xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 6718818e67c4802797f2feae43fc3d52878b6955)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
16ca15aa20SStefano Zampini   PetscErrorCode ierr;
178c178816SStefano Zampini 
188c178816SStefano Zampini   PetscFunctionBegin;
198c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
20ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
218c178816SStefano Zampini   if (!hermitian) {
228c178816SStefano Zampini     for (k=0;k<n;k++) {
238c178816SStefano Zampini       for (j=k;j<n;j++) {
24ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
258c178816SStefano Zampini       }
268c178816SStefano Zampini     }
278c178816SStefano Zampini   } else {
288c178816SStefano Zampini     for (k=0;k<n;k++) {
298c178816SStefano Zampini       for (j=k;j<n;j++) {
30ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
318c178816SStefano Zampini       }
328c178816SStefano Zampini     }
338c178816SStefano Zampini   }
34ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
358c178816SStefano Zampini   PetscFunctionReturn(0);
368c178816SStefano Zampini }
378c178816SStefano Zampini 
3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
398c178816SStefano Zampini {
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
5400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
558c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
5600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
57ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
588c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
598c178816SStefano Zampini     if (A->spd) {
6000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
618c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
6200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
638c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
658c178816SStefano Zampini     } else if (A->hermitian) {
668c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
678c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
6800121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
698c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7000121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
728c178816SStefano Zampini #endif
738c178816SStefano Zampini     } else { /* symmetric case */
748c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
758c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
7600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
778c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
798c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
808c178816SStefano Zampini     }
818c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
82ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
838c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
848c178816SStefano Zampini 
858c178816SStefano Zampini   A->ops->solve             = NULL;
868c178816SStefano Zampini   A->ops->matsolve          = NULL;
878c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
888c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
898c178816SStefano Zampini   A->ops->solveadd          = NULL;
908c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
918c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
928c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
938c178816SStefano Zampini   PetscFunctionReturn(0);
948c178816SStefano Zampini }
958c178816SStefano Zampini 
963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
973f49a652SStefano Zampini {
983f49a652SStefano Zampini   PetscErrorCode    ierr;
993f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1003f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
101ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
1023f49a652SStefano Zampini   const PetscScalar *xx;
1033f49a652SStefano Zampini 
1043f49a652SStefano Zampini   PetscFunctionBegin;
10576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1063f49a652SStefano Zampini     for (i=0; i<N; i++) {
1073f49a652SStefano Zampini       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1083f49a652SStefano Zampini       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1093f49a652SStefano Zampini       if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1103f49a652SStefano Zampini     }
11176bd3646SJed Brown   }
112ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1133f49a652SStefano Zampini 
1143f49a652SStefano Zampini   /* fix right hand side if needed */
1153f49a652SStefano Zampini   if (x && b) {
1166c4d906cSStefano Zampini     Vec xt;
1176c4d906cSStefano Zampini 
1186c4d906cSStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1196c4d906cSStefano Zampini     ierr = VecDuplicate(x,&xt);CHKERRQ(ierr);
1206c4d906cSStefano Zampini     ierr = VecCopy(x,xt);CHKERRQ(ierr);
1216c4d906cSStefano Zampini     ierr = VecScale(xt,-1.0);CHKERRQ(ierr);
1226c4d906cSStefano Zampini     ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr);
1236c4d906cSStefano Zampini     ierr = VecDestroy(&xt);CHKERRQ(ierr);
1243f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1253f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1263f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1273f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1283f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini 
131ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1323f49a652SStefano Zampini   for (i=0; i<N; i++) {
133ca15aa20SStefano Zampini     slot = v + rows[i]*m;
134580bdb30SBarry Smith     ierr = PetscArrayzero(slot,r);CHKERRQ(ierr);
1353f49a652SStefano Zampini   }
1363f49a652SStefano Zampini   for (i=0; i<N; i++) {
137ca15aa20SStefano Zampini     slot = v + rows[i];
1383f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1393f49a652SStefano Zampini   }
1403f49a652SStefano Zampini   if (diag != 0.0) {
1413f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1423f49a652SStefano Zampini     for (i=0; i<N; i++) {
143ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1443f49a652SStefano Zampini       *slot = diag;
1453f49a652SStefano Zampini     }
1463f49a652SStefano Zampini   }
147ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
1483f49a652SStefano Zampini   PetscFunctionReturn(0);
1493f49a652SStefano Zampini }
1503f49a652SStefano Zampini 
151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
152abc3b08eSStefano Zampini {
153abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
154abc3b08eSStefano Zampini   PetscErrorCode ierr;
155abc3b08eSStefano Zampini 
156abc3b08eSStefano Zampini   PetscFunctionBegin;
157ca15aa20SStefano Zampini   if (c->ptapwork) {
158ca15aa20SStefano Zampini     ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr);
159ca15aa20SStefano Zampini     ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr);
1604222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
161abc3b08eSStefano Zampini   PetscFunctionReturn(0);
162abc3b08eSStefano Zampini }
163abc3b08eSStefano Zampini 
1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
165abc3b08eSStefano Zampini {
166abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1677a3c3d58SStefano Zampini   PetscBool      cisdense;
168abc3b08eSStefano Zampini   PetscErrorCode ierr;
169abc3b08eSStefano Zampini 
170abc3b08eSStefano Zampini   PetscFunctionBegin;
1714222ddf1SHong Zhang   ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr);
1727a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
1737a3c3d58SStefano Zampini   if (!cisdense) {
1747a3c3d58SStefano Zampini     PetscBool flg;
1757a3c3d58SStefano Zampini 
1767a3c3d58SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
1774222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
1787a3c3d58SStefano Zampini   }
1797a3c3d58SStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
1804222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
181ca15aa20SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr);
182ca15aa20SStefano Zampini   ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr);
1837a3c3d58SStefano Zampini   ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr);
1847a3c3d58SStefano Zampini   ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr);
185abc3b08eSStefano Zampini   PetscFunctionReturn(0);
186abc3b08eSStefano Zampini }
187abc3b08eSStefano Zampini 
188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
189b49cda9fSStefano Zampini {
190a13144ffSStefano Zampini   Mat            B = NULL;
191b49cda9fSStefano Zampini   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
192b49cda9fSStefano Zampini   Mat_SeqDense   *b;
193b49cda9fSStefano Zampini   PetscErrorCode ierr;
194b49cda9fSStefano Zampini   PetscInt       *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
195b49cda9fSStefano Zampini   MatScalar      *av=a->a;
196a13144ffSStefano Zampini   PetscBool      isseqdense;
197b49cda9fSStefano Zampini 
198b49cda9fSStefano Zampini   PetscFunctionBegin;
199a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
200a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
201a32993e3SJed Brown     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
202a13144ffSStefano Zampini   }
203a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
204b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
205b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
206b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
207b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
208b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
209a13144ffSStefano Zampini   } else {
210a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
211580bdb30SBarry Smith     ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr);
212a13144ffSStefano Zampini   }
213b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
214b49cda9fSStefano Zampini     PetscInt j;
215b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
216b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
217b49cda9fSStefano Zampini       aj++;
218b49cda9fSStefano Zampini       av++;
219b49cda9fSStefano Zampini     }
220b49cda9fSStefano Zampini     ai++;
221b49cda9fSStefano Zampini   }
222b49cda9fSStefano Zampini 
223511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
224a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
225a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
227b49cda9fSStefano Zampini   } else {
228a13144ffSStefano Zampini     if (B) *newmat = B;
229a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
230a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231b49cda9fSStefano Zampini   }
232b49cda9fSStefano Zampini   PetscFunctionReturn(0);
233b49cda9fSStefano Zampini }
234b49cda9fSStefano Zampini 
235cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2366a63e612SBarry Smith {
2376a63e612SBarry Smith   Mat            B;
2386a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2396a63e612SBarry Smith   PetscErrorCode ierr;
2409399e1b8SMatthew G. Knepley   PetscInt       i, j;
2419399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2429399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2436a63e612SBarry Smith 
2446a63e612SBarry Smith   PetscFunctionBegin;
245ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2466a63e612SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2476a63e612SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2489399e1b8SMatthew G. Knepley   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2499399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2509399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) ++nnz[i];
2516a63e612SBarry Smith     aa += a->lda;
2526a63e612SBarry Smith   }
2539399e1b8SMatthew G. Knepley   ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2549399e1b8SMatthew G. Knepley   aa = a->v;
2559399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2569399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2579399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) {rows[numRows] = i; vals[numRows++] = aa[i];}
2589399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2599399e1b8SMatthew G. Knepley     aa  += a->lda;
2609399e1b8SMatthew G. Knepley   }
2619399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2626a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2636a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2646a63e612SBarry Smith 
265511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
26628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2676a63e612SBarry Smith   } else {
2686a63e612SBarry Smith     *newmat = B;
2696a63e612SBarry Smith   }
2706a63e612SBarry Smith   PetscFunctionReturn(0);
2716a63e612SBarry Smith }
2726a63e612SBarry Smith 
273ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2741987afe7SBarry Smith {
2751987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
276ca15aa20SStefano Zampini   const PetscScalar *xv;
277ca15aa20SStefano Zampini   PetscScalar       *yv;
2780805154bSBarry Smith   PetscBLASInt      N,m,ldax,lday,one = 1;
279efee365bSSatish Balay   PetscErrorCode    ierr;
2803a40ed3dSBarry Smith 
2813a40ed3dSBarry Smith   PetscFunctionBegin;
282ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr);
283ca15aa20SStefano Zampini   ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr);
284c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
285c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
286c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
287c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
288a5ce6ee0Svictorle   if (ldax>m || lday>m) {
289ca15aa20SStefano Zampini     PetscInt j;
290ca15aa20SStefano Zampini 
291d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
292ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
293a5ce6ee0Svictorle     }
294a5ce6ee0Svictorle   } else {
295ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
296a5ce6ee0Svictorle   }
297ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr);
298ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr);
2990450473dSBarry Smith   ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr);
3003a40ed3dSBarry Smith   PetscFunctionReturn(0);
3011987afe7SBarry Smith }
3021987afe7SBarry Smith 
303e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
304289bc588SBarry Smith {
305ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3063a40ed3dSBarry Smith 
3073a40ed3dSBarry Smith   PetscFunctionBegin;
3084e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
309ca15aa20SStefano Zampini   info->nz_allocated      = N;
310ca15aa20SStefano Zampini   info->nz_used           = N;
311ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
312ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3134e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3147adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3154e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3164e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3174e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
319289bc588SBarry Smith }
320289bc588SBarry Smith 
321637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
32280cd9d93SLois Curfman McInnes {
323273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
324ca15aa20SStefano Zampini   PetscScalar    *v;
325efee365bSSatish Balay   PetscErrorCode ierr;
326c5df96a5SBarry Smith   PetscBLASInt   one = 1,j,nz,lda;
32780cd9d93SLois Curfman McInnes 
3283a40ed3dSBarry Smith   PetscFunctionBegin;
329ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
330c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
331d0f46423SBarry Smith   if (lda>A->rmap->n) {
332c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
333d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
334ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
335a5ce6ee0Svictorle     }
336a5ce6ee0Svictorle   } else {
337c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
338ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
339a5ce6ee0Svictorle   }
340efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
341ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
3423a40ed3dSBarry Smith   PetscFunctionReturn(0);
34380cd9d93SLois Curfman McInnes }
34480cd9d93SLois Curfman McInnes 
345e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3461cbb95d3SBarry Smith {
3471cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
348ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
349ca15aa20SStefano Zampini   const PetscScalar *v;
350ca15aa20SStefano Zampini   PetscErrorCode    ierr;
3511cbb95d3SBarry Smith 
3521cbb95d3SBarry Smith   PetscFunctionBegin;
3531cbb95d3SBarry Smith   *fl = PETSC_FALSE;
354d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
355ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
3561cbb95d3SBarry Smith   for (i=0; i<m; i++) {
357ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
358637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
359637a0070SStefano Zampini         goto restore;
3601cbb95d3SBarry Smith       }
3611cbb95d3SBarry Smith     }
362637a0070SStefano Zampini   }
3631cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
364637a0070SStefano Zampini restore:
365637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
366637a0070SStefano Zampini   PetscFunctionReturn(0);
367637a0070SStefano Zampini }
368637a0070SStefano Zampini 
369637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
370637a0070SStefano Zampini {
371637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
372637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
373637a0070SStefano Zampini   const PetscScalar *v;
374637a0070SStefano Zampini   PetscErrorCode    ierr;
375637a0070SStefano Zampini 
376637a0070SStefano Zampini   PetscFunctionBegin;
377637a0070SStefano Zampini   *fl = PETSC_FALSE;
378637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
379637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
380637a0070SStefano Zampini   for (i=0; i<m; i++) {
381637a0070SStefano Zampini     for (j=i; j<m; j++) {
382637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
383637a0070SStefano Zampini         goto restore;
384637a0070SStefano Zampini       }
385637a0070SStefano Zampini     }
386637a0070SStefano Zampini   }
387637a0070SStefano Zampini   *fl  = PETSC_TRUE;
388637a0070SStefano Zampini restore:
389637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
3901cbb95d3SBarry Smith   PetscFunctionReturn(0);
3911cbb95d3SBarry Smith }
3921cbb95d3SBarry Smith 
393ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
394b24902e0SBarry Smith {
395ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
396b24902e0SBarry Smith   PetscErrorCode ierr;
39723fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
398b24902e0SBarry Smith 
399b24902e0SBarry Smith   PetscFunctionBegin;
400aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
401aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
40223fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
40323fc5dcaSStefano Zampini     ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr);
40423fc5dcaSStefano Zampini   }
4050298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
406b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
407ca15aa20SStefano Zampini     const PetscScalar *av;
408ca15aa20SStefano Zampini     PetscScalar       *v;
409ca15aa20SStefano Zampini 
410ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
411ca15aa20SStefano Zampini     ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr);
41223fc5dcaSStefano Zampini     ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr);
413d0f46423SBarry Smith     m    = A->rmap->n;
41423fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
415d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
41623fc5dcaSStefano Zampini         ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr);
417b24902e0SBarry Smith       }
418b24902e0SBarry Smith     } else {
419ca15aa20SStefano Zampini       ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
420b24902e0SBarry Smith     }
421ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr);
422ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
423b24902e0SBarry Smith   }
424b24902e0SBarry Smith   PetscFunctionReturn(0);
425b24902e0SBarry Smith }
426b24902e0SBarry Smith 
427ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
42802cad45dSBarry Smith {
4296849ba73SBarry Smith   PetscErrorCode ierr;
43002cad45dSBarry Smith 
4313a40ed3dSBarry Smith   PetscFunctionBegin;
432ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
433d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
4345c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
435719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
436b24902e0SBarry Smith   PetscFunctionReturn(0);
437b24902e0SBarry Smith }
438b24902e0SBarry Smith 
439e0877f53SBarry Smith static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
440289bc588SBarry Smith {
4414482741eSBarry Smith   MatFactorInfo  info;
442a093e273SMatthew Knepley   PetscErrorCode ierr;
4433a40ed3dSBarry Smith 
4443a40ed3dSBarry Smith   PetscFunctionBegin;
445c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
446ca15aa20SStefano Zampini   ierr = (*fact->ops->lufactor)(fact,0,0,&info);CHKERRQ(ierr);
4473a40ed3dSBarry Smith   PetscFunctionReturn(0);
448289bc588SBarry Smith }
4496ee01492SSatish Balay 
450e0877f53SBarry Smith static PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy)
451289bc588SBarry Smith {
452c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
4536849ba73SBarry Smith   PetscErrorCode    ierr;
454f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
455f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
456c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
45767e560aaSBarry Smith 
4583a40ed3dSBarry Smith   PetscFunctionBegin;
459c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
460f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
4611ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
462580bdb30SBarry Smith   ierr = PetscArraycpy(y,x,A->rmap->n);CHKERRQ(ierr);
463d5f3da31SBarry Smith   if (A->factortype == MAT_FACTOR_LU) {
46400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4658b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
46600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
467e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
468d5f3da31SBarry Smith   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
469a49dc2a2SStefano Zampini     if (A->spd) {
47000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4718b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
47200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
473e32f2f54SBarry Smith       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
474a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
475a49dc2a2SStefano Zampini     } else if (A->hermitian) {
47600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
477a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
47800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
479a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
480a49dc2a2SStefano Zampini #endif
481a49dc2a2SStefano Zampini     } else { /* symmetric case */
48200121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
483a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
48400121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
485a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
486a49dc2a2SStefano Zampini     }
4872205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
488f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
4891ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
490dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
4913a40ed3dSBarry Smith   PetscFunctionReturn(0);
492289bc588SBarry Smith }
4936ee01492SSatish Balay 
494e0877f53SBarry Smith static PetscErrorCode MatMatSolve_SeqDense(Mat A,Mat B,Mat X)
49585e2c93fSHong Zhang {
49685e2c93fSHong Zhang   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
49785e2c93fSHong Zhang   PetscErrorCode    ierr;
4981683a169SBarry Smith   const PetscScalar *b;
4991683a169SBarry Smith   PetscScalar       *x;
500efb80c78SLisandro Dalcin   PetscInt          n;
501783b601eSJed Brown   PetscBLASInt      nrhs,info,m;
50285e2c93fSHong Zhang 
50385e2c93fSHong Zhang   PetscFunctionBegin;
504c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
5050298fd71SBarry Smith   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
506c5df96a5SBarry Smith   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
5071683a169SBarry Smith   ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
5088c778c55SBarry Smith   ierr = MatDenseGetArray(X,&x);CHKERRQ(ierr);
50985e2c93fSHong Zhang 
510580bdb30SBarry Smith   ierr = PetscArraycpy(x,b,m*nrhs);CHKERRQ(ierr);
51185e2c93fSHong Zhang 
51285e2c93fSHong Zhang   if (A->factortype == MAT_FACTOR_LU) {
51300121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5148b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
51500121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
51685e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
51785e2c93fSHong Zhang   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
518a49dc2a2SStefano Zampini     if (A->spd) {
51900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5208b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
52100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
52285e2c93fSHong Zhang       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
523a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
524a49dc2a2SStefano Zampini     } else if (A->hermitian) {
52500121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
526a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
52700121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
528a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
529a49dc2a2SStefano Zampini #endif
530a49dc2a2SStefano Zampini     } else { /* symmetric case */
53100121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
532a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
53300121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
534a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
535a49dc2a2SStefano Zampini     }
5362205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
53785e2c93fSHong Zhang 
5381683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
5398c778c55SBarry Smith   ierr = MatDenseRestoreArray(X,&x);CHKERRQ(ierr);
54085e2c93fSHong Zhang   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
54185e2c93fSHong Zhang   PetscFunctionReturn(0);
54285e2c93fSHong Zhang }
54385e2c93fSHong Zhang 
54400121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat);
54500121966SStefano Zampini 
546e0877f53SBarry Smith static PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy)
547da3a660dSBarry Smith {
548c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
549dfbe8321SBarry Smith   PetscErrorCode    ierr;
550f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
551f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
552c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
55367e560aaSBarry Smith 
5543a40ed3dSBarry Smith   PetscFunctionBegin;
555c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
556f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5571ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
558580bdb30SBarry Smith   ierr = PetscArraycpy(y,x,A->rmap->n);CHKERRQ(ierr);
5598208b9aeSStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
56000121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5618b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
56200121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
563e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS - Bad solve");
5648208b9aeSStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
565a49dc2a2SStefano Zampini     if (A->spd) {
56600121966SStefano Zampini #if defined(PETSC_USE_COMPLEX)
56700121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
56800121966SStefano Zampini #endif
56900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5708b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
57100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
57200121966SStefano Zampini #if defined(PETSC_USE_COMPLEX)
57300121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
57400121966SStefano Zampini #endif
575a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
576a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
577a49dc2a2SStefano Zampini     } else if (A->hermitian) {
57800121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
57900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
58000121966SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
58100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
58200121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
583ae7cfcebSSatish Balay #endif
584a49dc2a2SStefano Zampini     } else { /* symmetric case */
58500121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
586a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
58700121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
588a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
589da3a660dSBarry Smith     }
590a49dc2a2SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
591f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5921ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
593dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
5943a40ed3dSBarry Smith   PetscFunctionReturn(0);
595da3a660dSBarry Smith }
5966ee01492SSatish Balay 
597db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
598db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
599db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
600ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
601db4efbfdSBarry Smith {
602db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
603db4efbfdSBarry Smith   PetscErrorCode ierr;
604db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
605db4efbfdSBarry Smith 
606db4efbfdSBarry Smith   PetscFunctionBegin;
607c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
608c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
609db4efbfdSBarry Smith   if (!mat->pivots) {
6108208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
6113bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
612db4efbfdSBarry Smith   }
613db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
6148e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
6158b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
6168e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
6178e57ea43SSatish Balay 
618e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
619e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
6208208b9aeSStefano Zampini 
621db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6228208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
623db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
624d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
625db4efbfdSBarry Smith 
626f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
627f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
628f6224b95SHong Zhang 
629dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
630db4efbfdSBarry Smith   PetscFunctionReturn(0);
631db4efbfdSBarry Smith }
632db4efbfdSBarry Smith 
633a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
634ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
635db4efbfdSBarry Smith {
636db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
637db4efbfdSBarry Smith   PetscErrorCode ierr;
638c5df96a5SBarry Smith   PetscBLASInt   info,n;
639db4efbfdSBarry Smith 
640db4efbfdSBarry Smith   PetscFunctionBegin;
641c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
642db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
643a49dc2a2SStefano Zampini   if (A->spd) {
64400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
6458b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
64600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
647a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
648a49dc2a2SStefano Zampini   } else if (A->hermitian) {
649a49dc2a2SStefano Zampini     if (!mat->pivots) {
650a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
651a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
652a49dc2a2SStefano Zampini     }
653a49dc2a2SStefano Zampini     if (!mat->fwork) {
654a49dc2a2SStefano Zampini       PetscScalar dummy;
655a49dc2a2SStefano Zampini 
656a49dc2a2SStefano Zampini       mat->lfwork = -1;
65700121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
658a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
65900121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
660a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
661a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
662a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
663a49dc2a2SStefano Zampini     }
66400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
665a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
66600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
667a49dc2a2SStefano Zampini #endif
668a49dc2a2SStefano Zampini   } else { /* symmetric case */
669a49dc2a2SStefano Zampini     if (!mat->pivots) {
670a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
671a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
672a49dc2a2SStefano Zampini     }
673a49dc2a2SStefano Zampini     if (!mat->fwork) {
674a49dc2a2SStefano Zampini       PetscScalar dummy;
675a49dc2a2SStefano Zampini 
676a49dc2a2SStefano Zampini       mat->lfwork = -1;
67700121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
678a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
67900121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
680a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
681a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
682a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
683a49dc2a2SStefano Zampini     }
68400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
685a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
68600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
687a49dc2a2SStefano Zampini   }
688e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
6898208b9aeSStefano Zampini 
690db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6918208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
692db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
693d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
6942205254eSKarl Rupp 
695f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
696f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
697f6224b95SHong Zhang 
698eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
699db4efbfdSBarry Smith   PetscFunctionReturn(0);
700db4efbfdSBarry Smith }
701db4efbfdSBarry Smith 
7020481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
703db4efbfdSBarry Smith {
704db4efbfdSBarry Smith   PetscErrorCode ierr;
705db4efbfdSBarry Smith   MatFactorInfo  info;
706db4efbfdSBarry Smith 
707db4efbfdSBarry Smith   PetscFunctionBegin;
708db4efbfdSBarry Smith   info.fill = 1.0;
7092205254eSKarl Rupp 
710c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
711ca15aa20SStefano Zampini   ierr = (*fact->ops->choleskyfactor)(fact,0,&info);CHKERRQ(ierr);
712db4efbfdSBarry Smith   PetscFunctionReturn(0);
713db4efbfdSBarry Smith }
714db4efbfdSBarry Smith 
715ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
716db4efbfdSBarry Smith {
717db4efbfdSBarry Smith   PetscFunctionBegin;
718c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
7191bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
720719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
721bd443b22SStefano Zampini   fact->ops->solve                 = MatSolve_SeqDense;
722bd443b22SStefano Zampini   fact->ops->matsolve              = MatMatSolve_SeqDense;
723bd443b22SStefano Zampini   fact->ops->solvetranspose        = MatSolveTranspose_SeqDense;
724db4efbfdSBarry Smith   PetscFunctionReturn(0);
725db4efbfdSBarry Smith }
726db4efbfdSBarry Smith 
727ca15aa20SStefano Zampini PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
728db4efbfdSBarry Smith {
729db4efbfdSBarry Smith   PetscFunctionBegin;
730b66fe19dSMatthew G Knepley   fact->preallocated           = PETSC_TRUE;
731c3ef05f6SHong Zhang   fact->assembled              = PETSC_TRUE;
732719d5645SBarry Smith   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
733bd443b22SStefano Zampini   fact->ops->solve             = MatSolve_SeqDense;
734bd443b22SStefano Zampini   fact->ops->matsolve          = MatMatSolve_SeqDense;
735bd443b22SStefano Zampini   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense;
736db4efbfdSBarry Smith   PetscFunctionReturn(0);
737db4efbfdSBarry Smith }
738db4efbfdSBarry Smith 
739ca15aa20SStefano Zampini /* uses LAPACK */
740cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
741db4efbfdSBarry Smith {
742db4efbfdSBarry Smith   PetscErrorCode ierr;
743db4efbfdSBarry Smith 
744db4efbfdSBarry Smith   PetscFunctionBegin;
745ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
746db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
747ca15aa20SStefano Zampini   ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr);
748db4efbfdSBarry Smith   if (ftype == MAT_FACTOR_LU) {
749db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
750db4efbfdSBarry Smith   } else {
751db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
752db4efbfdSBarry Smith   }
753d5f3da31SBarry Smith   (*fact)->factortype = ftype;
75400c67f3bSHong Zhang 
75500c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
75600c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
757db4efbfdSBarry Smith   PetscFunctionReturn(0);
758db4efbfdSBarry Smith }
759db4efbfdSBarry Smith 
760289bc588SBarry Smith /* ------------------------------------------------------------------*/
761e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
762289bc588SBarry Smith {
763c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
764d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
765d9ca1df4SBarry Smith   const PetscScalar *b;
766dfbe8321SBarry Smith   PetscErrorCode    ierr;
767d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
768c5df96a5SBarry Smith   PetscBLASInt      o = 1,bm;
769289bc588SBarry Smith 
7703a40ed3dSBarry Smith   PetscFunctionBegin;
771ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
772c70f7ee4SJunchao Zhang   if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
773ca15aa20SStefano Zampini #endif
774422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
775c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
776289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
7773bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
7782dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
779289bc588SBarry Smith   }
7801ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
781d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
782b965ef7fSBarry Smith   its  = its*lits;
783e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
784289bc588SBarry Smith   while (its--) {
785fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
786289bc588SBarry Smith       for (i=0; i<m; i++) {
7873bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
78855a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
789289bc588SBarry Smith       }
790289bc588SBarry Smith     }
791fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
792289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
7933bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
79455a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
795289bc588SBarry Smith       }
796289bc588SBarry Smith     }
797289bc588SBarry Smith   }
798d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
7991ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8003a40ed3dSBarry Smith   PetscFunctionReturn(0);
801289bc588SBarry Smith }
802289bc588SBarry Smith 
803289bc588SBarry Smith /* -----------------------------------------------------------------*/
804ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
805289bc588SBarry Smith {
806c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
807d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
808d9ca1df4SBarry Smith   PetscScalar       *y;
809dfbe8321SBarry Smith   PetscErrorCode    ierr;
8100805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
811ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
8123a40ed3dSBarry Smith 
8133a40ed3dSBarry Smith   PetscFunctionBegin;
814c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
815c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
816d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8172bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
8185ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
8195ac36cfcSBarry Smith     PetscBLASInt i;
8205ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
8215ac36cfcSBarry Smith   } else {
8228b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
8235ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
8245ac36cfcSBarry Smith   }
825d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8262bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
828289bc588SBarry Smith }
829800995b7SMatthew Knepley 
830ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
831289bc588SBarry Smith {
832c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
833d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
834dfbe8321SBarry Smith   PetscErrorCode    ierr;
8350805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
836d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
839c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
840c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
841d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8422bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
8435ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
8445ac36cfcSBarry Smith     PetscBLASInt i;
8455ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
8465ac36cfcSBarry Smith   } else {
8478b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
8485ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
8495ac36cfcSBarry Smith   }
850d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8512bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
8523a40ed3dSBarry Smith   PetscFunctionReturn(0);
853289bc588SBarry Smith }
8546ee01492SSatish Balay 
855ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
856289bc588SBarry Smith {
857c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
858d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
859d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
860dfbe8321SBarry Smith   PetscErrorCode    ierr;
8610805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
8623a40ed3dSBarry Smith 
8633a40ed3dSBarry Smith   PetscFunctionBegin;
864c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
865c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
866d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
867600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
868d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8691ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8708b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
871d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8721ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
873dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8743a40ed3dSBarry Smith   PetscFunctionReturn(0);
875289bc588SBarry Smith }
8766ee01492SSatish Balay 
877ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
878289bc588SBarry Smith {
879c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
880d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
881d9ca1df4SBarry Smith   PetscScalar       *y;
882dfbe8321SBarry Smith   PetscErrorCode    ierr;
8830805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
88487828ca2SBarry Smith   PetscScalar       _DOne=1.0;
8853a40ed3dSBarry Smith 
8863a40ed3dSBarry Smith   PetscFunctionBegin;
887c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
888c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
889d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
890600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
891d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8921ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8938b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
894d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8951ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
896dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8973a40ed3dSBarry Smith   PetscFunctionReturn(0);
898289bc588SBarry Smith }
899289bc588SBarry Smith 
900289bc588SBarry Smith /* -----------------------------------------------------------------*/
901e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
902289bc588SBarry Smith {
903c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9046849ba73SBarry Smith   PetscErrorCode ierr;
90513f74950SBarry Smith   PetscInt       i;
90667e560aaSBarry Smith 
9073a40ed3dSBarry Smith   PetscFunctionBegin;
908d0f46423SBarry Smith   *ncols = A->cmap->n;
909289bc588SBarry Smith   if (cols) {
910854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr);
911d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
912289bc588SBarry Smith   }
913289bc588SBarry Smith   if (vals) {
914ca15aa20SStefano Zampini     const PetscScalar *v;
915ca15aa20SStefano Zampini 
916ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
917854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr);
918ca15aa20SStefano Zampini     v   += row;
919d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
920ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
921289bc588SBarry Smith   }
9223a40ed3dSBarry Smith   PetscFunctionReturn(0);
923289bc588SBarry Smith }
9246ee01492SSatish Balay 
925e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
926289bc588SBarry Smith {
927dfbe8321SBarry Smith   PetscErrorCode ierr;
9286e111a19SKarl Rupp 
929606d414cSSatish Balay   PetscFunctionBegin;
930606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
931606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
9323a40ed3dSBarry Smith   PetscFunctionReturn(0);
933289bc588SBarry Smith }
934289bc588SBarry Smith /* ----------------------------------------------------------------*/
935e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
936289bc588SBarry Smith {
937c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
938ca15aa20SStefano Zampini   PetscScalar      *av;
93913f74950SBarry Smith   PetscInt         i,j,idx=0;
940ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
941c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
942ca15aa20SStefano Zampini #endif
943ca15aa20SStefano Zampini   PetscErrorCode   ierr;
944d6dfbf8fSBarry Smith 
9453a40ed3dSBarry Smith   PetscFunctionBegin;
946ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr);
947289bc588SBarry Smith   if (!mat->roworiented) {
948dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
949289bc588SBarry Smith       for (j=0; j<n; j++) {
950cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
951cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
952289bc588SBarry Smith         for (i=0; i<m; i++) {
953cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
954cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
955ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
956289bc588SBarry Smith         }
957289bc588SBarry Smith       }
9583a40ed3dSBarry Smith     } else {
959289bc588SBarry Smith       for (j=0; j<n; j++) {
960cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
961cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
962289bc588SBarry Smith         for (i=0; i<m; i++) {
963cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
964cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
965ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
966289bc588SBarry Smith         }
967289bc588SBarry Smith       }
968289bc588SBarry Smith     }
9693a40ed3dSBarry Smith   } else {
970dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
971e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
972cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
973cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
974e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
975cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
976cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
977ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
978e8d4e0b9SBarry Smith         }
979e8d4e0b9SBarry Smith       }
9803a40ed3dSBarry Smith     } else {
981289bc588SBarry Smith       for (i=0; i<m; i++) {
982cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
983cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
984289bc588SBarry Smith         for (j=0; j<n; j++) {
985cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
986cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
987ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
988289bc588SBarry Smith         }
989289bc588SBarry Smith       }
990289bc588SBarry Smith     }
991e8d4e0b9SBarry Smith   }
992ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
993ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
994c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
995c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
996ca15aa20SStefano Zampini #endif
997ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr);
998ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
999c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1000ca15aa20SStefano Zampini #endif
10013a40ed3dSBarry Smith   PetscFunctionReturn(0);
1002289bc588SBarry Smith }
1003e8d4e0b9SBarry Smith 
1004e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1005ae80bb75SLois Curfman McInnes {
1006ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1007ca15aa20SStefano Zampini   const PetscScalar *vv;
100813f74950SBarry Smith   PetscInt          i,j;
1009ca15aa20SStefano Zampini   PetscErrorCode    ierr;
1010ae80bb75SLois Curfman McInnes 
10113a40ed3dSBarry Smith   PetscFunctionBegin;
1012ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1013ae80bb75SLois Curfman McInnes   /* row-oriented output */
1014ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
101597e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1016e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1017ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
10186f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1019e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
1020ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1021ae80bb75SLois Curfman McInnes     }
1022ae80bb75SLois Curfman McInnes   }
1023ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
10243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1025ae80bb75SLois Curfman McInnes }
1026ae80bb75SLois Curfman McInnes 
1027289bc588SBarry Smith /* -----------------------------------------------------------------*/
1028289bc588SBarry Smith 
10298491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1030aabbc4fbSShri Abhyankar {
1031aabbc4fbSShri Abhyankar   PetscErrorCode    ierr;
10328491ab44SLisandro Dalcin   PetscBool         skipHeader;
10338491ab44SLisandro Dalcin   PetscViewerFormat format;
10348491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
10358491ab44SLisandro Dalcin   const PetscScalar *v;
10368491ab44SLisandro Dalcin   PetscScalar       *vwork;
1037aabbc4fbSShri Abhyankar 
1038aabbc4fbSShri Abhyankar   PetscFunctionBegin;
10398491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10408491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
10418491ab44SLisandro Dalcin   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
10428491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1043aabbc4fbSShri Abhyankar 
10448491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
10458491ab44SLisandro Dalcin 
10468491ab44SLisandro Dalcin   /* write matrix header */
10478491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
10488491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
10498491ab44SLisandro Dalcin   if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);}
10508491ab44SLisandro Dalcin 
10518491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
10528491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
10538491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
10548491ab44SLisandro Dalcin     /* store row lengths for each row */
10558491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr);
10568491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
10578491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
10588491ab44SLisandro Dalcin     /* store column indices (zero start index) */
10598491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
10608491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
10618491ab44SLisandro Dalcin         iwork[k] = j;
10628491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
10638491ab44SLisandro Dalcin     ierr = PetscFree(iwork);CHKERRQ(ierr);
10648491ab44SLisandro Dalcin   }
10658491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
10668491ab44SLisandro Dalcin   ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr);
10678491ab44SLisandro Dalcin   ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr);
10688491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
10698491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
10708491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
10718491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
10728491ab44SLisandro Dalcin   ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr);
10738491ab44SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
10748491ab44SLisandro Dalcin   ierr = PetscFree(vwork);CHKERRQ(ierr);
10758491ab44SLisandro Dalcin   PetscFunctionReturn(0);
10768491ab44SLisandro Dalcin }
10778491ab44SLisandro Dalcin 
10788491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
10798491ab44SLisandro Dalcin {
10808491ab44SLisandro Dalcin   PetscErrorCode ierr;
10818491ab44SLisandro Dalcin   PetscBool      skipHeader;
10828491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
10838491ab44SLisandro Dalcin   PetscInt       rows,cols;
10848491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
10858491ab44SLisandro Dalcin 
10868491ab44SLisandro Dalcin   PetscFunctionBegin;
10878491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10888491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
10898491ab44SLisandro Dalcin 
10908491ab44SLisandro Dalcin   if (!skipHeader) {
10918491ab44SLisandro Dalcin     ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
10928491ab44SLisandro Dalcin     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
10938491ab44SLisandro Dalcin     M = header[1]; N = header[2];
10948491ab44SLisandro Dalcin     if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
10958491ab44SLisandro Dalcin     if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
10968491ab44SLisandro Dalcin     nz = header[3];
10978491ab44SLisandro Dalcin     if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz);
1098aabbc4fbSShri Abhyankar   } else {
10998491ab44SLisandro Dalcin     ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
11008491ab44SLisandro Dalcin     if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
11018491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1102e6324fbbSBarry Smith   }
1103aabbc4fbSShri Abhyankar 
11048491ab44SLisandro Dalcin   /* setup global sizes if not set */
11058491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
11068491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
11078491ab44SLisandro Dalcin   ierr = MatSetUp(mat);CHKERRQ(ierr);
11088491ab44SLisandro Dalcin   /* check if global sizes are correct */
11098491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
11108491ab44SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
1111aabbc4fbSShri Abhyankar 
11128491ab44SLisandro Dalcin   ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr);
11138491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
11148491ab44SLisandro Dalcin   ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr);
11158491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
11168491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
11178491ab44SLisandro Dalcin     PetscInt nnz = m*N;
11188491ab44SLisandro Dalcin     /* read in matrix values */
11198491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr);
11208491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
11218491ab44SLisandro Dalcin     /* store values in column major order */
11228491ab44SLisandro Dalcin     for (j=0; j<N; j++)
11238491ab44SLisandro Dalcin       for (i=0; i<m; i++)
11248491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
11258491ab44SLisandro Dalcin     ierr = PetscFree(vwork);CHKERRQ(ierr);
11268491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
11278491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
11288491ab44SLisandro Dalcin     /* read in row lengths */
11298491ab44SLisandro Dalcin     ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr);
11308491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
11318491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
11328491ab44SLisandro Dalcin     /* read in column indices and values */
11338491ab44SLisandro Dalcin     ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr);
11348491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
11358491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
11368491ab44SLisandro Dalcin     /* store values in column major order */
11378491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
11388491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
11398491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
11408491ab44SLisandro Dalcin     ierr = PetscFree(rlens);CHKERRQ(ierr);
11418491ab44SLisandro Dalcin     ierr = PetscFree2(icols,vwork);CHKERRQ(ierr);
1142aabbc4fbSShri Abhyankar   }
11438491ab44SLisandro Dalcin   ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr);
11448491ab44SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11458491ab44SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1146aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1147aabbc4fbSShri Abhyankar }
1148aabbc4fbSShri Abhyankar 
1149eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1150eb91f321SVaclav Hapla {
1151eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1152eb91f321SVaclav Hapla   PetscErrorCode ierr;
1153eb91f321SVaclav Hapla 
1154eb91f321SVaclav Hapla   PetscFunctionBegin;
1155eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1156eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1157eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1158eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1159eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1160eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
1161eb91f321SVaclav Hapla   if (isbinary) {
11628491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1163eb91f321SVaclav Hapla   } else if (ishdf5) {
1164eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
1165eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1166eb91f321SVaclav Hapla #else
1167eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1168eb91f321SVaclav Hapla #endif
1169eb91f321SVaclav Hapla   } else {
1170eb91f321SVaclav Hapla     SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1171eb91f321SVaclav Hapla   }
1172eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1173eb91f321SVaclav Hapla }
1174eb91f321SVaclav Hapla 
11756849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1176289bc588SBarry Smith {
1177932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1178dfbe8321SBarry Smith   PetscErrorCode    ierr;
117913f74950SBarry Smith   PetscInt          i,j;
11802dcb1b2aSMatthew Knepley   const char        *name;
1181ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1182f3ef73ceSBarry Smith   PetscViewerFormat format;
11835f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1184ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
11855f481a85SSatish Balay #endif
1186932b0c3eSLois Curfman McInnes 
11873a40ed3dSBarry Smith   PetscFunctionBegin;
1188ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1189b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1190456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
11913a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1192fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1193d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1194d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1195ca15aa20SStefano Zampini       v    = av + i;
119677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1197d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1198aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1199329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
120057622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1201329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
120257622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
12036831982aSBarry Smith         }
120480cd9d93SLois Curfman McInnes #else
12056831982aSBarry Smith         if (*v) {
120657622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
12076831982aSBarry Smith         }
120880cd9d93SLois Curfman McInnes #endif
12091b807ce4Svictorle         v += a->lda;
121080cd9d93SLois Curfman McInnes       }
1211b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
121280cd9d93SLois Curfman McInnes     }
1213d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
12143a40ed3dSBarry Smith   } else {
1215d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1216aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
121747989497SBarry Smith     /* determine if matrix has all real values */
1218ca15aa20SStefano Zampini     v = av;
1219d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1220ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
122147989497SBarry Smith     }
122247989497SBarry Smith #endif
1223fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
12243a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1225d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1226d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1227fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1228ffac6cdbSBarry Smith     }
1229ffac6cdbSBarry Smith 
1230d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1231ca15aa20SStefano Zampini       v = av + i;
1232d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1233aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
123447989497SBarry Smith         if (allreal) {
1235c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
123647989497SBarry Smith         } else {
1237c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
123847989497SBarry Smith         }
1239289bc588SBarry Smith #else
1240c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1241289bc588SBarry Smith #endif
12421b807ce4Svictorle         v += a->lda;
1243289bc588SBarry Smith       }
1244b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1245289bc588SBarry Smith     }
1246fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1247b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1248ffac6cdbSBarry Smith     }
1249d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1250da3a660dSBarry Smith   }
1251ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1252b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
12533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1254289bc588SBarry Smith }
1255289bc588SBarry Smith 
12569804daf3SBarry Smith #include <petscdraw.h>
1257e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1258f1af5d2fSBarry Smith {
1259f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
12606849ba73SBarry Smith   PetscErrorCode    ierr;
1261383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1262383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1263ca15aa20SStefano Zampini   const PetscScalar *v;
1264b0a32e0cSBarry Smith   PetscViewer       viewer;
1265b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1266f3ef73ceSBarry Smith   PetscViewerFormat format;
1267f1af5d2fSBarry Smith 
1268f1af5d2fSBarry Smith   PetscFunctionBegin;
1269f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1270b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1271b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1272f1af5d2fSBarry Smith 
1273f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1274ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1275fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1276383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1277f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1278f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1279383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1280f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1281f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1282f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1283ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1284ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1285ca15aa20SStefano Zampini         else continue;
1286b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1287f1af5d2fSBarry Smith       }
1288f1af5d2fSBarry Smith     }
1289383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1290f1af5d2fSBarry Smith   } else {
1291f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1292f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1293b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1294b05fc000SLisandro Dalcin     PetscDraw popup;
1295b05fc000SLisandro Dalcin 
1296f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1297f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1298f1af5d2fSBarry Smith     }
1299383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1300b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
130145f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1302383922c3SLisandro Dalcin 
1303383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1304f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1305f1af5d2fSBarry Smith       x_l = j;
1306f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1307f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1308f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1309f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1310b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1311b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1312f1af5d2fSBarry Smith       }
1313f1af5d2fSBarry Smith     }
1314383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1315f1af5d2fSBarry Smith   }
1316ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1317f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1318f1af5d2fSBarry Smith }
1319f1af5d2fSBarry Smith 
1320e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1321f1af5d2fSBarry Smith {
1322b0a32e0cSBarry Smith   PetscDraw      draw;
1323ace3abfcSBarry Smith   PetscBool      isnull;
1324329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326f1af5d2fSBarry Smith 
1327f1af5d2fSBarry Smith   PetscFunctionBegin;
1328b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1329b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1330abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1331f1af5d2fSBarry Smith 
1332d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1333f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1334b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1335832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1336b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
13370298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1338832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1339f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1340f1af5d2fSBarry Smith }
1341f1af5d2fSBarry Smith 
1342dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1343932b0c3eSLois Curfman McInnes {
1344dfbe8321SBarry Smith   PetscErrorCode ierr;
1345ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1346932b0c3eSLois Curfman McInnes 
13473a40ed3dSBarry Smith   PetscFunctionBegin;
1348251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1349251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1350251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
13510f5bd95cSBarry Smith 
1352c45a1595SBarry Smith   if (iascii) {
1353c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
13540f5bd95cSBarry Smith   } else if (isbinary) {
1355637a0070SStefano Zampini     ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr);
1356f1af5d2fSBarry Smith   } else if (isdraw) {
1357f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1358932b0c3eSLois Curfman McInnes   }
13593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1360932b0c3eSLois Curfman McInnes }
1361289bc588SBarry Smith 
1362637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1363d3042a70SBarry Smith {
1364d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1365d3042a70SBarry Smith 
1366d3042a70SBarry Smith   PetscFunctionBegin;
13676947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1368d5ea218eSStefano Zampini   if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray first");
1369d3042a70SBarry Smith   a->unplacedarray       = a->v;
1370d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1371d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1372637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1373ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1374c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1375ca15aa20SStefano Zampini #endif
1376d3042a70SBarry Smith   PetscFunctionReturn(0);
1377d3042a70SBarry Smith }
1378d3042a70SBarry Smith 
1379d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1380d3042a70SBarry Smith {
1381d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1382d3042a70SBarry Smith 
1383d3042a70SBarry Smith   PetscFunctionBegin;
13846947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1385d3042a70SBarry Smith   a->v             = a->unplacedarray;
1386d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1387d3042a70SBarry Smith   a->unplacedarray = NULL;
1388ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1389c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1390ca15aa20SStefano Zampini #endif
1391d3042a70SBarry Smith   PetscFunctionReturn(0);
1392d3042a70SBarry Smith }
1393d3042a70SBarry Smith 
1394d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1395d5ea218eSStefano Zampini {
1396d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1397d5ea218eSStefano Zampini   PetscErrorCode ierr;
1398d5ea218eSStefano Zampini 
1399d5ea218eSStefano Zampini   PetscFunctionBegin;
1400d5ea218eSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1401d5ea218eSStefano Zampini   if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); }
1402d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1403d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1404d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1405d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1406d5ea218eSStefano Zampini #endif
1407d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1408d5ea218eSStefano Zampini }
1409d5ea218eSStefano Zampini 
1410ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1411289bc588SBarry Smith {
1412ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1413dfbe8321SBarry Smith   PetscErrorCode ierr;
141490f02eecSBarry Smith 
14153a40ed3dSBarry Smith   PetscFunctionBegin;
1416aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1417d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1418a5a9c739SBarry Smith #endif
141905b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1420a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1421abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
14226857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1423637a0070SStefano Zampini   if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);}
14246947451fSStefano Zampini   ierr = VecDestroy(&l->cvec);CHKERRQ(ierr);
1425bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1426dbd8c25aSHong Zhang 
1427dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
142849a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
1429ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
1430bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
143152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
1432d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1433d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1434d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
143552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
143652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
14376947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
14386947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
14398baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
14408baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14418baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
14428baccfbdSHong Zhang #endif
14432bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
14442bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr);
14454222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr);
14464222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr);
14474222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaijcusparse_seqdense_C",NULL);CHKERRQ(ierr);
14482bf066beSStefano Zampini #endif
1449bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
14504222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14514222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr);
14524222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
14534222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
145452c5f739Sprj- 
145586aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
145686aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
14576947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
14586947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
14596947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
14606947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
14616947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
14626947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
14633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1464289bc588SBarry Smith }
1465289bc588SBarry Smith 
1466e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1467289bc588SBarry Smith {
1468c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
14696849ba73SBarry Smith   PetscErrorCode ierr;
147013f74950SBarry Smith   PetscInt       k,j,m,n,M;
147187828ca2SBarry Smith   PetscScalar    *v,tmp;
147248b35521SBarry Smith 
14733a40ed3dSBarry Smith   PetscFunctionBegin;
1474ca15aa20SStefano Zampini   m = A->rmap->n; M = mat->lda; n = A->cmap->n;
14752847e3fdSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX && m == n) { /* in place transpose */
1476ca15aa20SStefano Zampini     ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1477d3e5ee88SLois Curfman McInnes     for (j=0; j<m; j++) {
1478289bc588SBarry Smith       for (k=0; k<j; k++) {
14791b807ce4Svictorle         tmp        = v[j + k*M];
14801b807ce4Svictorle         v[j + k*M] = v[k + j*M];
14811b807ce4Svictorle         v[k + j*M] = tmp;
1482289bc588SBarry Smith       }
1483289bc588SBarry Smith     }
1484ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
14853a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1486d3e5ee88SLois Curfman McInnes     Mat          tmat;
1487ec8511deSBarry Smith     Mat_SeqDense *tmatd;
148887828ca2SBarry Smith     PetscScalar  *v2;
1489af36a384SStefano Zampini     PetscInt     M2;
1490ea709b57SSatish Balay 
14912847e3fdSStefano Zampini     if (reuse != MAT_REUSE_MATRIX) {
1492ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1493d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
14947adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
14950298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1496ca15aa20SStefano Zampini     } else tmat = *matout;
1497ca15aa20SStefano Zampini 
1498ca15aa20SStefano Zampini     ierr  = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
1499ca15aa20SStefano Zampini     ierr  = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr);
1500ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1501ca15aa20SStefano Zampini     M2    = tmatd->lda;
1502d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1503af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1504d3e5ee88SLois Curfman McInnes     }
1505ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr);
1506ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
15076d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15086d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15092847e3fdSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = tmat;
15102847e3fdSStefano Zampini     else {
15112847e3fdSStefano Zampini       ierr = MatHeaderMerge(A,&tmat);CHKERRQ(ierr);
15122847e3fdSStefano Zampini     }
151348b35521SBarry Smith   }
15143a40ed3dSBarry Smith   PetscFunctionReturn(0);
1515289bc588SBarry Smith }
1516289bc588SBarry Smith 
1517e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1518289bc588SBarry Smith {
1519c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1520c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1521ca15aa20SStefano Zampini   PetscInt          i;
1522ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
1523ca15aa20SStefano Zampini   PetscErrorCode    ierr;
15249ea5d5aeSSatish Balay 
15253a40ed3dSBarry Smith   PetscFunctionBegin;
1526d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1527d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1528ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr);
1529ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr);
1530ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
1531ca15aa20SStefano Zampini     ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr);
1532ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1533ca15aa20SStefano Zampini     v1 += mat1->lda;
1534ca15aa20SStefano Zampini     v2 += mat2->lda;
15351b807ce4Svictorle   }
1536ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr);
1537ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr);
153877c4ece6SBarry Smith   *flg = PETSC_TRUE;
15393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1540289bc588SBarry Smith }
1541289bc588SBarry Smith 
1542e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1543289bc588SBarry Smith {
1544c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
154513f74950SBarry Smith   PetscInt          i,n,len;
1546ca15aa20SStefano Zampini   PetscScalar       *x;
1547ca15aa20SStefano Zampini   const PetscScalar *vv;
1548ca15aa20SStefano Zampini   PetscErrorCode    ierr;
154944cd7ae7SLois Curfman McInnes 
15503a40ed3dSBarry Smith   PetscFunctionBegin;
15517a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
15521ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1553d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1554ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1555e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
155644cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1557ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1558289bc588SBarry Smith   }
1559ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
15601ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1562289bc588SBarry Smith }
1563289bc588SBarry Smith 
1564e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1565289bc588SBarry Smith {
1566c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1567f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1568ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1569dfbe8321SBarry Smith   PetscErrorCode    ierr;
1570d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
157155659b69SBarry Smith 
15723a40ed3dSBarry Smith   PetscFunctionBegin;
1573ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr);
157428988994SBarry Smith   if (ll) {
15757a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1576f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1577e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1578da3a660dSBarry Smith     for (i=0; i<m; i++) {
1579da3a660dSBarry Smith       x = l[i];
1580ca15aa20SStefano Zampini       v = vv + i;
1581b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1582da3a660dSBarry Smith     }
1583f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1584eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1585da3a660dSBarry Smith   }
158628988994SBarry Smith   if (rr) {
15877a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1588f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1589e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1590da3a660dSBarry Smith     for (i=0; i<n; i++) {
1591da3a660dSBarry Smith       x = r[i];
1592ca15aa20SStefano Zampini       v = vv + i*mat->lda;
15932205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1594da3a660dSBarry Smith     }
1595f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1596eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1597da3a660dSBarry Smith   }
1598ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr);
15993a40ed3dSBarry Smith   PetscFunctionReturn(0);
1600289bc588SBarry Smith }
1601289bc588SBarry Smith 
1602ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1603289bc588SBarry Smith {
1604c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1605ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1606329f5518SBarry Smith   PetscReal         sum  = 0.0;
1607d0f46423SBarry Smith   PetscInt          lda  =mat->lda,m=A->rmap->n,i,j;
1608efee365bSSatish Balay   PetscErrorCode    ierr;
160955659b69SBarry Smith 
16103a40ed3dSBarry Smith   PetscFunctionBegin;
1611ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
1612ca15aa20SStefano Zampini   v    = vv;
1613289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1614a5ce6ee0Svictorle     if (lda>m) {
1615d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1616ca15aa20SStefano Zampini         v = vv+j*lda;
1617a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1618a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1619a5ce6ee0Svictorle         }
1620a5ce6ee0Svictorle       }
1621a5ce6ee0Svictorle     } else {
1622570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1623570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
1624570b7f6dSBarry Smith       *nrm = BLASnrm2_(&cnt,v,&one);
1625570b7f6dSBarry Smith     }
1626570b7f6dSBarry Smith #else
1627d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1628329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1629289bc588SBarry Smith       }
1630a5ce6ee0Svictorle     }
16318f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
1632570b7f6dSBarry Smith #endif
1633dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
16343a40ed3dSBarry Smith   } else if (type == NORM_1) {
1635064f8208SBarry Smith     *nrm = 0.0;
1636d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1637ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
1638289bc588SBarry Smith       sum = 0.0;
1639d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
164033a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1641289bc588SBarry Smith       }
1642064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1643289bc588SBarry Smith     }
1644eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
16453a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1646064f8208SBarry Smith     *nrm = 0.0;
1647d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
1648ca15aa20SStefano Zampini       v   = vv + j;
1649289bc588SBarry Smith       sum = 0.0;
1650d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
16511b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1652289bc588SBarry Smith       }
1653064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1654289bc588SBarry Smith     }
1655eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
1656e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
1657ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
16583a40ed3dSBarry Smith   PetscFunctionReturn(0);
1659289bc588SBarry Smith }
1660289bc588SBarry Smith 
1661e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
1662289bc588SBarry Smith {
1663c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
166463ba0a88SBarry Smith   PetscErrorCode ierr;
166567e560aaSBarry Smith 
16663a40ed3dSBarry Smith   PetscFunctionBegin;
1667b5a2b587SKris Buschelman   switch (op) {
1668b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
16694e0d8c25SBarry Smith     aij->roworiented = flg;
1670b5a2b587SKris Buschelman     break;
1671512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1672b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16733971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
16744e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
167513fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
1676b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1677b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
16780f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
16795021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
1680071fcb05SBarry Smith   case MAT_SORTED_FULL:
16815021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
16825021d80fSJed Brown     break;
16835021d80fSJed Brown   case MAT_SPD:
168477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16869a4540c5SBarry Smith   case MAT_HERMITIAN:
16879a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16885021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
168977e54ba9SKris Buschelman     break;
1690b5a2b587SKris Buschelman   default:
1691e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
16923a40ed3dSBarry Smith   }
16933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1694289bc588SBarry Smith }
1695289bc588SBarry Smith 
1696e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
16976f0a148fSBarry Smith {
1698ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
16996849ba73SBarry Smith   PetscErrorCode ierr;
1700d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
1701ca15aa20SStefano Zampini   PetscScalar    *v;
17023a40ed3dSBarry Smith 
17033a40ed3dSBarry Smith   PetscFunctionBegin;
1704ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1705a5ce6ee0Svictorle   if (lda>m) {
1706d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1707ca15aa20SStefano Zampini       ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr);
1708a5ce6ee0Svictorle     }
1709a5ce6ee0Svictorle   } else {
1710ca15aa20SStefano Zampini     ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
1711a5ce6ee0Svictorle   }
1712ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
17133a40ed3dSBarry Smith   PetscFunctionReturn(0);
17146f0a148fSBarry Smith }
17156f0a148fSBarry Smith 
1716e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17176f0a148fSBarry Smith {
171897b48c8fSBarry Smith   PetscErrorCode    ierr;
1719ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1720b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
1721ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
172297b48c8fSBarry Smith   const PetscScalar *xx;
172355659b69SBarry Smith 
17243a40ed3dSBarry Smith   PetscFunctionBegin;
172576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1726b9679d65SBarry Smith     for (i=0; i<N; i++) {
1727b9679d65SBarry Smith       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1728b9679d65SBarry Smith       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1729b9679d65SBarry Smith     }
173076bd3646SJed Brown   }
1731ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1732b9679d65SBarry Smith 
173397b48c8fSBarry Smith   /* fix right hand side if needed */
173497b48c8fSBarry Smith   if (x && b) {
173597b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
173697b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
17372205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
173897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
173997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
174097b48c8fSBarry Smith   }
174197b48c8fSBarry Smith 
1742ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
17436f0a148fSBarry Smith   for (i=0; i<N; i++) {
1744ca15aa20SStefano Zampini     slot = v + rows[i];
1745b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
17466f0a148fSBarry Smith   }
1747f4df32b1SMatthew Knepley   if (diag != 0.0) {
1748b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
17496f0a148fSBarry Smith     for (i=0; i<N; i++) {
1750ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1751f4df32b1SMatthew Knepley       *slot = diag;
17526f0a148fSBarry Smith     }
17536f0a148fSBarry Smith   }
1754ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
17553a40ed3dSBarry Smith   PetscFunctionReturn(0);
17566f0a148fSBarry Smith }
1757557bce09SLois Curfman McInnes 
175849a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
175949a6ff4bSBarry Smith {
176049a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
176149a6ff4bSBarry Smith 
176249a6ff4bSBarry Smith   PetscFunctionBegin;
176349a6ff4bSBarry Smith   *lda = mat->lda;
176449a6ff4bSBarry Smith   PetscFunctionReturn(0);
176549a6ff4bSBarry Smith }
176649a6ff4bSBarry Smith 
1767637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
176864e87e97SBarry Smith {
1769c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
17703a40ed3dSBarry Smith 
17713a40ed3dSBarry Smith   PetscFunctionBegin;
177264e87e97SBarry Smith   *array = mat->v;
17733a40ed3dSBarry Smith   PetscFunctionReturn(0);
177464e87e97SBarry Smith }
17750754003eSLois Curfman McInnes 
1776637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
1777ff14e315SSatish Balay {
17783a40ed3dSBarry Smith   PetscFunctionBegin;
1779637a0070SStefano Zampini   *array = NULL;
17803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1781ff14e315SSatish Balay }
17820754003eSLois Curfman McInnes 
1783dec5eb66SMatthew G Knepley /*@C
178449a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
178549a6ff4bSBarry Smith 
1786ad16ce7aSStefano Zampini    Not collective
178749a6ff4bSBarry Smith 
178849a6ff4bSBarry Smith    Input Parameter:
178949a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
179049a6ff4bSBarry Smith 
179149a6ff4bSBarry Smith    Output Parameter:
179249a6ff4bSBarry Smith .   lda - the leading dimension
179349a6ff4bSBarry Smith 
179449a6ff4bSBarry Smith    Level: intermediate
179549a6ff4bSBarry Smith 
1796ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
179749a6ff4bSBarry Smith @*/
179849a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
179949a6ff4bSBarry Smith {
180049a6ff4bSBarry Smith   PetscErrorCode ierr;
180149a6ff4bSBarry Smith 
180249a6ff4bSBarry Smith   PetscFunctionBegin;
1803d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1804d5ea218eSStefano Zampini   PetscValidPointer(lda,2);
180549a6ff4bSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr);
180649a6ff4bSBarry Smith   PetscFunctionReturn(0);
180749a6ff4bSBarry Smith }
180849a6ff4bSBarry Smith 
180949a6ff4bSBarry Smith /*@C
1810ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
1811ad16ce7aSStefano Zampini 
1812ad16ce7aSStefano Zampini    Not collective
1813ad16ce7aSStefano Zampini 
1814ad16ce7aSStefano Zampini    Input Parameter:
1815ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
1816ad16ce7aSStefano Zampini -  lda - the leading dimension
1817ad16ce7aSStefano Zampini 
1818ad16ce7aSStefano Zampini    Level: intermediate
1819ad16ce7aSStefano Zampini 
1820ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
1821ad16ce7aSStefano Zampini @*/
1822ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
1823ad16ce7aSStefano Zampini {
1824ad16ce7aSStefano Zampini   PetscErrorCode ierr;
1825ad16ce7aSStefano Zampini 
1826ad16ce7aSStefano Zampini   PetscFunctionBegin;
1827ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1828ad16ce7aSStefano Zampini   ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr);
1829ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
1830ad16ce7aSStefano Zampini }
1831ad16ce7aSStefano Zampini 
1832ad16ce7aSStefano Zampini /*@C
18336947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
183473a71a0fSBarry Smith 
18358572280aSBarry Smith    Logically Collective on Mat
183673a71a0fSBarry Smith 
183773a71a0fSBarry Smith    Input Parameter:
18386947451fSStefano Zampini .  mat - a dense matrix
183973a71a0fSBarry Smith 
184073a71a0fSBarry Smith    Output Parameter:
184173a71a0fSBarry Smith .   array - pointer to the data
184273a71a0fSBarry Smith 
184373a71a0fSBarry Smith    Level: intermediate
184473a71a0fSBarry Smith 
18456947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
184673a71a0fSBarry Smith @*/
18478c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
184873a71a0fSBarry Smith {
184973a71a0fSBarry Smith   PetscErrorCode ierr;
185073a71a0fSBarry Smith 
185173a71a0fSBarry Smith   PetscFunctionBegin;
1852d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1853d5ea218eSStefano Zampini   PetscValidPointer(array,2);
18548c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
185573a71a0fSBarry Smith   PetscFunctionReturn(0);
185673a71a0fSBarry Smith }
185773a71a0fSBarry Smith 
1858dec5eb66SMatthew G Knepley /*@C
1859579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
186073a71a0fSBarry Smith 
18618572280aSBarry Smith    Logically Collective on Mat
18628572280aSBarry Smith 
18638572280aSBarry Smith    Input Parameters:
18646947451fSStefano Zampini +  mat - a dense matrix
1865a2b725a8SWilliam Gropp -  array - pointer to the data
18668572280aSBarry Smith 
18678572280aSBarry Smith    Level: intermediate
18688572280aSBarry Smith 
18696947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
18708572280aSBarry Smith @*/
18718572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
18728572280aSBarry Smith {
18738572280aSBarry Smith   PetscErrorCode ierr;
18748572280aSBarry Smith 
18758572280aSBarry Smith   PetscFunctionBegin;
1876d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1877d5ea218eSStefano Zampini   PetscValidPointer(array,2);
18788572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
18798572280aSBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1880637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1881637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1882637a0070SStefano Zampini #endif
18838572280aSBarry Smith   PetscFunctionReturn(0);
18848572280aSBarry Smith }
18858572280aSBarry Smith 
18868572280aSBarry Smith /*@C
18876947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
18888572280aSBarry Smith 
18898572280aSBarry Smith    Not Collective
18908572280aSBarry Smith 
18918572280aSBarry Smith    Input Parameter:
18926947451fSStefano Zampini .  mat - a dense matrix
18938572280aSBarry Smith 
18948572280aSBarry Smith    Output Parameter:
18958572280aSBarry Smith .   array - pointer to the data
18968572280aSBarry Smith 
18978572280aSBarry Smith    Level: intermediate
18988572280aSBarry Smith 
18996947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
19008572280aSBarry Smith @*/
19018572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
19028572280aSBarry Smith {
19038572280aSBarry Smith   PetscErrorCode ierr;
19048572280aSBarry Smith 
19058572280aSBarry Smith   PetscFunctionBegin;
1906d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1907d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19088572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
19098572280aSBarry Smith   PetscFunctionReturn(0);
19108572280aSBarry Smith }
19118572280aSBarry Smith 
19128572280aSBarry Smith /*@C
19136947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
19148572280aSBarry Smith 
191573a71a0fSBarry Smith    Not Collective
191673a71a0fSBarry Smith 
191773a71a0fSBarry Smith    Input Parameters:
19186947451fSStefano Zampini +  mat - a dense matrix
1919a2b725a8SWilliam Gropp -  array - pointer to the data
192073a71a0fSBarry Smith 
192173a71a0fSBarry Smith    Level: intermediate
192273a71a0fSBarry Smith 
19236947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
192473a71a0fSBarry Smith @*/
19258572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
192673a71a0fSBarry Smith {
192773a71a0fSBarry Smith   PetscErrorCode ierr;
192873a71a0fSBarry Smith 
192973a71a0fSBarry Smith   PetscFunctionBegin;
1930d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1931d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19328572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
193373a71a0fSBarry Smith   PetscFunctionReturn(0);
193473a71a0fSBarry Smith }
193573a71a0fSBarry Smith 
19366947451fSStefano Zampini /*@C
19376947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
19386947451fSStefano Zampini 
19396947451fSStefano Zampini    Not Collective
19406947451fSStefano Zampini 
19416947451fSStefano Zampini    Input Parameter:
19426947451fSStefano Zampini .  mat - a dense matrix
19436947451fSStefano Zampini 
19446947451fSStefano Zampini    Output Parameter:
19456947451fSStefano Zampini .   array - pointer to the data
19466947451fSStefano Zampini 
19476947451fSStefano Zampini    Level: intermediate
19486947451fSStefano Zampini 
19496947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
19506947451fSStefano Zampini @*/
19516947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
19526947451fSStefano Zampini {
19536947451fSStefano Zampini   PetscErrorCode ierr;
19546947451fSStefano Zampini 
19556947451fSStefano Zampini   PetscFunctionBegin;
1956d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1957d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19586947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
19596947451fSStefano Zampini   PetscFunctionReturn(0);
19606947451fSStefano Zampini }
19616947451fSStefano Zampini 
19626947451fSStefano Zampini /*@C
19636947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
19646947451fSStefano Zampini 
19656947451fSStefano Zampini    Not Collective
19666947451fSStefano Zampini 
19676947451fSStefano Zampini    Input Parameters:
19686947451fSStefano Zampini +  mat - a dense matrix
19696947451fSStefano Zampini -  array - pointer to the data
19706947451fSStefano Zampini 
19716947451fSStefano Zampini    Level: intermediate
19726947451fSStefano Zampini 
19736947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
19746947451fSStefano Zampini @*/
19756947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
19766947451fSStefano Zampini {
19776947451fSStefano Zampini   PetscErrorCode ierr;
19786947451fSStefano Zampini 
19796947451fSStefano Zampini   PetscFunctionBegin;
1980d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1981d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19826947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
19836947451fSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
19846947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
19856947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
19866947451fSStefano Zampini #endif
19876947451fSStefano Zampini   PetscFunctionReturn(0);
19886947451fSStefano Zampini }
19896947451fSStefano Zampini 
19907dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
19910754003eSLois Curfman McInnes {
1992c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
19936849ba73SBarry Smith   PetscErrorCode ierr;
1994ca15aa20SStefano Zampini   PetscInt       i,j,nrows,ncols,blda;
19955d0c19d7SBarry Smith   const PetscInt *irow,*icol;
199687828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
19970754003eSLois Curfman McInnes   Mat            newmat;
19980754003eSLois Curfman McInnes 
19993a40ed3dSBarry Smith   PetscFunctionBegin;
200078b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
200178b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
2002e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
2003e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
20040754003eSLois Curfman McInnes 
2005182d2002SSatish Balay   /* Check submatrixcall */
2006182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
200713f74950SBarry Smith     PetscInt n_cols,n_rows;
2008182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
200921a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2010f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
2011c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
201221a2c019SBarry Smith     }
2013182d2002SSatish Balay     newmat = *B;
2014182d2002SSatish Balay   } else {
20150754003eSLois Curfman McInnes     /* Create and fill new matrix */
2016ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2017f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
20187adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
20190298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
2020182d2002SSatish Balay   }
2021182d2002SSatish Balay 
2022182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
2023ca15aa20SStefano Zampini   ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr);
2024ca15aa20SStefano Zampini   ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr);
2025182d2002SSatish Balay   for (i=0; i<ncols; i++) {
20266de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2027ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2028ca15aa20SStefano Zampini     bv += blda;
20290754003eSLois Curfman McInnes   }
2030ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr);
2031182d2002SSatish Balay 
2032182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
20336d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20346d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20350754003eSLois Curfman McInnes 
20360754003eSLois Curfman McInnes   /* Free work space */
203778b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
203878b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
2039182d2002SSatish Balay   *B   = newmat;
20403a40ed3dSBarry Smith   PetscFunctionReturn(0);
20410754003eSLois Curfman McInnes }
20420754003eSLois Curfman McInnes 
20437dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2044905e6a2fSBarry Smith {
20456849ba73SBarry Smith   PetscErrorCode ierr;
204613f74950SBarry Smith   PetscInt       i;
2047905e6a2fSBarry Smith 
20483a40ed3dSBarry Smith   PetscFunctionBegin;
2049905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
2050df750dc8SHong Zhang     ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr);
2051905e6a2fSBarry Smith   }
2052905e6a2fSBarry Smith 
2053905e6a2fSBarry Smith   for (i=0; i<n; i++) {
20547dae84e0SHong Zhang     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr);
2055905e6a2fSBarry Smith   }
20563a40ed3dSBarry Smith   PetscFunctionReturn(0);
2057905e6a2fSBarry Smith }
2058905e6a2fSBarry Smith 
2059e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2060c0aa2d19SHong Zhang {
2061c0aa2d19SHong Zhang   PetscFunctionBegin;
2062c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2063c0aa2d19SHong Zhang }
2064c0aa2d19SHong Zhang 
2065e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2066c0aa2d19SHong Zhang {
2067c0aa2d19SHong Zhang   PetscFunctionBegin;
2068c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2069c0aa2d19SHong Zhang }
2070c0aa2d19SHong Zhang 
2071e0877f53SBarry Smith static PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
20724b0e389bSBarry Smith {
20734b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
20746849ba73SBarry Smith   PetscErrorCode    ierr;
2075ca15aa20SStefano Zampini   const PetscScalar *va;
2076ca15aa20SStefano Zampini   PetscScalar       *vb;
2077d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
20783a40ed3dSBarry Smith 
20793a40ed3dSBarry Smith   PetscFunctionBegin;
208033f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
208133f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
2082cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
20833a40ed3dSBarry Smith     PetscFunctionReturn(0);
20843a40ed3dSBarry Smith   }
2085e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
2086ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr);
2087ca15aa20SStefano Zampini   ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr);
2088a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
20890dbb7854Svictorle     for (j=0; j<n; j++) {
2090ca15aa20SStefano Zampini       ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr);
2091a5ce6ee0Svictorle     }
2092a5ce6ee0Svictorle   } else {
2093ca15aa20SStefano Zampini     ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2094a5ce6ee0Svictorle   }
2095ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr);
2096ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr);
2097ca15aa20SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2098ca15aa20SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2099273d9f13SBarry Smith   PetscFunctionReturn(0);
2100273d9f13SBarry Smith }
2101273d9f13SBarry Smith 
2102e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
2103273d9f13SBarry Smith {
2104dfbe8321SBarry Smith   PetscErrorCode ierr;
2105273d9f13SBarry Smith 
2106273d9f13SBarry Smith   PetscFunctionBegin;
210718992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
210818992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
210918992e5dSStefano Zampini   if (!A->preallocated) {
2110273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr);
211118992e5dSStefano Zampini   }
21123a40ed3dSBarry Smith   PetscFunctionReturn(0);
21134b0e389bSBarry Smith }
21144b0e389bSBarry Smith 
2115ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2116ba337c44SJed Brown {
2117ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2118ca15aa20SStefano Zampini   PetscScalar    *aa;
2119ca15aa20SStefano Zampini   PetscErrorCode ierr;
2120ba337c44SJed Brown 
2121ba337c44SJed Brown   PetscFunctionBegin;
2122ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2123ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
2124ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2125ba337c44SJed Brown   PetscFunctionReturn(0);
2126ba337c44SJed Brown }
2127ba337c44SJed Brown 
2128ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2129ba337c44SJed Brown {
2130ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2131ca15aa20SStefano Zampini   PetscScalar    *aa;
2132ca15aa20SStefano Zampini   PetscErrorCode ierr;
2133ba337c44SJed Brown 
2134ba337c44SJed Brown   PetscFunctionBegin;
2135ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2136ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
2137ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2138ba337c44SJed Brown   PetscFunctionReturn(0);
2139ba337c44SJed Brown }
2140ba337c44SJed Brown 
2141ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2142ba337c44SJed Brown {
2143ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2144ca15aa20SStefano Zampini   PetscScalar    *aa;
2145ca15aa20SStefano Zampini   PetscErrorCode ierr;
2146ba337c44SJed Brown 
2147ba337c44SJed Brown   PetscFunctionBegin;
2148ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2149ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
2150ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2151ba337c44SJed Brown   PetscFunctionReturn(0);
2152ba337c44SJed Brown }
2153284134d9SBarry Smith 
2154a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
21554222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2156a9fe9ddaSSatish Balay {
2157ee16a9a1SHong Zhang   PetscErrorCode ierr;
2158d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
21597a3c3d58SStefano Zampini   PetscBool      cisdense;
2160a9fe9ddaSSatish Balay 
2161ee16a9a1SHong Zhang   PetscFunctionBegin;
21624222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
21637a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
21647a3c3d58SStefano Zampini   if (!cisdense) {
21657a3c3d58SStefano Zampini     PetscBool flg;
21667a3c3d58SStefano Zampini 
2167ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
21684222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
21697a3c3d58SStefano Zampini   }
217018992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2171ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2172ee16a9a1SHong Zhang }
2173a9fe9ddaSSatish Balay 
2174a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2175a9fe9ddaSSatish Balay {
2176*6718818eSStefano Zampini   Mat_SeqDense       *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
21770805154bSBarry Smith   PetscBLASInt       m,n,k;
2178ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2179ca15aa20SStefano Zampini   PetscScalar       *cv;
2180a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2181c2916339SPierre Jolivet   PetscErrorCode    ierr;
2182a9fe9ddaSSatish Balay 
2183a9fe9ddaSSatish Balay   PetscFunctionBegin;
21848208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
21858208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2186c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
218749d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2188ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2189ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
2190*6718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2191ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2192ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2193ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2194ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
2195*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2196a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2197a9fe9ddaSSatish Balay }
2198a9fe9ddaSSatish Balay 
21994222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
220069f65d41SStefano Zampini {
220169f65d41SStefano Zampini   PetscErrorCode ierr;
220269f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
22037a3c3d58SStefano Zampini   PetscBool      cisdense;
220469f65d41SStefano Zampini 
220569f65d41SStefano Zampini   PetscFunctionBegin;
22064222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
22077a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
22087a3c3d58SStefano Zampini   if (!cisdense) {
22097a3c3d58SStefano Zampini     PetscBool flg;
22107a3c3d58SStefano Zampini 
2211ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
22124222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
22137a3c3d58SStefano Zampini   }
221418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
221569f65d41SStefano Zampini   PetscFunctionReturn(0);
221669f65d41SStefano Zampini }
221769f65d41SStefano Zampini 
221869f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
221969f65d41SStefano Zampini {
222069f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
222169f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
222269f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
2223*6718818eSStefano Zampini   const PetscScalar *av,*bv;
2224*6718818eSStefano Zampini   PetscScalar       *cv;
222569f65d41SStefano Zampini   PetscBLASInt      m,n,k;
222669f65d41SStefano Zampini   PetscScalar       _DOne=1.0,_DZero=0.0;
222769f65d41SStefano Zampini   PetscErrorCode    ierr;
222869f65d41SStefano Zampini 
222969f65d41SStefano Zampini   PetscFunctionBegin;
223049d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
223149d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
223269f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
223349d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2234*6718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2235*6718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
2236*6718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2237*6718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2238*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2239*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
2240*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2241ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
224269f65d41SStefano Zampini   PetscFunctionReturn(0);
224369f65d41SStefano Zampini }
224469f65d41SStefano Zampini 
22454222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2246a9fe9ddaSSatish Balay {
2247ee16a9a1SHong Zhang   PetscErrorCode ierr;
2248d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
22497a3c3d58SStefano Zampini   PetscBool      cisdense;
2250a9fe9ddaSSatish Balay 
2251ee16a9a1SHong Zhang   PetscFunctionBegin;
22524222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
22537a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
22547a3c3d58SStefano Zampini   if (!cisdense) {
22557a3c3d58SStefano Zampini     PetscBool flg;
22567a3c3d58SStefano Zampini 
2257ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
22584222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
22597a3c3d58SStefano Zampini   }
226018992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2261ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2262ee16a9a1SHong Zhang }
2263a9fe9ddaSSatish Balay 
226475648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2265a9fe9ddaSSatish Balay {
2266a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2267a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
2268a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
2269*6718818eSStefano Zampini   const PetscScalar *av,*bv;
2270*6718818eSStefano Zampini   PetscScalar       *cv;
22710805154bSBarry Smith   PetscBLASInt      m,n,k;
2272a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2273c5df96a5SBarry Smith   PetscErrorCode    ierr;
2274a9fe9ddaSSatish Balay 
2275a9fe9ddaSSatish Balay   PetscFunctionBegin;
22768208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
22778208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2278c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
227949d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2280*6718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2281*6718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
2282*6718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2283*6718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2284*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2285*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
2286*6718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2287ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2288a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2289a9fe9ddaSSatish Balay }
2290985db425SBarry Smith 
22914222ddf1SHong Zhang /* ----------------------------------------------- */
22924222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
22934222ddf1SHong Zhang {
22944222ddf1SHong Zhang   PetscFunctionBegin;
22954222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
22964222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
22974222ddf1SHong Zhang   PetscFunctionReturn(0);
22984222ddf1SHong Zhang }
22994222ddf1SHong Zhang 
23004222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
23014222ddf1SHong Zhang {
23024222ddf1SHong Zhang   PetscFunctionBegin;
23034222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
23044222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
23054222ddf1SHong Zhang   PetscFunctionReturn(0);
23064222ddf1SHong Zhang }
23074222ddf1SHong Zhang 
23084222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
23094222ddf1SHong Zhang {
23104222ddf1SHong Zhang   PetscFunctionBegin;
23114222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
23124222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
23134222ddf1SHong Zhang   PetscFunctionReturn(0);
23144222ddf1SHong Zhang }
23154222ddf1SHong Zhang 
23164222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
23174222ddf1SHong Zhang {
23184222ddf1SHong Zhang   PetscErrorCode ierr;
23194222ddf1SHong Zhang   Mat_Product    *product = C->product;
23204222ddf1SHong Zhang 
23214222ddf1SHong Zhang   PetscFunctionBegin;
23224222ddf1SHong Zhang   switch (product->type) {
23234222ddf1SHong Zhang   case MATPRODUCT_AB:
23244222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr);
23254222ddf1SHong Zhang     break;
23264222ddf1SHong Zhang   case MATPRODUCT_AtB:
23274222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr);
23284222ddf1SHong Zhang     break;
23294222ddf1SHong Zhang   case MATPRODUCT_ABt:
23304222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr);
23314222ddf1SHong Zhang     break;
2332*6718818eSStefano Zampini   default:
23334222ddf1SHong Zhang     break;
23344222ddf1SHong Zhang   }
23354222ddf1SHong Zhang   PetscFunctionReturn(0);
23364222ddf1SHong Zhang }
23374222ddf1SHong Zhang /* ----------------------------------------------- */
23384222ddf1SHong Zhang 
2339e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2340985db425SBarry Smith {
2341985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2342985db425SBarry Smith   PetscErrorCode     ierr;
2343d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2344985db425SBarry Smith   PetscScalar        *x;
2345ca15aa20SStefano Zampini   const PetscScalar *aa;
2346985db425SBarry Smith 
2347985db425SBarry Smith   PetscFunctionBegin;
2348e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2349985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2350985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2351ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2352e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2353985db425SBarry Smith   for (i=0; i<m; i++) {
2354985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2355985db425SBarry Smith     for (j=1; j<n; j++) {
2356ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2357985db425SBarry Smith     }
2358985db425SBarry Smith   }
2359ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2360985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2361985db425SBarry Smith   PetscFunctionReturn(0);
2362985db425SBarry Smith }
2363985db425SBarry Smith 
2364e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2365985db425SBarry Smith {
2366985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2367985db425SBarry Smith   PetscErrorCode    ierr;
2368d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2369985db425SBarry Smith   PetscScalar       *x;
2370985db425SBarry Smith   PetscReal         atmp;
2371ca15aa20SStefano Zampini   const PetscScalar *aa;
2372985db425SBarry Smith 
2373985db425SBarry Smith   PetscFunctionBegin;
2374e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2375985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2376985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2377ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2378e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2379985db425SBarry Smith   for (i=0; i<m; i++) {
23809189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2381985db425SBarry Smith     for (j=1; j<n; j++) {
2382ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2383985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2384985db425SBarry Smith     }
2385985db425SBarry Smith   }
2386ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2387985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2388985db425SBarry Smith   PetscFunctionReturn(0);
2389985db425SBarry Smith }
2390985db425SBarry Smith 
2391e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2392985db425SBarry Smith {
2393985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2394985db425SBarry Smith   PetscErrorCode    ierr;
2395d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2396985db425SBarry Smith   PetscScalar       *x;
2397ca15aa20SStefano Zampini   const PetscScalar *aa;
2398985db425SBarry Smith 
2399985db425SBarry Smith   PetscFunctionBegin;
2400e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2401ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2402985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2403985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2404e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2405985db425SBarry Smith   for (i=0; i<m; i++) {
2406985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2407985db425SBarry Smith     for (j=1; j<n; j++) {
2408ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2409985db425SBarry Smith     }
2410985db425SBarry Smith   }
2411985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2412ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2413985db425SBarry Smith   PetscFunctionReturn(0);
2414985db425SBarry Smith }
2415985db425SBarry Smith 
2416637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
24178d0534beSBarry Smith {
24188d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
24198d0534beSBarry Smith   PetscErrorCode    ierr;
24208d0534beSBarry Smith   PetscScalar       *x;
2421ca15aa20SStefano Zampini   const PetscScalar *aa;
24228d0534beSBarry Smith 
24238d0534beSBarry Smith   PetscFunctionBegin;
2424e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2425ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
24268d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2427ca15aa20SStefano Zampini   ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr);
24288d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2429ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
24308d0534beSBarry Smith   PetscFunctionReturn(0);
24318d0534beSBarry Smith }
24328d0534beSBarry Smith 
243352c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
24340716a85fSBarry Smith {
24350716a85fSBarry Smith   PetscErrorCode    ierr;
24360716a85fSBarry Smith   PetscInt          i,j,m,n;
24371683a169SBarry Smith   const PetscScalar *a;
24380716a85fSBarry Smith 
24390716a85fSBarry Smith   PetscFunctionBegin;
24400716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2441580bdb30SBarry Smith   ierr = PetscArrayzero(norms,n);CHKERRQ(ierr);
24421683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
24430716a85fSBarry Smith   if (type == NORM_2) {
24440716a85fSBarry Smith     for (i=0; i<n; i++) {
24450716a85fSBarry Smith       for (j=0; j<m; j++) {
24460716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
24470716a85fSBarry Smith       }
24480716a85fSBarry Smith       a += m;
24490716a85fSBarry Smith     }
24500716a85fSBarry Smith   } else if (type == NORM_1) {
24510716a85fSBarry Smith     for (i=0; i<n; i++) {
24520716a85fSBarry Smith       for (j=0; j<m; j++) {
24530716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
24540716a85fSBarry Smith       }
24550716a85fSBarry Smith       a += m;
24560716a85fSBarry Smith     }
24570716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
24580716a85fSBarry Smith     for (i=0; i<n; i++) {
24590716a85fSBarry Smith       for (j=0; j<m; j++) {
24600716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
24610716a85fSBarry Smith       }
24620716a85fSBarry Smith       a += m;
24630716a85fSBarry Smith     }
2464ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
24651683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr);
24660716a85fSBarry Smith   if (type == NORM_2) {
24678f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
24680716a85fSBarry Smith   }
24690716a85fSBarry Smith   PetscFunctionReturn(0);
24700716a85fSBarry Smith }
24710716a85fSBarry Smith 
247273a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
247373a71a0fSBarry Smith {
247473a71a0fSBarry Smith   PetscErrorCode ierr;
247573a71a0fSBarry Smith   PetscScalar    *a;
2476637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
247773a71a0fSBarry Smith 
247873a71a0fSBarry Smith   PetscFunctionBegin;
247973a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
2480637a0070SStefano Zampini   ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr);
24818c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
2482637a0070SStefano Zampini   for (j=0; j<n; j++) {
2483637a0070SStefano Zampini     for (i=0; i<m; i++) {
2484637a0070SStefano Zampini       ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr);
2485637a0070SStefano Zampini     }
248673a71a0fSBarry Smith   }
24878c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
248873a71a0fSBarry Smith   PetscFunctionReturn(0);
248973a71a0fSBarry Smith }
249073a71a0fSBarry Smith 
24913b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
24923b49f96aSBarry Smith {
24933b49f96aSBarry Smith   PetscFunctionBegin;
24943b49f96aSBarry Smith   *missing = PETSC_FALSE;
24953b49f96aSBarry Smith   PetscFunctionReturn(0);
24963b49f96aSBarry Smith }
249773a71a0fSBarry Smith 
2498ca15aa20SStefano Zampini /* vals is not const */
2499af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
250086aefd0dSHong Zhang {
2501ca15aa20SStefano Zampini   PetscErrorCode ierr;
250286aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2503ca15aa20SStefano Zampini   PetscScalar    *v;
250486aefd0dSHong Zhang 
250586aefd0dSHong Zhang   PetscFunctionBegin;
250686aefd0dSHong Zhang   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2507ca15aa20SStefano Zampini   ierr  = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2508ca15aa20SStefano Zampini   *vals = v+col*a->lda;
2509ca15aa20SStefano Zampini   ierr  = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
251086aefd0dSHong Zhang   PetscFunctionReturn(0);
251186aefd0dSHong Zhang }
251286aefd0dSHong Zhang 
2513af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
251486aefd0dSHong Zhang {
251586aefd0dSHong Zhang   PetscFunctionBegin;
251686aefd0dSHong Zhang   *vals = 0; /* user cannot accidently use the array later */
251786aefd0dSHong Zhang   PetscFunctionReturn(0);
251886aefd0dSHong Zhang }
2519abc3b08eSStefano Zampini 
2520289bc588SBarry Smith /* -------------------------------------------------------------------*/
2521a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2522905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2523905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2524905e6a2fSBarry Smith                                         MatMult_SeqDense,
252597304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
25267c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
25277c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2528db4efbfdSBarry Smith                                         0,
2529db4efbfdSBarry Smith                                         0,
2530db4efbfdSBarry Smith                                         0,
2531db4efbfdSBarry Smith                                 /* 10*/ 0,
2532905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2533905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
253441f059aeSBarry Smith                                         MatSOR_SeqDense,
2535ec8511deSBarry Smith                                         MatTranspose_SeqDense,
253697304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2537905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2538905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2539905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2540905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2541c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2542c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2543905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2544905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2545d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2546db4efbfdSBarry Smith                                         0,
2547db4efbfdSBarry Smith                                         0,
2548db4efbfdSBarry Smith                                         0,
2549db4efbfdSBarry Smith                                         0,
25504994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2551273d9f13SBarry Smith                                         0,
2552905e6a2fSBarry Smith                                         0,
255373a71a0fSBarry Smith                                         0,
255473a71a0fSBarry Smith                                         0,
2555d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2556a5ae1ecdSBarry Smith                                         0,
2557a5ae1ecdSBarry Smith                                         0,
2558a5ae1ecdSBarry Smith                                         0,
2559a5ae1ecdSBarry Smith                                         0,
2560d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
25617dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2562a5ae1ecdSBarry Smith                                         0,
25634b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2564a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2565d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2566a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
25677d68702bSBarry Smith                                         MatShift_Basic,
2568a5ae1ecdSBarry Smith                                         0,
25693f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
257073a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2571a5ae1ecdSBarry Smith                                         0,
2572a5ae1ecdSBarry Smith                                         0,
2573a5ae1ecdSBarry Smith                                         0,
2574a5ae1ecdSBarry Smith                                         0,
2575d519adbfSMatthew Knepley                                 /* 54*/ 0,
2576a5ae1ecdSBarry Smith                                         0,
2577a5ae1ecdSBarry Smith                                         0,
2578a5ae1ecdSBarry Smith                                         0,
2579a5ae1ecdSBarry Smith                                         0,
2580d519adbfSMatthew Knepley                                 /* 59*/ 0,
2581e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2582e03a110bSBarry Smith                                         MatView_SeqDense,
2583357abbc8SBarry Smith                                         0,
258497304618SKris Buschelman                                         0,
2585d519adbfSMatthew Knepley                                 /* 64*/ 0,
258697304618SKris Buschelman                                         0,
258797304618SKris Buschelman                                         0,
258897304618SKris Buschelman                                         0,
258997304618SKris Buschelman                                         0,
2590d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
259197304618SKris Buschelman                                         0,
259297304618SKris Buschelman                                         0,
259397304618SKris Buschelman                                         0,
259497304618SKris Buschelman                                         0,
2595d519adbfSMatthew Knepley                                 /* 74*/ 0,
259697304618SKris Buschelman                                         0,
259797304618SKris Buschelman                                         0,
259897304618SKris Buschelman                                         0,
259997304618SKris Buschelman                                         0,
2600d519adbfSMatthew Knepley                                 /* 79*/ 0,
260197304618SKris Buschelman                                         0,
260297304618SKris Buschelman                                         0,
260397304618SKris Buschelman                                         0,
26045bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2605637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
26061cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2607865e5f61SKris Buschelman                                         0,
2608865e5f61SKris Buschelman                                         0,
2609865e5f61SKris Buschelman                                         0,
26104222ddf1SHong Zhang                                 /* 89*/ 0,
26114222ddf1SHong Zhang                                         0,
2612a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
26134222ddf1SHong Zhang                                         0,
26144222ddf1SHong Zhang                                         0,
26154222ddf1SHong Zhang                                 /* 94*/ 0,
26164222ddf1SHong Zhang                                         0,
26174222ddf1SHong Zhang                                         0,
261869f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2619284134d9SBarry Smith                                         0,
26204222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2621284134d9SBarry Smith                                         0,
2622284134d9SBarry Smith                                         0,
2623ba337c44SJed Brown                                         MatConjugate_SeqDense,
2624f73d5cc4SBarry Smith                                         0,
2625ba337c44SJed Brown                                 /*104*/ 0,
2626ba337c44SJed Brown                                         MatRealPart_SeqDense,
2627ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
2628985db425SBarry Smith                                         0,
2629985db425SBarry Smith                                         0,
26308208b9aeSStefano Zampini                                 /*109*/ 0,
2631985db425SBarry Smith                                         0,
26328d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
2633aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
26343b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
2635aabbc4fbSShri Abhyankar                                 /*114*/ 0,
2636aabbc4fbSShri Abhyankar                                         0,
2637aabbc4fbSShri Abhyankar                                         0,
2638aabbc4fbSShri Abhyankar                                         0,
2639aabbc4fbSShri Abhyankar                                         0,
2640aabbc4fbSShri Abhyankar                                 /*119*/ 0,
2641aabbc4fbSShri Abhyankar                                         0,
2642aabbc4fbSShri Abhyankar                                         0,
26430716a85fSBarry Smith                                         0,
26440716a85fSBarry Smith                                         0,
26450716a85fSBarry Smith                                 /*124*/ 0,
26465df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
26475df89d91SHong Zhang                                         0,
26485df89d91SHong Zhang                                         0,
26495df89d91SHong Zhang                                         0,
26505df89d91SHong Zhang                                 /*129*/ 0,
26514222ddf1SHong Zhang                                         0,
26524222ddf1SHong Zhang                                         0,
265375648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
26543964eb88SJed Brown                                         0,
26553964eb88SJed Brown                                 /*134*/ 0,
26563964eb88SJed Brown                                         0,
26573964eb88SJed Brown                                         0,
26583964eb88SJed Brown                                         0,
26593964eb88SJed Brown                                         0,
26603964eb88SJed Brown                                 /*139*/ 0,
2661f9426fe0SMark Adams                                         0,
2662d528f656SJakub Kruzik                                         0,
2663d528f656SJakub Kruzik                                         0,
2664d528f656SJakub Kruzik                                         0,
26654222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
26664222ddf1SHong Zhang                                 /*145*/ 0,
26674222ddf1SHong Zhang                                         0,
26684222ddf1SHong Zhang                                         0
2669985db425SBarry Smith };
267090ace30eSBarry Smith 
26714b828684SBarry Smith /*@C
2672fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
2673d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
2674d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
2675289bc588SBarry Smith 
2676d083f849SBarry Smith    Collective
2677db81eaa0SLois Curfman McInnes 
267820563c6bSBarry Smith    Input Parameters:
2679db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
26800c775827SLois Curfman McInnes .  m - number of rows
268118f449edSLois Curfman McInnes .  n - number of columns
26820298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
2683dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
268420563c6bSBarry Smith 
268520563c6bSBarry Smith    Output Parameter:
268644cd7ae7SLois Curfman McInnes .  A - the matrix
268720563c6bSBarry Smith 
2688b259b22eSLois Curfman McInnes    Notes:
268918f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
269018f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
26910298fd71SBarry Smith    set data=NULL.
269218f449edSLois Curfman McInnes 
2693027ccd11SLois Curfman McInnes    Level: intermediate
2694027ccd11SLois Curfman McInnes 
269569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
269620563c6bSBarry Smith @*/
26977087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
2698289bc588SBarry Smith {
2699dfbe8321SBarry Smith   PetscErrorCode ierr;
27003b2fbd54SBarry Smith 
27013a40ed3dSBarry Smith   PetscFunctionBegin;
2702f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2703f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2704273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2705273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
2706273d9f13SBarry Smith   PetscFunctionReturn(0);
2707273d9f13SBarry Smith }
2708273d9f13SBarry Smith 
2709273d9f13SBarry Smith /*@C
2710273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
2711273d9f13SBarry Smith 
2712d083f849SBarry Smith    Collective
2713273d9f13SBarry Smith 
2714273d9f13SBarry Smith    Input Parameters:
27151c4f3114SJed Brown +  B - the matrix
27160298fd71SBarry Smith -  data - the array (or NULL)
2717273d9f13SBarry Smith 
2718273d9f13SBarry Smith    Notes:
2719273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
2720273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
2721284134d9SBarry Smith    need not call this routine.
2722273d9f13SBarry Smith 
2723273d9f13SBarry Smith    Level: intermediate
2724273d9f13SBarry Smith 
2725ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
2726867c911aSBarry Smith 
2727273d9f13SBarry Smith @*/
27287087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
2729273d9f13SBarry Smith {
27304ac538c5SBarry Smith   PetscErrorCode ierr;
2731a23d5eceSKris Buschelman 
2732a23d5eceSKris Buschelman   PetscFunctionBegin;
2733d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
27344ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
2735a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2736a23d5eceSKris Buschelman }
2737a23d5eceSKris Buschelman 
27387087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
2739a23d5eceSKris Buschelman {
2740ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
2741dfbe8321SBarry Smith   PetscErrorCode ierr;
2742273d9f13SBarry Smith 
2743273d9f13SBarry Smith   PetscFunctionBegin;
2744273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2745a868139aSShri Abhyankar 
274634ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
274734ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
274834ef9618SShri Abhyankar 
2749ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
275086d161a7SShri Abhyankar 
2751ad16ce7aSStefano Zampini   ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr);
27529e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
27539e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2754ad16ce7aSStefano Zampini     ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr);
2755ad16ce7aSStefano Zampini     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
27562205254eSKarl Rupp 
27579e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
2758273d9f13SBarry Smith   } else { /* user-allocated storage */
27599e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2760273d9f13SBarry Smith     b->v          = data;
2761273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
2762273d9f13SBarry Smith   }
27630450473dSBarry Smith   B->assembled = PETSC_TRUE;
2764273d9f13SBarry Smith   PetscFunctionReturn(0);
2765273d9f13SBarry Smith }
2766273d9f13SBarry Smith 
276765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2768cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
27698baccfbdSHong Zhang {
2770d77f618aSHong Zhang   Mat               mat_elemental;
2771d77f618aSHong Zhang   PetscErrorCode    ierr;
27721683a169SBarry Smith   const PetscScalar *array;
27731683a169SBarry Smith   PetscScalar       *v_colwise;
2774d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
2775d77f618aSHong Zhang 
27768baccfbdSHong Zhang   PetscFunctionBegin;
2777d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
27781683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr);
2779d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
2780d77f618aSHong Zhang   k = 0;
2781d77f618aSHong Zhang   for (j=0; j<N; j++) {
2782d77f618aSHong Zhang     cols[j] = j;
2783d77f618aSHong Zhang     for (i=0; i<M; i++) {
2784d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
2785d77f618aSHong Zhang     }
2786d77f618aSHong Zhang   }
2787d77f618aSHong Zhang   for (i=0; i<M; i++) {
2788d77f618aSHong Zhang     rows[i] = i;
2789d77f618aSHong Zhang   }
27901683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr);
2791d77f618aSHong Zhang 
2792d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
2793d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
2794d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
2795d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
2796d77f618aSHong Zhang 
2797d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
2798d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
2799d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2800d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2801d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
2802d77f618aSHong Zhang 
2803511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
280428be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
2805d77f618aSHong Zhang   } else {
2806d77f618aSHong Zhang     *newmat = mat_elemental;
2807d77f618aSHong Zhang   }
28088baccfbdSHong Zhang   PetscFunctionReturn(0);
28098baccfbdSHong Zhang }
281065b80a83SHong Zhang #endif
28118baccfbdSHong Zhang 
2812ad16ce7aSStefano Zampini static PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
28131b807ce4Svictorle {
28141b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
281521a2c019SBarry Smith 
28161b807ce4Svictorle   PetscFunctionBegin;
2817e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
28181b807ce4Svictorle   b->lda = lda;
28191b807ce4Svictorle   PetscFunctionReturn(0);
28201b807ce4Svictorle }
28211b807ce4Svictorle 
2822d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
2823d528f656SJakub Kruzik {
2824d528f656SJakub Kruzik   PetscErrorCode ierr;
2825d528f656SJakub Kruzik   PetscMPIInt    size;
2826d528f656SJakub Kruzik 
2827d528f656SJakub Kruzik   PetscFunctionBegin;
2828d528f656SJakub Kruzik   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2829d528f656SJakub Kruzik   if (size == 1) {
2830d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
2831d528f656SJakub Kruzik       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
2832d528f656SJakub Kruzik     } else {
2833d528f656SJakub Kruzik       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
2834d528f656SJakub Kruzik     }
2835d528f656SJakub Kruzik   } else {
2836d528f656SJakub Kruzik     ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
2837d528f656SJakub Kruzik   }
2838d528f656SJakub Kruzik   PetscFunctionReturn(0);
2839d528f656SJakub Kruzik }
2840d528f656SJakub Kruzik 
28416947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
28426947451fSStefano Zampini {
28436947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28446947451fSStefano Zampini   PetscErrorCode ierr;
28456947451fSStefano Zampini 
28466947451fSStefano Zampini   PetscFunctionBegin;
28476947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
28486947451fSStefano Zampini   if (!a->cvec) {
28496947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
28506947451fSStefano Zampini   }
28516947451fSStefano Zampini   a->vecinuse = col + 1;
28526947451fSStefano Zampini   ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
28536947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
28546947451fSStefano Zampini   *v   = a->cvec;
28556947451fSStefano Zampini   PetscFunctionReturn(0);
28566947451fSStefano Zampini }
28576947451fSStefano Zampini 
28586947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
28596947451fSStefano Zampini {
28606947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28616947451fSStefano Zampini   PetscErrorCode ierr;
28626947451fSStefano Zampini 
28636947451fSStefano Zampini   PetscFunctionBegin;
28646947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
28656947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
28666947451fSStefano Zampini   a->vecinuse = 0;
28676947451fSStefano Zampini   ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
28686947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
28696947451fSStefano Zampini   *v   = NULL;
28706947451fSStefano Zampini   PetscFunctionReturn(0);
28716947451fSStefano Zampini }
28726947451fSStefano Zampini 
28736947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
28746947451fSStefano Zampini {
28756947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28766947451fSStefano Zampini   PetscErrorCode ierr;
28776947451fSStefano Zampini 
28786947451fSStefano Zampini   PetscFunctionBegin;
28796947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
28806947451fSStefano Zampini   if (!a->cvec) {
28816947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
28826947451fSStefano Zampini   }
28836947451fSStefano Zampini   a->vecinuse = col + 1;
28846947451fSStefano Zampini   ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
28856947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
28866947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
28876947451fSStefano Zampini   *v   = a->cvec;
28886947451fSStefano Zampini   PetscFunctionReturn(0);
28896947451fSStefano Zampini }
28906947451fSStefano Zampini 
28916947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
28926947451fSStefano Zampini {
28936947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28946947451fSStefano Zampini   PetscErrorCode ierr;
28956947451fSStefano Zampini 
28966947451fSStefano Zampini   PetscFunctionBegin;
28976947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
28986947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
28996947451fSStefano Zampini   a->vecinuse = 0;
29006947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
29016947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
29026947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
29036947451fSStefano Zampini   *v   = NULL;
29046947451fSStefano Zampini   PetscFunctionReturn(0);
29056947451fSStefano Zampini }
29066947451fSStefano Zampini 
29076947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
29086947451fSStefano Zampini {
29096947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29106947451fSStefano Zampini   PetscErrorCode ierr;
29116947451fSStefano Zampini 
29126947451fSStefano Zampini   PetscFunctionBegin;
29136947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
29146947451fSStefano Zampini   if (!a->cvec) {
29156947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
29166947451fSStefano Zampini   }
29176947451fSStefano Zampini   a->vecinuse = col + 1;
29186947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
29196947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
29206947451fSStefano Zampini   *v   = a->cvec;
29216947451fSStefano Zampini   PetscFunctionReturn(0);
29226947451fSStefano Zampini }
29236947451fSStefano Zampini 
29246947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
29256947451fSStefano Zampini {
29266947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29276947451fSStefano Zampini   PetscErrorCode ierr;
29286947451fSStefano Zampini 
29296947451fSStefano Zampini   PetscFunctionBegin;
29306947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
29316947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
29326947451fSStefano Zampini   a->vecinuse = 0;
29336947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
29346947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
29356947451fSStefano Zampini   *v   = NULL;
29366947451fSStefano Zampini   PetscFunctionReturn(0);
29376947451fSStefano Zampini }
29386947451fSStefano Zampini 
29390bad9183SKris Buschelman /*MC
2940fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
29410bad9183SKris Buschelman 
29420bad9183SKris Buschelman    Options Database Keys:
29430bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
29440bad9183SKris Buschelman 
29450bad9183SKris Buschelman   Level: beginner
29460bad9183SKris Buschelman 
294789665df3SBarry Smith .seealso: MatCreateSeqDense()
294889665df3SBarry Smith 
29490bad9183SKris Buschelman M*/
2950ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
2951273d9f13SBarry Smith {
2952273d9f13SBarry Smith   Mat_SeqDense   *b;
2953dfbe8321SBarry Smith   PetscErrorCode ierr;
29547c334f02SBarry Smith   PetscMPIInt    size;
2955273d9f13SBarry Smith 
2956273d9f13SBarry Smith   PetscFunctionBegin;
2957ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2958e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
295955659b69SBarry Smith 
2960b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2961549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
296244cd7ae7SLois Curfman McInnes   B->data = (void*)b;
296318f449edSLois Curfman McInnes 
2964273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
29654e220ebcSLois Curfman McInnes 
296649a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr);
2967ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr);
2968bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
29698572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
2970d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
2971d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
2972d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr);
29738572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
2974715b7558SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
29756947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
29766947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
2977bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
29788baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
29798baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
29808baccfbdSHong Zhang #endif
29812bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
29822bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr);
29834222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
29844222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
2985637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
29864222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaijcusparse_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
29872bf066beSStefano Zampini #endif
2988bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
29894222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
29904222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
29914222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
29924222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
299396e6d5c4SRichard Tran Mills 
2994af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr);
2995af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr);
29966947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr);
29976947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr);
29986947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr);
29996947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr);
30006947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr);
30016947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr);
300217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
30033a40ed3dSBarry Smith   PetscFunctionReturn(0);
3004289bc588SBarry Smith }
300586aefd0dSHong Zhang 
300686aefd0dSHong Zhang /*@C
3007af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
300886aefd0dSHong Zhang 
300986aefd0dSHong Zhang    Not Collective
301086aefd0dSHong Zhang 
301186aefd0dSHong Zhang    Input Parameter:
301286aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
301386aefd0dSHong Zhang -  col - column index
301486aefd0dSHong Zhang 
301586aefd0dSHong Zhang    Output Parameter:
301686aefd0dSHong Zhang .  vals - pointer to the data
301786aefd0dSHong Zhang 
301886aefd0dSHong Zhang    Level: intermediate
301986aefd0dSHong Zhang 
302086aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
302186aefd0dSHong Zhang @*/
302286aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
302386aefd0dSHong Zhang {
302486aefd0dSHong Zhang   PetscErrorCode ierr;
302586aefd0dSHong Zhang 
302686aefd0dSHong Zhang   PetscFunctionBegin;
3027d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3028d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3029d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
303086aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr);
303186aefd0dSHong Zhang   PetscFunctionReturn(0);
303286aefd0dSHong Zhang }
303386aefd0dSHong Zhang 
303486aefd0dSHong Zhang /*@C
303586aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
303686aefd0dSHong Zhang 
303786aefd0dSHong Zhang    Not Collective
303886aefd0dSHong Zhang 
303986aefd0dSHong Zhang    Input Parameter:
304086aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
304186aefd0dSHong Zhang 
304286aefd0dSHong Zhang    Output Parameter:
304386aefd0dSHong Zhang .  vals - pointer to the data
304486aefd0dSHong Zhang 
304586aefd0dSHong Zhang    Level: intermediate
304686aefd0dSHong Zhang 
304786aefd0dSHong Zhang .seealso: MatDenseGetColumn()
304886aefd0dSHong Zhang @*/
304986aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
305086aefd0dSHong Zhang {
305186aefd0dSHong Zhang   PetscErrorCode ierr;
305286aefd0dSHong Zhang 
305386aefd0dSHong Zhang   PetscFunctionBegin;
3054d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3055d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
305686aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr);
305786aefd0dSHong Zhang   PetscFunctionReturn(0);
305886aefd0dSHong Zhang }
30596947451fSStefano Zampini 
30606947451fSStefano Zampini /*@C
30616947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
30626947451fSStefano Zampini 
30636947451fSStefano Zampini    Collective
30646947451fSStefano Zampini 
30656947451fSStefano Zampini    Input Parameter:
30666947451fSStefano Zampini +  mat - the Mat object
30676947451fSStefano Zampini -  col - the column index
30686947451fSStefano Zampini 
30696947451fSStefano Zampini    Output Parameter:
30706947451fSStefano Zampini .  v - the vector
30716947451fSStefano Zampini 
30726947451fSStefano Zampini    Notes:
30736947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
30746947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
30756947451fSStefano Zampini 
30766947451fSStefano Zampini    Level: intermediate
30776947451fSStefano Zampini 
30786947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
30796947451fSStefano Zampini @*/
30806947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
30816947451fSStefano Zampini {
30826947451fSStefano Zampini   PetscErrorCode ierr;
30836947451fSStefano Zampini 
30846947451fSStefano Zampini   PetscFunctionBegin;
30856947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
30866947451fSStefano Zampini   PetscValidType(A,1);
30876947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
30886947451fSStefano Zampini   PetscValidPointer(v,3);
30896947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
30906947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
30916947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
30926947451fSStefano Zampini   PetscFunctionReturn(0);
30936947451fSStefano Zampini }
30946947451fSStefano Zampini 
30956947451fSStefano Zampini /*@C
30966947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
30976947451fSStefano Zampini 
30986947451fSStefano Zampini    Collective
30996947451fSStefano Zampini 
31006947451fSStefano Zampini    Input Parameter:
31016947451fSStefano Zampini +  mat - the Mat object
31026947451fSStefano Zampini .  col - the column index
31036947451fSStefano Zampini -  v - the Vec object
31046947451fSStefano Zampini 
31056947451fSStefano Zampini    Level: intermediate
31066947451fSStefano Zampini 
31076947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
31086947451fSStefano Zampini @*/
31096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
31106947451fSStefano Zampini {
31116947451fSStefano Zampini   PetscErrorCode ierr;
31126947451fSStefano Zampini 
31136947451fSStefano Zampini   PetscFunctionBegin;
31146947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
31156947451fSStefano Zampini   PetscValidType(A,1);
31166947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
31176947451fSStefano Zampini   PetscValidPointer(v,3);
31186947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
31196947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
31206947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
31216947451fSStefano Zampini   PetscFunctionReturn(0);
31226947451fSStefano Zampini }
31236947451fSStefano Zampini 
31246947451fSStefano Zampini /*@C
31256947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
31266947451fSStefano Zampini 
31276947451fSStefano Zampini    Collective
31286947451fSStefano Zampini 
31296947451fSStefano Zampini    Input Parameter:
31306947451fSStefano Zampini +  mat - the Mat object
31316947451fSStefano Zampini -  col - the column index
31326947451fSStefano Zampini 
31336947451fSStefano Zampini    Output Parameter:
31346947451fSStefano Zampini .  v - the vector
31356947451fSStefano Zampini 
31366947451fSStefano Zampini    Notes:
31376947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
31386947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
31396947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
31406947451fSStefano Zampini 
31416947451fSStefano Zampini    Level: intermediate
31426947451fSStefano Zampini 
31436947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
31446947451fSStefano Zampini @*/
31456947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
31466947451fSStefano Zampini {
31476947451fSStefano Zampini   PetscErrorCode ierr;
31486947451fSStefano Zampini 
31496947451fSStefano Zampini   PetscFunctionBegin;
31506947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
31516947451fSStefano Zampini   PetscValidType(A,1);
31526947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
31536947451fSStefano Zampini   PetscValidPointer(v,3);
31546947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
31556947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
31566947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
31576947451fSStefano Zampini   PetscFunctionReturn(0);
31586947451fSStefano Zampini }
31596947451fSStefano Zampini 
31606947451fSStefano Zampini /*@C
31616947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
31626947451fSStefano Zampini 
31636947451fSStefano Zampini    Collective
31646947451fSStefano Zampini 
31656947451fSStefano Zampini    Input Parameter:
31666947451fSStefano Zampini +  mat - the Mat object
31676947451fSStefano Zampini .  col - the column index
31686947451fSStefano Zampini -  v - the Vec object
31696947451fSStefano Zampini 
31706947451fSStefano Zampini    Level: intermediate
31716947451fSStefano Zampini 
31726947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
31736947451fSStefano Zampini @*/
31746947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
31756947451fSStefano Zampini {
31766947451fSStefano Zampini   PetscErrorCode ierr;
31776947451fSStefano Zampini 
31786947451fSStefano Zampini   PetscFunctionBegin;
31796947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
31806947451fSStefano Zampini   PetscValidType(A,1);
31816947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
31826947451fSStefano Zampini   PetscValidPointer(v,3);
31836947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
31846947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
31856947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
31866947451fSStefano Zampini   PetscFunctionReturn(0);
31876947451fSStefano Zampini }
31886947451fSStefano Zampini 
31896947451fSStefano Zampini /*@C
31906947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
31916947451fSStefano Zampini 
31926947451fSStefano Zampini    Collective
31936947451fSStefano Zampini 
31946947451fSStefano Zampini    Input Parameter:
31956947451fSStefano Zampini +  mat - the Mat object
31966947451fSStefano Zampini -  col - the column index
31976947451fSStefano Zampini 
31986947451fSStefano Zampini    Output Parameter:
31996947451fSStefano Zampini .  v - the vector
32006947451fSStefano Zampini 
32016947451fSStefano Zampini    Notes:
32026947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
32036947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
32046947451fSStefano Zampini 
32056947451fSStefano Zampini    Level: intermediate
32066947451fSStefano Zampini 
32076947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
32086947451fSStefano Zampini @*/
32096947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
32106947451fSStefano Zampini {
32116947451fSStefano Zampini   PetscErrorCode ierr;
32126947451fSStefano Zampini 
32136947451fSStefano Zampini   PetscFunctionBegin;
32146947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32156947451fSStefano Zampini   PetscValidType(A,1);
32166947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
32176947451fSStefano Zampini   PetscValidPointer(v,3);
32186947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
32196947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
32206947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
32216947451fSStefano Zampini   PetscFunctionReturn(0);
32226947451fSStefano Zampini }
32236947451fSStefano Zampini 
32246947451fSStefano Zampini /*@C
32256947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
32266947451fSStefano Zampini 
32276947451fSStefano Zampini    Collective
32286947451fSStefano Zampini 
32296947451fSStefano Zampini    Input Parameter:
32306947451fSStefano Zampini +  mat - the Mat object
32316947451fSStefano Zampini .  col - the column index
32326947451fSStefano Zampini -  v - the Vec object
32336947451fSStefano Zampini 
32346947451fSStefano Zampini    Level: intermediate
32356947451fSStefano Zampini 
32366947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
32376947451fSStefano Zampini @*/
32386947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
32396947451fSStefano Zampini {
32406947451fSStefano Zampini   PetscErrorCode ierr;
32416947451fSStefano Zampini 
32426947451fSStefano Zampini   PetscFunctionBegin;
32436947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32446947451fSStefano Zampini   PetscValidType(A,1);
32456947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
32466947451fSStefano Zampini   PetscValidPointer(v,3);
32476947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
32486947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
32496947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
32506947451fSStefano Zampini   PetscFunctionReturn(0);
32516947451fSStefano Zampini }
3252