xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 7c17b2cf1529c5c7fd3cb384b9e20a602d8843c8)
15392566eSBarry Smith 
25392566eSBarry Smith 
3cb512458SBarry Smith #ifndef lint
4*7c17b2cfSLois Curfman McInnes static char vcid[] = "$Id: dense.c,v 1.43 1995/07/09 23:16:42 bsmith Exp curfman $";
5cb512458SBarry Smith #endif
6289bc588SBarry Smith 
7289bc588SBarry Smith /*
8289bc588SBarry Smith     Standard Fortran style matrices
9289bc588SBarry Smith */
10289bc588SBarry Smith #include "ptscimpl.h"
11289bc588SBarry Smith #include "plapack.h"
12289bc588SBarry Smith #include "matimpl.h"
13289bc588SBarry Smith #include "math.h"
14289bc588SBarry Smith #include "vec/vecimpl.h"
1520e1a0d4SLois Curfman McInnes #include "pviewer.h"
16289bc588SBarry Smith 
17289bc588SBarry Smith typedef struct {
18289bc588SBarry Smith   Scalar *v;
19289bc588SBarry Smith   int    roworiented;
20289bc588SBarry Smith   int    m,n,pad;
21289bc588SBarry Smith   int    *pivots;   /* pivots in LU factorization */
2244a69424SLois Curfman McInnes } Mat_Dense;
23289bc588SBarry Smith 
2420e1a0d4SLois Curfman McInnes static int MatGetInfo_Dense(Mat matin,MatInfoType flag,int *nz,
2520e1a0d4SLois Curfman McInnes                             int *nzalloc,int *mem)
26289bc588SBarry Smith {
2744a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
28289bc588SBarry Smith   int    i,N = mat->m*mat->n,count = 0;
29289bc588SBarry Smith   Scalar *v = mat->v;
30289bc588SBarry Smith   for ( i=0; i<N; i++ ) {if (*v != 0.0) count++; v++;}
31fa9ec3f1SLois Curfman McInnes   *nz = count; *nzalloc = N; *mem = N*sizeof(Scalar);
32fa9ec3f1SLois Curfman McInnes   return 0;
33289bc588SBarry Smith }
34289bc588SBarry Smith 
35289bc588SBarry Smith /* ---------------------------------------------------------------*/
36289bc588SBarry Smith /* COMMENT: I have chosen to hide column permutation in the pivots,
37289bc588SBarry Smith    rather than put it in the Mat->col slot.*/
3849d8b64dSBarry Smith static int MatLUFactor_Dense(Mat matin,IS row,IS col,double f)
39289bc588SBarry Smith {
4044a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
416abc6512SBarry Smith   int    info;
42289bc588SBarry Smith   if (!mat->pivots) {
4378b31e54SBarry Smith     mat->pivots = (int *) PETSCMALLOC( mat->m*sizeof(int) );
4478b31e54SBarry Smith     CHKPTRQ(mat->pivots);
45289bc588SBarry Smith   }
46289bc588SBarry Smith   LAgetrf_(&mat->m,&mat->n,mat->v,&mat->m,mat->pivots,&info);
4778b31e54SBarry Smith   if (info) SETERRQ(1,"Bad LU factorization");
48289bc588SBarry Smith   matin->factor = FACTOR_LU;
49289bc588SBarry Smith   return 0;
50289bc588SBarry Smith }
5149d8b64dSBarry Smith static int MatLUFactorSymbolic_Dense(Mat matin,IS row,IS col,double f,
5249d8b64dSBarry Smith                                      Mat *fact)
53289bc588SBarry Smith {
54289bc588SBarry Smith   int ierr;
5578b31e54SBarry Smith   if ((ierr = MatConvert(matin,MATSAME,fact))) SETERRQ(ierr,0);
56289bc588SBarry Smith   return 0;
57289bc588SBarry Smith }
5844a69424SLois Curfman McInnes static int MatLUFactorNumeric_Dense(Mat matin,Mat *fact)
59289bc588SBarry Smith {
6049d8b64dSBarry Smith   return MatLUFactor(*fact,0,0,1.0);
61289bc588SBarry Smith }
6249d8b64dSBarry Smith static int MatCholeskyFactorSymbolic_Dense(Mat matin,IS row,double f,Mat *fact)
63289bc588SBarry Smith {
64289bc588SBarry Smith   int ierr;
6578b31e54SBarry Smith   if ((ierr = MatConvert(matin,MATSAME,fact))) SETERRQ(ierr,0);
66289bc588SBarry Smith   return 0;
67289bc588SBarry Smith }
6846fc4a8fSLois Curfman McInnes static int MatCholeskyFactorNumeric_Dense(Mat matin,Mat *fact)
69289bc588SBarry Smith {
7049d8b64dSBarry Smith   return MatCholeskyFactor(*fact,0,1.0);
71289bc588SBarry Smith }
7249d8b64dSBarry Smith static int MatCholeskyFactor_Dense(Mat matin,IS perm,double f)
73289bc588SBarry Smith {
7444a69424SLois Curfman McInnes   Mat_Dense    *mat = (Mat_Dense *) matin->data;
756abc6512SBarry Smith   int       info;
7678b31e54SBarry Smith   if (mat->pivots) {PETSCFREE(mat->pivots); mat->pivots = 0;}
77289bc588SBarry Smith   LApotrf_("L",&mat->n,mat->v,&mat->m,&info);
7878b31e54SBarry Smith   if (info) SETERRQ(1,"Bad Cholesky factorization");
79289bc588SBarry Smith   matin->factor = FACTOR_CHOLESKY;
80289bc588SBarry Smith   return 0;
81289bc588SBarry Smith }
82289bc588SBarry Smith 
8344a69424SLois Curfman McInnes static int MatSolve_Dense(Mat matin,Vec xx,Vec yy)
84289bc588SBarry Smith {
8544a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
866abc6512SBarry Smith   int    one = 1, info;
876abc6512SBarry Smith   Scalar *x, *y;
88289bc588SBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
8978b31e54SBarry Smith   PETSCMEMCPY(y,x,mat->m*sizeof(Scalar));
909e25ed09SBarry Smith   if (matin->factor == FACTOR_LU) {
91289bc588SBarry Smith     LAgetrs_( "N", &mat->m, &one, mat->v, &mat->m, mat->pivots,
92289bc588SBarry Smith               y, &mat->m, &info );
93289bc588SBarry Smith   }
949e25ed09SBarry Smith   else if (matin->factor == FACTOR_CHOLESKY){
95289bc588SBarry Smith     LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
96289bc588SBarry Smith               y, &mat->m, &info );
97289bc588SBarry Smith   }
9878b31e54SBarry Smith   else SETERRQ(1,"Matrix must be factored to solve");
9978b31e54SBarry Smith   if (info) SETERRQ(1,"Bad solve");
100289bc588SBarry Smith   return 0;
101289bc588SBarry Smith }
10244a69424SLois Curfman McInnes static int MatSolveTrans_Dense(Mat matin,Vec xx,Vec yy)
103da3a660dSBarry Smith {
10444a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
1056abc6512SBarry Smith   int    one = 1, info;
1066abc6512SBarry Smith   Scalar *x, *y;
107da3a660dSBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
10878b31e54SBarry Smith   PETSCMEMCPY(y,x,mat->m*sizeof(Scalar));
109da3a660dSBarry Smith   /* assume if pivots exist then LU else Cholesky */
110da3a660dSBarry Smith   if (mat->pivots) {
111da3a660dSBarry Smith     LAgetrs_( "T", &mat->m, &one, mat->v, &mat->m, mat->pivots,
112da3a660dSBarry Smith               y, &mat->m, &info );
113da3a660dSBarry Smith   }
114da3a660dSBarry Smith   else {
115da3a660dSBarry Smith     LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
116da3a660dSBarry Smith               y, &mat->m, &info );
117da3a660dSBarry Smith   }
11878b31e54SBarry Smith   if (info) SETERRQ(1,"Bad solve");
119da3a660dSBarry Smith   return 0;
120da3a660dSBarry Smith }
12144a69424SLois Curfman McInnes static int MatSolveAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
122da3a660dSBarry Smith {
12344a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
1246abc6512SBarry Smith   int    one = 1, info,ierr;
1256abc6512SBarry Smith   Scalar *x, *y, sone = 1.0;
126da3a660dSBarry Smith   Vec    tmp = 0;
127da3a660dSBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
128da3a660dSBarry Smith   if (yy == zz) {
12978b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp); CHKERRQ(ierr);
13078b31e54SBarry Smith     ierr = VecCopy(yy,tmp); CHKERRQ(ierr);
131da3a660dSBarry Smith   }
13278b31e54SBarry Smith   PETSCMEMCPY(y,x,mat->m*sizeof(Scalar));
133da3a660dSBarry Smith   /* assume if pivots exist then LU else Cholesky */
134da3a660dSBarry Smith   if (mat->pivots) {
135da3a660dSBarry Smith     LAgetrs_( "N", &mat->m, &one, mat->v, &mat->m, mat->pivots,
136da3a660dSBarry Smith               y, &mat->m, &info );
137da3a660dSBarry Smith   }
138da3a660dSBarry Smith   else {
139da3a660dSBarry Smith     LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
140da3a660dSBarry Smith               y, &mat->m, &info );
141da3a660dSBarry Smith   }
14278b31e54SBarry Smith   if (info) SETERRQ(1,"Bad solve");
143da3a660dSBarry Smith   if (tmp) {VecAXPY(&sone,tmp,yy); VecDestroy(tmp);}
144da3a660dSBarry Smith   else VecAXPY(&sone,zz,yy);
145da3a660dSBarry Smith   return 0;
146da3a660dSBarry Smith }
14744a69424SLois Curfman McInnes static int MatSolveTransAdd_Dense(Mat matin,Vec xx,Vec zz, Vec yy)
148da3a660dSBarry Smith {
14944a69424SLois Curfman McInnes   Mat_Dense  *mat = (Mat_Dense *) matin->data;
1506abc6512SBarry Smith   int     one = 1, info,ierr;
1516abc6512SBarry Smith   Scalar  *x, *y, sone = 1.0;
152da3a660dSBarry Smith   Vec     tmp;
153da3a660dSBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
154da3a660dSBarry Smith   if (yy == zz) {
15578b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp); CHKERRQ(ierr);
15678b31e54SBarry Smith     ierr = VecCopy(yy,tmp); CHKERRQ(ierr);
157da3a660dSBarry Smith   }
15878b31e54SBarry Smith   PETSCMEMCPY(y,x,mat->m*sizeof(Scalar));
159da3a660dSBarry Smith   /* assume if pivots exist then LU else Cholesky */
160da3a660dSBarry Smith   if (mat->pivots) {
161da3a660dSBarry Smith     LAgetrs_( "T", &mat->m, &one, mat->v, &mat->m, mat->pivots,
162da3a660dSBarry Smith               y, &mat->m, &info );
163da3a660dSBarry Smith   }
164da3a660dSBarry Smith   else {
165da3a660dSBarry Smith     LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
166da3a660dSBarry Smith               y, &mat->m, &info );
167da3a660dSBarry Smith   }
16878b31e54SBarry Smith   if (info) SETERRQ(1,"Bad solve");
169da3a660dSBarry Smith   if (tmp) {VecAXPY(&sone,tmp,yy); VecDestroy(tmp);}
170da3a660dSBarry Smith   else VecAXPY(&sone,zz,yy);
171da3a660dSBarry Smith   return 0;
172da3a660dSBarry Smith }
173289bc588SBarry Smith /* ------------------------------------------------------------------*/
17420e1a0d4SLois Curfman McInnes static int MatRelax_Dense(Mat matin,Vec bb,double omega,MatSORType flag,
17520e1a0d4SLois Curfman McInnes                           double shift,int its,Vec xx)
176289bc588SBarry Smith {
17744a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
178289bc588SBarry Smith   Scalar *x, *b, *v = mat->v, zero = 0.0, xt;
1796abc6512SBarry Smith   int    o = 1,ierr, m = mat->m, i;
180289bc588SBarry Smith 
181289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
182289bc588SBarry Smith     /* this is a hack fix, should have another version without
183289bc588SBarry Smith        the second BLdot */
18478b31e54SBarry Smith     if ((ierr = VecSet(&zero,xx))) SETERRQ(ierr,0);
185289bc588SBarry Smith   }
186289bc588SBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b);
187289bc588SBarry Smith   while (its--) {
188289bc588SBarry Smith     if (flag & SOR_FORWARD_SWEEP){
189289bc588SBarry Smith       for ( i=0; i<m; i++ ) {
190289bc588SBarry Smith         xt = b[i]-BLdot_(&m,v+i,&m,x,&o);
191d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt/(v[i + i*m]+shift) + x[i]);
192289bc588SBarry Smith       }
193289bc588SBarry Smith     }
194289bc588SBarry Smith     if (flag & SOR_BACKWARD_SWEEP) {
195289bc588SBarry Smith       for ( i=m-1; i>=0; i-- ) {
196289bc588SBarry Smith         xt = b[i]-BLdot_(&m,v+i,&m,x,&o);
197d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt/(v[i + i*m]+shift) + x[i]);
198289bc588SBarry Smith       }
199289bc588SBarry Smith     }
200289bc588SBarry Smith   }
201289bc588SBarry Smith   return 0;
202289bc588SBarry Smith }
203289bc588SBarry Smith 
204289bc588SBarry Smith /* -----------------------------------------------------------------*/
20544a69424SLois Curfman McInnes static int MatMultTrans_Dense(Mat matin,Vec xx,Vec yy)
206289bc588SBarry Smith {
20744a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
208289bc588SBarry Smith   Scalar *v = mat->v, *x, *y;
209289bc588SBarry Smith   int _One=1;Scalar _DOne=1.0, _DZero=0.0;
210289bc588SBarry Smith   VecGetArray(xx,&x), VecGetArray(yy,&y);
211289bc588SBarry Smith   LAgemv_( "T", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
212289bc588SBarry Smith          x, &_One, &_DZero, y, &_One );
213289bc588SBarry Smith   return 0;
214289bc588SBarry Smith }
21544a69424SLois Curfman McInnes static int MatMult_Dense(Mat matin,Vec xx,Vec yy)
216289bc588SBarry Smith {
21744a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
218289bc588SBarry Smith   Scalar *v = mat->v, *x, *y;
219289bc588SBarry Smith   int _One=1;Scalar _DOne=1.0, _DZero=0.0;
220289bc588SBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
221289bc588SBarry Smith   LAgemv_( "N", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
222289bc588SBarry Smith          x, &_One, &_DZero, y, &_One );
223289bc588SBarry Smith   return 0;
224289bc588SBarry Smith }
22544a69424SLois Curfman McInnes static int MatMultAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
226289bc588SBarry Smith {
22744a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
228289bc588SBarry Smith   Scalar *v = mat->v, *x, *y, *z;
2296abc6512SBarry Smith   int    _One=1; Scalar _DOne=1.0;
230289bc588SBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y); VecGetArray(zz,&z);
23178b31e54SBarry Smith   if (zz != yy) PETSCMEMCPY(y,z,mat->m*sizeof(Scalar));
232289bc588SBarry Smith   LAgemv_( "N", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
233289bc588SBarry Smith          x, &_One, &_DOne, y, &_One );
234289bc588SBarry Smith   return 0;
235289bc588SBarry Smith }
23644a69424SLois Curfman McInnes static int MatMultTransAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
237289bc588SBarry Smith {
23844a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
239289bc588SBarry Smith   Scalar *v = mat->v, *x, *y, *z;
240289bc588SBarry Smith   int    _One=1;
2416abc6512SBarry Smith   Scalar _DOne=1.0;
242289bc588SBarry Smith   VecGetArray(xx,&x); VecGetArray(yy,&y);
243289bc588SBarry Smith   VecGetArray(zz,&z);
24478b31e54SBarry Smith   if (zz != yy) PETSCMEMCPY(y,z,mat->m*sizeof(Scalar));
245289bc588SBarry Smith   LAgemv_( "T", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
246289bc588SBarry Smith          x, &_One, &_DOne, y, &_One );
247289bc588SBarry Smith   return 0;
248289bc588SBarry Smith }
249289bc588SBarry Smith 
250289bc588SBarry Smith /* -----------------------------------------------------------------*/
25144a69424SLois Curfman McInnes static int MatGetRow_Dense(Mat matin,int row,int *ncols,int **cols,
252289bc588SBarry Smith                         Scalar **vals)
253289bc588SBarry Smith {
25444a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
255289bc588SBarry Smith   Scalar *v;
256289bc588SBarry Smith   int    i;
257289bc588SBarry Smith   *ncols = mat->n;
258289bc588SBarry Smith   if (cols) {
25978b31e54SBarry Smith     *cols = (int *) PETSCMALLOC(mat->n*sizeof(int)); CHKPTRQ(*cols);
260289bc588SBarry Smith     for ( i=0; i<mat->n; i++ ) *cols[i] = i;
261289bc588SBarry Smith   }
262289bc588SBarry Smith   if (vals) {
26378b31e54SBarry Smith     *vals = (Scalar *) PETSCMALLOC(mat->n*sizeof(Scalar)); CHKPTRQ(*vals);
264289bc588SBarry Smith     v = mat->v + row;
265289bc588SBarry Smith     for ( i=0; i<mat->n; i++ ) {*vals[i] = *v; v += mat->m;}
266289bc588SBarry Smith   }
267289bc588SBarry Smith   return 0;
268289bc588SBarry Smith }
26944a69424SLois Curfman McInnes static int MatRestoreRow_Dense(Mat matin,int row,int *ncols,int **cols,
270289bc588SBarry Smith                             Scalar **vals)
271289bc588SBarry Smith {
27278b31e54SBarry Smith   if (cols) { PETSCFREE(*cols); }
27378b31e54SBarry Smith   if (vals) { PETSCFREE(*vals); }
274289bc588SBarry Smith   return 0;
275289bc588SBarry Smith }
276289bc588SBarry Smith /* ----------------------------------------------------------------*/
27744a69424SLois Curfman McInnes static int MatInsert_Dense(Mat matin,int m,int *indexm,int n,
278e8d4e0b9SBarry Smith                         int *indexn,Scalar *v,InsertMode addv)
279289bc588SBarry Smith {
28044a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
281289bc588SBarry Smith   int    i,j;
282d6dfbf8fSBarry Smith 
283289bc588SBarry Smith   if (!mat->roworiented) {
284edae2e7dSBarry Smith     if (addv == INSERTVALUES) {
285289bc588SBarry Smith       for ( j=0; j<n; j++ ) {
286289bc588SBarry Smith         for ( i=0; i<m; i++ ) {
287289bc588SBarry Smith           mat->v[indexn[j]*mat->m + indexm[i]] = *v++;
288289bc588SBarry Smith         }
289289bc588SBarry Smith       }
290289bc588SBarry Smith     }
291289bc588SBarry Smith     else {
292289bc588SBarry Smith       for ( j=0; j<n; j++ ) {
293289bc588SBarry Smith         for ( i=0; i<m; i++ ) {
294289bc588SBarry Smith           mat->v[indexn[j]*mat->m + indexm[i]] += *v++;
295289bc588SBarry Smith         }
296289bc588SBarry Smith       }
297289bc588SBarry Smith     }
298e8d4e0b9SBarry Smith   }
299e8d4e0b9SBarry Smith   else {
300edae2e7dSBarry Smith     if (addv == INSERTVALUES) {
301e8d4e0b9SBarry Smith       for ( i=0; i<m; i++ ) {
302e8d4e0b9SBarry Smith         for ( j=0; j<n; j++ ) {
303e8d4e0b9SBarry Smith           mat->v[indexn[j]*mat->m + indexm[i]] = *v++;
304e8d4e0b9SBarry Smith         }
305e8d4e0b9SBarry Smith       }
306e8d4e0b9SBarry Smith     }
307289bc588SBarry Smith     else {
308289bc588SBarry Smith       for ( i=0; i<m; i++ ) {
309289bc588SBarry Smith         for ( j=0; j<n; j++ ) {
310289bc588SBarry Smith           mat->v[indexn[j]*mat->m + indexm[i]] += *v++;
311289bc588SBarry Smith         }
312289bc588SBarry Smith       }
313289bc588SBarry Smith     }
314e8d4e0b9SBarry Smith   }
315289bc588SBarry Smith   return 0;
316289bc588SBarry Smith }
317e8d4e0b9SBarry Smith 
318289bc588SBarry Smith /* -----------------------------------------------------------------*/
319ff7509f2SBarry Smith static int MatCopyPrivate_Dense(Mat matin,Mat *newmat)
320289bc588SBarry Smith {
32144a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
322289bc588SBarry Smith   int ierr;
323289bc588SBarry Smith   Mat newi;
32444a69424SLois Curfman McInnes   Mat_Dense *l;
3256b5873e3SBarry Smith   if ((ierr = MatCreateSequentialDense(matin->comm,mat->m,mat->n,&newi)))
32678b31e54SBarry Smith                                                           SETERRQ(ierr,0);
32744a69424SLois Curfman McInnes   l = (Mat_Dense *) newi->data;
32878b31e54SBarry Smith   PETSCMEMCPY(l->v,mat->v,mat->m*mat->n*sizeof(Scalar));
329289bc588SBarry Smith   *newmat = newi;
330289bc588SBarry Smith   return 0;
331289bc588SBarry Smith }
332da3a660dSBarry Smith #include "viewer.h"
333289bc588SBarry Smith 
33444a69424SLois Curfman McInnes int MatView_Dense(PetscObject obj,Viewer ptr)
335289bc588SBarry Smith {
336289bc588SBarry Smith   Mat         matin = (Mat) obj;
33744a69424SLois Curfman McInnes   Mat_Dense   *mat = (Mat_Dense *) matin->data;
338289bc588SBarry Smith   Scalar      *v;
339289bc588SBarry Smith   int         i,j;
34023242f5aSBarry Smith   PetscObject vobj = (PetscObject) ptr;
341da3a660dSBarry Smith 
34223242f5aSBarry Smith   if (ptr == 0) {
34323242f5aSBarry Smith     ptr = STDOUT_VIEWER; vobj = (PetscObject) ptr;
34423242f5aSBarry Smith   }
34523242f5aSBarry Smith   if (vobj->cookie == VIEWER_COOKIE && vobj->type == MATLAB_VIEWER) {
3466f75cfa4SBarry Smith     return ViewerMatlabPutArray_Private(ptr,mat->m,mat->n,mat->v);
347da3a660dSBarry Smith   }
348da3a660dSBarry Smith   else {
3494a0ce102SLois Curfman McInnes     FILE *fd = ViewerFileGetPointer_Private(ptr);
350289bc588SBarry Smith     for ( i=0; i<mat->m; i++ ) {
351289bc588SBarry Smith       v = mat->v + i;
352289bc588SBarry Smith       for ( j=0; j<mat->n; j++ ) {
353289bc588SBarry Smith #if defined(PETSC_COMPLEX)
3548e37dc09SBarry Smith         fprintf(fd,"%6.4e + %6.4e i ",real(*v),imag(*v)); v += mat->m;
355289bc588SBarry Smith #else
3568e37dc09SBarry Smith         fprintf(fd,"%6.4e ",*v); v += mat->m;
357289bc588SBarry Smith #endif
358289bc588SBarry Smith       }
3598e37dc09SBarry Smith       fprintf(fd,"\n");
360289bc588SBarry Smith     }
361da3a660dSBarry Smith   }
362289bc588SBarry Smith   return 0;
363289bc588SBarry Smith }
364289bc588SBarry Smith 
365289bc588SBarry Smith 
36644a69424SLois Curfman McInnes static int MatDestroy_Dense(PetscObject obj)
367289bc588SBarry Smith {
368289bc588SBarry Smith   Mat    mat = (Mat) obj;
36944a69424SLois Curfman McInnes   Mat_Dense *l = (Mat_Dense *) mat->data;
370a5a9c739SBarry Smith #if defined(PETSC_LOG)
371a5a9c739SBarry Smith   PLogObjectState(obj,"Rows %d Cols %d",l->m,l->n);
372a5a9c739SBarry Smith #endif
37378b31e54SBarry Smith   if (l->pivots) PETSCFREE(l->pivots);
37478b31e54SBarry Smith   PETSCFREE(l);
375a5a9c739SBarry Smith   PLogObjectDestroy(mat);
3769e25ed09SBarry Smith   PETSCHEADERDESTROY(mat);
377289bc588SBarry Smith   return 0;
378289bc588SBarry Smith }
379289bc588SBarry Smith 
38048b35521SBarry Smith static int MatTranspose_Dense(Mat matin,Mat *matout)
381289bc588SBarry Smith {
38244a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
383289bc588SBarry Smith   int    k,j;
384289bc588SBarry Smith   Scalar *v = mat->v, tmp;
38548b35521SBarry Smith 
38648b35521SBarry Smith   if (!matout) { /* in place transpose */
387289bc588SBarry Smith     if (mat->m != mat->n) {
38848b35521SBarry Smith       SETERRQ(1,"MatTranspose_Dense:Cannot transpose rectangular matrix");
389289bc588SBarry Smith     }
390289bc588SBarry Smith     for ( j=0; j<mat->m; j++ ) {
391289bc588SBarry Smith       for ( k=0; k<j; k++ ) {
392289bc588SBarry Smith         tmp = v[j + k*mat->n];
393289bc588SBarry Smith         v[j + k*mat->n] = v[k + j*mat->n];
394289bc588SBarry Smith         v[k + j*mat->n] = tmp;
395289bc588SBarry Smith       }
396289bc588SBarry Smith     }
39748b35521SBarry Smith   }
39848b35521SBarry Smith   else {
39948b35521SBarry Smith     SETERRQ(1,"MatTranspose_Dense:not out of place transpose yet");
40048b35521SBarry Smith   }
401289bc588SBarry Smith   return 0;
402289bc588SBarry Smith }
403289bc588SBarry Smith 
40444a69424SLois Curfman McInnes static int MatEqual_Dense(Mat matin1,Mat matin2)
405289bc588SBarry Smith {
40644a69424SLois Curfman McInnes   Mat_Dense *mat1 = (Mat_Dense *) matin1->data;
40744a69424SLois Curfman McInnes   Mat_Dense *mat2 = (Mat_Dense *) matin2->data;
408289bc588SBarry Smith   int    i;
409289bc588SBarry Smith   Scalar *v1 = mat1->v, *v2 = mat2->v;
410289bc588SBarry Smith   if (mat1->m != mat2->m) return 0;
411289bc588SBarry Smith   if (mat1->n != mat2->n) return 0;
412289bc588SBarry Smith   for ( i=0; i<mat1->m*mat1->n; i++ ) {
413289bc588SBarry Smith     if (*v1 != *v2) return 0;
414289bc588SBarry Smith     v1++; v2++;
415289bc588SBarry Smith   }
416289bc588SBarry Smith   return 1;
417289bc588SBarry Smith }
418289bc588SBarry Smith 
41946fc4a8fSLois Curfman McInnes static int MatGetDiagonal_Dense(Mat matin,Vec v)
420289bc588SBarry Smith {
42144a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
4226abc6512SBarry Smith   int       i, n;
4236abc6512SBarry Smith   Scalar    *x;
424289bc588SBarry Smith   VecGetArray(v,&x); VecGetSize(v,&n);
42578b31e54SBarry Smith   if (n != mat->m) SETERRQ(1,"Nonconforming matrix and vector");
426289bc588SBarry Smith   for ( i=0; i<mat->m; i++ ) {
427289bc588SBarry Smith     x[i] = mat->v[i*mat->m + i];
428289bc588SBarry Smith   }
429289bc588SBarry Smith   return 0;
430289bc588SBarry Smith }
431289bc588SBarry Smith 
43244a69424SLois Curfman McInnes static int MatScale_Dense(Mat matin,Vec ll,Vec rr)
433289bc588SBarry Smith {
43444a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
435da3a660dSBarry Smith   Scalar *l,*r,x,*v;
436da3a660dSBarry Smith   int    i,j,m = mat->m, n = mat->n;
43728988994SBarry Smith   if (ll) {
438da3a660dSBarry Smith     VecGetArray(ll,&l); VecGetSize(ll,&m);
43978b31e54SBarry Smith     if (m != mat->m) SETERRQ(1,"Left scaling vector wrong length");
440da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
441da3a660dSBarry Smith       x = l[i];
442da3a660dSBarry Smith       v = mat->v + i;
443da3a660dSBarry Smith       for ( j=0; j<n; j++ ) { (*v) *= x; v+= m;}
444da3a660dSBarry Smith     }
445da3a660dSBarry Smith   }
44628988994SBarry Smith   if (rr) {
447da3a660dSBarry Smith     VecGetArray(rr,&r); VecGetSize(rr,&n);
44878b31e54SBarry Smith     if (n != mat->n) SETERRQ(1,"Right scaling vector wrong length");
449da3a660dSBarry Smith     for ( i=0; i<n; i++ ) {
450da3a660dSBarry Smith       x = r[i];
451da3a660dSBarry Smith       v = mat->v + i*m;
452da3a660dSBarry Smith       for ( j=0; j<m; j++ ) { (*v++) *= x;}
453da3a660dSBarry Smith     }
454da3a660dSBarry Smith   }
455289bc588SBarry Smith   return 0;
456289bc588SBarry Smith }
457289bc588SBarry Smith 
458*7c17b2cfSLois Curfman McInnes static int MatNorm_Dense(Mat matin,MatNormType type,double *norm)
459289bc588SBarry Smith {
46044a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
461289bc588SBarry Smith   Scalar *v = mat->v;
462289bc588SBarry Smith   double sum = 0.0;
463289bc588SBarry Smith   int    i, j;
464289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
465289bc588SBarry Smith     for (i=0; i<mat->n*mat->m; i++ ) {
466289bc588SBarry Smith #if defined(PETSC_COMPLEX)
467289bc588SBarry Smith       sum += real(conj(*v)*(*v)); v++;
468289bc588SBarry Smith #else
469289bc588SBarry Smith       sum += (*v)*(*v); v++;
470289bc588SBarry Smith #endif
471289bc588SBarry Smith     }
472289bc588SBarry Smith     *norm = sqrt(sum);
473289bc588SBarry Smith   }
474289bc588SBarry Smith   else if (type == NORM_1) {
475289bc588SBarry Smith     *norm = 0.0;
476289bc588SBarry Smith     for ( j=0; j<mat->n; j++ ) {
477289bc588SBarry Smith       sum = 0.0;
478289bc588SBarry Smith       for ( i=0; i<mat->m; i++ ) {
479289bc588SBarry Smith #if defined(PETSC_COMPLEX)
480289bc588SBarry Smith         sum += abs(*v++);
481289bc588SBarry Smith #else
482289bc588SBarry Smith         sum += fabs(*v++);
483289bc588SBarry Smith #endif
484289bc588SBarry Smith       }
485289bc588SBarry Smith       if (sum > *norm) *norm = sum;
486289bc588SBarry Smith     }
487289bc588SBarry Smith   }
488289bc588SBarry Smith   else if (type == NORM_INFINITY) {
489289bc588SBarry Smith     *norm = 0.0;
490289bc588SBarry Smith     for ( j=0; j<mat->m; j++ ) {
491289bc588SBarry Smith       v = mat->v + j;
492289bc588SBarry Smith       sum = 0.0;
493289bc588SBarry Smith       for ( i=0; i<mat->n; i++ ) {
494289bc588SBarry Smith #if defined(PETSC_COMPLEX)
495289bc588SBarry Smith         sum += abs(*v); v += mat->m;
496289bc588SBarry Smith #else
497289bc588SBarry Smith         sum += fabs(*v); v += mat->m;
498289bc588SBarry Smith #endif
499289bc588SBarry Smith       }
500289bc588SBarry Smith       if (sum > *norm) *norm = sum;
501289bc588SBarry Smith     }
502289bc588SBarry Smith   }
503289bc588SBarry Smith   else {
50478b31e54SBarry Smith     SETERRQ(1,"No support for the two norm yet");
505289bc588SBarry Smith   }
506289bc588SBarry Smith   return 0;
507289bc588SBarry Smith }
508289bc588SBarry Smith 
50920e1a0d4SLois Curfman McInnes static int MatSetOption_Dense(Mat aijin,MatOption op)
510289bc588SBarry Smith {
51144a69424SLois Curfman McInnes   Mat_Dense *aij = (Mat_Dense *) aijin->data;
512289bc588SBarry Smith   if (op == ROW_ORIENTED)            aij->roworiented = 1;
513289bc588SBarry Smith   else if (op == COLUMN_ORIENTED)    aij->roworiented = 0;
514289bc588SBarry Smith   /* doesn't care about sorted rows or columns */
515289bc588SBarry Smith   return 0;
516289bc588SBarry Smith }
517289bc588SBarry Smith 
51844a69424SLois Curfman McInnes static int MatZero_Dense(Mat A)
5196f0a148fSBarry Smith {
52044a69424SLois Curfman McInnes   Mat_Dense *l = (Mat_Dense *) A->data;
52178b31e54SBarry Smith   PETSCMEMSET(l->v,0,l->m*l->n*sizeof(Scalar));
5226f0a148fSBarry Smith   return 0;
5236f0a148fSBarry Smith }
5246f0a148fSBarry Smith 
52544a69424SLois Curfman McInnes static int MatZeroRows_Dense(Mat A,IS is,Scalar *diag)
5266f0a148fSBarry Smith {
52744a69424SLois Curfman McInnes   Mat_Dense *l = (Mat_Dense *) A->data;
5286abc6512SBarry Smith   int    n = l->n, i, j,ierr,N, *rows;
5296f0a148fSBarry Smith   Scalar *slot;
53078b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
53178b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
5326f0a148fSBarry Smith   for ( i=0; i<N; i++ ) {
5336f0a148fSBarry Smith     slot = l->v + rows[i];
5346f0a148fSBarry Smith     for ( j=0; j<n; j++ ) { *slot = 0.0; slot += n;}
5356f0a148fSBarry Smith   }
5366f0a148fSBarry Smith   if (diag) {
5376f0a148fSBarry Smith     for ( i=0; i<N; i++ ) {
5386f0a148fSBarry Smith       slot = l->v + (n+1)*rows[i];
539260925b8SBarry Smith       *slot = *diag;
5406f0a148fSBarry Smith     }
5416f0a148fSBarry Smith   }
542260925b8SBarry Smith   ISRestoreIndices(is,&rows);
5436f0a148fSBarry Smith   return 0;
5446f0a148fSBarry Smith }
545557bce09SLois Curfman McInnes 
546fa9ec3f1SLois Curfman McInnes static int MatGetSize_Dense(Mat matin,int *m,int *n)
547557bce09SLois Curfman McInnes {
54844a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
549557bce09SLois Curfman McInnes   *m = mat->m; *n = mat->n;
550557bce09SLois Curfman McInnes   return 0;
551557bce09SLois Curfman McInnes }
552557bce09SLois Curfman McInnes 
55344a69424SLois Curfman McInnes static int MatGetArray_Dense(Mat matin,Scalar **array)
55464e87e97SBarry Smith {
55544a69424SLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
55664e87e97SBarry Smith   *array = mat->v;
55764e87e97SBarry Smith   return 0;
55864e87e97SBarry Smith }
5590754003eSLois Curfman McInnes 
5600754003eSLois Curfman McInnes 
5610754003eSLois Curfman McInnes static int MatGetSubMatrixInPlace_Dense(Mat matin,IS isrow,IS iscol)
5620754003eSLois Curfman McInnes {
56378b31e54SBarry Smith   SETERRQ(1,"MatGetSubMatrixInPlace_Dense not yet done.");
5640754003eSLois Curfman McInnes }
5650754003eSLois Curfman McInnes 
5660754003eSLois Curfman McInnes static int MatGetSubMatrix_Dense(Mat matin,IS isrow,IS iscol,Mat *submat)
5670754003eSLois Curfman McInnes {
5680754003eSLois Curfman McInnes   Mat_Dense *mat = (Mat_Dense *) matin->data;
5690754003eSLois Curfman McInnes   int     nznew, *smap, i, j, ierr, oldcols = mat->n;
570160018dcSBarry Smith   int     *irow, *icol, nrows, ncols, *cwork;
5710754003eSLois Curfman McInnes   Scalar  *vwork, *val;
5720754003eSLois Curfman McInnes   Mat     newmat;
5730754003eSLois Curfman McInnes 
57478b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow); CHKERRQ(ierr);
57578b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol); CHKERRQ(ierr);
57678b31e54SBarry Smith   ierr = ISGetSize(isrow,&nrows); CHKERRQ(ierr);
57778b31e54SBarry Smith   ierr = ISGetSize(iscol,&ncols); CHKERRQ(ierr);
5780754003eSLois Curfman McInnes 
57978b31e54SBarry Smith   smap = (int *) PETSCMALLOC(oldcols*sizeof(int)); CHKPTRQ(smap);
58078b31e54SBarry Smith   cwork = (int *) PETSCMALLOC(ncols*sizeof(int)); CHKPTRQ(cwork);
58178b31e54SBarry Smith   vwork = (Scalar *) PETSCMALLOC(ncols*sizeof(Scalar)); CHKPTRQ(vwork);
58278b31e54SBarry Smith   PETSCMEMSET((char*)smap,0,oldcols*sizeof(int));
5830754003eSLois Curfman McInnes   for ( i=0; i<ncols; i++ ) smap[icol[i]] = i+1;
5840754003eSLois Curfman McInnes 
5850754003eSLois Curfman McInnes   /* Create and fill new matrix */
5860754003eSLois Curfman McInnes   ierr = MatCreateSequentialDense(matin->comm,nrows,ncols,&newmat);
58778b31e54SBarry Smith          CHKERRQ(ierr);
5880754003eSLois Curfman McInnes   for (i=0; i<nrows; i++) {
5890754003eSLois Curfman McInnes     nznew = 0;
5900754003eSLois Curfman McInnes     val   = mat->v + irow[i];
5910754003eSLois Curfman McInnes     for (j=0; j<oldcols; j++) {
5920754003eSLois Curfman McInnes       if (smap[j]) {
5930754003eSLois Curfman McInnes         cwork[nznew]   = smap[j] - 1;
5940754003eSLois Curfman McInnes         vwork[nznew++] = val[j * mat->m];
5950754003eSLois Curfman McInnes       }
5960754003eSLois Curfman McInnes     }
597edae2e7dSBarry Smith     ierr = MatSetValues(newmat,1,&i,nznew,cwork,vwork,INSERTVALUES);
59878b31e54SBarry Smith            CHKERRQ(ierr);
5990754003eSLois Curfman McInnes   }
60078b31e54SBarry Smith   ierr = MatAssemblyBegin(newmat,FINAL_ASSEMBLY); CHKERRQ(ierr);
60178b31e54SBarry Smith   ierr = MatAssemblyEnd(newmat,FINAL_ASSEMBLY); CHKERRQ(ierr);
6020754003eSLois Curfman McInnes 
6030754003eSLois Curfman McInnes   /* Free work space */
60478b31e54SBarry Smith   PETSCFREE(smap); PETSCFREE(cwork); PETSCFREE(vwork);
60578b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow); CHKERRQ(ierr);
60678b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol); CHKERRQ(ierr);
6070754003eSLois Curfman McInnes   *submat = newmat;
6080754003eSLois Curfman McInnes   return 0;
6090754003eSLois Curfman McInnes }
6100754003eSLois Curfman McInnes 
611289bc588SBarry Smith /* -------------------------------------------------------------------*/
61244a69424SLois Curfman McInnes static struct _MatOps MatOps = {MatInsert_Dense,
61344a69424SLois Curfman McInnes        MatGetRow_Dense, MatRestoreRow_Dense,
61444a69424SLois Curfman McInnes        MatMult_Dense, MatMultAdd_Dense,
61544a69424SLois Curfman McInnes        MatMultTrans_Dense, MatMultTransAdd_Dense,
61644a69424SLois Curfman McInnes        MatSolve_Dense,MatSolveAdd_Dense,
61744a69424SLois Curfman McInnes        MatSolveTrans_Dense,MatSolveTransAdd_Dense,
61846fc4a8fSLois Curfman McInnes        MatLUFactor_Dense,MatCholeskyFactor_Dense,
61944a69424SLois Curfman McInnes        MatRelax_Dense,
62048b35521SBarry Smith        MatTranspose_Dense,
621fa9ec3f1SLois Curfman McInnes        MatGetInfo_Dense,MatEqual_Dense,
62246fc4a8fSLois Curfman McInnes        MatGetDiagonal_Dense,MatScale_Dense,MatNorm_Dense,
623289bc588SBarry Smith        0,0,
624681d1451SLois Curfman McInnes        0, MatSetOption_Dense,MatZero_Dense,MatZeroRows_Dense,0,
62544a69424SLois Curfman McInnes        MatLUFactorSymbolic_Dense,MatLUFactorNumeric_Dense,
62646fc4a8fSLois Curfman McInnes        MatCholeskyFactorSymbolic_Dense,MatCholeskyFactorNumeric_Dense,
627fa9ec3f1SLois Curfman McInnes        MatGetSize_Dense,MatGetSize_Dense,0,
62807a0e7adSLois Curfman McInnes        0,0,MatGetArray_Dense,0,0,
62907a0e7adSLois Curfman McInnes        MatGetSubMatrix_Dense,MatGetSubMatrixInPlace_Dense,
630ff7509f2SBarry Smith        MatCopyPrivate_Dense};
6310754003eSLois Curfman McInnes 
63220563c6bSBarry Smith /*@
63320563c6bSBarry Smith    MatCreateSequentialDense - Creates a sequential dense matrix that
634d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
635d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
636289bc588SBarry Smith 
63720563c6bSBarry Smith    Input Parameters:
6380c775827SLois Curfman McInnes .  comm - MPI communicator, set to MPI_COMM_SELF
6390c775827SLois Curfman McInnes .  m - number of rows
6400c775827SLois Curfman McInnes .  n - number of column
64120563c6bSBarry Smith 
64220563c6bSBarry Smith    Output Parameter:
6430c775827SLois Curfman McInnes .  newmat - the matrix
64420563c6bSBarry Smith 
645dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS
646d65003e9SLois Curfman McInnes 
647dbd7a890SLois Curfman McInnes .seealso: MatCreate(), MatSetValues()
64820563c6bSBarry Smith @*/
6496b5873e3SBarry Smith int MatCreateSequentialDense(MPI_Comm comm,int m,int n,Mat *newmat)
650289bc588SBarry Smith {
65144a69424SLois Curfman McInnes   int       size = sizeof(Mat_Dense) + m*n*sizeof(Scalar);
652289bc588SBarry Smith   Mat mat;
65344a69424SLois Curfman McInnes   Mat_Dense    *l;
654289bc588SBarry Smith   *newmat        = 0;
6556b5873e3SBarry Smith   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATDENSE,comm);
656a5a9c739SBarry Smith   PLogObjectCreate(mat);
65778b31e54SBarry Smith   l              = (Mat_Dense *) PETSCMALLOC(size); CHKPTRQ(l);
658289bc588SBarry Smith   mat->ops       = &MatOps;
65944a69424SLois Curfman McInnes   mat->destroy   = MatDestroy_Dense;
66044a69424SLois Curfman McInnes   mat->view      = MatView_Dense;
661289bc588SBarry Smith   mat->data      = (void *) l;
662289bc588SBarry Smith   mat->factor    = 0;
663d6dfbf8fSBarry Smith 
664289bc588SBarry Smith   l->m           = m;
665289bc588SBarry Smith   l->n           = n;
666289bc588SBarry Smith   l->v           = (Scalar *) (l + 1);
667289bc588SBarry Smith   l->pivots      = 0;
668289bc588SBarry Smith   l->roworiented = 1;
669d6dfbf8fSBarry Smith 
67078b31e54SBarry Smith   PETSCMEMSET(l->v,0,m*n*sizeof(Scalar));
671289bc588SBarry Smith   *newmat = mat;
672289bc588SBarry Smith   return 0;
673289bc588SBarry Smith }
674289bc588SBarry Smith 
67544a69424SLois Curfman McInnes int MatCreate_Dense(Mat matin,Mat *newmat)
676289bc588SBarry Smith {
67744a69424SLois Curfman McInnes   Mat_Dense *m = (Mat_Dense *) matin->data;
6786b5873e3SBarry Smith   return MatCreateSequentialDense(matin->comm,m->m,m->n,newmat);
679289bc588SBarry Smith }
680