 10624396437dSToby Isaac fact->ops->matsolve = MatMatSolve_SeqDense_QR; 10634396437dSToby Isaac if (A->cmap->n == A->rmap->n) { 10644396437dSToby Isaac fact->ops->solvetranspose = MatSolveTranspose_SeqDense_QR; 10654396437dSToby Isaac fact->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR; 10664396437dSToby Isaac } 10674905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr); 10684905a7bcSToby Isaac PetscFunctionReturn(0); 10694905a7bcSToby Isaac } 10704905a7bcSToby Isaac 10714905a7bcSToby Isaac 1072ca15aa20SStefano Zampini /* uses LAPACK */ 1073cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 1074db4efbfdSBarry Smith { 1075db4efbfdSBarry Smith PetscErrorCode ierr; 1076db4efbfdSBarry Smith 1077db4efbfdSBarry Smith PetscFunctionBegin; 1078ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr); 1079db4efbfdSBarry Smith ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1080ca15aa20SStefano Zampini ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr); 1081*66e17bc3SBarry Smith (*fact)->trivialsymbolic = PETSC_TRUE; 10822a350339SBarry Smith if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) { 1083db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 10842a350339SBarry Smith (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense; 1085db4efbfdSBarry Smith } else { 1086db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 1087db4efbfdSBarry Smith } 1088d5f3da31SBarry Smith (*fact)->factortype = ftype; 108900c67f3bSHong Zhang 109000c67f3bSHong Zhang ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr); 109100c67f3bSHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr); 10924ac6704cSBarry Smith ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_LU]);CHKERRQ(ierr); 10934ac6704cSBarry Smith ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ILU]);CHKERRQ(ierr); 10944ac6704cSBarry Smith ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY]);CHKERRQ(ierr); 10954ac6704cSBarry Smith ierr = PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ICC]);CHKERRQ(ierr); 1096db4efbfdSBarry Smith PetscFunctionReturn(0); 1097db4efbfdSBarry Smith } 1098db4efbfdSBarry Smith 1099289bc588SBarry Smith /* ------------------------------------------------------------------*/ 1100e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 1101289bc588SBarry Smith { 1102c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1103d9ca1df4SBarry Smith PetscScalar *x,*v = mat->v,zero = 0.0,xt; 1104d9ca1df4SBarry Smith const PetscScalar *b; 1105dfbe8321SBarry Smith PetscErrorCode ierr; 1106d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 110723fff9afSBarry Smith PetscBLASInt o = 1,bm = 0; 1108289bc588SBarry Smith 11093a40ed3dSBarry Smith PetscFunctionBegin; 1110ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1111c70f7ee4SJunchao Zhang if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented"); 1112ca15aa20SStefano Zampini #endif 1113422a814eSBarry Smith if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */ 1114c5df96a5SBarry Smith ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr); 1115289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 11163bffc371SBarry Smith /* this is a hack fix, should have another version without the second BLASdotu */ 11172dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 1118289bc588SBarry Smith } 11191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1120d9ca1df4SBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1121b965ef7fSBarry Smith its = its*lits; 1122e32f2f54SBarry Smith if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1123289bc588SBarry Smith while (its--) { 1124fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 1125289bc588SBarry Smith for (i=0; i<m; i++) { 11263bffc371SBarry Smith PetscStackCallBLAS("BLASdotu",xt = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o)); 112755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 1128289bc588SBarry Smith } 1129289bc588SBarry Smith } 1130fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1131289bc588SBarry Smith for (i=m-1; i>=0; i--) { 11323bffc371SBarry Smith PetscStackCallBLAS("BLASdotu",xt = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o)); 113355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 1134289bc588SBarry Smith } 1135289bc588SBarry Smith } 1136289bc588SBarry Smith } 1137d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 11381ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 11393a40ed3dSBarry Smith PetscFunctionReturn(0); 1140289bc588SBarry Smith } 1141289bc588SBarry Smith 1142289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1143ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 1144289bc588SBarry Smith { 1145c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1146d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1147d9ca1df4SBarry Smith PetscScalar *y; 1148dfbe8321SBarry Smith PetscErrorCode ierr; 11490805154bSBarry Smith PetscBLASInt m, n,_One=1; 1150ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 11513a40ed3dSBarry Smith 11523a40ed3dSBarry Smith PetscFunctionBegin; 1153c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 1154c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 1155d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 11562bf066beSStefano Zampini ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr); 11575ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11585ac36cfcSBarry Smith PetscBLASInt i; 11595ac36cfcSBarry Smith for (i=0; i<n; i++) y[i] = 0.0; 11605ac36cfcSBarry Smith } else { 11618b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One)); 11625ac36cfcSBarry Smith ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 11635ac36cfcSBarry Smith } 1164d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 11652bf066beSStefano Zampini ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr); 11663a40ed3dSBarry Smith PetscFunctionReturn(0); 1167289bc588SBarry Smith } 1168800995b7SMatthew Knepley 1169ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 1170289bc588SBarry Smith { 1171c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1172d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0,_DZero=0.0; 1173dfbe8321SBarry Smith PetscErrorCode ierr; 11740805154bSBarry Smith PetscBLASInt m, n, _One=1; 1175d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 11763a40ed3dSBarry Smith 11773a40ed3dSBarry Smith PetscFunctionBegin; 1178c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 1179c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 1180d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 11812bf066beSStefano Zampini ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr); 11825ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 11835ac36cfcSBarry Smith PetscBLASInt i; 11845ac36cfcSBarry Smith for (i=0; i<m; i++) y[i] = 0.0; 11855ac36cfcSBarry Smith } else { 11868b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One)); 11875ac36cfcSBarry Smith ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr); 11885ac36cfcSBarry Smith } 1189d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 11902bf066beSStefano Zampini ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr); 11913a40ed3dSBarry Smith PetscFunctionReturn(0); 1192289bc588SBarry Smith } 11936ee01492SSatish Balay 1194ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 1195289bc588SBarry Smith { 1196c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1197d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1198d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0; 1199dfbe8321SBarry Smith PetscErrorCode ierr; 12000805154bSBarry Smith PetscBLASInt m, n, _One=1; 12013a40ed3dSBarry Smith 12023a40ed3dSBarry Smith PetscFunctionBegin; 1203c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 1204c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 120517b127eeSStefano Zampini ierr = VecCopy(zz,yy);CHKERRQ(ierr); 1206d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 1207d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 12081ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 12098b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 1210d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 12111ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 1212dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 12133a40ed3dSBarry Smith PetscFunctionReturn(0); 1214289bc588SBarry Smith } 12156ee01492SSatish Balay 1216ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 1217289bc588SBarry Smith { 1218c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1219d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 1220d9ca1df4SBarry Smith PetscScalar *y; 1221dfbe8321SBarry Smith PetscErrorCode ierr; 12220805154bSBarry Smith PetscBLASInt m, n, _One=1; 122387828ca2SBarry Smith PetscScalar _DOne=1.0; 12243a40ed3dSBarry Smith 12253a40ed3dSBarry Smith PetscFunctionBegin; 1226c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 1227c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 122817b127eeSStefano Zampini ierr = VecCopy(zz,yy);CHKERRQ(ierr); 1229d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 1230d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 12311ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 12328b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 1233d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 12341ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 1235dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 1237289bc588SBarry Smith } 1238289bc588SBarry Smith 1239289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1240e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 1241289bc588SBarry Smith { 1242c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 12436849ba73SBarry Smith PetscErrorCode ierr; 124413f74950SBarry Smith PetscInt i; 124567e560aaSBarry Smith 12463a40ed3dSBarry Smith PetscFunctionBegin; 1247d0f46423SBarry Smith *ncols = A->cmap->n; 1248289bc588SBarry Smith if (cols) { 12493741e84bSPierre Jolivet ierr = PetscMalloc1(A->cmap->n,cols);CHKERRQ(ierr); 1250d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 1251289bc588SBarry Smith } 1252289bc588SBarry Smith if (vals) { 1253ca15aa20SStefano Zampini const PetscScalar *v; 1254ca15aa20SStefano Zampini 1255ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr); 12563741e84bSPierre Jolivet ierr = PetscMalloc1(A->cmap->n,vals);CHKERRQ(ierr); 1257ca15aa20SStefano Zampini v += row; 1258d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 1259ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr); 1260289bc588SBarry Smith } 12613a40ed3dSBarry Smith PetscFunctionReturn(0); 1262289bc588SBarry Smith } 12636ee01492SSatish Balay 1264e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 1265289bc588SBarry Smith { 1266dfbe8321SBarry Smith PetscErrorCode ierr; 12676e111a19SKarl Rupp 1268606d414cSSatish Balay PetscFunctionBegin; 1269cb4a9cd9SHong Zhang if (ncols) *ncols = 0; 1270606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 1271606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 12723a40ed3dSBarry Smith PetscFunctionReturn(0); 1273289bc588SBarry Smith } 1274289bc588SBarry Smith /* ----------------------------------------------------------------*/ 1275e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 1276289bc588SBarry Smith { 1277c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1278ca15aa20SStefano Zampini PetscScalar *av; 127913f74950SBarry Smith PetscInt i,j,idx=0; 1280ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1281c70f7ee4SJunchao Zhang PetscOffloadMask oldf; 1282ca15aa20SStefano Zampini #endif 1283ca15aa20SStefano Zampini PetscErrorCode ierr; 1284d6dfbf8fSBarry Smith 12853a40ed3dSBarry Smith PetscFunctionBegin; 1286ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr); 1287289bc588SBarry Smith if (!mat->roworiented) { 1288dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1289289bc588SBarry Smith for (j=0; j<n; j++) { 1290cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 1291cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 1292289bc588SBarry Smith for (i=0; i<m; i++) { 1293cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 1294cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 1295ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 1296289bc588SBarry Smith } 1297289bc588SBarry Smith } 12983a40ed3dSBarry Smith } else { 1299289bc588SBarry Smith for (j=0; j<n; j++) { 1300cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 1301cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 1302289bc588SBarry Smith for (i=0; i<m; i++) { 1303cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 1304cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 1305ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 1306289bc588SBarry Smith } 1307289bc588SBarry Smith } 1308289bc588SBarry Smith } 13093a40ed3dSBarry Smith } else { 1310dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1311e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 1312cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 1313cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 1314e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 1315cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 1316cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 1317ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 1318e8d4e0b9SBarry Smith } 1319e8d4e0b9SBarry Smith } 13203a40ed3dSBarry Smith } else { 1321289bc588SBarry Smith for (i=0; i<m; i++) { 1322cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 1323cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 1324289bc588SBarry Smith for (j=0; j<n; j++) { 1325cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 1326cf9c20a2SJed Brown if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 1327ca15aa20SStefano Zampini av[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 1328289bc588SBarry Smith } 1329289bc588SBarry Smith } 1330289bc588SBarry Smith } 1331e8d4e0b9SBarry Smith } 1332ca15aa20SStefano Zampini /* hack to prevent unneeded copy to the GPU while returning the array */ 1333ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1334c70f7ee4SJunchao Zhang oldf = A->offloadmask; 1335c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_GPU; 1336ca15aa20SStefano Zampini #endif 1337ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr); 1338ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1339c70f7ee4SJunchao Zhang A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU); 1340ca15aa20SStefano Zampini #endif 13413a40ed3dSBarry Smith PetscFunctionReturn(0); 1342289bc588SBarry Smith } 1343e8d4e0b9SBarry Smith 1344e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 1345ae80bb75SLois Curfman McInnes { 1346ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1347ca15aa20SStefano Zampini const PetscScalar *vv; 134813f74950SBarry Smith PetscInt i,j; 1349ca15aa20SStefano Zampini PetscErrorCode ierr; 1350ae80bb75SLois Curfman McInnes 13513a40ed3dSBarry Smith PetscFunctionBegin; 1352ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr); 1353ae80bb75SLois Curfman McInnes /* row-oriented output */ 1354ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 135597e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 1356e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n); 1357ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 13586f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 1359e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n); 1360ca15aa20SStefano Zampini *v++ = vv[indexn[j]*mat->lda + indexm[i]]; 1361ae80bb75SLois Curfman McInnes } 1362ae80bb75SLois Curfman McInnes } 1363ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr); 13643a40ed3dSBarry Smith PetscFunctionReturn(0); 1365ae80bb75SLois Curfman McInnes } 1366ae80bb75SLois Curfman McInnes 1367289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1368289bc588SBarry Smith 13698491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer) 1370aabbc4fbSShri Abhyankar { 1371aabbc4fbSShri Abhyankar PetscErrorCode ierr; 13728491ab44SLisandro Dalcin PetscBool skipHeader; 13738491ab44SLisandro Dalcin PetscViewerFormat format; 13748491ab44SLisandro Dalcin PetscInt header[4],M,N,m,lda,i,j,k; 13758491ab44SLisandro Dalcin const PetscScalar *v; 13768491ab44SLisandro Dalcin PetscScalar *vwork; 1377aabbc4fbSShri Abhyankar 1378aabbc4fbSShri Abhyankar PetscFunctionBegin; 13798491ab44SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 13808491ab44SLisandro Dalcin ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr); 13818491ab44SLisandro Dalcin ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 13828491ab44SLisandro Dalcin if (skipHeader) format = PETSC_VIEWER_NATIVE; 1383aabbc4fbSShri Abhyankar 13848491ab44SLisandro Dalcin ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 13858491ab44SLisandro Dalcin 13868491ab44SLisandro Dalcin /* write matrix header */ 13878491ab44SLisandro Dalcin header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N; 13888491ab44SLisandro Dalcin header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N; 13898491ab44SLisandro Dalcin if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);} 13908491ab44SLisandro Dalcin 13918491ab44SLisandro Dalcin ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr); 13928491ab44SLisandro Dalcin if (format != PETSC_VIEWER_NATIVE) { 13938491ab44SLisandro Dalcin PetscInt nnz = m*N, *iwork; 13948491ab44SLisandro Dalcin /* store row lengths for each row */ 13958491ab44SLisandro Dalcin ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr); 13968491ab44SLisandro Dalcin for (i=0; i<m; i++) iwork[i] = N; 13978491ab44SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 13988491ab44SLisandro Dalcin /* store column indices (zero start index) */ 13998491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 14008491ab44SLisandro Dalcin for (j=0; j<N; j++, k++) 14018491ab44SLisandro Dalcin iwork[k] = j; 14028491ab44SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 14038491ab44SLisandro Dalcin ierr = PetscFree(iwork);CHKERRQ(ierr); 14048491ab44SLisandro Dalcin } 14058491ab44SLisandro Dalcin /* store matrix values as a dense matrix in row major order */ 14068491ab44SLisandro Dalcin ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr); 14078491ab44SLisandro Dalcin ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr); 14088491ab44SLisandro Dalcin ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr); 14098491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 14108491ab44SLisandro Dalcin for (j=0; j<N; j++, k++) 14118491ab44SLisandro Dalcin vwork[k] = v[i+lda*j]; 14128491ab44SLisandro Dalcin ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr); 14138491ab44SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 14148491ab44SLisandro Dalcin ierr = PetscFree(vwork);CHKERRQ(ierr); 14158491ab44SLisandro Dalcin PetscFunctionReturn(0); 14168491ab44SLisandro Dalcin } 14178491ab44SLisandro Dalcin 14188491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer) 14198491ab44SLisandro Dalcin { 14208491ab44SLisandro Dalcin PetscErrorCode ierr; 14218491ab44SLisandro Dalcin PetscBool skipHeader; 14228491ab44SLisandro Dalcin PetscInt header[4],M,N,m,nz,lda,i,j,k; 14238491ab44SLisandro Dalcin PetscInt rows,cols; 14248491ab44SLisandro Dalcin PetscScalar *v,*vwork; 14258491ab44SLisandro Dalcin 14268491ab44SLisandro Dalcin PetscFunctionBegin; 14278491ab44SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 14288491ab44SLisandro Dalcin ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr); 14298491ab44SLisandro Dalcin 14308491ab44SLisandro Dalcin if (!skipHeader) { 14318491ab44SLisandro Dalcin ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr); 14328491ab44SLisandro Dalcin if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 14338491ab44SLisandro Dalcin M = header[1]; N = header[2]; 14348491ab44SLisandro Dalcin if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M); 14358491ab44SLisandro Dalcin if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N); 14368491ab44SLisandro Dalcin nz = header[3]; 14378491ab44SLisandro Dalcin if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz); 1438aabbc4fbSShri Abhyankar } else { 14398491ab44SLisandro Dalcin ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 14408491ab44SLisandro Dalcin if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix"); 14418491ab44SLisandro Dalcin nz = MATRIX_BINARY_FORMAT_DENSE; 1442e6324fbbSBarry Smith } 1443aabbc4fbSShri Abhyankar 14448491ab44SLisandro Dalcin /* setup global sizes if not set */ 14458491ab44SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 14468491ab44SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 14478491ab44SLisandro Dalcin ierr = MatSetUp(mat);CHKERRQ(ierr); 14488491ab44SLisandro Dalcin /* check if global sizes are correct */ 14498491ab44SLisandro Dalcin ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr); 14508491ab44SLisandro Dalcin if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 1451aabbc4fbSShri Abhyankar 14528491ab44SLisandro Dalcin ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr); 14538491ab44SLisandro Dalcin ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr); 14548491ab44SLisandro Dalcin ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr); 14558491ab44SLisandro Dalcin ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr); 14568491ab44SLisandro Dalcin if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense format */ 14578491ab44SLisandro Dalcin PetscInt nnz = m*N; 14588491ab44SLisandro Dalcin /* read in matrix values */ 14598491ab44SLisandro Dalcin ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr); 14608491ab44SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 14618491ab44SLisandro Dalcin /* store values in column major order */ 14628491ab44SLisandro Dalcin for (j=0; j<N; j++) 14638491ab44SLisandro Dalcin for (i=0; i<m; i++) 14648491ab44SLisandro Dalcin v[i+lda*j] = vwork[i*N+j]; 14658491ab44SLisandro Dalcin ierr = PetscFree(vwork);CHKERRQ(ierr); 14668491ab44SLisandro Dalcin } else { /* matrix in file is sparse format */ 14678491ab44SLisandro Dalcin PetscInt nnz = 0, *rlens, *icols; 14688491ab44SLisandro Dalcin /* read in row lengths */ 14698491ab44SLisandro Dalcin ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr); 14708491ab44SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 14718491ab44SLisandro Dalcin for (i=0; i<m; i++) nnz += rlens[i]; 14728491ab44SLisandro Dalcin /* read in column indices and values */ 14738491ab44SLisandro Dalcin ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr); 14748491ab44SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 14758491ab44SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 14768491ab44SLisandro Dalcin /* store values in column major order */ 14778491ab44SLisandro Dalcin for (k=0, i=0; i<m; i++) 14788491ab44SLisandro Dalcin for (j=0; j<rlens[i]; j++, k++) 14798491ab44SLisandro Dalcin v[i+lda*icols[k]] = vwork[k]; 14808491ab44SLisandro Dalcin ierr = PetscFree(rlens);CHKERRQ(ierr); 14818491ab44SLisandro Dalcin ierr = PetscFree2(icols,vwork);CHKERRQ(ierr); 1482aabbc4fbSShri Abhyankar } 14838491ab44SLisandro Dalcin ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr); 14848491ab44SLisandro Dalcin ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14858491ab44SLisandro Dalcin ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1486aabbc4fbSShri Abhyankar PetscFunctionReturn(0); 1487aabbc4fbSShri Abhyankar } 1488aabbc4fbSShri Abhyankar 1489eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer) 1490eb91f321SVaclav Hapla { 1491eb91f321SVaclav Hapla PetscBool isbinary, ishdf5; 1492eb91f321SVaclav Hapla PetscErrorCode ierr; 1493eb91f321SVaclav Hapla 1494eb91f321SVaclav Hapla PetscFunctionBegin; 1495eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 1496eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 1497eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 1498eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1499eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1500eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 1501eb91f321SVaclav Hapla if (isbinary) { 15028491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 1503eb91f321SVaclav Hapla } else if (ishdf5) { 1504eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 1505eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 1506eb91f321SVaclav Hapla #else 1507eb91f321SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1508eb91f321SVaclav Hapla #endif 1509eb91f321SVaclav Hapla } else { 1510eb91f321SVaclav Hapla SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 1511eb91f321SVaclav Hapla } 1512eb91f321SVaclav Hapla PetscFunctionReturn(0); 1513eb91f321SVaclav Hapla } 1514eb91f321SVaclav Hapla 15156849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 1516289bc588SBarry Smith { 1517932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1518dfbe8321SBarry Smith PetscErrorCode ierr; 151913f74950SBarry Smith PetscInt i,j; 15202dcb1b2aSMatthew Knepley const char *name; 1521ca15aa20SStefano Zampini PetscScalar *v,*av; 1522f3ef73ceSBarry Smith PetscViewerFormat format; 15235f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 1524ace3abfcSBarry Smith PetscBool allreal = PETSC_TRUE; 15255f481a85SSatish Balay #endif 1526932b0c3eSLois Curfman McInnes 15273a40ed3dSBarry Smith PetscFunctionBegin; 1528ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr); 1529b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1530456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 15313a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 1532fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1533d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1534d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 1535ca15aa20SStefano Zampini v = av + i; 153677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1537d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1538aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1539329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 154057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr); 1541329f5518SBarry Smith } else if (PetscRealPart(*v)) { 154257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr); 15436831982aSBarry Smith } 154480cd9d93SLois Curfman McInnes #else 15456831982aSBarry Smith if (*v) { 154657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr); 15476831982aSBarry Smith } 154880cd9d93SLois Curfman McInnes #endif 15491b807ce4Svictorle v += a->lda; 155080cd9d93SLois Curfman McInnes } 1551b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 155280cd9d93SLois Curfman McInnes } 1553d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 15543a40ed3dSBarry Smith } else { 1555d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1556aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 155747989497SBarry Smith /* determine if matrix has all real values */ 1558ca15aa20SStefano Zampini v = av; 1559d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 1560ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;} 156147989497SBarry Smith } 156247989497SBarry Smith #endif 1563fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 15643a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1565d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1566d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1567fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 1568ffac6cdbSBarry Smith } 1569ffac6cdbSBarry Smith 1570d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 1571ca15aa20SStefano Zampini v = av + i; 1572d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1573aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 157447989497SBarry Smith if (allreal) { 1575c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr); 157647989497SBarry Smith } else { 1577c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr); 157847989497SBarry Smith } 1579289bc588SBarry Smith #else 1580c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr); 1581289bc588SBarry Smith #endif 15821b807ce4Svictorle v += a->lda; 1583289bc588SBarry Smith } 1584b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1585289bc588SBarry Smith } 1586fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 1587b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 1588ffac6cdbSBarry Smith } 1589d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1590da3a660dSBarry Smith } 1591ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr); 1592b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15933a40ed3dSBarry Smith PetscFunctionReturn(0); 1594289bc588SBarry Smith } 1595289bc588SBarry Smith 15969804daf3SBarry Smith #include <petscdraw.h> 1597e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 1598f1af5d2fSBarry Smith { 1599f1af5d2fSBarry Smith Mat A = (Mat) Aa; 16006849ba73SBarry Smith PetscErrorCode ierr; 1601383922c3SLisandro Dalcin PetscInt m = A->rmap->n,n = A->cmap->n,i,j; 1602383922c3SLisandro Dalcin int color = PETSC_DRAW_WHITE; 1603ca15aa20SStefano Zampini const PetscScalar *v; 1604b0a32e0cSBarry Smith PetscViewer viewer; 1605b05fc000SLisandro Dalcin PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1606f3ef73ceSBarry Smith PetscViewerFormat format; 1607f1af5d2fSBarry Smith 1608f1af5d2fSBarry Smith PetscFunctionBegin; 1609f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1610b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1611b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1612f1af5d2fSBarry Smith 1613f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 1614ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr); 1615fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1616383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1617f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 1618f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 1619383922c3SLisandro Dalcin x_l = j; x_r = x_l + 1.0; 1620f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1621f1af5d2fSBarry Smith y_l = m - i - 1.0; 1622f1af5d2fSBarry Smith y_r = y_l + 1.0; 1623ca15aa20SStefano Zampini if (PetscRealPart(v[j*m+i]) > 0.) color = PETSC_DRAW_RED; 1624ca15aa20SStefano Zampini else if (PetscRealPart(v[j*m+i]) < 0.) color = PETSC_DRAW_BLUE; 1625ca15aa20SStefano Zampini else continue; 1626b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1627f1af5d2fSBarry Smith } 1628f1af5d2fSBarry Smith } 1629383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1630f1af5d2fSBarry Smith } else { 1631f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1632f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1633b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1634b05fc000SLisandro Dalcin PetscDraw popup; 1635b05fc000SLisandro Dalcin 1636f1af5d2fSBarry Smith for (i=0; i < m*n; i++) { 1637f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1638f1af5d2fSBarry Smith } 1639383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 1640b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 164145f3bb6eSLisandro Dalcin ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1642383922c3SLisandro Dalcin 1643383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1644f1af5d2fSBarry Smith for (j=0; j<n; j++) { 1645f1af5d2fSBarry Smith x_l = j; 1646f1af5d2fSBarry Smith x_r = x_l + 1.0; 1647f1af5d2fSBarry Smith for (i=0; i<m; i++) { 1648f1af5d2fSBarry Smith y_l = m - i - 1.0; 1649f1af5d2fSBarry Smith y_r = y_l + 1.0; 1650b05fc000SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv); 1651b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1652f1af5d2fSBarry Smith } 1653f1af5d2fSBarry Smith } 1654383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1655f1af5d2fSBarry Smith } 1656ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr); 1657f1af5d2fSBarry Smith PetscFunctionReturn(0); 1658f1af5d2fSBarry Smith } 1659f1af5d2fSBarry Smith 1660e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1661f1af5d2fSBarry Smith { 1662b0a32e0cSBarry Smith PetscDraw draw; 1663ace3abfcSBarry Smith PetscBool isnull; 1664329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1665dfbe8321SBarry Smith PetscErrorCode ierr; 1666f1af5d2fSBarry Smith 1667f1af5d2fSBarry Smith PetscFunctionBegin; 1668b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1669b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1670abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1671f1af5d2fSBarry Smith 1672d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1673f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1674b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1675832b7cebSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1676b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 16770298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1678832b7cebSLisandro Dalcin ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1679f1af5d2fSBarry Smith PetscFunctionReturn(0); 1680f1af5d2fSBarry Smith } 1681f1af5d2fSBarry Smith 1682dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1683932b0c3eSLois Curfman McInnes { 1684dfbe8321SBarry Smith PetscErrorCode ierr; 1685ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw; 1686932b0c3eSLois Curfman McInnes 16873a40ed3dSBarry Smith PetscFunctionBegin; 1688251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1689251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1690251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 16910f5bd95cSBarry Smith 1692c45a1595SBarry Smith if (iascii) { 1693c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 16940f5bd95cSBarry Smith } else if (isbinary) { 1695637a0070SStefano Zampini ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr); 1696f1af5d2fSBarry Smith } else if (isdraw) { 1697f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 1698932b0c3eSLois Curfman McInnes } 16993a40ed3dSBarry Smith PetscFunctionReturn(0); 1700932b0c3eSLois Curfman McInnes } 1701289bc588SBarry Smith 1702637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array) 1703d3042a70SBarry Smith { 1704d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1705d3042a70SBarry Smith 1706d3042a70SBarry Smith PetscFunctionBegin; 17075ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17085ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17095ea7661aSPierre Jolivet if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first"); 1710d3042a70SBarry Smith a->unplacedarray = a->v; 1711d3042a70SBarry Smith a->unplaced_user_alloc = a->user_alloc; 1712d3042a70SBarry Smith a->v = (PetscScalar*) array; 1713637a0070SStefano Zampini a->user_alloc = PETSC_TRUE; 1714ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1715c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1716ca15aa20SStefano Zampini #endif 1717d3042a70SBarry Smith PetscFunctionReturn(0); 1718d3042a70SBarry Smith } 1719d3042a70SBarry Smith 1720d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A) 1721d3042a70SBarry Smith { 1722d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1723d3042a70SBarry Smith 1724d3042a70SBarry Smith PetscFunctionBegin; 17255ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17265ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1727d3042a70SBarry Smith a->v = a->unplacedarray; 1728d3042a70SBarry Smith a->user_alloc = a->unplaced_user_alloc; 1729d3042a70SBarry Smith a->unplacedarray = NULL; 1730ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1731c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1732ca15aa20SStefano Zampini #endif 1733d3042a70SBarry Smith PetscFunctionReturn(0); 1734d3042a70SBarry Smith } 1735d3042a70SBarry Smith 1736d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array) 1737d5ea218eSStefano Zampini { 1738d5ea218eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1739d5ea218eSStefano Zampini PetscErrorCode ierr; 1740d5ea218eSStefano Zampini 1741d5ea218eSStefano Zampini PetscFunctionBegin; 17425ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17435ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1744d5ea218eSStefano Zampini if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); } 1745d5ea218eSStefano Zampini a->v = (PetscScalar*) array; 1746d5ea218eSStefano Zampini a->user_alloc = PETSC_FALSE; 1747d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 1748d5ea218eSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 1749d5ea218eSStefano Zampini #endif 1750d5ea218eSStefano Zampini PetscFunctionReturn(0); 1751d5ea218eSStefano Zampini } 1752d5ea218eSStefano Zampini 1753ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat) 1754289bc588SBarry Smith { 1755ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1756dfbe8321SBarry Smith PetscErrorCode ierr; 175790f02eecSBarry Smith 17583a40ed3dSBarry Smith PetscFunctionBegin; 1759aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1760d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n); 1761a5a9c739SBarry Smith #endif 17624396437dSToby Isaac ierr = VecDestroy(&(l->qrrhs));CHKERRQ(ierr); 17634905a7bcSToby Isaac ierr = PetscFree(l->tau);CHKERRQ(ierr); 176405b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 1765a49dc2a2SStefano Zampini ierr = PetscFree(l->fwork);CHKERRQ(ierr); 1766abc3b08eSStefano Zampini ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr); 17676857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1768637a0070SStefano Zampini if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);} 17695ea7661aSPierre Jolivet if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17705ea7661aSPierre Jolivet if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17716947451fSStefano Zampini ierr = VecDestroy(&l->cvec);CHKERRQ(ierr); 17725ea7661aSPierre Jolivet ierr = MatDestroy(&l->cmat);CHKERRQ(ierr); 1773bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1774dbd8c25aSHong Zhang 1775f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 17764905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL);CHKERRQ(ierr); 17774905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorNumeric_C",NULL);CHKERRQ(ierr); 17784905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorSymbolic_C",NULL);CHKERRQ(ierr); 177949a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 1780ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 1781bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 178252c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 1783d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 1784d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 1785d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 178652c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 178752c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 17886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 17896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 17908baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr); 17918baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17928baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr); 17938baccfbdSHong Zhang #endif 1794d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1795d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL);CHKERRQ(ierr); 1796d24d4204SJose E. Roman #endif 17972bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17982bf066beSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr); 17994222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr); 18004222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr); 18012bf066beSStefano Zampini #endif 1802bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 18034222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 18044222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr); 18054222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr); 18064222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr); 180752c5f739Sprj- 180886aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 180986aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 18106947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 18116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 18126947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 18136947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 18146947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 18156947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 18165ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 18175ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 18183a40ed3dSBarry Smith PetscFunctionReturn(0); 1819289bc588SBarry Smith } 1820289bc588SBarry Smith 1821e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1822289bc588SBarry Smith { 1823c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 18246849ba73SBarry Smith PetscErrorCode ierr; 18256536e3caSStefano Zampini PetscInt k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n; 182687828ca2SBarry Smith PetscScalar *v,tmp; 182748b35521SBarry Smith 18283a40ed3dSBarry Smith PetscFunctionBegin; 18296536e3caSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 18306536e3caSStefano Zampini if (m == n) { /* in place transpose */ 1831ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 1832d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1833289bc588SBarry Smith for (k=0; k<j; k++) { 18341b807ce4Svictorle tmp = v[j + k*M]; 18351b807ce4Svictorle v[j + k*M] = v[k + j*M]; 18361b807ce4Svictorle v[k + j*M] = tmp; 1837289bc588SBarry Smith } 1838289bc588SBarry Smith } 1839ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 18406536e3caSStefano Zampini } else { /* reuse memory, temporary allocates new memory */ 18416536e3caSStefano Zampini PetscScalar *v2; 18426536e3caSStefano Zampini PetscLayout tmplayout; 18436536e3caSStefano Zampini 18446536e3caSStefano Zampini ierr = PetscMalloc1((size_t)m*n,&v2);CHKERRQ(ierr); 18456536e3caSStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 18466536e3caSStefano Zampini for (j=0; j<n; j++) { 18476536e3caSStefano Zampini for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M]; 18486536e3caSStefano Zampini } 18496536e3caSStefano Zampini ierr = PetscArraycpy(v,v2,(size_t)m*n);CHKERRQ(ierr); 18506536e3caSStefano Zampini ierr = PetscFree(v2);CHKERRQ(ierr); 18516536e3caSStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 18526536e3caSStefano Zampini /* cleanup size dependent quantities */ 18536536e3caSStefano Zampini ierr = VecDestroy(&mat->cvec);CHKERRQ(ierr); 18546536e3caSStefano Zampini ierr = MatDestroy(&mat->cmat);CHKERRQ(ierr); 18556536e3caSStefano Zampini ierr = PetscFree(mat->pivots);CHKERRQ(ierr); 18566536e3caSStefano Zampini ierr = PetscFree(mat->fwork);CHKERRQ(ierr); 18576536e3caSStefano Zampini ierr = MatDestroy(&mat->ptapwork);CHKERRQ(ierr); 18586536e3caSStefano Zampini /* swap row/col layouts */ 18596536e3caSStefano Zampini mat->lda = n; 18606536e3caSStefano Zampini tmplayout = A->rmap; 18616536e3caSStefano Zampini A->rmap = A->cmap; 18626536e3caSStefano Zampini A->cmap = tmplayout; 18636536e3caSStefano Zampini } 18643a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1865d3e5ee88SLois Curfman McInnes Mat tmat; 1866ec8511deSBarry Smith Mat_SeqDense *tmatd; 186787828ca2SBarry Smith PetscScalar *v2; 1868af36a384SStefano Zampini PetscInt M2; 1869ea709b57SSatish Balay 18706536e3caSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1871ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr); 1872d0f46423SBarry Smith ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr); 18737adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 18740298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr); 1875ca15aa20SStefano Zampini } else tmat = *matout; 1876ca15aa20SStefano Zampini 1877ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr); 1878ca15aa20SStefano Zampini ierr = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr); 1879ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 1880ca15aa20SStefano Zampini M2 = tmatd->lda; 1881d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 1882af36a384SStefano Zampini for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M]; 1883d3e5ee88SLois Curfman McInnes } 1884ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr); 1885ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr); 18866d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18876d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18886536e3caSStefano Zampini *matout = tmat; 188948b35521SBarry Smith } 18903a40ed3dSBarry Smith PetscFunctionReturn(0); 1891289bc588SBarry Smith } 1892289bc588SBarry Smith 1893e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool *flg) 1894289bc588SBarry Smith { 1895c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1896c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 1897ca15aa20SStefano Zampini PetscInt i; 1898ca15aa20SStefano Zampini const PetscScalar *v1,*v2; 1899ca15aa20SStefano Zampini PetscErrorCode ierr; 19009ea5d5aeSSatish Balay 19013a40ed3dSBarry Smith PetscFunctionBegin; 1902d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1903d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1904ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr); 1905ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr); 1906ca15aa20SStefano Zampini for (i=0; i<A1->cmap->n; i++) { 1907ca15aa20SStefano Zampini ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr); 1908ca15aa20SStefano Zampini if (*flg == PETSC_FALSE) PetscFunctionReturn(0); 1909ca15aa20SStefano Zampini v1 += mat1->lda; 1910ca15aa20SStefano Zampini v2 += mat2->lda; 19111b807ce4Svictorle } 1912ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr); 1913ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr); 191477c4ece6SBarry Smith *flg = PETSC_TRUE; 19153a40ed3dSBarry Smith PetscFunctionReturn(0); 1916289bc588SBarry Smith } 1917289bc588SBarry Smith 1918e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1919289bc588SBarry Smith { 1920c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 192113f74950SBarry Smith PetscInt i,n,len; 1922ca15aa20SStefano Zampini PetscScalar *x; 1923ca15aa20SStefano Zampini const PetscScalar *vv; 1924ca15aa20SStefano Zampini PetscErrorCode ierr; 192544cd7ae7SLois Curfman McInnes 19263a40ed3dSBarry Smith PetscFunctionBegin; 19277a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 19281ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1929d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 1930ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr); 1931e32f2f54SBarry Smith if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 193244cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 1933ca15aa20SStefano Zampini x[i] = vv[i*mat->lda + i]; 1934289bc588SBarry Smith } 1935ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr); 19361ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 19373a40ed3dSBarry Smith PetscFunctionReturn(0); 1938289bc588SBarry Smith } 1939289bc588SBarry Smith 1940e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1941289bc588SBarry Smith { 1942c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1943f1ceaac6SMatthew G. Knepley const PetscScalar *l,*r; 1944ca15aa20SStefano Zampini PetscScalar x,*v,*vv; 1945dfbe8321SBarry Smith PetscErrorCode ierr; 1946d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 194755659b69SBarry Smith 19483a40ed3dSBarry Smith PetscFunctionBegin; 1949ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr); 195028988994SBarry Smith if (ll) { 19517a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 1952f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 1953e32f2f54SBarry Smith if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1954da3a660dSBarry Smith for (i=0; i<m; i++) { 1955da3a660dSBarry Smith x = l[i]; 1956ca15aa20SStefano Zampini v = vv + i; 1957b43bac26SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;} 1958da3a660dSBarry Smith } 1959f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 1960eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 1961da3a660dSBarry Smith } 196228988994SBarry Smith if (rr) { 19637a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 1964f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 1965e32f2f54SBarry Smith if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1966da3a660dSBarry Smith for (i=0; i<n; i++) { 1967da3a660dSBarry Smith x = r[i]; 1968ca15aa20SStefano Zampini v = vv + i*mat->lda; 19692205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 1970da3a660dSBarry Smith } 1971f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 1972eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 1973da3a660dSBarry Smith } 1974ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr); 19753a40ed3dSBarry Smith PetscFunctionReturn(0); 1976289bc588SBarry Smith } 1977289bc588SBarry Smith 1978ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1979289bc588SBarry Smith { 1980c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1981ca15aa20SStefano Zampini PetscScalar *v,*vv; 1982329f5518SBarry Smith PetscReal sum = 0.0; 1983d0f46423SBarry Smith PetscInt lda =mat->lda,m=A->rmap->n,i,j; 1984efee365bSSatish Balay PetscErrorCode ierr; 198555659b69SBarry Smith 19863a40ed3dSBarry Smith PetscFunctionBegin; 1987ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr); 1988ca15aa20SStefano Zampini v = vv; 1989289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1990a5ce6ee0Svictorle if (lda>m) { 1991d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1992ca15aa20SStefano Zampini v = vv+j*lda; 1993a5ce6ee0Svictorle for (i=0; i<m; i++) { 1994a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1995a5ce6ee0Svictorle } 1996a5ce6ee0Svictorle } 1997a5ce6ee0Svictorle } else { 1998570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16) 1999570b7f6dSBarry Smith PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n; 200073cf7048SBarry Smith PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one)); 2001570b7f6dSBarry Smith } 2002570b7f6dSBarry Smith #else 2003d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 2004329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 2005289bc588SBarry Smith } 2006a5ce6ee0Svictorle } 20078f1a2a5eSBarry Smith *nrm = PetscSqrtReal(sum); 2008570b7f6dSBarry Smith #endif 2009dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 20103a40ed3dSBarry Smith } else if (type == NORM_1) { 2011064f8208SBarry Smith *nrm = 0.0; 2012d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 2013ca15aa20SStefano Zampini v = vv + j*mat->lda; 2014289bc588SBarry Smith sum = 0.0; 2015d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 201633a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 2017289bc588SBarry Smith } 2018064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 2019289bc588SBarry Smith } 2020eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 20213a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 2022064f8208SBarry Smith *nrm = 0.0; 2023d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 2024ca15aa20SStefano Zampini v = vv + j; 2025289bc588SBarry Smith sum = 0.0; 2026d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 20271b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 2028289bc588SBarry Smith } 2029064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 2030289bc588SBarry Smith } 2031eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 2032e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm"); 2033ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr); 20343a40ed3dSBarry Smith PetscFunctionReturn(0); 2035289bc588SBarry Smith } 2036289bc588SBarry Smith 2037e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg) 2038289bc588SBarry Smith { 2039c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 204063ba0a88SBarry Smith PetscErrorCode ierr; 204167e560aaSBarry Smith 20423a40ed3dSBarry Smith PetscFunctionBegin; 2043b5a2b587SKris Buschelman switch (op) { 2044b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 20454e0d8c25SBarry Smith aij->roworiented = flg; 2046b5a2b587SKris Buschelman break; 2047512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 2048b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 20493971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 20508c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 205113fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 2052b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2053b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 20540f8fb01aSBarry Smith case MAT_IGNORE_ZERO_ENTRIES: 20555021d80fSJed Brown case MAT_IGNORE_LOWER_TRIANGULAR: 2056071fcb05SBarry Smith case MAT_SORTED_FULL: 20575021d80fSJed Brown ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 20585021d80fSJed Brown break; 20595021d80fSJed Brown case MAT_SPD: 206077e54ba9SKris Buschelman case MAT_SYMMETRIC: 206177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 20629a4540c5SBarry Smith case MAT_HERMITIAN: 20639a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 20645021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 206577e54ba9SKris Buschelman break; 2066b5a2b587SKris Buschelman default: 2067e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 20683a40ed3dSBarry Smith } 20693a40ed3dSBarry Smith PetscFunctionReturn(0); 2070289bc588SBarry Smith } 2071289bc588SBarry Smith 2072e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A) 20736f0a148fSBarry Smith { 2074ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 20756849ba73SBarry Smith PetscErrorCode ierr; 2076d0f46423SBarry Smith PetscInt lda=l->lda,m=A->rmap->n,j; 2077ca15aa20SStefano Zampini PetscScalar *v; 20783a40ed3dSBarry Smith 20793a40ed3dSBarry Smith PetscFunctionBegin; 2080ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 2081a5ce6ee0Svictorle if (lda>m) { 2082d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 2083ca15aa20SStefano Zampini ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr); 2084a5ce6ee0Svictorle } 2085a5ce6ee0Svictorle } else { 2086ca15aa20SStefano Zampini ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr); 2087a5ce6ee0Svictorle } 2088ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 20893a40ed3dSBarry Smith PetscFunctionReturn(0); 20906f0a148fSBarry Smith } 20916f0a148fSBarry Smith 2092e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 20936f0a148fSBarry Smith { 209497b48c8fSBarry Smith PetscErrorCode ierr; 2095ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 2096b9679d65SBarry Smith PetscInt m = l->lda, n = A->cmap->n, i,j; 2097ca15aa20SStefano Zampini PetscScalar *slot,*bb,*v; 209897b48c8fSBarry Smith const PetscScalar *xx; 209955659b69SBarry Smith 21003a40ed3dSBarry Smith PetscFunctionBegin; 210176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2102b9679d65SBarry Smith for (i=0; i<N; i++) { 2103b9679d65SBarry Smith if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 2104b9679d65SBarry Smith if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n); 2105b9679d65SBarry Smith } 210676bd3646SJed Brown } 2107ca15aa20SStefano Zampini if (!N) PetscFunctionReturn(0); 2108b9679d65SBarry Smith 210997b48c8fSBarry Smith /* fix right hand side if needed */ 211097b48c8fSBarry Smith if (x && b) { 211197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 211297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 21132205254eSKarl Rupp for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 211497b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 211597b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 211697b48c8fSBarry Smith } 211797b48c8fSBarry Smith 2118ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 21196f0a148fSBarry Smith for (i=0; i<N; i++) { 2120ca15aa20SStefano Zampini slot = v + rows[i]; 2121b9679d65SBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 21226f0a148fSBarry Smith } 2123f4df32b1SMatthew Knepley if (diag != 0.0) { 2124b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 21256f0a148fSBarry Smith for (i=0; i<N; i++) { 2126ca15aa20SStefano Zampini slot = v + (m+1)*rows[i]; 2127f4df32b1SMatthew Knepley *slot = diag; 21286f0a148fSBarry Smith } 21296f0a148fSBarry Smith } 2130ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 21313a40ed3dSBarry Smith PetscFunctionReturn(0); 21326f0a148fSBarry Smith } 2133557bce09SLois Curfman McInnes 213449a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda) 213549a6ff4bSBarry Smith { 213649a6ff4bSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 213749a6ff4bSBarry Smith 213849a6ff4bSBarry Smith PetscFunctionBegin; 213949a6ff4bSBarry Smith *lda = mat->lda; 214049a6ff4bSBarry Smith PetscFunctionReturn(0); 214149a6ff4bSBarry Smith } 214249a6ff4bSBarry Smith 2143637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array) 214464e87e97SBarry Smith { 2145c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 21463a40ed3dSBarry Smith 21473a40ed3dSBarry Smith PetscFunctionBegin; 2148616b8fbbSStefano Zampini if (mat->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 214964e87e97SBarry Smith *array = mat->v; 21503a40ed3dSBarry Smith PetscFunctionReturn(0); 215164e87e97SBarry Smith } 21520754003eSLois Curfman McInnes 2153637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array) 2154ff14e315SSatish Balay { 21553a40ed3dSBarry Smith PetscFunctionBegin; 2156637a0070SStefano Zampini *array = NULL; 21573a40ed3dSBarry Smith PetscFunctionReturn(0); 2158ff14e315SSatish Balay } 21590754003eSLois Curfman McInnes 2160dec5eb66SMatthew G Knepley /*@C 216149a6ff4bSBarry Smith MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray() 216249a6ff4bSBarry Smith 2163ad16ce7aSStefano Zampini Not collective 216449a6ff4bSBarry Smith 216549a6ff4bSBarry Smith Input Parameter: 216649a6ff4bSBarry Smith . mat - a MATSEQDENSE or MATMPIDENSE matrix 216749a6ff4bSBarry Smith 216849a6ff4bSBarry Smith Output Parameter: 216949a6ff4bSBarry Smith . lda - the leading dimension 217049a6ff4bSBarry Smith 217149a6ff4bSBarry Smith Level: intermediate 217249a6ff4bSBarry Smith 2173ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA() 217449a6ff4bSBarry Smith @*/ 217549a6ff4bSBarry Smith PetscErrorCode MatDenseGetLDA(Mat A,PetscInt *lda) 217649a6ff4bSBarry Smith { 217749a6ff4bSBarry Smith PetscErrorCode ierr; 217849a6ff4bSBarry Smith 217949a6ff4bSBarry Smith PetscFunctionBegin; 2180d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2181d5ea218eSStefano Zampini PetscValidPointer(lda,2); 218249a6ff4bSBarry Smith ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr); 218349a6ff4bSBarry Smith PetscFunctionReturn(0); 218449a6ff4bSBarry Smith } 218549a6ff4bSBarry Smith 218649a6ff4bSBarry Smith /*@C 2187ad16ce7aSStefano Zampini MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix 2188ad16ce7aSStefano Zampini 2189ad16ce7aSStefano Zampini Not collective 2190ad16ce7aSStefano Zampini 2191ad16ce7aSStefano Zampini Input Parameter: 2192ad16ce7aSStefano Zampini + mat - a MATSEQDENSE or MATMPIDENSE matrix 2193ad16ce7aSStefano Zampini - lda - the leading dimension 2194ad16ce7aSStefano Zampini 2195ad16ce7aSStefano Zampini Level: intermediate 2196ad16ce7aSStefano Zampini 2197ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA() 2198ad16ce7aSStefano Zampini @*/ 2199ad16ce7aSStefano Zampini PetscErrorCode MatDenseSetLDA(Mat A,PetscInt lda) 2200ad16ce7aSStefano Zampini { 2201ad16ce7aSStefano Zampini PetscErrorCode ierr; 2202ad16ce7aSStefano Zampini 2203ad16ce7aSStefano Zampini PetscFunctionBegin; 2204ad16ce7aSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2205ad16ce7aSStefano Zampini ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr); 2206ad16ce7aSStefano Zampini PetscFunctionReturn(0); 2207ad16ce7aSStefano Zampini } 2208ad16ce7aSStefano Zampini 2209ad16ce7aSStefano Zampini /*@C 22106947451fSStefano Zampini MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored 221173a71a0fSBarry Smith 22128572280aSBarry Smith Logically Collective on Mat 221373a71a0fSBarry Smith 221473a71a0fSBarry Smith Input Parameter: 22156947451fSStefano Zampini . mat - a dense matrix 221673a71a0fSBarry Smith 221773a71a0fSBarry Smith Output Parameter: 221873a71a0fSBarry Smith . array - pointer to the data 221973a71a0fSBarry Smith 222073a71a0fSBarry Smith Level: intermediate 222173a71a0fSBarry Smith 22226947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite() 222373a71a0fSBarry Smith @*/ 22248c778c55SBarry Smith PetscErrorCode MatDenseGetArray(Mat A,PetscScalar **array) 222573a71a0fSBarry Smith { 222673a71a0fSBarry Smith PetscErrorCode ierr; 222773a71a0fSBarry Smith 222873a71a0fSBarry Smith PetscFunctionBegin; 2229d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2230d5ea218eSStefano Zampini PetscValidPointer(array,2); 22318c778c55SBarry Smith ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 223273a71a0fSBarry Smith PetscFunctionReturn(0); 223373a71a0fSBarry Smith } 223473a71a0fSBarry Smith 2235dec5eb66SMatthew G Knepley /*@C 2236579dbff0SBarry Smith MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray() 223773a71a0fSBarry Smith 22388572280aSBarry Smith Logically Collective on Mat 22398572280aSBarry Smith 22408572280aSBarry Smith Input Parameters: 22416947451fSStefano Zampini + mat - a dense matrix 2242a2b725a8SWilliam Gropp - array - pointer to the data 22438572280aSBarry Smith 22448572280aSBarry Smith Level: intermediate 22458572280aSBarry Smith 22466947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite() 22478572280aSBarry Smith @*/ 22488572280aSBarry Smith PetscErrorCode MatDenseRestoreArray(Mat A,PetscScalar **array) 22498572280aSBarry Smith { 22508572280aSBarry Smith PetscErrorCode ierr; 22518572280aSBarry Smith 22528572280aSBarry Smith PetscFunctionBegin; 2253d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2254d5ea218eSStefano Zampini PetscValidPointer(array,2); 22558572280aSBarry Smith ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 22568572280aSBarry Smith ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2257637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2258637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 2259637a0070SStefano Zampini #endif 22608572280aSBarry Smith PetscFunctionReturn(0); 22618572280aSBarry Smith } 22628572280aSBarry Smith 22638572280aSBarry Smith /*@C 22646947451fSStefano Zampini MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored 22658572280aSBarry Smith 22668572280aSBarry Smith Not Collective 22678572280aSBarry Smith 22688572280aSBarry Smith Input Parameter: 22696947451fSStefano Zampini . mat - a dense matrix 22708572280aSBarry Smith 22718572280aSBarry Smith Output Parameter: 22728572280aSBarry Smith . array - pointer to the data 22738572280aSBarry Smith 22748572280aSBarry Smith Level: intermediate 22758572280aSBarry Smith 22766947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite() 22778572280aSBarry Smith @*/ 22788572280aSBarry Smith PetscErrorCode MatDenseGetArrayRead(Mat A,const PetscScalar **array) 22798572280aSBarry Smith { 22808572280aSBarry Smith PetscErrorCode ierr; 22818572280aSBarry Smith 22828572280aSBarry Smith PetscFunctionBegin; 2283d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2284d5ea218eSStefano Zampini PetscValidPointer(array,2); 22858572280aSBarry Smith ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr); 22868572280aSBarry Smith PetscFunctionReturn(0); 22878572280aSBarry Smith } 22888572280aSBarry Smith 22898572280aSBarry Smith /*@C 22906947451fSStefano Zampini MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead() 22918572280aSBarry Smith 229273a71a0fSBarry Smith Not Collective 229373a71a0fSBarry Smith 229473a71a0fSBarry Smith Input Parameters: 22956947451fSStefano Zampini + mat - a dense matrix 2296a2b725a8SWilliam Gropp - array - pointer to the data 229773a71a0fSBarry Smith 229873a71a0fSBarry Smith Level: intermediate 229973a71a0fSBarry Smith 23006947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite() 230173a71a0fSBarry Smith @*/ 23028572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead(Mat A,const PetscScalar **array) 230373a71a0fSBarry Smith { 230473a71a0fSBarry Smith PetscErrorCode ierr; 230573a71a0fSBarry Smith 230673a71a0fSBarry Smith PetscFunctionBegin; 2307d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2308d5ea218eSStefano Zampini PetscValidPointer(array,2); 23098572280aSBarry Smith ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr); 231073a71a0fSBarry Smith PetscFunctionReturn(0); 231173a71a0fSBarry Smith } 231273a71a0fSBarry Smith 23136947451fSStefano Zampini /*@C 23146947451fSStefano Zampini MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored 23156947451fSStefano Zampini 23166947451fSStefano Zampini Not Collective 23176947451fSStefano Zampini 23186947451fSStefano Zampini Input Parameter: 23196947451fSStefano Zampini . mat - a dense matrix 23206947451fSStefano Zampini 23216947451fSStefano Zampini Output Parameter: 23226947451fSStefano Zampini . array - pointer to the data 23236947451fSStefano Zampini 23246947451fSStefano Zampini Level: intermediate 23256947451fSStefano Zampini 23266947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead() 23276947451fSStefano Zampini @*/ 23286947451fSStefano Zampini PetscErrorCode MatDenseGetArrayWrite(Mat A,PetscScalar **array) 23296947451fSStefano Zampini { 23306947451fSStefano Zampini PetscErrorCode ierr; 23316947451fSStefano Zampini 23326947451fSStefano Zampini PetscFunctionBegin; 2333d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2334d5ea218eSStefano Zampini PetscValidPointer(array,2); 23356947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 23366947451fSStefano Zampini PetscFunctionReturn(0); 23376947451fSStefano Zampini } 23386947451fSStefano Zampini 23396947451fSStefano Zampini /*@C 23406947451fSStefano Zampini MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite() 23416947451fSStefano Zampini 23426947451fSStefano Zampini Not Collective 23436947451fSStefano Zampini 23446947451fSStefano Zampini Input Parameters: 23456947451fSStefano Zampini + mat - a dense matrix 23466947451fSStefano Zampini - array - pointer to the data 23476947451fSStefano Zampini 23486947451fSStefano Zampini Level: intermediate 23496947451fSStefano Zampini 23506947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead() 23516947451fSStefano Zampini @*/ 23526947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite(Mat A,PetscScalar **array) 23536947451fSStefano Zampini { 23546947451fSStefano Zampini PetscErrorCode ierr; 23556947451fSStefano Zampini 23566947451fSStefano Zampini PetscFunctionBegin; 2357d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2358d5ea218eSStefano Zampini PetscValidPointer(array,2); 23596947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 23606947451fSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 23616947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA) 23626947451fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 23636947451fSStefano Zampini #endif 23646947451fSStefano Zampini PetscFunctionReturn(0); 23656947451fSStefano Zampini } 23666947451fSStefano Zampini 2367023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 23680754003eSLois Curfman McInnes { 2369c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 23706849ba73SBarry Smith PetscErrorCode ierr; 2371ca15aa20SStefano Zampini PetscInt i,j,nrows,ncols,blda; 23725d0c19d7SBarry Smith const PetscInt *irow,*icol; 237387828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 23740754003eSLois Curfman McInnes Mat newmat; 23750754003eSLois Curfman McInnes 23763a40ed3dSBarry Smith PetscFunctionBegin; 237778b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 237878b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 2379e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 2380e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 23810754003eSLois Curfman McInnes 2382182d2002SSatish Balay /* Check submatrixcall */ 2383182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 238413f74950SBarry Smith PetscInt n_cols,n_rows; 2385182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 238621a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 2387f746d493SDmitry Karpeev /* resize the result matrix to match number of requested rows/columns */ 2388c61587bbSBarry Smith ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 238921a2c019SBarry Smith } 2390182d2002SSatish Balay newmat = *B; 2391182d2002SSatish Balay } else { 23920754003eSLois Curfman McInnes /* Create and fill new matrix */ 2393ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2394f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 23957adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 23960298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 2397182d2002SSatish Balay } 2398182d2002SSatish Balay 2399182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 2400ca15aa20SStefano Zampini ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr); 2401ca15aa20SStefano Zampini ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr); 2402182d2002SSatish Balay for (i=0; i<ncols; i++) { 24036de62eeeSBarry Smith av = v + mat->lda*icol[i]; 2404ca15aa20SStefano Zampini for (j=0; j<nrows; j++) bv[j] = av[irow[j]]; 2405ca15aa20SStefano Zampini bv += blda; 24060754003eSLois Curfman McInnes } 2407ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr); 2408182d2002SSatish Balay 2409182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 24106d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24116d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24120754003eSLois Curfman McInnes 24130754003eSLois Curfman McInnes /* Free work space */ 241478b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 241578b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 2416182d2002SSatish Balay *B = newmat; 24173a40ed3dSBarry Smith PetscFunctionReturn(0); 24180754003eSLois Curfman McInnes } 24190754003eSLois Curfman McInnes 24207dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 2421905e6a2fSBarry Smith { 24226849ba73SBarry Smith PetscErrorCode ierr; 242313f74950SBarry Smith PetscInt i; 2424905e6a2fSBarry Smith 24253a40ed3dSBarry Smith PetscFunctionBegin; 2426905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 24273741e84bSPierre Jolivet ierr = PetscCalloc1(n,B);CHKERRQ(ierr); 2428905e6a2fSBarry Smith } 2429905e6a2fSBarry Smith 2430905e6a2fSBarry Smith for (i=0; i<n; i++) { 2431023c16fcSToby Isaac ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i]);CHKERRQ(ierr); 2432905e6a2fSBarry Smith } 24333a40ed3dSBarry Smith PetscFunctionReturn(0); 2434905e6a2fSBarry Smith } 2435905e6a2fSBarry Smith 2436e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 2437c0aa2d19SHong Zhang { 2438c0aa2d19SHong Zhang PetscFunctionBegin; 2439c0aa2d19SHong Zhang PetscFunctionReturn(0); 2440c0aa2d19SHong Zhang } 2441c0aa2d19SHong Zhang 2442e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 2443c0aa2d19SHong Zhang { 2444c0aa2d19SHong Zhang PetscFunctionBegin; 2445c0aa2d19SHong Zhang PetscFunctionReturn(0); 2446c0aa2d19SHong Zhang } 2447c0aa2d19SHong Zhang 2448a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 24494b0e389bSBarry Smith { 24504b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data; 24516849ba73SBarry Smith PetscErrorCode ierr; 2452ca15aa20SStefano Zampini const PetscScalar *va; 2453ca15aa20SStefano Zampini PetscScalar *vb; 2454d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 24553a40ed3dSBarry Smith 24563a40ed3dSBarry Smith PetscFunctionBegin; 245733f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 245833f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 2459cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 24603a40ed3dSBarry Smith PetscFunctionReturn(0); 24613a40ed3dSBarry Smith } 2462e32f2f54SBarry Smith if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 2463ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr); 2464ca15aa20SStefano Zampini ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr); 2465a5ce6ee0Svictorle if (lda1>m || lda2>m) { 24660dbb7854Svictorle for (j=0; j<n; j++) { 2467ca15aa20SStefano Zampini ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr); 2468a5ce6ee0Svictorle } 2469a5ce6ee0Svictorle } else { 2470ca15aa20SStefano Zampini ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr); 2471a5ce6ee0Svictorle } 2472ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr); 2473ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr); 2474ca15aa20SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2475ca15aa20SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2476273d9f13SBarry Smith PetscFunctionReturn(0); 2477273d9f13SBarry Smith } 2478273d9f13SBarry Smith 2479e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A) 2480273d9f13SBarry Smith { 2481dfbe8321SBarry Smith PetscErrorCode ierr; 2482273d9f13SBarry Smith 2483273d9f13SBarry Smith PetscFunctionBegin; 248418992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 248518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 248618992e5dSStefano Zampini if (!A->preallocated) { 2487f4259b30SLisandro Dalcin ierr = MatSeqDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 248818992e5dSStefano Zampini } 24893a40ed3dSBarry Smith PetscFunctionReturn(0); 24904b0e389bSBarry Smith } 24914b0e389bSBarry Smith 2492ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A) 2493ba337c44SJed Brown { 24944396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *) A->data; 2495ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 24964396437dSToby Isaac PetscInt min = PetscMin(A->rmap->n,A->cmap->n); 2497ca15aa20SStefano Zampini PetscScalar *aa; 2498ca15aa20SStefano Zampini PetscErrorCode ierr; 2499ba337c44SJed Brown 2500ba337c44SJed Brown PetscFunctionBegin; 2501ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr); 2502ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 2503ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr); 25044396437dSToby Isaac if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]); 2505ba337c44SJed Brown PetscFunctionReturn(0); 2506ba337c44SJed Brown } 2507ba337c44SJed Brown 2508ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A) 2509ba337c44SJed Brown { 2510ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 2511ca15aa20SStefano Zampini PetscScalar *aa; 2512ca15aa20SStefano Zampini PetscErrorCode ierr; 2513ba337c44SJed Brown 2514ba337c44SJed Brown PetscFunctionBegin; 2515ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr); 2516ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 2517ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr); 2518ba337c44SJed Brown PetscFunctionReturn(0); 2519ba337c44SJed Brown } 2520ba337c44SJed Brown 2521ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 2522ba337c44SJed Brown { 2523ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 2524ca15aa20SStefano Zampini PetscScalar *aa; 2525ca15aa20SStefano Zampini PetscErrorCode ierr; 2526ba337c44SJed Brown 2527ba337c44SJed Brown PetscFunctionBegin; 2528ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr); 2529ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 2530ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr); 2531ba337c44SJed Brown PetscFunctionReturn(0); 2532ba337c44SJed Brown } 2533284134d9SBarry Smith 2534a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 25354222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 2536a9fe9ddaSSatish Balay { 2537ee16a9a1SHong Zhang PetscErrorCode ierr; 2538d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 25397a3c3d58SStefano Zampini PetscBool cisdense; 2540a9fe9ddaSSatish Balay 2541ee16a9a1SHong Zhang PetscFunctionBegin; 25424222ddf1SHong Zhang ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr); 25437a3c3d58SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 25447a3c3d58SStefano Zampini if (!cisdense) { 25457a3c3d58SStefano Zampini PetscBool flg; 25467a3c3d58SStefano Zampini 2547ca15aa20SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr); 25484222ddf1SHong Zhang ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr); 25497a3c3d58SStefano Zampini } 255018992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2551ee16a9a1SHong Zhang PetscFunctionReturn(0); 2552ee16a9a1SHong Zhang } 2553a9fe9ddaSSatish Balay 2554a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 2555a9fe9ddaSSatish Balay { 25566718818eSStefano Zampini Mat_SeqDense *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data; 25570805154bSBarry Smith PetscBLASInt m,n,k; 2558ca15aa20SStefano Zampini const PetscScalar *av,*bv; 2559ca15aa20SStefano Zampini PetscScalar *cv; 2560a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 2561c2916339SPierre Jolivet PetscErrorCode ierr; 2562a9fe9ddaSSatish Balay 2563a9fe9ddaSSatish Balay PetscFunctionBegin; 25648208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr); 25658208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr); 2566c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 256749d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 2568ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr); 2569ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr); 25706718818eSStefano Zampini ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr); 2571ca15aa20SStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 2572ca15aa20SStefano Zampini ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr); 2573ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr); 2574ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr); 25756718818eSStefano Zampini ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr); 2576a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2577a9fe9ddaSSatish Balay } 2578a9fe9ddaSSatish Balay 25794222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 258069f65d41SStefano Zampini { 258169f65d41SStefano Zampini PetscErrorCode ierr; 258269f65d41SStefano Zampini PetscInt m=A->rmap->n,n=B->rmap->n; 25837a3c3d58SStefano Zampini PetscBool cisdense; 258469f65d41SStefano Zampini 258569f65d41SStefano Zampini PetscFunctionBegin; 25864222ddf1SHong Zhang ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr); 25877a3c3d58SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 25887a3c3d58SStefano Zampini if (!cisdense) { 25897a3c3d58SStefano Zampini PetscBool flg; 25907a3c3d58SStefano Zampini 2591ca15aa20SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr); 25924222ddf1SHong Zhang ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr); 25937a3c3d58SStefano Zampini } 259418992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 259569f65d41SStefano Zampini PetscFunctionReturn(0); 259669f65d41SStefano Zampini } 259769f65d41SStefano Zampini 259869f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 259969f65d41SStefano Zampini { 260069f65d41SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 260169f65d41SStefano Zampini Mat_SeqDense *b = (Mat_SeqDense*)B->data; 260269f65d41SStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)C->data; 26036718818eSStefano Zampini const PetscScalar *av,*bv; 26046718818eSStefano Zampini PetscScalar *cv; 260569f65d41SStefano Zampini PetscBLASInt m,n,k; 260669f65d41SStefano Zampini PetscScalar _DOne=1.0,_DZero=0.0; 260769f65d41SStefano Zampini PetscErrorCode ierr; 260869f65d41SStefano Zampini 260969f65d41SStefano Zampini PetscFunctionBegin; 261049d0e964SStefano Zampini ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr); 261149d0e964SStefano Zampini ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr); 261269f65d41SStefano Zampini ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 261349d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 26146718818eSStefano Zampini ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr); 26156718818eSStefano Zampini ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr); 26166718818eSStefano Zampini ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr); 26176718818eSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 26186718818eSStefano Zampini ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr); 26196718818eSStefano Zampini ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr); 26206718818eSStefano Zampini ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr); 2621ca15aa20SStefano Zampini ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr); 262269f65d41SStefano Zampini PetscFunctionReturn(0); 262369f65d41SStefano Zampini } 262469f65d41SStefano Zampini 26254222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 2626a9fe9ddaSSatish Balay { 2627ee16a9a1SHong Zhang PetscErrorCode ierr; 2628d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 26297a3c3d58SStefano Zampini PetscBool cisdense; 2630a9fe9ddaSSatish Balay 2631ee16a9a1SHong Zhang PetscFunctionBegin; 26324222ddf1SHong Zhang ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr); 26337a3c3d58SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 26347a3c3d58SStefano Zampini if (!cisdense) { 26357a3c3d58SStefano Zampini PetscBool flg; 26367a3c3d58SStefano Zampini 2637ca15aa20SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr); 26384222ddf1SHong Zhang ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr); 26397a3c3d58SStefano Zampini } 264018992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2641ee16a9a1SHong Zhang PetscFunctionReturn(0); 2642ee16a9a1SHong Zhang } 2643a9fe9ddaSSatish Balay 264475648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 2645a9fe9ddaSSatish Balay { 2646a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2647a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 2648a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 26496718818eSStefano Zampini const PetscScalar *av,*bv; 26506718818eSStefano Zampini PetscScalar *cv; 26510805154bSBarry Smith PetscBLASInt m,n,k; 2652a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 2653c5df96a5SBarry Smith PetscErrorCode ierr; 2654a9fe9ddaSSatish Balay 2655a9fe9ddaSSatish Balay PetscFunctionBegin; 26568208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr); 26578208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr); 2658c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr); 265949d0e964SStefano Zampini if (!m || !n || !k) PetscFunctionReturn(0); 26606718818eSStefano Zampini ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr); 26616718818eSStefano Zampini ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr); 26626718818eSStefano Zampini ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr); 26636718818eSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda)); 26646718818eSStefano Zampini ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr); 26656718818eSStefano Zampini ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr); 26666718818eSStefano Zampini ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr); 2667ca15aa20SStefano Zampini ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr); 2668a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2669a9fe9ddaSSatish Balay } 2670985db425SBarry Smith 26714222ddf1SHong Zhang /* ----------------------------------------------- */ 26724222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C) 26734222ddf1SHong Zhang { 26744222ddf1SHong Zhang PetscFunctionBegin; 26754222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense; 26764222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 26774222ddf1SHong Zhang PetscFunctionReturn(0); 26784222ddf1SHong Zhang } 26794222ddf1SHong Zhang 26804222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C) 26814222ddf1SHong Zhang { 26824222ddf1SHong Zhang PetscFunctionBegin; 26834222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense; 26844222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 26854222ddf1SHong Zhang PetscFunctionReturn(0); 26864222ddf1SHong Zhang } 26874222ddf1SHong Zhang 26884222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C) 26894222ddf1SHong Zhang { 26904222ddf1SHong Zhang PetscFunctionBegin; 26914222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense; 26924222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 26934222ddf1SHong Zhang PetscFunctionReturn(0); 26944222ddf1SHong Zhang } 26954222ddf1SHong Zhang 26964222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C) 26974222ddf1SHong Zhang { 26984222ddf1SHong Zhang PetscErrorCode ierr; 26994222ddf1SHong Zhang Mat_Product *product = C->product; 27004222ddf1SHong Zhang 27014222ddf1SHong Zhang PetscFunctionBegin; 27024222ddf1SHong Zhang switch (product->type) { 27034222ddf1SHong Zhang case MATPRODUCT_AB: 27044222ddf1SHong Zhang ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr); 27054222ddf1SHong Zhang break; 27064222ddf1SHong Zhang case MATPRODUCT_AtB: 27074222ddf1SHong Zhang ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr); 27084222ddf1SHong Zhang break; 27094222ddf1SHong Zhang case MATPRODUCT_ABt: 27104222ddf1SHong Zhang ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr); 27114222ddf1SHong Zhang break; 27126718818eSStefano Zampini default: 27134222ddf1SHong Zhang break; 27144222ddf1SHong Zhang } 27154222ddf1SHong Zhang PetscFunctionReturn(0); 27164222ddf1SHong Zhang } 27174222ddf1SHong Zhang /* ----------------------------------------------- */ 27184222ddf1SHong Zhang 2719e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 2720985db425SBarry Smith { 2721985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2722985db425SBarry Smith PetscErrorCode ierr; 2723d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2724985db425SBarry Smith PetscScalar *x; 2725ca15aa20SStefano Zampini const PetscScalar *aa; 2726985db425SBarry Smith 2727985db425SBarry Smith PetscFunctionBegin; 2728e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2729985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2730985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2731ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr); 2732e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2733985db425SBarry Smith for (i=0; i<m; i++) { 2734985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2735985db425SBarry Smith for (j=1; j<n; j++) { 2736ca15aa20SStefano Zampini if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;} 2737985db425SBarry Smith } 2738985db425SBarry Smith } 2739ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr); 2740985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2741985db425SBarry Smith PetscFunctionReturn(0); 2742985db425SBarry Smith } 2743985db425SBarry Smith 2744e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 2745985db425SBarry Smith { 2746985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2747985db425SBarry Smith PetscErrorCode ierr; 2748d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2749985db425SBarry Smith PetscScalar *x; 2750985db425SBarry Smith PetscReal atmp; 2751ca15aa20SStefano Zampini const PetscScalar *aa; 2752985db425SBarry Smith 2753985db425SBarry Smith PetscFunctionBegin; 2754e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2755985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2756985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2757ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr); 2758e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2759985db425SBarry Smith for (i=0; i<m; i++) { 27609189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 2761985db425SBarry Smith for (j=1; j<n; j++) { 2762ca15aa20SStefano Zampini atmp = PetscAbsScalar(aa[i+a->lda*j]); 2763985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 2764985db425SBarry Smith } 2765985db425SBarry Smith } 2766ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr); 2767985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2768985db425SBarry Smith PetscFunctionReturn(0); 2769985db425SBarry Smith } 2770985db425SBarry Smith 2771e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 2772985db425SBarry Smith { 2773985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2774985db425SBarry Smith PetscErrorCode ierr; 2775d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2776985db425SBarry Smith PetscScalar *x; 2777ca15aa20SStefano Zampini const PetscScalar *aa; 2778985db425SBarry Smith 2779985db425SBarry Smith PetscFunctionBegin; 2780e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2781ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr); 2782985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2783985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2784e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2785985db425SBarry Smith for (i=0; i<m; i++) { 2786985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2787985db425SBarry Smith for (j=1; j<n; j++) { 2788ca15aa20SStefano Zampini if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;} 2789985db425SBarry Smith } 2790985db425SBarry Smith } 2791985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2792ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr); 2793985db425SBarry Smith PetscFunctionReturn(0); 2794985db425SBarry Smith } 2795985db425SBarry Smith 2796637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 27978d0534beSBarry Smith { 27988d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 27998d0534beSBarry Smith PetscErrorCode ierr; 28008d0534beSBarry Smith PetscScalar *x; 2801ca15aa20SStefano Zampini const PetscScalar *aa; 28028d0534beSBarry Smith 28038d0534beSBarry Smith PetscFunctionBegin; 2804e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2805ca15aa20SStefano Zampini ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr); 28068d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2807ca15aa20SStefano Zampini ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr); 28088d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2809ca15aa20SStefano Zampini ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr); 28108d0534beSBarry Smith PetscFunctionReturn(0); 28118d0534beSBarry Smith } 28128d0534beSBarry Smith 281352c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms) 28140716a85fSBarry Smith { 28150716a85fSBarry Smith PetscErrorCode ierr; 28160716a85fSBarry Smith PetscInt i,j,m,n; 28171683a169SBarry Smith const PetscScalar *a; 28180716a85fSBarry Smith 28190716a85fSBarry Smith PetscFunctionBegin; 28200716a85fSBarry Smith ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr); 2821580bdb30SBarry Smith ierr = PetscArrayzero(norms,n);CHKERRQ(ierr); 28221683a169SBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 28230716a85fSBarry Smith if (type == NORM_2) { 28240716a85fSBarry Smith for (i=0; i<n; i++) { 28250716a85fSBarry Smith for (j=0; j<m; j++) { 28260716a85fSBarry Smith norms[i] += PetscAbsScalar(a[j]*a[j]); 28270716a85fSBarry Smith } 28280716a85fSBarry Smith a += m; 28290716a85fSBarry Smith } 28300716a85fSBarry Smith } else if (type == NORM_1) { 28310716a85fSBarry Smith for (i=0; i<n; i++) { 28320716a85fSBarry Smith for (j=0; j<m; j++) { 28330716a85fSBarry Smith norms[i] += PetscAbsScalar(a[j]); 28340716a85fSBarry Smith } 28350716a85fSBarry Smith a += m; 28360716a85fSBarry Smith } 28370716a85fSBarry Smith } else if (type == NORM_INFINITY) { 28380716a85fSBarry Smith for (i=0; i<n; i++) { 28390716a85fSBarry Smith for (j=0; j<m; j++) { 28400716a85fSBarry Smith norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]); 28410716a85fSBarry Smith } 28420716a85fSBarry Smith a += m; 28430716a85fSBarry Smith } 2844ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 28451683a169SBarry Smith ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr); 28460716a85fSBarry Smith if (type == NORM_2) { 28478f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 28480716a85fSBarry Smith } 28490716a85fSBarry Smith PetscFunctionReturn(0); 28500716a85fSBarry Smith } 28510716a85fSBarry Smith 285273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_SeqDense(Mat x,PetscRandom rctx) 285373a71a0fSBarry Smith { 285473a71a0fSBarry Smith PetscErrorCode ierr; 285573a71a0fSBarry Smith PetscScalar *a; 2856637a0070SStefano Zampini PetscInt lda,m,n,i,j; 285773a71a0fSBarry Smith 285873a71a0fSBarry Smith PetscFunctionBegin; 285973a71a0fSBarry Smith ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr); 2860637a0070SStefano Zampini ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr); 28618c778c55SBarry Smith ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr); 2862637a0070SStefano Zampini for (j=0; j<n; j++) { 2863637a0070SStefano Zampini for (i=0; i<m; i++) { 2864637a0070SStefano Zampini ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr); 2865637a0070SStefano Zampini } 286673a71a0fSBarry Smith } 28678c778c55SBarry Smith ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr); 286873a71a0fSBarry Smith PetscFunctionReturn(0); 286973a71a0fSBarry Smith } 287073a71a0fSBarry Smith 28713b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool *missing,PetscInt *d) 28723b49f96aSBarry Smith { 28733b49f96aSBarry Smith PetscFunctionBegin; 28743b49f96aSBarry Smith *missing = PETSC_FALSE; 28753b49f96aSBarry Smith PetscFunctionReturn(0); 28763b49f96aSBarry Smith } 287773a71a0fSBarry Smith 2878ca15aa20SStefano Zampini /* vals is not const */ 2879af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals) 288086aefd0dSHong Zhang { 2881ca15aa20SStefano Zampini PetscErrorCode ierr; 288286aefd0dSHong Zhang Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2883ca15aa20SStefano Zampini PetscScalar *v; 288486aefd0dSHong Zhang 288586aefd0dSHong Zhang PetscFunctionBegin; 288686aefd0dSHong Zhang if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2887ca15aa20SStefano Zampini ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 2888ca15aa20SStefano Zampini *vals = v+col*a->lda; 2889ca15aa20SStefano Zampini ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 289086aefd0dSHong Zhang PetscFunctionReturn(0); 289186aefd0dSHong Zhang } 289286aefd0dSHong Zhang 2893af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals) 289486aefd0dSHong Zhang { 289586aefd0dSHong Zhang PetscFunctionBegin; 2896f4259b30SLisandro Dalcin *vals = NULL; /* user cannot accidently use the array later */ 289786aefd0dSHong Zhang PetscFunctionReturn(0); 289886aefd0dSHong Zhang } 2899abc3b08eSStefano Zampini 2900289bc588SBarry Smith /* -------------------------------------------------------------------*/ 2901a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense, 2902905e6a2fSBarry Smith MatGetRow_SeqDense, 2903905e6a2fSBarry Smith MatRestoreRow_SeqDense, 2904905e6a2fSBarry Smith MatMult_SeqDense, 290597304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 29067c922b88SBarry Smith MatMultTranspose_SeqDense, 29077c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 2908f4259b30SLisandro Dalcin NULL, 2909f4259b30SLisandro Dalcin NULL, 2910f4259b30SLisandro Dalcin NULL, 2911f4259b30SLisandro Dalcin /* 10*/ NULL, 2912905e6a2fSBarry Smith MatLUFactor_SeqDense, 2913905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 291441f059aeSBarry Smith MatSOR_SeqDense, 2915ec8511deSBarry Smith MatTranspose_SeqDense, 291697304618SKris Buschelman /* 15*/ MatGetInfo_SeqDense, 2917905e6a2fSBarry Smith MatEqual_SeqDense, 2918905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 2919905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 2920905e6a2fSBarry Smith MatNorm_SeqDense, 2921c0aa2d19SHong Zhang /* 20*/ MatAssemblyBegin_SeqDense, 2922c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 2923905e6a2fSBarry Smith MatSetOption_SeqDense, 2924905e6a2fSBarry Smith MatZeroEntries_SeqDense, 2925d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqDense, 2926f4259b30SLisandro Dalcin NULL, 2927f4259b30SLisandro Dalcin NULL, 2928f4259b30SLisandro Dalcin NULL, 2929f4259b30SLisandro Dalcin NULL, 29304994cf47SJed Brown /* 29*/ MatSetUp_SeqDense, 2931f4259b30SLisandro Dalcin NULL, 2932f4259b30SLisandro Dalcin NULL, 2933f4259b30SLisandro Dalcin NULL, 2934f4259b30SLisandro Dalcin NULL, 2935d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqDense, 2936f4259b30SLisandro Dalcin NULL, 2937f4259b30SLisandro Dalcin NULL, 2938f4259b30SLisandro Dalcin NULL, 2939f4259b30SLisandro Dalcin NULL, 2940d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqDense, 29417dae84e0SHong Zhang MatCreateSubMatrices_SeqDense, 2942f4259b30SLisandro Dalcin NULL, 29434b0e389bSBarry Smith MatGetValues_SeqDense, 2944a5ae1ecdSBarry Smith MatCopy_SeqDense, 2945d519adbfSMatthew Knepley /* 44*/ MatGetRowMax_SeqDense, 2946a5ae1ecdSBarry Smith MatScale_SeqDense, 29477d68702bSBarry Smith MatShift_Basic, 2948f4259b30SLisandro Dalcin NULL, 29493f49a652SStefano Zampini MatZeroRowsColumns_SeqDense, 295073a71a0fSBarry Smith /* 49*/ MatSetRandom_SeqDense, 2951f4259b30SLisandro Dalcin NULL, 2952f4259b30SLisandro Dalcin NULL, 2953f4259b30SLisandro Dalcin NULL, 2954f4259b30SLisandro Dalcin NULL, 2955f4259b30SLisandro Dalcin /* 54*/ NULL, 2956f4259b30SLisandro Dalcin NULL, 2957f4259b30SLisandro Dalcin NULL, 2958f4259b30SLisandro Dalcin NULL, 2959f4259b30SLisandro Dalcin NULL, 2960023c16fcSToby Isaac /* 59*/ MatCreateSubMatrix_SeqDense, 2961e03a110bSBarry Smith MatDestroy_SeqDense, 2962e03a110bSBarry Smith MatView_SeqDense, 2963f4259b30SLisandro Dalcin NULL, 2964f4259b30SLisandro Dalcin NULL, 2965f4259b30SLisandro Dalcin /* 64*/ NULL, 2966f4259b30SLisandro Dalcin NULL, 2967f4259b30SLisandro Dalcin NULL, 2968f4259b30SLisandro Dalcin NULL, 2969f4259b30SLisandro Dalcin NULL, 2970d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqDense, 2971f4259b30SLisandro Dalcin NULL, 2972f4259b30SLisandro Dalcin NULL, 2973f4259b30SLisandro Dalcin NULL, 2974f4259b30SLisandro Dalcin NULL, 2975f4259b30SLisandro Dalcin /* 74*/ NULL, 2976f4259b30SLisandro Dalcin NULL, 2977f4259b30SLisandro Dalcin NULL, 2978f4259b30SLisandro Dalcin NULL, 2979f4259b30SLisandro Dalcin NULL, 2980f4259b30SLisandro Dalcin /* 79*/ NULL, 2981f4259b30SLisandro Dalcin NULL, 2982f4259b30SLisandro Dalcin NULL, 2983f4259b30SLisandro Dalcin NULL, 29845bba2384SShri Abhyankar /* 83*/ MatLoad_SeqDense, 2985637a0070SStefano Zampini MatIsSymmetric_SeqDense, 29861cbb95d3SBarry Smith MatIsHermitian_SeqDense, 2987f4259b30SLisandro Dalcin NULL, 2988f4259b30SLisandro Dalcin NULL, 2989f4259b30SLisandro Dalcin NULL, 2990f4259b30SLisandro Dalcin /* 89*/ NULL, 2991f4259b30SLisandro Dalcin NULL, 2992a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 2993f4259b30SLisandro Dalcin NULL, 2994f4259b30SLisandro Dalcin NULL, 2995f4259b30SLisandro Dalcin /* 94*/ NULL, 2996f4259b30SLisandro Dalcin NULL, 2997f4259b30SLisandro Dalcin NULL, 299869f65d41SStefano Zampini MatMatTransposeMultNumeric_SeqDense_SeqDense, 2999f4259b30SLisandro Dalcin NULL, 30004222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_SeqDense, 3001f4259b30SLisandro Dalcin NULL, 3002f4259b30SLisandro Dalcin NULL, 3003ba337c44SJed Brown MatConjugate_SeqDense, 3004f4259b30SLisandro Dalcin NULL, 3005f4259b30SLisandro Dalcin /*104*/ NULL, 3006ba337c44SJed Brown MatRealPart_SeqDense, 3007ba337c44SJed Brown MatImaginaryPart_SeqDense, 3008f4259b30SLisandro Dalcin NULL, 3009f4259b30SLisandro Dalcin NULL, 3010f4259b30SLisandro Dalcin /*109*/ NULL, 3011f4259b30SLisandro Dalcin NULL, 30128d0534beSBarry Smith MatGetRowMin_SeqDense, 3013aabbc4fbSShri Abhyankar MatGetColumnVector_SeqDense, 30143b49f96aSBarry Smith MatMissingDiagonal_SeqDense, 3015f4259b30SLisandro Dalcin /*114*/ NULL, 3016f4259b30SLisandro Dalcin NULL, 3017f4259b30SLisandro Dalcin NULL, 3018f4259b30SLisandro Dalcin NULL, 3019f4259b30SLisandro Dalcin NULL, 3020f4259b30SLisandro Dalcin /*119*/ NULL, 3021f4259b30SLisandro Dalcin NULL, 3022f4259b30SLisandro Dalcin NULL, 3023f4259b30SLisandro Dalcin NULL, 3024f4259b30SLisandro Dalcin NULL, 3025f4259b30SLisandro Dalcin /*124*/ NULL, 30265df89d91SHong Zhang MatGetColumnNorms_SeqDense, 3027f4259b30SLisandro Dalcin NULL, 3028f4259b30SLisandro Dalcin NULL, 3029f4259b30SLisandro Dalcin NULL, 3030f4259b30SLisandro Dalcin /*129*/ NULL, 3031f4259b30SLisandro Dalcin NULL, 3032f4259b30SLisandro Dalcin NULL, 303375648e8dSHong Zhang MatTransposeMatMultNumeric_SeqDense_SeqDense, 3034f4259b30SLisandro Dalcin NULL, 3035f4259b30SLisandro Dalcin /*134*/ NULL, 3036f4259b30SLisandro Dalcin NULL, 3037f4259b30SLisandro Dalcin NULL, 3038f4259b30SLisandro Dalcin NULL, 3039f4259b30SLisandro Dalcin NULL, 3040f4259b30SLisandro Dalcin /*139*/ NULL, 3041f4259b30SLisandro Dalcin NULL, 3042f4259b30SLisandro Dalcin NULL, 3043f4259b30SLisandro Dalcin NULL, 3044f4259b30SLisandro Dalcin NULL, 30454222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_SeqDense, 3046f4259b30SLisandro Dalcin /*145*/ NULL, 3047f4259b30SLisandro Dalcin NULL, 3048f4259b30SLisandro Dalcin NULL 3049985db425SBarry Smith }; 305090ace30eSBarry Smith 30514b828684SBarry Smith /*@C 3052fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 3053d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 3054d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 3055289bc588SBarry Smith 3056d083f849SBarry Smith Collective 3057db81eaa0SLois Curfman McInnes 305820563c6bSBarry Smith Input Parameters: 3059db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 30600c775827SLois Curfman McInnes . m - number of rows 306118f449edSLois Curfman McInnes . n - number of columns 30620298fd71SBarry Smith - data - optional location of matrix data in column major order. Set data=NULL for PETSc 3063dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 306420563c6bSBarry Smith 306520563c6bSBarry Smith Output Parameter: 306644cd7ae7SLois Curfman McInnes . A - the matrix 306720563c6bSBarry Smith 3068b259b22eSLois Curfman McInnes Notes: 306918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 307018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 30710298fd71SBarry Smith set data=NULL. 307218f449edSLois Curfman McInnes 3073027ccd11SLois Curfman McInnes Level: intermediate 3074027ccd11SLois Curfman McInnes 307569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues() 307620563c6bSBarry Smith @*/ 30777087cfbeSBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 3078289bc588SBarry Smith { 3079dfbe8321SBarry Smith PetscErrorCode ierr; 30803b2fbd54SBarry Smith 30813a40ed3dSBarry Smith PetscFunctionBegin; 3082f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3083f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3084273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 3085273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 3086273d9f13SBarry Smith PetscFunctionReturn(0); 3087273d9f13SBarry Smith } 3088273d9f13SBarry Smith 3089273d9f13SBarry Smith /*@C 3090273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 3091273d9f13SBarry Smith 3092d083f849SBarry Smith Collective 3093273d9f13SBarry Smith 3094273d9f13SBarry Smith Input Parameters: 30951c4f3114SJed Brown + B - the matrix 30960298fd71SBarry Smith - data - the array (or NULL) 3097273d9f13SBarry Smith 3098273d9f13SBarry Smith Notes: 3099273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 3100273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 3101284134d9SBarry Smith need not call this routine. 3102273d9f13SBarry Smith 3103273d9f13SBarry Smith Level: intermediate 3104273d9f13SBarry Smith 3105ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA() 3106867c911aSBarry Smith 3107273d9f13SBarry Smith @*/ 31087087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 3109273d9f13SBarry Smith { 31104ac538c5SBarry Smith PetscErrorCode ierr; 3111a23d5eceSKris Buschelman 3112a23d5eceSKris Buschelman PetscFunctionBegin; 3113d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 31144ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr); 3115a23d5eceSKris Buschelman PetscFunctionReturn(0); 3116a23d5eceSKris Buschelman } 3117a23d5eceSKris Buschelman 31187087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 3119a23d5eceSKris Buschelman { 3120ad16ce7aSStefano Zampini Mat_SeqDense *b = (Mat_SeqDense*)B->data; 3121dfbe8321SBarry Smith PetscErrorCode ierr; 3122273d9f13SBarry Smith 3123273d9f13SBarry Smith PetscFunctionBegin; 3124616b8fbbSStefano Zampini if (b->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 3125273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 3126a868139aSShri Abhyankar 312734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 312834ef9618SShri Abhyankar ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 312934ef9618SShri Abhyankar 3130ad16ce7aSStefano Zampini if (b->lda <= 0) b->lda = B->rmap->n; 313186d161a7SShri Abhyankar 3132ad16ce7aSStefano Zampini ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr); 31339e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 31349e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 3135ad16ce7aSStefano Zampini ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr); 3136ad16ce7aSStefano Zampini ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 31372205254eSKarl Rupp 31389e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 3139273d9f13SBarry Smith } else { /* user-allocated storage */ 31409e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 3141273d9f13SBarry Smith b->v = data; 3142273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 3143273d9f13SBarry Smith } 31440450473dSBarry Smith B->assembled = PETSC_TRUE; 3145273d9f13SBarry Smith PetscFunctionReturn(0); 3146273d9f13SBarry Smith } 3147273d9f13SBarry Smith 314865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 3149cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 31508baccfbdSHong Zhang { 3151d77f618aSHong Zhang Mat mat_elemental; 3152d77f618aSHong Zhang PetscErrorCode ierr; 31531683a169SBarry Smith const PetscScalar *array; 31541683a169SBarry Smith PetscScalar *v_colwise; 3155d77f618aSHong Zhang PetscInt M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols; 3156d77f618aSHong Zhang 31578baccfbdSHong Zhang PetscFunctionBegin; 3158d77f618aSHong Zhang ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr); 31591683a169SBarry Smith ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr); 3160d77f618aSHong Zhang /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */ 3161d77f618aSHong Zhang k = 0; 3162d77f618aSHong Zhang for (j=0; j<N; j++) { 3163d77f618aSHong Zhang cols[j] = j; 3164d77f618aSHong Zhang for (i=0; i<M; i++) { 3165d77f618aSHong Zhang v_colwise[j*M+i] = array[k++]; 3166d77f618aSHong Zhang } 3167d77f618aSHong Zhang } 3168d77f618aSHong Zhang for (i=0; i<M; i++) { 3169d77f618aSHong Zhang rows[i] = i; 3170d77f618aSHong Zhang } 31711683a169SBarry Smith ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr); 3172d77f618aSHong Zhang 3173d77f618aSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 3174d77f618aSHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr); 3175d77f618aSHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 3176d77f618aSHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 3177d77f618aSHong Zhang 3178d77f618aSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 3179d77f618aSHong Zhang ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr); 3180d77f618aSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3181d77f618aSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3182d77f618aSHong Zhang ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr); 3183d77f618aSHong Zhang 3184511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 318528be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 3186d77f618aSHong Zhang } else { 3187d77f618aSHong Zhang *newmat = mat_elemental; 3188d77f618aSHong Zhang } 31898baccfbdSHong Zhang PetscFunctionReturn(0); 31908baccfbdSHong Zhang } 319165b80a83SHong Zhang #endif 31928baccfbdSHong Zhang 319317359960SJose E. Roman PetscErrorCode MatDenseSetLDA_SeqDense(Mat B,PetscInt lda) 31941b807ce4Svictorle { 31951b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 31967422da62SJose E. Roman PetscBool data; 319721a2c019SBarry Smith 31981b807ce4Svictorle PetscFunctionBegin; 31997422da62SJose E. Roman data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE); 32007422da62SJose E. Roman if (!b->user_alloc && data && b->lda!=lda) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage"); 3201e32f2f54SBarry Smith if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n); 32021b807ce4Svictorle b->lda = lda; 32031b807ce4Svictorle PetscFunctionReturn(0); 32041b807ce4Svictorle } 32051b807ce4Svictorle 3206d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3207d528f656SJakub Kruzik { 3208d528f656SJakub Kruzik PetscErrorCode ierr; 3209d528f656SJakub Kruzik PetscMPIInt size; 3210d528f656SJakub Kruzik 3211d528f656SJakub Kruzik PetscFunctionBegin; 3212ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 3213d528f656SJakub Kruzik if (size == 1) { 3214d528f656SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { 3215d528f656SJakub Kruzik ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr); 3216d528f656SJakub Kruzik } else { 3217d528f656SJakub Kruzik ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 3218d528f656SJakub Kruzik } 3219d528f656SJakub Kruzik } else { 3220d528f656SJakub Kruzik ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 3221d528f656SJakub Kruzik } 3222d528f656SJakub Kruzik PetscFunctionReturn(0); 3223d528f656SJakub Kruzik } 3224d528f656SJakub Kruzik 32256947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v) 32266947451fSStefano Zampini { 32276947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32286947451fSStefano Zampini PetscErrorCode ierr; 32296947451fSStefano Zampini 32306947451fSStefano Zampini PetscFunctionBegin; 32315ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 32325ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 32336947451fSStefano Zampini if (!a->cvec) { 32346947451fSStefano Zampini ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr); 3235616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 32366947451fSStefano Zampini } 32376947451fSStefano Zampini a->vecinuse = col + 1; 32386947451fSStefano Zampini ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 32396947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr); 32406947451fSStefano Zampini *v = a->cvec; 32416947451fSStefano Zampini PetscFunctionReturn(0); 32426947451fSStefano Zampini } 32436947451fSStefano Zampini 32446947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v) 32456947451fSStefano Zampini { 32466947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32476947451fSStefano Zampini PetscErrorCode ierr; 32486947451fSStefano Zampini 32496947451fSStefano Zampini PetscFunctionBegin; 32505ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 32516947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 32526947451fSStefano Zampini a->vecinuse = 0; 32536947451fSStefano Zampini ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 32546947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 32556947451fSStefano Zampini *v = NULL; 32566947451fSStefano Zampini PetscFunctionReturn(0); 32576947451fSStefano Zampini } 32586947451fSStefano Zampini 32596947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v) 32606947451fSStefano Zampini { 32616947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32626947451fSStefano Zampini PetscErrorCode ierr; 32636947451fSStefano Zampini 32646947451fSStefano Zampini PetscFunctionBegin; 32655ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 32665ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 32676947451fSStefano Zampini if (!a->cvec) { 32686947451fSStefano Zampini ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr); 3269616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 32706947451fSStefano Zampini } 32716947451fSStefano Zampini a->vecinuse = col + 1; 32726947451fSStefano Zampini ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr); 32736947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr); 32746947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 32756947451fSStefano Zampini *v = a->cvec; 32766947451fSStefano Zampini PetscFunctionReturn(0); 32776947451fSStefano Zampini } 32786947451fSStefano Zampini 32796947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v) 32806947451fSStefano Zampini { 32816947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32826947451fSStefano Zampini PetscErrorCode ierr; 32836947451fSStefano Zampini 32846947451fSStefano Zampini PetscFunctionBegin; 32855ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 32866947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 32876947451fSStefano Zampini a->vecinuse = 0; 32886947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr); 32896947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 32906947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 32916947451fSStefano Zampini *v = NULL; 32926947451fSStefano Zampini PetscFunctionReturn(0); 32936947451fSStefano Zampini } 32946947451fSStefano Zampini 32956947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v) 32966947451fSStefano Zampini { 32976947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 32986947451fSStefano Zampini PetscErrorCode ierr; 32996947451fSStefano Zampini 33006947451fSStefano Zampini PetscFunctionBegin; 33015ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 33025ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 33036947451fSStefano Zampini if (!a->cvec) { 33046947451fSStefano Zampini ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr); 3305616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 33066947451fSStefano Zampini } 33076947451fSStefano Zampini a->vecinuse = col + 1; 33086947451fSStefano Zampini ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 33096947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr); 33106947451fSStefano Zampini *v = a->cvec; 33116947451fSStefano Zampini PetscFunctionReturn(0); 33126947451fSStefano Zampini } 33136947451fSStefano Zampini 33146947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v) 33156947451fSStefano Zampini { 33166947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 33176947451fSStefano Zampini PetscErrorCode ierr; 33186947451fSStefano Zampini 33196947451fSStefano Zampini PetscFunctionBegin; 33205ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 33216947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 33226947451fSStefano Zampini a->vecinuse = 0; 33236947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 33246947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 33256947451fSStefano Zampini *v = NULL; 33266947451fSStefano Zampini PetscFunctionReturn(0); 33276947451fSStefano Zampini } 33286947451fSStefano Zampini 33295ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 33305ea7661aSPierre Jolivet { 33315ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense*)A->data; 33325ea7661aSPierre Jolivet PetscErrorCode ierr; 33335ea7661aSPierre Jolivet 33345ea7661aSPierre Jolivet PetscFunctionBegin; 33355ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 33365ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 33375ea7661aSPierre Jolivet if (a->cmat && cend-cbegin != a->cmat->cmap->N) { 33385ea7661aSPierre Jolivet ierr = MatDestroy(&a->cmat);CHKERRQ(ierr); 33395ea7661aSPierre Jolivet } 33405ea7661aSPierre Jolivet if (!a->cmat) { 3341616b8fbbSStefano Zampini ierr = MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->v + (size_t)cbegin * (size_t)a->lda,&a->cmat);CHKERRQ(ierr); 3342616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 33435ea7661aSPierre Jolivet } else { 3344616b8fbbSStefano Zampini ierr = MatDensePlaceArray(a->cmat,a->v + (size_t)cbegin * (size_t)a->lda);CHKERRQ(ierr); 33455ea7661aSPierre Jolivet } 3346616b8fbbSStefano Zampini ierr = MatDenseSetLDA(a->cmat,a->lda);CHKERRQ(ierr); 33475ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 33485ea7661aSPierre Jolivet *v = a->cmat; 33495ea7661aSPierre Jolivet PetscFunctionReturn(0); 33505ea7661aSPierre Jolivet } 33515ea7661aSPierre Jolivet 33525ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v) 33535ea7661aSPierre Jolivet { 33545ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense*)A->data; 33555ea7661aSPierre Jolivet PetscErrorCode ierr; 33565ea7661aSPierre Jolivet 33575ea7661aSPierre Jolivet PetscFunctionBegin; 33585ea7661aSPierre Jolivet if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 33595ea7661aSPierre Jolivet if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix"); 3360616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 33615ea7661aSPierre Jolivet a->matinuse = 0; 33625ea7661aSPierre Jolivet ierr = MatDenseResetArray(a->cmat);CHKERRQ(ierr); 33635ea7661aSPierre Jolivet *v = NULL; 33645ea7661aSPierre Jolivet PetscFunctionReturn(0); 33655ea7661aSPierre Jolivet } 33665ea7661aSPierre Jolivet 33670bad9183SKris Buschelman /*MC 3368fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 33690bad9183SKris Buschelman 33700bad9183SKris Buschelman Options Database Keys: 33710bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 33720bad9183SKris Buschelman 33730bad9183SKris Buschelman Level: beginner 33740bad9183SKris Buschelman 337589665df3SBarry Smith .seealso: MatCreateSeqDense() 337689665df3SBarry Smith 33770bad9183SKris Buschelman M*/ 3378ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B) 3379273d9f13SBarry Smith { 3380273d9f13SBarry Smith Mat_SeqDense *b; 3381dfbe8321SBarry Smith PetscErrorCode ierr; 33827c334f02SBarry Smith PetscMPIInt size; 3383273d9f13SBarry Smith 3384273d9f13SBarry Smith PetscFunctionBegin; 3385ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 3386e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 338755659b69SBarry Smith 3388b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 3389549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 339044cd7ae7SLois Curfman McInnes B->data = (void*)b; 339118f449edSLois Curfman McInnes 3392273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 33934e220ebcSLois Curfman McInnes 33944905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense);CHKERRQ(ierr); 33954905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr); 33964905a7bcSToby Isaac ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense);CHKERRQ(ierr); 339749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr); 3398ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr); 3399bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr); 34008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr); 3401d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr); 3402d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr); 3403d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr); 34048572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr); 3405715b7558SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr); 34066947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr); 34076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr); 3408bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr); 34098baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 34108baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr); 34118baccfbdSHong Zhang #endif 3412d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 3413d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 3414d24d4204SJose E. Roman #endif 34152bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 34162bf066beSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr); 34174222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr); 34184222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr); 3419637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr); 34202bf066beSStefano Zampini #endif 3421bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 34224222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr); 34234222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr); 34244222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr); 34254222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr); 342696e6d5c4SRichard Tran Mills 3427af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr); 3428af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr); 34296947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr); 34306947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr); 34316947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr); 34326947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr); 34336947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr); 34346947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr); 34355ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense);CHKERRQ(ierr); 34365ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense);CHKERRQ(ierr); 343717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 34383a40ed3dSBarry Smith PetscFunctionReturn(0); 3439289bc588SBarry Smith } 344086aefd0dSHong Zhang 344186aefd0dSHong Zhang /*@C 3442af53bab2SHong Zhang MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding. 344386aefd0dSHong Zhang 344486aefd0dSHong Zhang Not Collective 344586aefd0dSHong Zhang 34465ea7661aSPierre Jolivet Input Parameters: 344786aefd0dSHong Zhang + mat - a MATSEQDENSE or MATMPIDENSE matrix 344886aefd0dSHong Zhang - col - column index 344986aefd0dSHong Zhang 345086aefd0dSHong Zhang Output Parameter: 345186aefd0dSHong Zhang . vals - pointer to the data 345286aefd0dSHong Zhang 345386aefd0dSHong Zhang Level: intermediate 345486aefd0dSHong Zhang 345586aefd0dSHong Zhang .seealso: MatDenseRestoreColumn() 345686aefd0dSHong Zhang @*/ 345786aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals) 345886aefd0dSHong Zhang { 345986aefd0dSHong Zhang PetscErrorCode ierr; 346086aefd0dSHong Zhang 346186aefd0dSHong Zhang PetscFunctionBegin; 3462d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 3463d5ea218eSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 3464d5ea218eSStefano Zampini PetscValidPointer(vals,3); 346586aefd0dSHong Zhang ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr); 346686aefd0dSHong Zhang PetscFunctionReturn(0); 346786aefd0dSHong Zhang } 346886aefd0dSHong Zhang 346986aefd0dSHong Zhang /*@C 347086aefd0dSHong Zhang MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn(). 347186aefd0dSHong Zhang 347286aefd0dSHong Zhang Not Collective 347386aefd0dSHong Zhang 347486aefd0dSHong Zhang Input Parameter: 347586aefd0dSHong Zhang . mat - a MATSEQDENSE or MATMPIDENSE matrix 347686aefd0dSHong Zhang 347786aefd0dSHong Zhang Output Parameter: 347886aefd0dSHong Zhang . vals - pointer to the data 347986aefd0dSHong Zhang 348086aefd0dSHong Zhang Level: intermediate 348186aefd0dSHong Zhang 348286aefd0dSHong Zhang .seealso: MatDenseGetColumn() 348386aefd0dSHong Zhang @*/ 348486aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals) 348586aefd0dSHong Zhang { 348686aefd0dSHong Zhang PetscErrorCode ierr; 348786aefd0dSHong Zhang 348886aefd0dSHong Zhang PetscFunctionBegin; 3489d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 3490d5ea218eSStefano Zampini PetscValidPointer(vals,2); 349186aefd0dSHong Zhang ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr); 349286aefd0dSHong Zhang PetscFunctionReturn(0); 349386aefd0dSHong Zhang } 34946947451fSStefano Zampini 34956947451fSStefano Zampini /*@C 34966947451fSStefano Zampini MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec. 34976947451fSStefano Zampini 34986947451fSStefano Zampini Collective 34996947451fSStefano Zampini 35005ea7661aSPierre Jolivet Input Parameters: 35016947451fSStefano Zampini + mat - the Mat object 35026947451fSStefano Zampini - col - the column index 35036947451fSStefano Zampini 35046947451fSStefano Zampini Output Parameter: 35056947451fSStefano Zampini . v - the vector 35066947451fSStefano Zampini 35076947451fSStefano Zampini Notes: 35086947451fSStefano Zampini The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed. 35096947451fSStefano Zampini Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access. 35106947451fSStefano Zampini 35116947451fSStefano Zampini Level: intermediate 35126947451fSStefano Zampini 35136947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite() 35146947451fSStefano Zampini @*/ 35156947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v) 35166947451fSStefano Zampini { 35176947451fSStefano Zampini PetscErrorCode ierr; 35186947451fSStefano Zampini 35196947451fSStefano Zampini PetscFunctionBegin; 35206947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35216947451fSStefano Zampini PetscValidType(A,1); 35226947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 35236947451fSStefano Zampini PetscValidPointer(v,3); 35246947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 35256947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 35266947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 35276947451fSStefano Zampini PetscFunctionReturn(0); 35286947451fSStefano Zampini } 35296947451fSStefano Zampini 35306947451fSStefano Zampini /*@C 35316947451fSStefano Zampini MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec(). 35326947451fSStefano Zampini 35336947451fSStefano Zampini Collective 35346947451fSStefano Zampini 35355ea7661aSPierre Jolivet Input Parameters: 35366947451fSStefano Zampini + mat - the Mat object 35376947451fSStefano Zampini . col - the column index 35386947451fSStefano Zampini - v - the Vec object 35396947451fSStefano Zampini 35406947451fSStefano Zampini Level: intermediate 35416947451fSStefano Zampini 35426947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite() 35436947451fSStefano Zampini @*/ 35446947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v) 35456947451fSStefano Zampini { 35466947451fSStefano Zampini PetscErrorCode ierr; 35476947451fSStefano Zampini 35486947451fSStefano Zampini PetscFunctionBegin; 35496947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35506947451fSStefano Zampini PetscValidType(A,1); 35516947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 35526947451fSStefano Zampini PetscValidPointer(v,3); 35536947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 35546947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 35556947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 35566947451fSStefano Zampini PetscFunctionReturn(0); 35576947451fSStefano Zampini } 35586947451fSStefano Zampini 35596947451fSStefano Zampini /*@C 35606947451fSStefano Zampini MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec. 35616947451fSStefano Zampini 35626947451fSStefano Zampini Collective 35636947451fSStefano Zampini 35645ea7661aSPierre Jolivet Input Parameters: 35656947451fSStefano Zampini + mat - the Mat object 35666947451fSStefano Zampini - col - the column index 35676947451fSStefano Zampini 35686947451fSStefano Zampini Output Parameter: 35696947451fSStefano Zampini . v - the vector 35706947451fSStefano Zampini 35716947451fSStefano Zampini Notes: 35726947451fSStefano Zampini The vector is owned by PETSc and users cannot modify it. 35736947451fSStefano Zampini Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed. 35746947451fSStefano Zampini Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access. 35756947451fSStefano Zampini 35766947451fSStefano Zampini Level: intermediate 35776947451fSStefano Zampini 35786947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite() 35796947451fSStefano Zampini @*/ 35806947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v) 35816947451fSStefano Zampini { 35826947451fSStefano Zampini PetscErrorCode ierr; 35836947451fSStefano Zampini 35846947451fSStefano Zampini PetscFunctionBegin; 35856947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 35866947451fSStefano Zampini PetscValidType(A,1); 35876947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 35886947451fSStefano Zampini PetscValidPointer(v,3); 35896947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 35906947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 35916947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 35926947451fSStefano Zampini PetscFunctionReturn(0); 35936947451fSStefano Zampini } 35946947451fSStefano Zampini 35956947451fSStefano Zampini /*@C 35966947451fSStefano Zampini MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead(). 35976947451fSStefano Zampini 35986947451fSStefano Zampini Collective 35996947451fSStefano Zampini 36005ea7661aSPierre Jolivet Input Parameters: 36016947451fSStefano Zampini + mat - the Mat object 36026947451fSStefano Zampini . col - the column index 36036947451fSStefano Zampini - v - the Vec object 36046947451fSStefano Zampini 36056947451fSStefano Zampini Level: intermediate 36066947451fSStefano Zampini 36076947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite() 36086947451fSStefano Zampini @*/ 36096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v) 36106947451fSStefano Zampini { 36116947451fSStefano Zampini PetscErrorCode ierr; 36126947451fSStefano Zampini 36136947451fSStefano Zampini PetscFunctionBegin; 36146947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 36156947451fSStefano Zampini PetscValidType(A,1); 36166947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 36176947451fSStefano Zampini PetscValidPointer(v,3); 36186947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 36196947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 36206947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 36216947451fSStefano Zampini PetscFunctionReturn(0); 36226947451fSStefano Zampini } 36236947451fSStefano Zampini 36246947451fSStefano Zampini /*@C 36256947451fSStefano Zampini MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec. 36266947451fSStefano Zampini 36276947451fSStefano Zampini Collective 36286947451fSStefano Zampini 36295ea7661aSPierre Jolivet Input Parameters: 36306947451fSStefano Zampini + mat - the Mat object 36316947451fSStefano Zampini - col - the column index 36326947451fSStefano Zampini 36336947451fSStefano Zampini Output Parameter: 36346947451fSStefano Zampini . v - the vector 36356947451fSStefano Zampini 36366947451fSStefano Zampini Notes: 36376947451fSStefano Zampini The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed. 36386947451fSStefano Zampini Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access. 36396947451fSStefano Zampini 36406947451fSStefano Zampini Level: intermediate 36416947451fSStefano Zampini 36426947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite() 36436947451fSStefano Zampini @*/ 36446947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v) 36456947451fSStefano Zampini { 36466947451fSStefano Zampini PetscErrorCode ierr; 36476947451fSStefano Zampini 36486947451fSStefano Zampini PetscFunctionBegin; 36496947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 36506947451fSStefano Zampini PetscValidType(A,1); 36516947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 36526947451fSStefano Zampini PetscValidPointer(v,3); 36536947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 36546947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 36556947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 36566947451fSStefano Zampini PetscFunctionReturn(0); 36576947451fSStefano Zampini } 36586947451fSStefano Zampini 36596947451fSStefano Zampini /*@C 36606947451fSStefano Zampini MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite(). 36616947451fSStefano Zampini 36626947451fSStefano Zampini Collective 36636947451fSStefano Zampini 36645ea7661aSPierre Jolivet Input Parameters: 36656947451fSStefano Zampini + mat - the Mat object 36666947451fSStefano Zampini . col - the column index 36676947451fSStefano Zampini - v - the Vec object 36686947451fSStefano Zampini 36696947451fSStefano Zampini Level: intermediate 36706947451fSStefano Zampini 36716947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead() 36726947451fSStefano Zampini @*/ 36736947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v) 36746947451fSStefano Zampini { 36756947451fSStefano Zampini PetscErrorCode ierr; 36766947451fSStefano Zampini 36776947451fSStefano Zampini PetscFunctionBegin; 36786947451fSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 36796947451fSStefano Zampini PetscValidType(A,1); 36806947451fSStefano Zampini PetscValidLogicalCollectiveInt(A,col,2); 36816947451fSStefano Zampini PetscValidPointer(v,3); 36826947451fSStefano Zampini if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 36836947451fSStefano Zampini if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N); 36846947451fSStefano Zampini ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr); 36856947451fSStefano Zampini PetscFunctionReturn(0); 36866947451fSStefano Zampini } 36875ea7661aSPierre Jolivet 36885ea7661aSPierre Jolivet /*@C 36895ea7661aSPierre Jolivet MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat. 36905ea7661aSPierre Jolivet 36915ea7661aSPierre Jolivet Collective 36925ea7661aSPierre Jolivet 36935ea7661aSPierre Jolivet Input Parameters: 36945ea7661aSPierre Jolivet + mat - the Mat object 36955ea7661aSPierre Jolivet . cbegin - the first index in the block 36965ea7661aSPierre Jolivet - cend - the last index in the block 36975ea7661aSPierre Jolivet 36985ea7661aSPierre Jolivet Output Parameter: 36995ea7661aSPierre Jolivet . v - the matrix 37005ea7661aSPierre Jolivet 37015ea7661aSPierre Jolivet Notes: 37025ea7661aSPierre Jolivet The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed. 37035ea7661aSPierre Jolivet 37045ea7661aSPierre Jolivet Level: intermediate 37055ea7661aSPierre Jolivet 37065ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseRestoreSubMatrix() 37075ea7661aSPierre Jolivet @*/ 37085ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 37095ea7661aSPierre Jolivet { 37105ea7661aSPierre Jolivet PetscErrorCode ierr; 37115ea7661aSPierre Jolivet 37125ea7661aSPierre Jolivet PetscFunctionBegin; 37135ea7661aSPierre Jolivet PetscValidHeaderSpecific(A,MAT_CLASSID,1); 37145ea7661aSPierre Jolivet PetscValidType(A,1); 37155ea7661aSPierre Jolivet PetscValidLogicalCollectiveInt(A,cbegin,2); 37165ea7661aSPierre Jolivet PetscValidLogicalCollectiveInt(A,cend,3); 37175ea7661aSPierre Jolivet PetscValidPointer(v,4); 37185ea7661aSPierre Jolivet if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated"); 37195ea7661aSPierre Jolivet if (cbegin < 0 || cbegin > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %D, should be in [0,%D)",cbegin,A->cmap->N); 3720616b8fbbSStefano Zampini if (cend < cbegin || cend > A->cmap->N) SETERRQ3(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %D, should be in [%D,%D)",cend,cbegin,A->cmap->N); 37215ea7661aSPierre Jolivet ierr = PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v));CHKERRQ(ierr); 37225ea7661aSPierre Jolivet PetscFunctionReturn(0); 37235ea7661aSPierre Jolivet } 37245ea7661aSPierre Jolivet 37255ea7661aSPierre Jolivet /*@C 37265ea7661aSPierre Jolivet MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix(). 37275ea7661aSPierre Jolivet 37285ea7661aSPierre Jolivet Collective 37295ea7661aSPierre Jolivet 37305ea7661aSPierre Jolivet Input Parameters: 37315ea7661aSPierre Jolivet + mat - the Mat object 37325ea7661aSPierre Jolivet - v - the Mat object 37335ea7661aSPierre Jolivet 37345ea7661aSPierre Jolivet Level: intermediate 37355ea7661aSPierre Jolivet 37365ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseGetSubMatrix() 37375ea7661aSPierre Jolivet @*/ 37385ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v) 37395ea7661aSPierre Jolivet { 37405ea7661aSPierre Jolivet PetscErrorCode ierr; 37415ea7661aSPierre Jolivet 37425ea7661aSPierre Jolivet PetscFunctionBegin; 37435ea7661aSPierre Jolivet PetscValidHeaderSpecific(A,MAT_CLASSID,1); 37445ea7661aSPierre Jolivet PetscValidType(A,1); 37455ea7661aSPierre Jolivet PetscValidPointer(v,2); 37465ea7661aSPierre Jolivet ierr = PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v));CHKERRQ(ierr); 37475ea7661aSPierre Jolivet PetscFunctionReturn(0); 37485ea7661aSPierre Jolivet } 3749