xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 888c827cec923cebb7f4d355e4d985c1818c0baa)
167e560aaSBarry Smith /*
267e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
347d993e7Ssuyashtn      Portions of this code are under:
447d993e7Ssuyashtn      Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
567e560aaSBarry Smith */
6289bc588SBarry Smith 
7dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
8cd3f9d89SJunchao Zhang #include <../src/mat/impls/dense/mpi/mpidense.h>
9c6db04a5SJed Brown #include <petscblaslapack.h>
106a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
114186a4bbSPierre Jolivet #include <petsc/private/vecimpl.h>
12b2573a8aSBarry Smith 
13d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
14d71ae5a4SJacob Faibussowitsch {
158c178816SStefano Zampini   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
168c178816SStefano Zampini   PetscInt      j, k, n = A->rmap->n;
17ca15aa20SStefano Zampini   PetscScalar  *v;
188c178816SStefano Zampini 
198c178816SStefano Zampini   PetscFunctionBegin;
2008401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot symmetrize a rectangular matrix");
219566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &v));
228c178816SStefano Zampini   if (!hermitian) {
238c178816SStefano Zampini     for (k = 0; k < n; k++) {
24ad540459SPierre Jolivet       for (j = k; j < n; j++) v[j * mat->lda + k] = v[k * mat->lda + j];
258c178816SStefano Zampini     }
268c178816SStefano Zampini   } else {
278c178816SStefano Zampini     for (k = 0; k < n; k++) {
28ad540459SPierre Jolivet       for (j = k; j < n; j++) v[j * mat->lda + k] = PetscConj(v[k * mat->lda + j]);
298c178816SStefano Zampini     }
308c178816SStefano Zampini   }
319566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &v));
323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
338c178816SStefano Zampini }
348c178816SStefano Zampini 
35ff6a9541SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
36d71ae5a4SJacob Faibussowitsch {
378c178816SStefano Zampini   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
388c178816SStefano Zampini   PetscBLASInt  info, n;
398c178816SStefano Zampini 
408c178816SStefano Zampini   PetscFunctionBegin;
413ba16761SJacob Faibussowitsch   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
429566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &n));
438c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
4428b400f6SJacob Faibussowitsch     PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present");
458c178816SStefano Zampini     if (!mat->fwork) {
468c178816SStefano Zampini       mat->lfwork = n;
479566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
488c178816SStefano Zampini     }
499566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
50792fecdfSBarry Smith     PetscCallBLAS("LAPACKgetri", LAPACKgetri_(&n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info));
519566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
529566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0));
538c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
54b94d7dedSBarry Smith     if (A->spd == PETSC_BOOL3_TRUE) {
559566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
56792fecdfSBarry Smith       PetscCallBLAS("LAPACKpotri", LAPACKpotri_("L", &n, mat->v, &mat->lda, &info));
579566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
589566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE));
598c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
60b94d7dedSBarry Smith     } else if (A->hermitian == PETSC_BOOL3_TRUE) {
6128b400f6SJacob Faibussowitsch       PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present");
6228b400f6SJacob Faibussowitsch       PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present");
639566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
64792fecdfSBarry Smith       PetscCallBLAS("LAPACKhetri", LAPACKhetri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info));
659566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
669566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE));
678c178816SStefano Zampini #endif
688c178816SStefano Zampini     } else { /* symmetric case */
6928b400f6SJacob Faibussowitsch       PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present");
7028b400f6SJacob Faibussowitsch       PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present");
719566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
72792fecdfSBarry Smith       PetscCallBLAS("LAPACKsytri", LAPACKsytri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info));
739566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
749566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_FALSE));
758c178816SStefano Zampini     }
76835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad Inversion: zero pivot in row %" PetscBLASInt_FMT, info - 1);
779566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0));
788c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix must be factored to solve");
798c178816SStefano Zampini 
808c178816SStefano Zampini   A->ops->solve             = NULL;
818c178816SStefano Zampini   A->ops->matsolve          = NULL;
828c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
838c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
848c178816SStefano Zampini   A->ops->solveadd          = NULL;
858c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
868c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
898c178816SStefano Zampini }
908c178816SStefano Zampini 
9166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
92d71ae5a4SJacob Faibussowitsch {
933f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense *)A->data;
943f49a652SStefano Zampini   PetscInt           m = l->lda, n = A->cmap->n, r = A->rmap->n, i, j;
95ca15aa20SStefano Zampini   PetscScalar       *slot, *bb, *v;
963f49a652SStefano Zampini   const PetscScalar *xx;
973f49a652SStefano Zampini 
983f49a652SStefano Zampini   PetscFunctionBegin;
9976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1003f49a652SStefano Zampini     for (i = 0; i < N; i++) {
10108401ef6SPierre Jolivet       PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed");
10208401ef6SPierre Jolivet       PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n);
10308401ef6SPierre Jolivet       PetscCheck(rows[i] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col %" PetscInt_FMT " requested to be zeroed greater than or equal number of cols %" PetscInt_FMT, rows[i], A->cmap->n);
1043f49a652SStefano Zampini     }
10576bd3646SJed Brown   }
1063ba16761SJacob Faibussowitsch   if (!N) PetscFunctionReturn(PETSC_SUCCESS);
1073f49a652SStefano Zampini 
108dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
1093f49a652SStefano Zampini   if (x && b) {
1106c4d906cSStefano Zampini     Vec xt;
1116c4d906cSStefano Zampini 
11208401ef6SPierre Jolivet     PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices");
1139566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(x, &xt));
1149566063dSJacob Faibussowitsch     PetscCall(VecCopy(x, xt));
1159566063dSJacob Faibussowitsch     PetscCall(VecScale(xt, -1.0));
1169566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(A, xt, b, b));
1179566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xt));
1189566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
1199566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
1203f49a652SStefano Zampini     for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]];
1219566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
1229566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
1233f49a652SStefano Zampini   }
1243f49a652SStefano Zampini 
1259566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &v));
1263f49a652SStefano Zampini   for (i = 0; i < N; i++) {
127ca15aa20SStefano Zampini     slot = v + rows[i] * m;
1289566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(slot, r));
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini   for (i = 0; i < N; i++) {
131ca15aa20SStefano Zampini     slot = v + rows[i];
1329371c9d4SSatish Balay     for (j = 0; j < n; j++) {
1339371c9d4SSatish Balay       *slot = 0.0;
1349371c9d4SSatish Balay       slot += m;
1359371c9d4SSatish Balay     }
1363f49a652SStefano Zampini   }
1373f49a652SStefano Zampini   if (diag != 0.0) {
13808401ef6SPierre Jolivet     PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices");
1393f49a652SStefano Zampini     for (i = 0; i < N; i++) {
140ca15aa20SStefano Zampini       slot  = v + (m + 1) * rows[i];
1413f49a652SStefano Zampini       *slot = diag;
1423f49a652SStefano Zampini     }
1433f49a652SStefano Zampini   }
1449566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &v));
1453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1463f49a652SStefano Zampini }
1473f49a652SStefano Zampini 
148d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
149d71ae5a4SJacob Faibussowitsch {
150a13144ffSStefano Zampini   Mat              B = NULL;
151b49cda9fSStefano Zampini   Mat_SeqAIJ      *a = (Mat_SeqAIJ *)A->data;
152b49cda9fSStefano Zampini   Mat_SeqDense    *b;
153b49cda9fSStefano Zampini   PetscInt        *ai = a->i, *aj = a->j, m = A->rmap->N, n = A->cmap->N, i;
1542e5835c6SStefano Zampini   const MatScalar *av;
155a13144ffSStefano Zampini   PetscBool        isseqdense;
156b49cda9fSStefano Zampini 
157b49cda9fSStefano Zampini   PetscFunctionBegin;
158a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
1599566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)*newmat, MATSEQDENSE, &isseqdense));
160f4f49eeaSPierre Jolivet     PetscCheck(isseqdense, PetscObjectComm((PetscObject)*newmat), PETSC_ERR_USER, "Cannot reuse matrix of type %s", ((PetscObject)*newmat)->type_name);
161a13144ffSStefano Zampini   }
162a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
1639566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1649566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, m, n, m, n));
1659566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQDENSE));
1669566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(B, NULL));
167f4f49eeaSPierre Jolivet     b = (Mat_SeqDense *)B->data;
168a13144ffSStefano Zampini   } else {
169a13144ffSStefano Zampini     b = (Mat_SeqDense *)((*newmat)->data);
170e1ea5af7SJose E. Roman     for (i = 0; i < n; i++) PetscCall(PetscArrayzero(b->v + i * b->lda, m));
171a13144ffSStefano Zampini   }
1729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A, &av));
173b49cda9fSStefano Zampini   for (i = 0; i < m; i++) {
174b49cda9fSStefano Zampini     PetscInt j;
175b49cda9fSStefano Zampini     for (j = 0; j < ai[1] - ai[0]; j++) {
176e1ea5af7SJose E. Roman       b->v[*aj * b->lda + i] = *av;
177b49cda9fSStefano Zampini       aj++;
178b49cda9fSStefano Zampini       av++;
179b49cda9fSStefano Zampini     }
180b49cda9fSStefano Zampini     ai++;
181b49cda9fSStefano Zampini   }
1829566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A, &av));
183b49cda9fSStefano Zampini 
184511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
1859566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1869566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1879566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
188b49cda9fSStefano Zampini   } else {
189a13144ffSStefano Zampini     if (B) *newmat = B;
1909566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*newmat, MAT_FINAL_ASSEMBLY));
1919566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*newmat, MAT_FINAL_ASSEMBLY));
192b49cda9fSStefano Zampini   }
1933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
194b49cda9fSStefano Zampini }
195b49cda9fSStefano Zampini 
196d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
197d71ae5a4SJacob Faibussowitsch {
1986d4ec7b0SPierre Jolivet   Mat           B = NULL;
1996a63e612SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
2009399e1b8SMatthew G. Knepley   PetscInt      i, j;
2019399e1b8SMatthew G. Knepley   PetscInt     *rows, *nnz;
2029399e1b8SMatthew G. Knepley   MatScalar    *aa = a->v, *vals;
2036a63e612SBarry Smith 
2046a63e612SBarry Smith   PetscFunctionBegin;
2059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(A->rmap->n, &rows, A->rmap->n, &nnz, A->rmap->n, &vals));
2066d4ec7b0SPierre Jolivet   if (reuse != MAT_REUSE_MATRIX) {
2079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2089566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2099566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQAIJ));
2109399e1b8SMatthew G. Knepley     for (j = 0; j < A->cmap->n; j++) {
2119371c9d4SSatish Balay       for (i = 0; i < A->rmap->n; i++)
2129371c9d4SSatish Balay         if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i];
2136a63e612SBarry Smith       aa += a->lda;
2146a63e612SBarry Smith     }
2159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, PETSC_DETERMINE, nnz));
2166d4ec7b0SPierre Jolivet   } else B = *newmat;
2179399e1b8SMatthew G. Knepley   aa = a->v;
2189399e1b8SMatthew G. Knepley   for (j = 0; j < A->cmap->n; j++) {
2199399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2209371c9d4SSatish Balay     for (i = 0; i < A->rmap->n; i++)
2219371c9d4SSatish Balay       if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {
2229371c9d4SSatish Balay         rows[numRows]   = i;
2239371c9d4SSatish Balay         vals[numRows++] = aa[i];
2249371c9d4SSatish Balay       }
2259566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, numRows, rows, 1, &j, vals, INSERT_VALUES));
2269399e1b8SMatthew G. Knepley     aa += a->lda;
2279399e1b8SMatthew G. Knepley   }
2289566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rows, nnz, vals));
2299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
2316a63e612SBarry Smith 
232511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2339566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
2346d4ec7b0SPierre Jolivet   } else if (reuse != MAT_REUSE_MATRIX) *newmat = B;
2353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2366a63e612SBarry Smith }
2376a63e612SBarry Smith 
238d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_SeqDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str)
239d71ae5a4SJacob Faibussowitsch {
2401987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense *)X->data, *y = (Mat_SeqDense *)Y->data;
241ca15aa20SStefano Zampini   const PetscScalar *xv;
242ca15aa20SStefano Zampini   PetscScalar       *yv;
24323fff9afSBarry Smith   PetscBLASInt       N, m, ldax = 0, lday = 0, one = 1;
2443a40ed3dSBarry Smith 
2453a40ed3dSBarry Smith   PetscFunctionBegin;
2469566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(X, &xv));
2479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(Y, &yv));
2489566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(X->rmap->n * X->cmap->n, &N));
2499566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(X->rmap->n, &m));
2509566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(x->lda, &ldax));
2519566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(y->lda, &lday));
252a5ce6ee0Svictorle   if (ldax > m || lday > m) {
2538e3a54c0SPierre Jolivet     for (PetscInt j = 0; j < X->cmap->n; j++) PetscCallBLAS("BLASaxpy", BLASaxpy_(&m, &alpha, PetscSafePointerPlusOffset(xv, j * ldax), &one, PetscSafePointerPlusOffset(yv, j * lday), &one));
254a5ce6ee0Svictorle   } else {
255792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&N, &alpha, xv, &one, yv, &one));
256a5ce6ee0Svictorle   }
2579566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(X, &xv));
2589566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(Y, &yv));
2599566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(PetscMax(2.0 * N - 1, 0)));
2603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2611987afe7SBarry Smith }
2621987afe7SBarry Smith 
263d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetInfo_SeqDense(Mat A, MatInfoType flag, MatInfo *info)
264d71ae5a4SJacob Faibussowitsch {
265ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n * A->cmap->n;
2663a40ed3dSBarry Smith 
2673a40ed3dSBarry Smith   PetscFunctionBegin;
2684e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
269ca15aa20SStefano Zampini   info->nz_allocated      = N;
270ca15aa20SStefano Zampini   info->nz_used           = N;
271ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
272ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
2734e220ebcSLois Curfman McInnes   info->mallocs           = 0;
2744dfa11a4SJacob Faibussowitsch   info->memory            = 0; /* REVIEW ME */
2754e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
2764e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
2774e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
2783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279289bc588SBarry Smith }
280289bc588SBarry Smith 
281d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqDense(Mat A, PetscScalar alpha)
282d71ae5a4SJacob Faibussowitsch {
283273d9f13SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
284ca15aa20SStefano Zampini   PetscScalar  *v;
28523fff9afSBarry Smith   PetscBLASInt  one = 1, j, nz, lda = 0;
28680cd9d93SLois Curfman McInnes 
2873a40ed3dSBarry Smith   PetscFunctionBegin;
2889566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &v));
2899566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->lda, &lda));
290d0f46423SBarry Smith   if (lda > A->rmap->n) {
2919566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(A->rmap->n, &nz));
29248a46eb9SPierre Jolivet     for (j = 0; j < A->cmap->n; j++) PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v + j * lda, &one));
293a5ce6ee0Svictorle   } else {
2949566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(A->rmap->n * A->cmap->n, &nz));
295792fecdfSBarry Smith     PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v, &one));
296a5ce6ee0Svictorle   }
29704cbc005SJose E. Roman   PetscCall(PetscLogFlops(A->rmap->n * A->cmap->n));
2989566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &v));
2993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30080cd9d93SLois Curfman McInnes }
30180cd9d93SLois Curfman McInnes 
302d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqDense(Mat A, PetscScalar alpha)
303d71ae5a4SJacob Faibussowitsch {
3042f605a99SJose E. Roman   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
3052f605a99SJose E. Roman   PetscScalar  *v;
3062f605a99SJose E. Roman   PetscInt      j, k;
3072f605a99SJose E. Roman 
3082f605a99SJose E. Roman   PetscFunctionBegin;
3092f605a99SJose E. Roman   PetscCall(MatDenseGetArray(A, &v));
3102f605a99SJose E. Roman   k = PetscMin(A->rmap->n, A->cmap->n);
3112f605a99SJose E. Roman   for (j = 0; j < k; j++) v[j + j * a->lda] += alpha;
3122f605a99SJose E. Roman   PetscCall(PetscLogFlops(k));
3132f605a99SJose E. Roman   PetscCall(MatDenseRestoreArray(A, &v));
3143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3152f605a99SJose E. Roman }
3162f605a99SJose E. Roman 
317d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsHermitian_SeqDense(Mat A, PetscReal rtol, PetscBool *fl)
318d71ae5a4SJacob Faibussowitsch {
3191cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
320ca15aa20SStefano Zampini   PetscInt           i, j, m = A->rmap->n, N = a->lda;
321ca15aa20SStefano Zampini   const PetscScalar *v;
3221cbb95d3SBarry Smith 
3231cbb95d3SBarry Smith   PetscFunctionBegin;
3241cbb95d3SBarry Smith   *fl = PETSC_FALSE;
3253ba16761SJacob Faibussowitsch   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
3269566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &v));
3271cbb95d3SBarry Smith   for (i = 0; i < m; i++) {
328ca15aa20SStefano Zampini     for (j = i; j < m; j++) {
329ad540459SPierre Jolivet       if (PetscAbsScalar(v[i + j * N] - PetscConj(v[j + i * N])) > rtol) goto restore;
3301cbb95d3SBarry Smith     }
331637a0070SStefano Zampini   }
3321cbb95d3SBarry Smith   *fl = PETSC_TRUE;
333637a0070SStefano Zampini restore:
3349566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &v));
3353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
336637a0070SStefano Zampini }
337637a0070SStefano Zampini 
338d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_SeqDense(Mat A, PetscReal rtol, PetscBool *fl)
339d71ae5a4SJacob Faibussowitsch {
340637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
341637a0070SStefano Zampini   PetscInt           i, j, m = A->rmap->n, N = a->lda;
342637a0070SStefano Zampini   const PetscScalar *v;
343637a0070SStefano Zampini 
344637a0070SStefano Zampini   PetscFunctionBegin;
345637a0070SStefano Zampini   *fl = PETSC_FALSE;
3463ba16761SJacob Faibussowitsch   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
3479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &v));
348637a0070SStefano Zampini   for (i = 0; i < m; i++) {
349637a0070SStefano Zampini     for (j = i; j < m; j++) {
350ad540459SPierre Jolivet       if (PetscAbsScalar(v[i + j * N] - v[j + i * N]) > rtol) goto restore;
351637a0070SStefano Zampini     }
352637a0070SStefano Zampini   }
353637a0070SStefano Zampini   *fl = PETSC_TRUE;
354637a0070SStefano Zampini restore:
3559566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &v));
3563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3571cbb95d3SBarry Smith }
3581cbb95d3SBarry Smith 
359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi, Mat A, MatDuplicateOption cpvalues)
360d71ae5a4SJacob Faibussowitsch {
361ca15aa20SStefano Zampini   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
362835f2295SStefano Zampini   PetscInt      lda = mat->lda, j, m, nlda = lda;
36375f6d85dSStefano Zampini   PetscBool     isdensecpu;
364b24902e0SBarry Smith 
365b24902e0SBarry Smith   PetscFunctionBegin;
3669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &newi->rmap));
3679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &newi->cmap));
36823fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
3699566063dSJacob Faibussowitsch     PetscCall(MatDenseSetLDA(newi, lda));
37023fc5dcaSStefano Zampini   }
3719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)newi, MATSEQDENSE, &isdensecpu));
3729566063dSJacob Faibussowitsch   if (isdensecpu) PetscCall(MatSeqDenseSetPreallocation(newi, NULL));
373b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
374ca15aa20SStefano Zampini     const PetscScalar *av;
375ca15aa20SStefano Zampini     PetscScalar       *v;
376ca15aa20SStefano Zampini 
3779566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A, &av));
3789566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayWrite(newi, &v));
3799566063dSJacob Faibussowitsch     PetscCall(MatDenseGetLDA(newi, &nlda));
380d0f46423SBarry Smith     m = A->rmap->n;
38123fc5dcaSStefano Zampini     if (lda > m || nlda > m) {
3828e3a54c0SPierre Jolivet       for (j = 0; j < A->cmap->n; j++) PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(v, j * nlda), PetscSafePointerPlusOffset(av, j * lda), m));
383b24902e0SBarry Smith     } else {
3849566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, av, A->rmap->n * A->cmap->n));
385b24902e0SBarry Smith     }
3869566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayWrite(newi, &v));
3879566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A, &av));
388c956ced0SPierre Jolivet     PetscCall(MatPropagateSymmetryOptions(A, newi));
389b24902e0SBarry Smith   }
3903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
391b24902e0SBarry Smith }
392b24902e0SBarry Smith 
393d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat)
394d71ae5a4SJacob Faibussowitsch {
3953a40ed3dSBarry Smith   PetscFunctionBegin;
3969566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), newmat));
3979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*newmat, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
3989566063dSJacob Faibussowitsch   PetscCall(MatSetType(*newmat, ((PetscObject)A)->type_name));
3999566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(*newmat, A, cpvalues));
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401b24902e0SBarry Smith }
402b24902e0SBarry Smith 
403d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
404d71ae5a4SJacob Faibussowitsch {
405c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
4064396437dSToby Isaac   PetscBLASInt  info;
40767e560aaSBarry Smith 
4083a40ed3dSBarry Smith   PetscFunctionBegin;
4099566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
410792fecdfSBarry Smith   PetscCallBLAS("LAPACKgetrs", LAPACKgetrs_(T ? "T" : "N", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info));
4119566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
412835f2295SStefano Zampini   PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "GETRS - Bad solve %" PetscBLASInt_FMT, info);
4139566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m)));
4143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4154396437dSToby Isaac }
4164396437dSToby Isaac 
4174396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat);
4184396437dSToby Isaac 
419d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
420d71ae5a4SJacob Faibussowitsch {
4214396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
4224396437dSToby Isaac   PetscBLASInt  info;
4234396437dSToby Isaac 
4244396437dSToby Isaac   PetscFunctionBegin;
425b94d7dedSBarry Smith   if (A->spd == PETSC_BOOL3_TRUE) {
4269566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A));
4279566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
428792fecdfSBarry Smith     PetscCallBLAS("LAPACKpotrs", LAPACKpotrs_("L", &m, &nrhs, mat->v, &mat->lda, x, &m, &info));
4299566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
430835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "POTRS Bad solve %" PetscBLASInt_FMT, info);
4319566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A));
432a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
433b94d7dedSBarry Smith   } else if (A->hermitian == PETSC_BOOL3_TRUE) {
4349566063dSJacob Faibussowitsch     if (T) PetscCall(MatConjugate_SeqDense(A));
4359566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
436792fecdfSBarry Smith     PetscCallBLAS("LAPACKhetrs", LAPACKhetrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info));
4379566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
438835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "HETRS Bad solve %" PetscBLASInt_FMT, info);
4399566063dSJacob Faibussowitsch     if (T) PetscCall(MatConjugate_SeqDense(A));
440a49dc2a2SStefano Zampini #endif
441a49dc2a2SStefano Zampini   } else { /* symmetric case */
4429566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
443792fecdfSBarry Smith     PetscCallBLAS("LAPACKsytrs", LAPACKsytrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info));
4449566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
445835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "SYTRS Bad solve %" PetscBLASInt_FMT, info);
446a49dc2a2SStefano Zampini   }
4479566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m)));
4483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4494396437dSToby Isaac }
45085e2c93fSHong Zhang 
451d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
452d71ae5a4SJacob Faibussowitsch {
4534396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
4544396437dSToby Isaac   PetscBLASInt  info;
4554396437dSToby Isaac   char          trans;
4564396437dSToby Isaac 
4574396437dSToby Isaac   PetscFunctionBegin;
4584905a7bcSToby Isaac   if (PetscDefined(USE_COMPLEX)) {
4594905a7bcSToby Isaac     trans = 'C';
4604905a7bcSToby Isaac   } else {
4614905a7bcSToby Isaac     trans = 'T';
4624905a7bcSToby Isaac   }
4639566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
46405fcb23eSStefano Zampini   { /* lwork depends on the number of right-hand sides */
46505fcb23eSStefano Zampini     PetscBLASInt nlfwork, lfwork = -1;
46605fcb23eSStefano Zampini     PetscScalar  fwork;
46705fcb23eSStefano Zampini 
468792fecdfSBarry Smith     PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info));
46905fcb23eSStefano Zampini     nlfwork = (PetscBLASInt)PetscRealPart(fwork);
47005fcb23eSStefano Zampini     if (nlfwork > mat->lfwork) {
47105fcb23eSStefano Zampini       mat->lfwork = nlfwork;
47205fcb23eSStefano Zampini       PetscCall(PetscFree(mat->fwork));
47305fcb23eSStefano Zampini       PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
47405fcb23eSStefano Zampini     }
47505fcb23eSStefano Zampini   }
476792fecdfSBarry Smith   PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info));
4779566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
478835f2295SStefano Zampini   PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %" PetscBLASInt_FMT, info);
4799566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
480792fecdfSBarry Smith   PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "N", "N", &mat->rank, &nrhs, mat->v, &mat->lda, x, &ldx, &info));
4819566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
482835f2295SStefano Zampini   PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %" PetscBLASInt_FMT, info);
4834905a7bcSToby Isaac   for (PetscInt j = 0; j < nrhs; j++) {
484ad540459SPierre Jolivet     for (PetscInt i = mat->rank; i < k; i++) x[j * ldx + i] = 0.;
4854905a7bcSToby Isaac   }
4869566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank))));
4873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4884905a7bcSToby Isaac }
4894905a7bcSToby Isaac 
490d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
491d71ae5a4SJacob Faibussowitsch {
4924396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
4934396437dSToby Isaac   PetscBLASInt  info;
4944396437dSToby Isaac 
4954396437dSToby Isaac   PetscFunctionBegin;
4964396437dSToby Isaac   if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) {
4979566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
498792fecdfSBarry Smith     PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "T", "N", &m, &nrhs, mat->v, &mat->lda, x, &ldx, &info));
4999566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
500835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %" PetscBLASInt_FMT, info);
5019566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A));
50205fcb23eSStefano Zampini     { /* lwork depends on the number of right-hand sides */
50305fcb23eSStefano Zampini       PetscBLASInt nlfwork, lfwork = -1;
50405fcb23eSStefano Zampini       PetscScalar  fwork;
50505fcb23eSStefano Zampini 
506792fecdfSBarry Smith       PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info));
50705fcb23eSStefano Zampini       nlfwork = (PetscBLASInt)PetscRealPart(fwork);
50805fcb23eSStefano Zampini       if (nlfwork > mat->lfwork) {
50905fcb23eSStefano Zampini         mat->lfwork = nlfwork;
51005fcb23eSStefano Zampini         PetscCall(PetscFree(mat->fwork));
51105fcb23eSStefano Zampini         PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
51205fcb23eSStefano Zampini       }
51305fcb23eSStefano Zampini     }
5149566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
515792fecdfSBarry Smith     PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info));
5169566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
517835f2295SStefano Zampini     PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %" PetscBLASInt_FMT, info);
5189566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A));
5194396437dSToby Isaac   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "QR factored matrix cannot be used for transpose solve");
5209566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank))));
5213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5224396437dSToby Isaac }
5234396437dSToby Isaac 
524d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
525d71ae5a4SJacob Faibussowitsch {
5264396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
5274905a7bcSToby Isaac   PetscScalar  *y;
5284905a7bcSToby Isaac   PetscBLASInt  m = 0, k = 0;
5294905a7bcSToby Isaac 
5304905a7bcSToby Isaac   PetscFunctionBegin;
5319566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
5329566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &k));
5334905a7bcSToby Isaac   if (k < m) {
5349566063dSJacob Faibussowitsch     PetscCall(VecCopy(xx, mat->qrrhs));
5359566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->qrrhs, &y));
5364905a7bcSToby Isaac   } else {
5379566063dSJacob Faibussowitsch     PetscCall(VecCopy(xx, yy));
5389566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &y));
5394905a7bcSToby Isaac   }
5404396437dSToby Isaac   *_y = y;
5414396437dSToby Isaac   *_k = k;
5424396437dSToby Isaac   *_m = m;
5433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5444396437dSToby Isaac }
5454396437dSToby Isaac 
546d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
547d71ae5a4SJacob Faibussowitsch {
5484396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
54942e9364cSSatish Balay   PetscScalar  *y   = NULL;
5504396437dSToby Isaac   PetscBLASInt  m, k;
5514396437dSToby Isaac 
5524396437dSToby Isaac   PetscFunctionBegin;
5534396437dSToby Isaac   y   = *_y;
5544396437dSToby Isaac   *_y = NULL;
5554396437dSToby Isaac   k   = *_k;
5564396437dSToby Isaac   m   = *_m;
5574905a7bcSToby Isaac   if (k < m) {
5584905a7bcSToby Isaac     PetscScalar *yv;
5599566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &yv));
5609566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(yv, y, k));
5619566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &yv));
5629566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->qrrhs, &y));
5634905a7bcSToby Isaac   } else {
5649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &y));
5654905a7bcSToby Isaac   }
5663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5674905a7bcSToby Isaac }
5684905a7bcSToby Isaac 
569d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy)
570d71ae5a4SJacob Faibussowitsch {
57142e9364cSSatish Balay   PetscScalar *y = NULL;
57242e9364cSSatish Balay   PetscBLASInt m = 0, k = 0;
5734396437dSToby Isaac 
5744396437dSToby Isaac   PetscFunctionBegin;
5759566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
5769566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE));
5779566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
5783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5794396437dSToby Isaac }
5804396437dSToby Isaac 
581d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy)
582d71ae5a4SJacob Faibussowitsch {
58342e9364cSSatish Balay   PetscScalar *y = NULL;
58442e9364cSSatish Balay   PetscBLASInt m = 0, k = 0;
5854396437dSToby Isaac 
5864396437dSToby Isaac   PetscFunctionBegin;
5879566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
5889566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE));
5899566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
5903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5914396437dSToby Isaac }
5924396437dSToby Isaac 
593d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
594d71ae5a4SJacob Faibussowitsch {
595e54beecaSStefano Zampini   PetscScalar *y = NULL;
596e54beecaSStefano Zampini   PetscBLASInt m = 0, k = 0;
5974396437dSToby Isaac 
5984396437dSToby Isaac   PetscFunctionBegin;
5999566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6009566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE));
6019566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6034396437dSToby Isaac }
6044396437dSToby Isaac 
605d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
606d71ae5a4SJacob Faibussowitsch {
607e54beecaSStefano Zampini   PetscScalar *y = NULL;
608e54beecaSStefano Zampini   PetscBLASInt m = 0, k = 0;
6094396437dSToby Isaac 
6104396437dSToby Isaac   PetscFunctionBegin;
6119566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6129566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE));
6139566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6154396437dSToby Isaac }
6164396437dSToby Isaac 
617d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy)
618d71ae5a4SJacob Faibussowitsch {
619e54beecaSStefano Zampini   PetscScalar *y = NULL;
620e54beecaSStefano Zampini   PetscBLASInt m = 0, k = 0;
6214396437dSToby Isaac 
6224396437dSToby Isaac   PetscFunctionBegin;
6239566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6249566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k));
6259566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6274396437dSToby Isaac }
6284396437dSToby Isaac 
629d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy)
630d71ae5a4SJacob Faibussowitsch {
63142e9364cSSatish Balay   PetscScalar *y = NULL;
63242e9364cSSatish Balay   PetscBLASInt m = 0, k = 0;
6334396437dSToby Isaac 
6344396437dSToby Isaac   PetscFunctionBegin;
6359566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6369566063dSJacob Faibussowitsch   PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k));
6379566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6394396437dSToby Isaac }
6404396437dSToby Isaac 
641d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
642d71ae5a4SJacob Faibussowitsch {
6434905a7bcSToby Isaac   const PetscScalar *b;
6444396437dSToby Isaac   PetscScalar       *y;
645bf5a80bcSToby Isaac   PetscInt           n, _ldb, _ldx;
646bf5a80bcSToby Isaac   PetscBLASInt       nrhs = 0, m = 0, k = 0, ldb = 0, ldx = 0, ldy = 0;
6474905a7bcSToby Isaac 
6484905a7bcSToby Isaac   PetscFunctionBegin;
6499371c9d4SSatish Balay   *_ldy  = 0;
6509371c9d4SSatish Balay   *_m    = 0;
6519371c9d4SSatish Balay   *_nrhs = 0;
6529371c9d4SSatish Balay   *_k    = 0;
6539371c9d4SSatish Balay   *_y    = NULL;
6549566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
6559566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &k));
6569566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, NULL, &n));
6579566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(n, &nrhs));
6589566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &_ldb));
6599566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldb, &ldb));
6609566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(X, &_ldx));
6619566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldx, &ldx));
662bf5a80bcSToby Isaac   if (ldx < m) {
6639566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(B, &b));
6649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nrhs * m, &y));
665bf5a80bcSToby Isaac     if (ldb == m) {
6669566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(y, b, ldb * nrhs));
6674905a7bcSToby Isaac     } else {
66848a46eb9SPierre Jolivet       for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * m], &b[j * ldb], m));
6694905a7bcSToby Isaac     }
670bf5a80bcSToby Isaac     ldy = m;
6719566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(B, &b));
6724905a7bcSToby Isaac   } else {
673bf5a80bcSToby Isaac     if (ldb == ldx) {
6749566063dSJacob Faibussowitsch       PetscCall(MatCopy(B, X, SAME_NONZERO_PATTERN));
6759566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(X, &y));
6764905a7bcSToby Isaac     } else {
6779566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(X, &y));
6789566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArrayRead(B, &b));
67948a46eb9SPierre Jolivet       for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * ldx], &b[j * ldb], m));
6809566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArrayRead(B, &b));
6814905a7bcSToby Isaac     }
682bf5a80bcSToby Isaac     ldy = ldx;
6834905a7bcSToby Isaac   }
6844396437dSToby Isaac   *_y    = y;
685bf5a80bcSToby Isaac   *_ldy  = ldy;
6864396437dSToby Isaac   *_k    = k;
6874396437dSToby Isaac   *_m    = m;
6884396437dSToby Isaac   *_nrhs = nrhs;
6893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6904396437dSToby Isaac }
6914396437dSToby Isaac 
692d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
693d71ae5a4SJacob Faibussowitsch {
6944396437dSToby Isaac   PetscScalar *y;
695bf5a80bcSToby Isaac   PetscInt     _ldx;
696bf5a80bcSToby Isaac   PetscBLASInt k, ldy, nrhs, ldx = 0;
6974396437dSToby Isaac 
6984396437dSToby Isaac   PetscFunctionBegin;
6994396437dSToby Isaac   y    = *_y;
7004396437dSToby Isaac   *_y  = NULL;
7014396437dSToby Isaac   k    = *_k;
702bf5a80bcSToby Isaac   ldy  = *_ldy;
7034396437dSToby Isaac   nrhs = *_nrhs;
7049566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(X, &_ldx));
7059566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldx, &ldx));
706bf5a80bcSToby Isaac   if (ldx != ldy) {
7074905a7bcSToby Isaac     PetscScalar *xv;
7089566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(X, &xv));
70948a46eb9SPierre Jolivet     for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&xv[j * ldx], &y[j * ldy], k));
7109566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(X, &xv));
7119566063dSJacob Faibussowitsch     PetscCall(PetscFree(y));
7124905a7bcSToby Isaac   } else {
7139566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(X, &y));
7144905a7bcSToby Isaac   }
7153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71685e2c93fSHong Zhang }
71785e2c93fSHong Zhang 
718d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X)
719d71ae5a4SJacob Faibussowitsch {
7204396437dSToby Isaac   PetscScalar *y;
721bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7224396437dSToby Isaac 
7234396437dSToby Isaac   PetscFunctionBegin;
7249566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7259566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_FALSE));
7269566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7284396437dSToby Isaac }
7294396437dSToby Isaac 
730d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X)
731d71ae5a4SJacob Faibussowitsch {
7324396437dSToby Isaac   PetscScalar *y;
733bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7344396437dSToby Isaac 
7354396437dSToby Isaac   PetscFunctionBegin;
7369566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7379566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_TRUE));
7389566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7404396437dSToby Isaac }
7414396437dSToby Isaac 
742d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X)
743d71ae5a4SJacob Faibussowitsch {
7444396437dSToby Isaac   PetscScalar *y;
745bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7464396437dSToby Isaac 
7474396437dSToby Isaac   PetscFunctionBegin;
7489566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7499566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_FALSE));
7509566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7524396437dSToby Isaac }
7534396437dSToby Isaac 
754d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X)
755d71ae5a4SJacob Faibussowitsch {
7564396437dSToby Isaac   PetscScalar *y;
757bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7584396437dSToby Isaac 
7594396437dSToby Isaac   PetscFunctionBegin;
7609566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7619566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_TRUE));
7629566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7644396437dSToby Isaac }
7654396437dSToby Isaac 
766d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X)
767d71ae5a4SJacob Faibussowitsch {
7684396437dSToby Isaac   PetscScalar *y;
769bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7704396437dSToby Isaac 
7714396437dSToby Isaac   PetscFunctionBegin;
7729566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7739566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k));
7749566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7764396437dSToby Isaac }
7774396437dSToby Isaac 
778d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X)
779d71ae5a4SJacob Faibussowitsch {
7804396437dSToby Isaac   PetscScalar *y;
781bf5a80bcSToby Isaac   PetscBLASInt m, k, ldy, nrhs;
7824396437dSToby Isaac 
7834396437dSToby Isaac   PetscFunctionBegin;
7849566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7859566063dSJacob Faibussowitsch   PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k));
7869566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7884396437dSToby Isaac }
7894396437dSToby Isaac 
790db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
791db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
792d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactor_SeqDense(Mat A, IS row, IS col, const MatFactorInfo *minfo)
793d71ae5a4SJacob Faibussowitsch {
794db4efbfdSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
795db4efbfdSBarry Smith   PetscBLASInt  n, m, info;
796db4efbfdSBarry Smith 
797db4efbfdSBarry Smith   PetscFunctionBegin;
7989566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &n));
7999566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
8004dfa11a4SJacob Faibussowitsch   if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); }
8013ba16761SJacob Faibussowitsch   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
8029566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
803792fecdfSBarry Smith   PetscCallBLAS("LAPACKgetrf", LAPACKgetrf_(&m, &n, mat->v, &mat->lda, mat->pivots, &info));
8049566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
8058e57ea43SSatish Balay 
806835f2295SStefano Zampini   PetscCheck(info >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to LU factorization %" PetscBLASInt_FMT, info);
807835f2295SStefano Zampini   PetscCheck(info <= 0, PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Bad LU factorization %" PetscBLASInt_FMT, info);
8088208b9aeSStefano Zampini 
8094396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_LU;
8104396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_LU;
8114396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8124396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU;
813d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
814db4efbfdSBarry Smith 
8159566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
8169566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype));
817f6224b95SHong Zhang 
8189566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops((2.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3));
8193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
820db4efbfdSBarry Smith }
821db4efbfdSBarry Smith 
822d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy)
823d71ae5a4SJacob Faibussowitsch {
8244396437dSToby Isaac   MatFactorInfo info;
8254396437dSToby Isaac 
8264396437dSToby Isaac   PetscFunctionBegin;
8279566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES));
828dbbe0bcdSBarry Smith   PetscUseTypeMethod(fact, lufactor, NULL, NULL, &info);
8293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8304396437dSToby Isaac }
8314396437dSToby Isaac 
832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, IS col, const MatFactorInfo *info)
833d71ae5a4SJacob Faibussowitsch {
8344396437dSToby Isaac   PetscFunctionBegin;
8354396437dSToby Isaac   fact->preallocated         = PETSC_TRUE;
8364396437dSToby Isaac   fact->assembled            = PETSC_TRUE;
8374396437dSToby Isaac   fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense;
8383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8394396437dSToby Isaac }
8404396437dSToby Isaac 
841a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
842d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactor_SeqDense(Mat A, IS perm, const MatFactorInfo *factinfo)
843d71ae5a4SJacob Faibussowitsch {
844db4efbfdSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
845c5df96a5SBarry Smith   PetscBLASInt  info, n;
846db4efbfdSBarry Smith 
847db4efbfdSBarry Smith   PetscFunctionBegin;
8489566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &n));
8493ba16761SJacob Faibussowitsch   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
850b94d7dedSBarry Smith   if (A->spd == PETSC_BOOL3_TRUE) {
8519566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
852792fecdfSBarry Smith     PetscCallBLAS("LAPACKpotrf", LAPACKpotrf_("L", &n, mat->v, &mat->lda, &info));
8539566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
854a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
855b94d7dedSBarry Smith   } else if (A->hermitian == PETSC_BOOL3_TRUE) {
8564dfa11a4SJacob Faibussowitsch     if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); }
857a49dc2a2SStefano Zampini     if (!mat->fwork) {
858a49dc2a2SStefano Zampini       PetscScalar dummy;
859a49dc2a2SStefano Zampini 
860a49dc2a2SStefano Zampini       mat->lfwork = -1;
8619566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
862792fecdfSBarry Smith       PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info));
8639566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
86407c83e99SJose E. Roman       PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork));
8659566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
866a49dc2a2SStefano Zampini     }
8679566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
868792fecdfSBarry Smith     PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info));
8699566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
870a49dc2a2SStefano Zampini #endif
871a49dc2a2SStefano Zampini   } else { /* symmetric case */
8724dfa11a4SJacob Faibussowitsch     if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); }
873a49dc2a2SStefano Zampini     if (!mat->fwork) {
874a49dc2a2SStefano Zampini       PetscScalar dummy;
875a49dc2a2SStefano Zampini 
876a49dc2a2SStefano Zampini       mat->lfwork = -1;
8779566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
878792fecdfSBarry Smith       PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info));
8799566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
8806497c311SBarry Smith       PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork));
8819566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
882a49dc2a2SStefano Zampini     }
8839566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
884792fecdfSBarry Smith     PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info));
8859566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
886a49dc2a2SStefano Zampini   }
887835f2295SStefano Zampini   PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad factorization: zero pivot in row %" PetscBLASInt_FMT, info - 1);
8888208b9aeSStefano Zampini 
8894396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_Cholesky;
8904396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_Cholesky;
8914396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_Cholesky;
8924396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky;
893d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
8942205254eSKarl Rupp 
8959566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
8969566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype));
897f6224b95SHong Zhang 
8989566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0));
8993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
900db4efbfdSBarry Smith }
901db4efbfdSBarry Smith 
902d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy)
903d71ae5a4SJacob Faibussowitsch {
904db4efbfdSBarry Smith   MatFactorInfo info;
905db4efbfdSBarry Smith 
906db4efbfdSBarry Smith   PetscFunctionBegin;
907db4efbfdSBarry Smith   info.fill = 1.0;
9082205254eSKarl Rupp 
9099566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES));
910dbbe0bcdSBarry Smith   PetscUseTypeMethod(fact, choleskyfactor, NULL, &info);
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
912db4efbfdSBarry Smith }
913db4efbfdSBarry Smith 
914d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info)
915d71ae5a4SJacob Faibussowitsch {
916db4efbfdSBarry Smith   PetscFunctionBegin;
917c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
9181bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
919719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
9203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
921db4efbfdSBarry Smith }
922db4efbfdSBarry Smith 
923d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactor_SeqDense(Mat A, IS col, const MatFactorInfo *minfo)
924d71ae5a4SJacob Faibussowitsch {
9254905a7bcSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
9264905a7bcSToby Isaac   PetscBLASInt  n, m, info, min, max;
9274905a7bcSToby Isaac 
9284905a7bcSToby Isaac   PetscFunctionBegin;
9299566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &n));
9309566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
9314396437dSToby Isaac   max = PetscMax(m, n);
9324396437dSToby Isaac   min = PetscMin(m, n);
9334dfa11a4SJacob Faibussowitsch   if (!mat->tau) { PetscCall(PetscMalloc1(min, &mat->tau)); }
9344dfa11a4SJacob Faibussowitsch   if (!mat->pivots) { PetscCall(PetscMalloc1(n, &mat->pivots)); }
935f4f49eeaSPierre Jolivet   if (!mat->qrrhs) PetscCall(MatCreateVecs(A, NULL, &mat->qrrhs));
9363ba16761SJacob Faibussowitsch   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS);
9374905a7bcSToby Isaac   if (!mat->fwork) {
9384905a7bcSToby Isaac     PetscScalar dummy;
9394905a7bcSToby Isaac 
9404905a7bcSToby Isaac     mat->lfwork = -1;
9419566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
942792fecdfSBarry Smith     PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, &dummy, &mat->lfwork, &info));
9439566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
9446497c311SBarry Smith     PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork));
9459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork));
9464905a7bcSToby Isaac   }
9479566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
948792fecdfSBarry Smith   PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, mat->fwork, &mat->lfwork, &info));
9499566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
950835f2295SStefano Zampini   PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to QR factorization %" PetscBLASInt_FMT, info);
9514905a7bcSToby Isaac   // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR.  For now just say rank is min of m and n
9524905a7bcSToby Isaac   mat->rank = min;
9534905a7bcSToby Isaac 
9544396437dSToby Isaac   A->ops->solve    = MatSolve_SeqDense_QR;
9554396437dSToby Isaac   A->ops->matsolve = MatMatSolve_SeqDense_QR;
9564905a7bcSToby Isaac   A->factortype    = MAT_FACTOR_QR;
9574905a7bcSToby Isaac   if (m == n) {
9584396437dSToby Isaac     A->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
9594396437dSToby Isaac     A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
9604905a7bcSToby Isaac   }
9614905a7bcSToby Isaac 
9629566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
9639566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype));
9644905a7bcSToby Isaac 
9659566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * min * min * (max - min / 3.0)));
9663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9674905a7bcSToby Isaac }
9684905a7bcSToby Isaac 
969d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy)
970d71ae5a4SJacob Faibussowitsch {
9714905a7bcSToby Isaac   MatFactorInfo info;
9724905a7bcSToby Isaac 
9734905a7bcSToby Isaac   PetscFunctionBegin;
9744905a7bcSToby Isaac   info.fill = 1.0;
9754905a7bcSToby Isaac 
9769566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES));
977cac4c232SBarry Smith   PetscUseMethod(fact, "MatQRFactor_C", (Mat, IS, const MatFactorInfo *), (fact, NULL, &info));
9783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9794905a7bcSToby Isaac }
9804905a7bcSToby Isaac 
981d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info)
982d71ae5a4SJacob Faibussowitsch {
9834905a7bcSToby Isaac   PetscFunctionBegin;
9844905a7bcSToby Isaac   fact->assembled    = PETSC_TRUE;
9854905a7bcSToby Isaac   fact->preallocated = PETSC_TRUE;
9869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)fact, "MatQRFactorNumeric_C", MatQRFactorNumeric_SeqDense));
9873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9884905a7bcSToby Isaac }
9894905a7bcSToby Isaac 
990ca15aa20SStefano Zampini /* uses LAPACK */
991d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A, MatFactorType ftype, Mat *fact)
992d71ae5a4SJacob Faibussowitsch {
993db4efbfdSBarry Smith   PetscFunctionBegin;
9949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), fact));
9959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*fact, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
9969566063dSJacob Faibussowitsch   PetscCall(MatSetType(*fact, MATDENSE));
99766e17bc3SBarry Smith   (*fact)->trivialsymbolic = PETSC_TRUE;
9982a350339SBarry Smith   if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) {
999db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic  = MatLUFactorSymbolic_SeqDense;
10002a350339SBarry Smith     (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense;
1001bf5a80bcSToby Isaac   } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) {
1002db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
1003bf5a80bcSToby Isaac   } else if (ftype == MAT_FACTOR_QR) {
1004f4f49eeaSPierre Jolivet     PetscCall(PetscObjectComposeFunction((PetscObject)*fact, "MatQRFactorSymbolic_C", MatQRFactorSymbolic_SeqDense));
1005db4efbfdSBarry Smith   }
1006d5f3da31SBarry Smith   (*fact)->factortype = ftype;
100700c67f3bSHong Zhang 
10089566063dSJacob Faibussowitsch   PetscCall(PetscFree((*fact)->solvertype));
10099566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &(*fact)->solvertype));
10109566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_LU]));
10119566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ILU]));
10129566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY]));
10139566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ICC]));
10143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1015db4efbfdSBarry Smith }
1016db4efbfdSBarry Smith 
1017d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSOR_SeqDense(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec xx)
1018d71ae5a4SJacob Faibussowitsch {
1019c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
1020d9ca1df4SBarry Smith   PetscScalar       *x, *v = mat->v, zero = 0.0, xt;
1021d9ca1df4SBarry Smith   const PetscScalar *b;
1022d0f46423SBarry Smith   PetscInt           m = A->rmap->n, i;
102323fff9afSBarry Smith   PetscBLASInt       o = 1, bm = 0;
1024289bc588SBarry Smith 
10253a40ed3dSBarry Smith   PetscFunctionBegin;
102647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
102708401ef6SPierre Jolivet   PetscCheck(A->offloadmask != PETSC_OFFLOAD_GPU, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not implemented");
1028ca15aa20SStefano Zampini #endif
1029422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
10309566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(m, &bm));
1031289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
10323bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
10339566063dSJacob Faibussowitsch     PetscCall(VecSet(xx, zero));
1034289bc588SBarry Smith   }
10359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
10369566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
1037b965ef7fSBarry Smith   its = its * lits;
103808401ef6SPierre Jolivet   PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
1039289bc588SBarry Smith   while (its--) {
1040fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1041289bc588SBarry Smith       for (i = 0; i < m; i++) {
1042792fecdfSBarry Smith         PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o));
104355a1b374SBarry Smith         x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift);
1044289bc588SBarry Smith       }
1045289bc588SBarry Smith     }
1046fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1047289bc588SBarry Smith       for (i = m - 1; i >= 0; i--) {
1048792fecdfSBarry Smith         PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o));
104955a1b374SBarry Smith         x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift);
1050289bc588SBarry Smith       }
1051289bc588SBarry Smith     }
1052289bc588SBarry Smith   }
10539566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
10549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
10553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1056289bc588SBarry Smith }
1057289bc588SBarry Smith 
10580be0d8bdSHansol Suh static PetscErrorCode MatMultColumnRangeKernel_SeqDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end, PetscBool trans, PetscBool herm)
1059d71ae5a4SJacob Faibussowitsch {
1060c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
1061d9ca1df4SBarry Smith   PetscScalar       *y, _DOne = 1.0, _DZero = 0.0;
10620805154bSBarry Smith   PetscBLASInt       m, n, _One             = 1;
1063d9ca1df4SBarry Smith   const PetscScalar *v = mat->v, *x;
10643a40ed3dSBarry Smith 
10653a40ed3dSBarry Smith   PetscFunctionBegin;
10669566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
10670be0d8bdSHansol Suh   PetscCall(PetscBLASIntCast(c_end - c_start, &n));
10689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
10699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(yy, &y));
10700be0d8bdSHansol Suh   if (!m || !n) {
10715ac36cfcSBarry Smith     PetscBLASInt i;
1072459e8d23SBlanca Mellado Pinto     if (trans)
1073459e8d23SBlanca Mellado Pinto       for (i = 0; i < n; i++) y[i] = 0.0;
1074459e8d23SBlanca Mellado Pinto     else
10755ac36cfcSBarry Smith       for (i = 0; i < m; i++) y[i] = 0.0;
10765ac36cfcSBarry Smith   } else {
1077459e8d23SBlanca Mellado Pinto     if (trans) {
10780be0d8bdSHansol Suh       if (herm) PetscCallBLAS("BLASgemv", BLASgemv_("C", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DZero, y + c_start, &_One));
10790be0d8bdSHansol Suh       else PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DZero, y + c_start, &_One));
1080459e8d23SBlanca Mellado Pinto     } else {
10810be0d8bdSHansol Suh       PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x + c_start, &_One, &_DZero, y, &_One));
1082459e8d23SBlanca Mellado Pinto     }
10830be0d8bdSHansol Suh     PetscCall(PetscLogFlops(2.0 * m * n - n));
10845ac36cfcSBarry Smith   }
10859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
10869566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(yy, &y));
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088289bc588SBarry Smith }
10896ee01492SSatish Balay 
10900be0d8bdSHansol Suh PetscErrorCode MatMultHermitianTransposeColumnRange_SeqDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end)
10910be0d8bdSHansol Suh {
10920be0d8bdSHansol Suh   PetscFunctionBegin;
10930be0d8bdSHansol Suh   PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, c_start, c_end, PETSC_TRUE, PETSC_TRUE));
10940be0d8bdSHansol Suh   PetscFunctionReturn(PETSC_SUCCESS);
10950be0d8bdSHansol Suh }
10960be0d8bdSHansol Suh 
1097459e8d23SBlanca Mellado Pinto PetscErrorCode MatMult_SeqDense(Mat A, Vec xx, Vec yy)
1098459e8d23SBlanca Mellado Pinto {
1099459e8d23SBlanca Mellado Pinto   PetscFunctionBegin;
11000be0d8bdSHansol Suh   PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_FALSE, PETSC_FALSE));
1101459e8d23SBlanca Mellado Pinto   PetscFunctionReturn(PETSC_SUCCESS);
1102459e8d23SBlanca Mellado Pinto }
1103459e8d23SBlanca Mellado Pinto 
1104459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultTranspose_SeqDense(Mat A, Vec xx, Vec yy)
1105459e8d23SBlanca Mellado Pinto {
1106459e8d23SBlanca Mellado Pinto   PetscFunctionBegin;
11070be0d8bdSHansol Suh   PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_FALSE));
1108459e8d23SBlanca Mellado Pinto   PetscFunctionReturn(PETSC_SUCCESS);
1109459e8d23SBlanca Mellado Pinto }
1110459e8d23SBlanca Mellado Pinto 
1111459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultHermitianTranspose_SeqDense(Mat A, Vec xx, Vec yy)
1112459e8d23SBlanca Mellado Pinto {
1113459e8d23SBlanca Mellado Pinto   PetscFunctionBegin;
11140be0d8bdSHansol Suh   PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_TRUE));
1115459e8d23SBlanca Mellado Pinto   PetscFunctionReturn(PETSC_SUCCESS);
1116459e8d23SBlanca Mellado Pinto }
1117459e8d23SBlanca Mellado Pinto 
11180be0d8bdSHansol Suh static PetscErrorCode MatMultAddColumnRangeKernel_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end, PetscBool trans, PetscBool herm)
1119d71ae5a4SJacob Faibussowitsch {
1120c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
1121d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v, *x;
1122d9ca1df4SBarry Smith   PetscScalar       *y, _DOne = 1.0;
11230805154bSBarry Smith   PetscBLASInt       m, n, _One = 1;
11243a40ed3dSBarry Smith 
11253a40ed3dSBarry Smith   PetscFunctionBegin;
11269566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &m));
11270be0d8bdSHansol Suh   PetscCall(PetscBLASIntCast(c_end - c_start, &n));
11289566063dSJacob Faibussowitsch   PetscCall(VecCopy(zz, yy));
11290be0d8bdSHansol Suh   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS);
11309566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy, &y));
1131459e8d23SBlanca Mellado Pinto   PetscCall(VecGetArrayRead(xx, &x));
1132459e8d23SBlanca Mellado Pinto   if (trans) {
11330be0d8bdSHansol Suh     if (herm) PetscCallBLAS("BLASgemv", BLASgemv_("C", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DOne, y + c_start, &_One));
11340be0d8bdSHansol Suh     else PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DOne, y + c_start, &_One));
1135459e8d23SBlanca Mellado Pinto   } else {
11360be0d8bdSHansol Suh     PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x + c_start, &_One, &_DOne, y, &_One));
1137459e8d23SBlanca Mellado Pinto   }
11389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy, &y));
11400be0d8bdSHansol Suh   PetscCall(PetscLogFlops(2.0 * m * n));
11410be0d8bdSHansol Suh   PetscFunctionReturn(PETSC_SUCCESS);
11420be0d8bdSHansol Suh }
11430be0d8bdSHansol Suh 
11440be0d8bdSHansol Suh PetscErrorCode MatMultAddColumnRange_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end)
11450be0d8bdSHansol Suh {
11460be0d8bdSHansol Suh   PetscFunctionBegin;
11470be0d8bdSHansol Suh   PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, c_start, c_end, PETSC_FALSE, PETSC_FALSE));
11480be0d8bdSHansol Suh   PetscFunctionReturn(PETSC_SUCCESS);
11490be0d8bdSHansol Suh }
11500be0d8bdSHansol Suh 
11510be0d8bdSHansol Suh PetscErrorCode MatMultHermitianTransposeAddColumnRange_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end)
11520be0d8bdSHansol Suh {
11530be0d8bdSHansol Suh   PetscFunctionBegin;
11540be0d8bdSHansol Suh   PetscMPIInt rank;
11550be0d8bdSHansol Suh   PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &rank));
11560be0d8bdSHansol Suh   PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, c_start, c_end, PETSC_TRUE, PETSC_TRUE));
11573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1158289bc588SBarry Smith }
11596ee01492SSatish Balay 
1160459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy)
1161459e8d23SBlanca Mellado Pinto {
1162459e8d23SBlanca Mellado Pinto   PetscFunctionBegin;
11630be0d8bdSHansol Suh   PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_FALSE, PETSC_FALSE));
1164459e8d23SBlanca Mellado Pinto   PetscFunctionReturn(PETSC_SUCCESS);
1165459e8d23SBlanca Mellado Pinto }
1166459e8d23SBlanca Mellado Pinto 
1167d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy)
1168d71ae5a4SJacob Faibussowitsch {
11693a40ed3dSBarry Smith   PetscFunctionBegin;
11700be0d8bdSHansol Suh   PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_FALSE));
1171459e8d23SBlanca Mellado Pinto   PetscFunctionReturn(PETSC_SUCCESS);
1172459e8d23SBlanca Mellado Pinto }
1173459e8d23SBlanca Mellado Pinto 
1174459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultHermitianTransposeAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy)
1175459e8d23SBlanca Mellado Pinto {
1176459e8d23SBlanca Mellado Pinto   PetscFunctionBegin;
11770be0d8bdSHansol Suh   PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_TRUE));
11783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1179289bc588SBarry Smith }
1180289bc588SBarry Smith 
1181d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals)
1182d71ae5a4SJacob Faibussowitsch {
1183c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
118413f74950SBarry Smith   PetscInt      i;
118567e560aaSBarry Smith 
11863a40ed3dSBarry Smith   PetscFunctionBegin;
1187c3e1b152SPierre Jolivet   if (ncols) *ncols = A->cmap->n;
1188289bc588SBarry Smith   if (cols) {
11899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(A->cmap->n, cols));
1190d0f46423SBarry Smith     for (i = 0; i < A->cmap->n; i++) (*cols)[i] = i;
1191289bc588SBarry Smith   }
1192289bc588SBarry Smith   if (vals) {
1193ca15aa20SStefano Zampini     const PetscScalar *v;
1194ca15aa20SStefano Zampini 
11959566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A, &v));
11969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(A->cmap->n, vals));
1197ca15aa20SStefano Zampini     v += row;
11989371c9d4SSatish Balay     for (i = 0; i < A->cmap->n; i++) {
11999371c9d4SSatish Balay       (*vals)[i] = *v;
12009371c9d4SSatish Balay       v += mat->lda;
12019371c9d4SSatish Balay     }
12029566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A, &v));
1203289bc588SBarry Smith   }
12043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1205289bc588SBarry Smith }
12066ee01492SSatish Balay 
1207d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals)
1208d71ae5a4SJacob Faibussowitsch {
1209606d414cSSatish Balay   PetscFunctionBegin;
12109566063dSJacob Faibussowitsch   if (cols) PetscCall(PetscFree(*cols));
12119566063dSJacob Faibussowitsch   if (vals) PetscCall(PetscFree(*vals));
12123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1213289bc588SBarry Smith }
12142ef1f0ffSBarry Smith 
1215d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], const PetscScalar v[], InsertMode addv)
1216d71ae5a4SJacob Faibussowitsch {
1217c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
1218ca15aa20SStefano Zampini   PetscScalar  *av;
121913f74950SBarry Smith   PetscInt      i, j, idx = 0;
122047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1221c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
1222ca15aa20SStefano Zampini #endif
1223d6dfbf8fSBarry Smith 
12243a40ed3dSBarry Smith   PetscFunctionBegin;
12259566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &av));
1226289bc588SBarry Smith   if (!mat->roworiented) {
1227dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1228289bc588SBarry Smith       for (j = 0; j < n; j++) {
12299371c9d4SSatish Balay         if (indexn[j] < 0) {
12309371c9d4SSatish Balay           idx += m;
12319371c9d4SSatish Balay           continue;
12329371c9d4SSatish Balay         }
12336bdcaf15SBarry Smith         PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1);
1234289bc588SBarry Smith         for (i = 0; i < m; i++) {
12359371c9d4SSatish Balay           if (indexm[i] < 0) {
12369371c9d4SSatish Balay             idx++;
12379371c9d4SSatish Balay             continue;
12389371c9d4SSatish Balay           }
12396bdcaf15SBarry Smith           PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1);
12408c4a67a0SStefano Zampini           av[indexn[j] * mat->lda + indexm[i]] = v ? v[idx++] : (idx++, 0.0);
1241289bc588SBarry Smith         }
1242289bc588SBarry Smith       }
12430be0d8bdSHansol Suh     } else {
1244289bc588SBarry Smith       for (j = 0; j < n; j++) {
12459371c9d4SSatish Balay         if (indexn[j] < 0) {
12469371c9d4SSatish Balay           idx += m;
12479371c9d4SSatish Balay           continue;
12489371c9d4SSatish Balay         }
12496bdcaf15SBarry Smith         PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1);
1250289bc588SBarry Smith         for (i = 0; i < m; i++) {
12519371c9d4SSatish Balay           if (indexm[i] < 0) {
12529371c9d4SSatish Balay             idx++;
12539371c9d4SSatish Balay             continue;
12549371c9d4SSatish Balay           }
12556bdcaf15SBarry Smith           PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1);
12568c4a67a0SStefano Zampini           av[indexn[j] * mat->lda + indexm[i]] += v ? v[idx++] : (idx++, 0.0);
1257289bc588SBarry Smith         }
1258289bc588SBarry Smith       }
1259289bc588SBarry Smith     }
12603a40ed3dSBarry Smith   } else {
1261dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1262e8d4e0b9SBarry Smith       for (i = 0; i < m; i++) {
12639371c9d4SSatish Balay         if (indexm[i] < 0) {
12649371c9d4SSatish Balay           idx += n;
12659371c9d4SSatish Balay           continue;
12669371c9d4SSatish Balay         }
12676bdcaf15SBarry Smith         PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1);
1268e8d4e0b9SBarry Smith         for (j = 0; j < n; j++) {
12699371c9d4SSatish Balay           if (indexn[j] < 0) {
12709371c9d4SSatish Balay             idx++;
12719371c9d4SSatish Balay             continue;
12729371c9d4SSatish Balay           }
12736bdcaf15SBarry Smith           PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1);
12748c4a67a0SStefano Zampini           av[indexn[j] * mat->lda + indexm[i]] = v ? v[idx++] : (idx++, 0.0);
1275e8d4e0b9SBarry Smith         }
1276e8d4e0b9SBarry Smith       }
12770be0d8bdSHansol Suh     } else {
1278289bc588SBarry Smith       for (i = 0; i < m; i++) {
12799371c9d4SSatish Balay         if (indexm[i] < 0) {
12809371c9d4SSatish Balay           idx += n;
12819371c9d4SSatish Balay           continue;
12829371c9d4SSatish Balay         }
12836bdcaf15SBarry Smith         PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1);
1284289bc588SBarry Smith         for (j = 0; j < n; j++) {
12859371c9d4SSatish Balay           if (indexn[j] < 0) {
12869371c9d4SSatish Balay             idx++;
12879371c9d4SSatish Balay             continue;
12889371c9d4SSatish Balay           }
12896bdcaf15SBarry Smith           PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1);
12908c4a67a0SStefano Zampini           av[indexn[j] * mat->lda + indexm[i]] += v ? v[idx++] : (idx++, 0.0);
1291289bc588SBarry Smith         }
1292289bc588SBarry Smith       }
1293289bc588SBarry Smith     }
1294e8d4e0b9SBarry Smith   }
1295ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
129647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1297c70f7ee4SJunchao Zhang   oldf           = A->offloadmask;
1298c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
1299ca15aa20SStefano Zampini #endif
13009566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &av));
130147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1302c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1303ca15aa20SStefano Zampini #endif
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1305289bc588SBarry Smith }
1306e8d4e0b9SBarry Smith 
1307d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], PetscScalar v[])
1308d71ae5a4SJacob Faibussowitsch {
1309ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
1310ca15aa20SStefano Zampini   const PetscScalar *vv;
131113f74950SBarry Smith   PetscInt           i, j;
1312ae80bb75SLois Curfman McInnes 
13133a40ed3dSBarry Smith   PetscFunctionBegin;
13149566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &vv));
1315ae80bb75SLois Curfman McInnes   /* row-oriented output */
1316ae80bb75SLois Curfman McInnes   for (i = 0; i < m; i++) {
13179371c9d4SSatish Balay     if (indexm[i] < 0) {
13189371c9d4SSatish Balay       v += n;
13199371c9d4SSatish Balay       continue;
13209371c9d4SSatish Balay     }
132108401ef6SPierre Jolivet     PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested larger than number rows %" PetscInt_FMT, indexm[i], A->rmap->n);
1322ae80bb75SLois Curfman McInnes     for (j = 0; j < n; j++) {
13239371c9d4SSatish Balay       if (indexn[j] < 0) {
13249371c9d4SSatish Balay         v++;
13259371c9d4SSatish Balay         continue;
13269371c9d4SSatish Balay       }
132708401ef6SPierre Jolivet       PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column %" PetscInt_FMT " requested larger than number columns %" PetscInt_FMT, indexn[j], A->cmap->n);
1328ca15aa20SStefano Zampini       *v++ = vv[indexn[j] * mat->lda + indexm[i]];
1329ae80bb75SLois Curfman McInnes     }
1330ae80bb75SLois Curfman McInnes   }
13319566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &vv));
13323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1333ae80bb75SLois Curfman McInnes }
1334ae80bb75SLois Curfman McInnes 
1335d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_Dense_Binary(Mat mat, PetscViewer viewer)
1336d71ae5a4SJacob Faibussowitsch {
13378491ab44SLisandro Dalcin   PetscBool          skipHeader;
13388491ab44SLisandro Dalcin   PetscViewerFormat  format;
13393e1d7bceSPierre Jolivet   PetscInt           header[4], M, N, m, lda, i, j;
13403e1d7bceSPierre Jolivet   PetscCount         k;
13418491ab44SLisandro Dalcin   const PetscScalar *v;
13428491ab44SLisandro Dalcin   PetscScalar       *vwork;
1343aabbc4fbSShri Abhyankar 
1344aabbc4fbSShri Abhyankar   PetscFunctionBegin;
13459566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
13469566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader));
13479566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
13488491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1349aabbc4fbSShri Abhyankar 
13509566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
13518491ab44SLisandro Dalcin 
13528491ab44SLisandro Dalcin   /* write matrix header */
13539371c9d4SSatish Balay   header[0] = MAT_FILE_CLASSID;
13549371c9d4SSatish Balay   header[1] = M;
13559371c9d4SSatish Balay   header[2] = N;
13568491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M * N;
13579566063dSJacob Faibussowitsch   if (!skipHeader) PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
13588491ab44SLisandro Dalcin 
13599566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
13608491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
13618491ab44SLisandro Dalcin     PetscInt nnz = m * N, *iwork;
13628491ab44SLisandro Dalcin     /* store row lengths for each row */
13639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nnz, &iwork));
13648491ab44SLisandro Dalcin     for (i = 0; i < m; i++) iwork[i] = N;
13659566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
13668491ab44SLisandro Dalcin     /* store column indices (zero start index) */
13678491ab44SLisandro Dalcin     for (k = 0, i = 0; i < m; i++)
13689371c9d4SSatish Balay       for (j = 0; j < N; j++, k++) iwork[k] = j;
13699566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
13709566063dSJacob Faibussowitsch     PetscCall(PetscFree(iwork));
13718491ab44SLisandro Dalcin   }
13728491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
13739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m * N, &vwork));
13749566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(mat, &v));
13759566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(mat, &lda));
13768491ab44SLisandro Dalcin   for (k = 0, i = 0; i < m; i++)
13773e1d7bceSPierre Jolivet     for (j = 0; j < N; j++, k++) vwork[k] = v[i + (size_t)lda * j];
13789566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(mat, &v));
13799566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, vwork, m * N, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
13809566063dSJacob Faibussowitsch   PetscCall(PetscFree(vwork));
13813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13828491ab44SLisandro Dalcin }
13838491ab44SLisandro Dalcin 
1384d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_Dense_Binary(Mat mat, PetscViewer viewer)
1385d71ae5a4SJacob Faibussowitsch {
13868491ab44SLisandro Dalcin   PetscBool    skipHeader;
13878491ab44SLisandro Dalcin   PetscInt     header[4], M, N, m, nz, lda, i, j, k;
13888491ab44SLisandro Dalcin   PetscInt     rows, cols;
13898491ab44SLisandro Dalcin   PetscScalar *v, *vwork;
13908491ab44SLisandro Dalcin 
13918491ab44SLisandro Dalcin   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
13939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader));
13948491ab44SLisandro Dalcin 
13958491ab44SLisandro Dalcin   if (!skipHeader) {
13969566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
139708401ef6SPierre Jolivet     PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
13989371c9d4SSatish Balay     M = header[1];
13999371c9d4SSatish Balay     N = header[2];
140008401ef6SPierre Jolivet     PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
140108401ef6SPierre Jolivet     PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
14028491ab44SLisandro Dalcin     nz = header[3];
1403aed4548fSBarry Smith     PetscCheck(nz == MATRIX_BINARY_FORMAT_DENSE || nz >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Unknown matrix format %" PetscInt_FMT " in file", nz);
1404aabbc4fbSShri Abhyankar   } else {
14059566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, &M, &N));
1406aed4548fSBarry Smith     PetscCheck(M >= 0 && N >= 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
14078491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1408e6324fbbSBarry Smith   }
1409aabbc4fbSShri Abhyankar 
14108491ab44SLisandro Dalcin   /* setup global sizes if not set */
14118491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
14128491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
14139566063dSJacob Faibussowitsch   PetscCall(MatSetUp(mat));
14148491ab44SLisandro Dalcin   /* check if global sizes are correct */
14159566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
1416aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
1417aabbc4fbSShri Abhyankar 
14189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, NULL, &N));
14199566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
14209566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(mat, &v));
14219566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(mat, &lda));
14228491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense format */
14233e1d7bceSPierre Jolivet     PetscCount nnz = (size_t)m * N;
14248491ab44SLisandro Dalcin     /* read in matrix values */
14259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nnz, &vwork));
14269566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
14278491ab44SLisandro Dalcin     /* store values in column major order */
14288491ab44SLisandro Dalcin     for (j = 0; j < N; j++)
14293e1d7bceSPierre Jolivet       for (i = 0; i < m; i++) v[i + (size_t)lda * j] = vwork[(size_t)i * N + j];
14309566063dSJacob Faibussowitsch     PetscCall(PetscFree(vwork));
14318491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
14328491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
14338491ab44SLisandro Dalcin     /* read in row lengths */
14349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &rlens));
14359566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer, rlens, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
14368491ab44SLisandro Dalcin     for (i = 0; i < m; i++) nnz += rlens[i];
14378491ab44SLisandro Dalcin     /* read in column indices and values */
14389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nnz, &icols, nnz, &vwork));
14399566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer, icols, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
14409566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
14418491ab44SLisandro Dalcin     /* store values in column major order */
14428491ab44SLisandro Dalcin     for (k = 0, i = 0; i < m; i++)
14439371c9d4SSatish Balay       for (j = 0; j < rlens[i]; j++, k++) v[i + lda * icols[k]] = vwork[k];
14449566063dSJacob Faibussowitsch     PetscCall(PetscFree(rlens));
14459566063dSJacob Faibussowitsch     PetscCall(PetscFree2(icols, vwork));
1446aabbc4fbSShri Abhyankar   }
14479566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(mat, &v));
14489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
14499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
14503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1451aabbc4fbSShri Abhyankar }
1452aabbc4fbSShri Abhyankar 
145366976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1454d71ae5a4SJacob Faibussowitsch {
1455eb91f321SVaclav Hapla   PetscBool isbinary, ishdf5;
1456eb91f321SVaclav Hapla 
1457eb91f321SVaclav Hapla   PetscFunctionBegin;
1458eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
1459eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
1460eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
14619566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
14629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14639566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
1464eb91f321SVaclav Hapla   if (isbinary) {
14659566063dSJacob Faibussowitsch     PetscCall(MatLoad_Dense_Binary(newMat, viewer));
1466eb91f321SVaclav Hapla   } else if (ishdf5) {
1467eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
14689566063dSJacob Faibussowitsch     PetscCall(MatLoad_Dense_HDF5(newMat, viewer));
1469eb91f321SVaclav Hapla #else
1470eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1471eb91f321SVaclav Hapla #endif
1472eb91f321SVaclav Hapla   } else {
147398921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
1474eb91f321SVaclav Hapla   }
14753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1476eb91f321SVaclav Hapla }
1477eb91f321SVaclav Hapla 
1478d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_ASCII(Mat A, PetscViewer viewer)
1479d71ae5a4SJacob Faibussowitsch {
1480932b0c3eSLois Curfman McInnes   Mat_SeqDense     *a = (Mat_SeqDense *)A->data;
148113f74950SBarry Smith   PetscInt          i, j;
14822dcb1b2aSMatthew Knepley   const char       *name;
1483ca15aa20SStefano Zampini   PetscScalar      *v, *av;
1484f3ef73ceSBarry Smith   PetscViewerFormat format;
14855f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1486ace3abfcSBarry Smith   PetscBool allreal = PETSC_TRUE;
14875f481a85SSatish Balay #endif
1488932b0c3eSLois Curfman McInnes 
14893a40ed3dSBarry Smith   PetscFunctionBegin;
14909566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&av));
14919566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1492456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
14933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS); /* do nothing for now */
1494fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
14959566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1496d0f46423SBarry Smith     for (i = 0; i < A->rmap->n; i++) {
1497ca15aa20SStefano Zampini       v = av + i;
14989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1499d0f46423SBarry Smith       for (j = 0; j < A->cmap->n; j++) {
1500aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1501329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
15029566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", j, (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v)));
1503329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
15049566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)PetscRealPart(*v)));
15056831982aSBarry Smith         }
150680cd9d93SLois Curfman McInnes #else
150748a46eb9SPierre Jolivet         if (*v) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)*v));
150880cd9d93SLois Curfman McInnes #endif
15091b807ce4Svictorle         v += a->lda;
151080cd9d93SLois Curfman McInnes       }
15119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
151280cd9d93SLois Curfman McInnes     }
15139566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
15143a40ed3dSBarry Smith   } else {
15159566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1516aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
151747989497SBarry Smith     /* determine if matrix has all real values */
1518bcd8d3a4SJose E. Roman     for (j = 0; j < A->cmap->n; j++) {
1519bcd8d3a4SJose E. Roman       v = av + j * a->lda;
1520bcd8d3a4SJose E. Roman       for (i = 0; i < A->rmap->n; i++) {
15219371c9d4SSatish Balay         if (PetscImaginaryPart(v[i])) {
15229371c9d4SSatish Balay           allreal = PETSC_FALSE;
15239371c9d4SSatish Balay           break;
15249371c9d4SSatish Balay         }
152547989497SBarry Smith       }
1526bcd8d3a4SJose E. Roman     }
152747989497SBarry Smith #endif
1528fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
15299566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)A, &name));
15309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", A->rmap->n, A->cmap->n));
15319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "%s = zeros(%" PetscInt_FMT ",%" PetscInt_FMT ");\n", name, A->rmap->n, A->cmap->n));
15329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "%s = [\n", name));
1533ffac6cdbSBarry Smith     }
1534ffac6cdbSBarry Smith 
1535d0f46423SBarry Smith     for (i = 0; i < A->rmap->n; i++) {
1536ca15aa20SStefano Zampini       v = av + i;
1537d0f46423SBarry Smith       for (j = 0; j < A->cmap->n; j++) {
1538aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
153947989497SBarry Smith         if (allreal) {
15409566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)PetscRealPart(*v)));
154147989497SBarry Smith         } else {
15429566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e + %18.16ei ", (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v)));
154347989497SBarry Smith         }
1544289bc588SBarry Smith #else
15459566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)*v));
1546289bc588SBarry Smith #endif
15471b807ce4Svictorle         v += a->lda;
1548289bc588SBarry Smith       }
15499566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1550289bc588SBarry Smith     }
155148a46eb9SPierre Jolivet     if (format == PETSC_VIEWER_ASCII_MATLAB) PetscCall(PetscViewerASCIIPrintf(viewer, "];\n"));
15529566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1553da3a660dSBarry Smith   }
15549566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&av));
15559566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
15563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1557289bc588SBarry Smith }
1558289bc588SBarry Smith 
15599804daf3SBarry Smith #include <petscdraw.h>
1560d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw, void *Aa)
1561d71ae5a4SJacob Faibussowitsch {
1562f1af5d2fSBarry Smith   Mat                A = (Mat)Aa;
1563383922c3SLisandro Dalcin   PetscInt           m = A->rmap->n, n = A->cmap->n, i, j;
1564383922c3SLisandro Dalcin   int                color = PETSC_DRAW_WHITE;
1565ca15aa20SStefano Zampini   const PetscScalar *v;
1566b0a32e0cSBarry Smith   PetscViewer        viewer;
1567b05fc000SLisandro Dalcin   PetscReal          xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1568f3ef73ceSBarry Smith   PetscViewerFormat  format;
1569f1af5d2fSBarry Smith 
1570f1af5d2fSBarry Smith   PetscFunctionBegin;
15719566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
15729566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
15739566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1574f1af5d2fSBarry Smith 
1575f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
15769566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &v));
1577fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1578d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1579f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1580f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
15819371c9d4SSatish Balay       x_l = j;
15829371c9d4SSatish Balay       x_r = x_l + 1.0;
1583f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1584f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1585f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1586ca15aa20SStefano Zampini         if (PetscRealPart(v[j * m + i]) > 0.) color = PETSC_DRAW_RED;
1587ca15aa20SStefano Zampini         else if (PetscRealPart(v[j * m + i]) < 0.) color = PETSC_DRAW_BLUE;
1588ca15aa20SStefano Zampini         else continue;
15899566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1590f1af5d2fSBarry Smith       }
1591f1af5d2fSBarry Smith     }
1592d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1593f1af5d2fSBarry Smith   } else {
1594f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1595f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1596b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1597b05fc000SLisandro Dalcin     PetscDraw popup;
1598b05fc000SLisandro Dalcin 
1599f1af5d2fSBarry Smith     for (i = 0; i < m * n; i++) {
1600f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1601f1af5d2fSBarry Smith     }
1602383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
16039566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
16049566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1605383922c3SLisandro Dalcin 
1606d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1607f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1608f1af5d2fSBarry Smith       x_l = j;
1609f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1610f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1611f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1612f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1613b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j * m + i]), minv, maxv);
16149566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1615f1af5d2fSBarry Smith       }
1616f1af5d2fSBarry Smith     }
1617d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1618f1af5d2fSBarry Smith   }
16199566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &v));
16203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1621f1af5d2fSBarry Smith }
1622f1af5d2fSBarry Smith 
1623d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw(Mat A, PetscViewer viewer)
1624d71ae5a4SJacob Faibussowitsch {
1625b0a32e0cSBarry Smith   PetscDraw draw;
1626ace3abfcSBarry Smith   PetscBool isnull;
1627329f5518SBarry Smith   PetscReal xr, yr, xl, yl, h, w;
1628f1af5d2fSBarry Smith 
1629f1af5d2fSBarry Smith   PetscFunctionBegin;
16309566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
16319566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
16323ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1633f1af5d2fSBarry Smith 
16349371c9d4SSatish Balay   xr = A->cmap->n;
16359371c9d4SSatish Balay   yr = A->rmap->n;
16369371c9d4SSatish Balay   h  = yr / 10.0;
16379371c9d4SSatish Balay   w  = xr / 10.0;
16389371c9d4SSatish Balay   xr += w;
16399371c9d4SSatish Balay   yr += h;
16409371c9d4SSatish Balay   xl = -w;
16419371c9d4SSatish Balay   yl = -h;
16429566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
16439566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
16449566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqDense_Draw_Zoom, A));
16459566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
16469566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
16473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1648f1af5d2fSBarry Smith }
1649f1af5d2fSBarry Smith 
1650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqDense(Mat A, PetscViewer viewer)
1651d71ae5a4SJacob Faibussowitsch {
1652ace3abfcSBarry Smith   PetscBool iascii, isbinary, isdraw;
1653932b0c3eSLois Curfman McInnes 
16543a40ed3dSBarry Smith   PetscFunctionBegin;
16559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
16569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
16579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
16581baa6e33SBarry Smith   if (iascii) PetscCall(MatView_SeqDense_ASCII(A, viewer));
16591baa6e33SBarry Smith   else if (isbinary) PetscCall(MatView_Dense_Binary(A, viewer));
16601baa6e33SBarry Smith   else if (isdraw) PetscCall(MatView_SeqDense_Draw(A, viewer));
16613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1662932b0c3eSLois Curfman McInnes }
1663289bc588SBarry Smith 
1664d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A, const PetscScalar *array)
1665d71ae5a4SJacob Faibussowitsch {
1666d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
1667d3042a70SBarry Smith 
1668d3042a70SBarry Smith   PetscFunctionBegin;
166928b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
167028b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
16716635c364SPierre Jolivet   PetscCheck(!a->unplacedarray, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseResetArray() first");
1672d3042a70SBarry Smith   a->unplacedarray       = a->v;
1673d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1674d3042a70SBarry Smith   a->v                   = (PetscScalar *)array;
1675637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
167647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1677c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1678ca15aa20SStefano Zampini #endif
16793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1680d3042a70SBarry Smith }
1681d3042a70SBarry Smith 
1682d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1683d71ae5a4SJacob Faibussowitsch {
1684d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
1685d3042a70SBarry Smith 
1686d3042a70SBarry Smith   PetscFunctionBegin;
168728b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
168828b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
1689d3042a70SBarry Smith   a->v             = a->unplacedarray;
1690d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1691d3042a70SBarry Smith   a->unplacedarray = NULL;
169247d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1693c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1694ca15aa20SStefano Zampini #endif
16953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1696d3042a70SBarry Smith }
1697d3042a70SBarry Smith 
1698d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A, const PetscScalar *array)
1699d71ae5a4SJacob Faibussowitsch {
1700d5ea218eSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
1701d5ea218eSStefano Zampini 
1702d5ea218eSStefano Zampini   PetscFunctionBegin;
170328b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
170428b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
17059566063dSJacob Faibussowitsch   if (!a->user_alloc) PetscCall(PetscFree(a->v));
1706d5ea218eSStefano Zampini   a->v          = (PetscScalar *)array;
1707d5ea218eSStefano Zampini   a->user_alloc = PETSC_FALSE;
170847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
1709d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1710d5ea218eSStefano Zampini #endif
17113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1712d5ea218eSStefano Zampini }
1713d5ea218eSStefano Zampini 
1714d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqDense(Mat mat)
1715d71ae5a4SJacob Faibussowitsch {
1716ec8511deSBarry Smith   Mat_SeqDense *l = (Mat_SeqDense *)mat->data;
171790f02eecSBarry Smith 
17183a40ed3dSBarry Smith   PetscFunctionBegin;
17193ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows %" PetscInt_FMT " Cols %" PetscInt_FMT, mat->rmap->n, mat->cmap->n));
1720f4f49eeaSPierre Jolivet   PetscCall(VecDestroy(&l->qrrhs));
17219566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->tau));
17229566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->pivots));
17239566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->fwork));
17249566063dSJacob Faibussowitsch   if (!l->user_alloc) PetscCall(PetscFree(l->v));
17259566063dSJacob Faibussowitsch   if (!l->unplaced_user_alloc) PetscCall(PetscFree(l->unplacedarray));
172628b400f6SJacob Faibussowitsch   PetscCheck(!l->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
172728b400f6SJacob Faibussowitsch   PetscCheck(!l->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
17289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&l->cvec));
17299566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&l->cmat));
17309566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1731dbd8c25aSHong Zhang 
17329566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
17339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactor_C", NULL));
17342e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorSymbolic_C", NULL));
17352e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorNumeric_C", NULL));
17369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL));
17379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL));
17389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL));
17399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL));
17409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL));
17419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL));
17429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL));
17439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL));
17449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL));
17459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL));
17469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL));
17479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqaij_C", NULL));
17488baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_elemental_C", NULL));
17508baccfbdSHong Zhang #endif
1751d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
17529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_scalapack_C", NULL));
1753d24d4204SJose E. Roman #endif
17542bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
17559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensecuda_C", NULL));
17569566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", NULL));
17579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdense_C", NULL));
17582e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensecuda_C", NULL));
17592bf066beSStefano Zampini #endif
176047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP)
176147d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensehip_C", NULL));
176247d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", NULL));
176347d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdense_C", NULL));
176447d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensehip_C", NULL));
176547d993e7Ssuyashtn #endif
17669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSeqDenseSetPreallocation_C", NULL));
17679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqaij_seqdense_C", NULL));
17689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdense_C", NULL));
17699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqbaij_seqdense_C", NULL));
17709566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqsbaij_seqdense_C", NULL));
177152c5f739Sprj- 
17729566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL));
17739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL));
17749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL));
17759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL));
17769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL));
17779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL));
17789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL));
17799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL));
17809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL));
17819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL));
17820be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", NULL));
17830be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", NULL));
17840be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", NULL));
17853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1786289bc588SBarry Smith }
1787289bc588SBarry Smith 
1788d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqDense(Mat A, MatReuse reuse, Mat *matout)
1789d71ae5a4SJacob Faibussowitsch {
1790c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
17916536e3caSStefano Zampini   PetscInt      k, j, m = A->rmap->n, M = mat->lda, n = A->cmap->n;
179287828ca2SBarry Smith   PetscScalar  *v, tmp;
179348b35521SBarry Smith 
17943a40ed3dSBarry Smith   PetscFunctionBegin;
17957fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
17966536e3caSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
17976536e3caSStefano Zampini     if (m == n) { /* in place transpose */
17989566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(A, &v));
1799d3e5ee88SLois Curfman McInnes       for (j = 0; j < m; j++) {
1800289bc588SBarry Smith         for (k = 0; k < j; k++) {
18011b807ce4Svictorle           tmp          = v[j + k * M];
18021b807ce4Svictorle           v[j + k * M] = v[k + j * M];
18031b807ce4Svictorle           v[k + j * M] = tmp;
1804289bc588SBarry Smith         }
1805289bc588SBarry Smith       }
18069566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArray(A, &v));
18076536e3caSStefano Zampini     } else { /* reuse memory, temporary allocates new memory */
18086536e3caSStefano Zampini       PetscScalar *v2;
18096536e3caSStefano Zampini       PetscLayout  tmplayout;
18106536e3caSStefano Zampini 
18119566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1((size_t)m * n, &v2));
18129566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(A, &v));
18136536e3caSStefano Zampini       for (j = 0; j < n; j++) {
18146536e3caSStefano Zampini         for (k = 0; k < m; k++) v2[j + (size_t)k * n] = v[k + (size_t)j * M];
18156536e3caSStefano Zampini       }
18169566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, v2, (size_t)m * n));
18179566063dSJacob Faibussowitsch       PetscCall(PetscFree(v2));
18189566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArray(A, &v));
18196536e3caSStefano Zampini       /* cleanup size dependent quantities */
18209566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&mat->cvec));
18219566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&mat->cmat));
18229566063dSJacob Faibussowitsch       PetscCall(PetscFree(mat->pivots));
18239566063dSJacob Faibussowitsch       PetscCall(PetscFree(mat->fwork));
18246536e3caSStefano Zampini       /* swap row/col layouts */
18256497c311SBarry Smith       PetscCall(PetscBLASIntCast(n, &mat->lda));
18266536e3caSStefano Zampini       tmplayout = A->rmap;
18276536e3caSStefano Zampini       A->rmap   = A->cmap;
18286536e3caSStefano Zampini       A->cmap   = tmplayout;
18296536e3caSStefano Zampini     }
18303a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1831d3e5ee88SLois Curfman McInnes     Mat           tmat;
1832ec8511deSBarry Smith     Mat_SeqDense *tmatd;
183387828ca2SBarry Smith     PetscScalar  *v2;
1834af36a384SStefano Zampini     PetscInt      M2;
1835ea709b57SSatish Balay 
18366536e3caSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX) {
18379566063dSJacob Faibussowitsch       PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &tmat));
18389566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(tmat, A->cmap->n, A->rmap->n, A->cmap->n, A->rmap->n));
18399566063dSJacob Faibussowitsch       PetscCall(MatSetType(tmat, ((PetscObject)A)->type_name));
18409566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSetPreallocation(tmat, NULL));
1841ca15aa20SStefano Zampini     } else tmat = *matout;
1842ca15aa20SStefano Zampini 
18439566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&v));
18449566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(tmat, &v2));
1845ec8511deSBarry Smith     tmatd = (Mat_SeqDense *)tmat->data;
1846ca15aa20SStefano Zampini     M2    = tmatd->lda;
1847d3e5ee88SLois Curfman McInnes     for (j = 0; j < n; j++) {
1848af36a384SStefano Zampini       for (k = 0; k < m; k++) v2[j + k * M2] = v[k + j * M];
1849d3e5ee88SLois Curfman McInnes     }
18509566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(tmat, &v2));
18519566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&v));
18529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(tmat, MAT_FINAL_ASSEMBLY));
18539566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(tmat, MAT_FINAL_ASSEMBLY));
18546536e3caSStefano Zampini     *matout = tmat;
185548b35521SBarry Smith   }
18563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1857289bc588SBarry Smith }
1858289bc588SBarry Smith 
1859d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_SeqDense(Mat A1, Mat A2, PetscBool *flg)
1860d71ae5a4SJacob Faibussowitsch {
1861c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense *)A1->data;
1862c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense *)A2->data;
1863ca15aa20SStefano Zampini   PetscInt           i;
1864ca15aa20SStefano Zampini   const PetscScalar *v1, *v2;
18659ea5d5aeSSatish Balay 
18663a40ed3dSBarry Smith   PetscFunctionBegin;
18679371c9d4SSatish Balay   if (A1->rmap->n != A2->rmap->n) {
18689371c9d4SSatish Balay     *flg = PETSC_FALSE;
18693ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
18709371c9d4SSatish Balay   }
18719371c9d4SSatish Balay   if (A1->cmap->n != A2->cmap->n) {
18729371c9d4SSatish Balay     *flg = PETSC_FALSE;
18733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
18749371c9d4SSatish Balay   }
18759566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A1, &v1));
18769566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A2, &v2));
1877ca15aa20SStefano Zampini   for (i = 0; i < A1->cmap->n; i++) {
18789566063dSJacob Faibussowitsch     PetscCall(PetscArraycmp(v1, v2, A1->rmap->n, flg));
18793ba16761SJacob Faibussowitsch     if (*flg == PETSC_FALSE) PetscFunctionReturn(PETSC_SUCCESS);
1880ca15aa20SStefano Zampini     v1 += mat1->lda;
1881ca15aa20SStefano Zampini     v2 += mat2->lda;
18821b807ce4Svictorle   }
18839566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A1, &v1));
18849566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A2, &v2));
188577c4ece6SBarry Smith   *flg = PETSC_TRUE;
18863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1887289bc588SBarry Smith }
1888289bc588SBarry Smith 
188914277c92SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqDense(Mat A, Vec v)
1890d71ae5a4SJacob Faibussowitsch {
1891c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
189213f74950SBarry Smith   PetscInt           i, n, len;
1893ca15aa20SStefano Zampini   PetscScalar       *x;
1894ca15aa20SStefano Zampini   const PetscScalar *vv;
189544cd7ae7SLois Curfman McInnes 
18963a40ed3dSBarry Smith   PetscFunctionBegin;
18979566063dSJacob Faibussowitsch   PetscCall(VecGetSize(v, &n));
18989566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
1899d0f46423SBarry Smith   len = PetscMin(A->rmap->n, A->cmap->n);
19009566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &vv));
190108401ef6SPierre Jolivet   PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec");
1902ad540459SPierre Jolivet   for (i = 0; i < len; i++) x[i] = vv[i * mat->lda + i];
19039566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &vv));
19049566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
19053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1906289bc588SBarry Smith }
1907289bc588SBarry Smith 
1908d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_SeqDense(Mat A, Vec ll, Vec rr)
1909d71ae5a4SJacob Faibussowitsch {
1910c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense *)A->data;
1911f1ceaac6SMatthew G. Knepley   const PetscScalar *l, *r;
1912ca15aa20SStefano Zampini   PetscScalar        x, *v, *vv;
1913d0f46423SBarry Smith   PetscInt           i, j, m = A->rmap->n, n = A->cmap->n;
191455659b69SBarry Smith 
19153a40ed3dSBarry Smith   PetscFunctionBegin;
19169566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &vv));
191728988994SBarry Smith   if (ll) {
19189566063dSJacob Faibussowitsch     PetscCall(VecGetSize(ll, &m));
19199566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll, &l));
192008401ef6SPierre Jolivet     PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vec wrong size");
1921da3a660dSBarry Smith     for (i = 0; i < m; i++) {
1922da3a660dSBarry Smith       x = l[i];
1923ca15aa20SStefano Zampini       v = vv + i;
19249371c9d4SSatish Balay       for (j = 0; j < n; j++) {
19259371c9d4SSatish Balay         (*v) *= x;
19269371c9d4SSatish Balay         v += mat->lda;
19279371c9d4SSatish Balay       }
1928da3a660dSBarry Smith     }
19299566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll, &l));
19309566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0 * n * m));
1931da3a660dSBarry Smith   }
193228988994SBarry Smith   if (rr) {
19339566063dSJacob Faibussowitsch     PetscCall(VecGetSize(rr, &n));
19349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr, &r));
193508401ef6SPierre Jolivet     PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec wrong size");
1936da3a660dSBarry Smith     for (i = 0; i < n; i++) {
1937da3a660dSBarry Smith       x = r[i];
1938ca15aa20SStefano Zampini       v = vv + i * mat->lda;
19392205254eSKarl Rupp       for (j = 0; j < m; j++) (*v++) *= x;
1940da3a660dSBarry Smith     }
19419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr, &r));
19429566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0 * n * m));
1943da3a660dSBarry Smith   }
19449566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &vv));
19453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1946289bc588SBarry Smith }
1947289bc588SBarry Smith 
1948d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_SeqDense(Mat A, NormType type, PetscReal *nrm)
1949d71ae5a4SJacob Faibussowitsch {
1950c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
1951ca15aa20SStefano Zampini   PetscScalar  *v, *vv;
1952329f5518SBarry Smith   PetscReal     sum = 0.0;
195375f6d85dSStefano Zampini   PetscInt      lda, m = A->rmap->n, i, j;
195455659b69SBarry Smith 
19553a40ed3dSBarry Smith   PetscFunctionBegin;
19569566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&vv));
19579566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(A, &lda));
1958ca15aa20SStefano Zampini   v = vv;
1959289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1960a5ce6ee0Svictorle     if (lda > m) {
1961d0f46423SBarry Smith       for (j = 0; j < A->cmap->n; j++) {
1962ca15aa20SStefano Zampini         v = vv + j * lda;
1963a5ce6ee0Svictorle         for (i = 0; i < m; i++) {
19649371c9d4SSatish Balay           sum += PetscRealPart(PetscConj(*v) * (*v));
19659371c9d4SSatish Balay           v++;
1966a5ce6ee0Svictorle         }
1967a5ce6ee0Svictorle       }
1968a5ce6ee0Svictorle     } else {
1969570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1970570b7f6dSBarry Smith       PetscBLASInt one = 1, cnt = A->cmap->n * A->rmap->n;
1971792fecdfSBarry Smith       PetscCallBLAS("BLASnrm2", *nrm = BLASnrm2_(&cnt, v, &one));
1972570b7f6dSBarry Smith     }
1973570b7f6dSBarry Smith #else
1974d0f46423SBarry Smith       for (i = 0; i < A->cmap->n * A->rmap->n; i++) {
19759371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
19769371c9d4SSatish Balay         v++;
1977289bc588SBarry Smith       }
1978a5ce6ee0Svictorle     }
19798f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
1980570b7f6dSBarry Smith #endif
19819566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0 * A->cmap->n * A->rmap->n));
19823a40ed3dSBarry Smith   } else if (type == NORM_1) {
1983064f8208SBarry Smith     *nrm = 0.0;
1984d0f46423SBarry Smith     for (j = 0; j < A->cmap->n; j++) {
1985ca15aa20SStefano Zampini       v   = vv + j * mat->lda;
1986289bc588SBarry Smith       sum = 0.0;
1987d0f46423SBarry Smith       for (i = 0; i < A->rmap->n; i++) {
19889371c9d4SSatish Balay         sum += PetscAbsScalar(*v);
19899371c9d4SSatish Balay         v++;
1990289bc588SBarry Smith       }
1991064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1992289bc588SBarry Smith     }
19939566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n));
19943a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1995064f8208SBarry Smith     *nrm = 0.0;
1996d0f46423SBarry Smith     for (j = 0; j < A->rmap->n; j++) {
1997ca15aa20SStefano Zampini       v   = vv + j;
1998289bc588SBarry Smith       sum = 0.0;
1999d0f46423SBarry Smith       for (i = 0; i < A->cmap->n; i++) {
20009371c9d4SSatish Balay         sum += PetscAbsScalar(*v);
20019371c9d4SSatish Balay         v += mat->lda;
2002289bc588SBarry Smith       }
2003064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2004289bc588SBarry Smith     }
20059566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n));
2006e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No two norm");
20079566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&vv));
20083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2009289bc588SBarry Smith }
2010289bc588SBarry Smith 
2011d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqDense(Mat A, MatOption op, PetscBool flg)
2012d71ae5a4SJacob Faibussowitsch {
2013c0bbcb79SLois Curfman McInnes   Mat_SeqDense *aij = (Mat_SeqDense *)A->data;
201467e560aaSBarry Smith 
20153a40ed3dSBarry Smith   PetscFunctionBegin;
2016b5a2b587SKris Buschelman   switch (op) {
2017d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
2018d71ae5a4SJacob Faibussowitsch     aij->roworiented = flg;
2019d71ae5a4SJacob Faibussowitsch     break;
2020d71ae5a4SJacob Faibussowitsch   default:
2021*888c827cSStefano Zampini     break;
20223a40ed3dSBarry Smith   }
20233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2024289bc588SBarry Smith }
2025289bc588SBarry Smith 
2026d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqDense(Mat A)
2027d71ae5a4SJacob Faibussowitsch {
2028ec8511deSBarry Smith   Mat_SeqDense *l   = (Mat_SeqDense *)A->data;
20293d8925e7SStefano Zampini   PetscInt      lda = l->lda, m = A->rmap->n, n = A->cmap->n, j;
2030ca15aa20SStefano Zampini   PetscScalar  *v;
20313a40ed3dSBarry Smith 
20323a40ed3dSBarry Smith   PetscFunctionBegin;
20339566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(A, &v));
2034a5ce6ee0Svictorle   if (lda > m) {
203548a46eb9SPierre Jolivet     for (j = 0; j < n; j++) PetscCall(PetscArrayzero(v + j * lda, m));
2036a5ce6ee0Svictorle   } else {
20379566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(v, PetscInt64Mult(m, n)));
2038a5ce6ee0Svictorle   }
20399566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(A, &v));
20403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20416f0a148fSBarry Smith }
20426f0a148fSBarry Smith 
2043d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroRows_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
2044d71ae5a4SJacob Faibussowitsch {
2045ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense *)A->data;
2046b9679d65SBarry Smith   PetscInt           m = l->lda, n = A->cmap->n, i, j;
2047ca15aa20SStefano Zampini   PetscScalar       *slot, *bb, *v;
204897b48c8fSBarry Smith   const PetscScalar *xx;
204955659b69SBarry Smith 
20503a40ed3dSBarry Smith   PetscFunctionBegin;
205176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
2052b9679d65SBarry Smith     for (i = 0; i < N; i++) {
205308401ef6SPierre Jolivet       PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed");
205408401ef6SPierre Jolivet       PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n);
2055b9679d65SBarry Smith     }
205676bd3646SJed Brown   }
20573ba16761SJacob Faibussowitsch   if (!N) PetscFunctionReturn(PETSC_SUCCESS);
2058b9679d65SBarry Smith 
2059dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
206097b48c8fSBarry Smith   if (x && b) {
20619566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
20629566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
20632205254eSKarl Rupp     for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]];
20649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
20659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
206697b48c8fSBarry Smith   }
206797b48c8fSBarry Smith 
20689566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &v));
20696f0a148fSBarry Smith   for (i = 0; i < N; i++) {
2070ca15aa20SStefano Zampini     slot = v + rows[i];
20719371c9d4SSatish Balay     for (j = 0; j < n; j++) {
20729371c9d4SSatish Balay       *slot = 0.0;
20739371c9d4SSatish Balay       slot += m;
20749371c9d4SSatish Balay     }
20756f0a148fSBarry Smith   }
2076f4df32b1SMatthew Knepley   if (diag != 0.0) {
207708401ef6SPierre Jolivet     PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices");
20786f0a148fSBarry Smith     for (i = 0; i < N; i++) {
2079ca15aa20SStefano Zampini       slot  = v + (m + 1) * rows[i];
2080f4df32b1SMatthew Knepley       *slot = diag;
20816f0a148fSBarry Smith     }
20826f0a148fSBarry Smith   }
20839566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &v));
20843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20856f0a148fSBarry Smith }
2086557bce09SLois Curfman McInnes 
2087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A, PetscInt *lda)
2088d71ae5a4SJacob Faibussowitsch {
208949a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
209049a6ff4bSBarry Smith 
209149a6ff4bSBarry Smith   PetscFunctionBegin;
209249a6ff4bSBarry Smith   *lda = mat->lda;
20933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
209449a6ff4bSBarry Smith }
209549a6ff4bSBarry Smith 
2096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArray_SeqDense(Mat A, PetscScalar **array)
2097d71ae5a4SJacob Faibussowitsch {
2098c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
20993a40ed3dSBarry Smith 
21003a40ed3dSBarry Smith   PetscFunctionBegin;
210128b400f6SJacob Faibussowitsch   PetscCheck(!mat->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
210264e87e97SBarry Smith   *array = mat->v;
21033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
210464e87e97SBarry Smith }
21050754003eSLois Curfman McInnes 
2106d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A, PetscScalar **array)
2107d71ae5a4SJacob Faibussowitsch {
21083a40ed3dSBarry Smith   PetscFunctionBegin;
210975f6d85dSStefano Zampini   if (array) *array = NULL;
21103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2111ff14e315SSatish Balay }
21120754003eSLois Curfman McInnes 
21130f74d2c1SSatish Balay /*@
211411a5261eSBarry Smith   MatDenseGetLDA - gets the leading dimension of the array returned from `MatDenseGetArray()`
211549a6ff4bSBarry Smith 
21162ef1f0ffSBarry Smith   Not Collective
211749a6ff4bSBarry Smith 
211849a6ff4bSBarry Smith   Input Parameter:
2119fe59aa6dSJacob Faibussowitsch . A - a `MATDENSE` or `MATDENSECUDA` matrix
212049a6ff4bSBarry Smith 
212149a6ff4bSBarry Smith   Output Parameter:
212249a6ff4bSBarry Smith . lda - the leading dimension
212349a6ff4bSBarry Smith 
212449a6ff4bSBarry Smith   Level: intermediate
212549a6ff4bSBarry Smith 
21261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseSetLDA()`
212749a6ff4bSBarry Smith @*/
2128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLDA(Mat A, PetscInt *lda)
2129d71ae5a4SJacob Faibussowitsch {
213049a6ff4bSBarry Smith   PetscFunctionBegin;
2131d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
21324f572ea9SToby Isaac   PetscAssertPointer(lda, 2);
213375f6d85dSStefano Zampini   MatCheckPreallocated(A, 1);
2134cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetLDA_C", (Mat, PetscInt *), (A, lda));
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213649a6ff4bSBarry Smith }
213749a6ff4bSBarry Smith 
21380f74d2c1SSatish Balay /*@
213911a5261eSBarry Smith   MatDenseSetLDA - Sets the leading dimension of the array used by the `MATDENSE` matrix
2140ad16ce7aSStefano Zampini 
21412323109cSBarry Smith   Collective if the matrix layouts have not yet been setup
2142ad16ce7aSStefano Zampini 
2143d8d19677SJose E. Roman   Input Parameters:
2144fe59aa6dSJacob Faibussowitsch + A   - a `MATDENSE` or `MATDENSECUDA` matrix
2145ad16ce7aSStefano Zampini - lda - the leading dimension
2146ad16ce7aSStefano Zampini 
2147ad16ce7aSStefano Zampini   Level: intermediate
2148ad16ce7aSStefano Zampini 
21491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetLDA()`
2150ad16ce7aSStefano Zampini @*/
2151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA(Mat A, PetscInt lda)
2152d71ae5a4SJacob Faibussowitsch {
2153ad16ce7aSStefano Zampini   PetscFunctionBegin;
2154ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
2155cac4c232SBarry Smith   PetscTryMethod(A, "MatDenseSetLDA_C", (Mat, PetscInt), (A, lda));
21563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2157ad16ce7aSStefano Zampini }
2158ad16ce7aSStefano Zampini 
2159ad16ce7aSStefano Zampini /*@C
216011a5261eSBarry Smith   MatDenseGetArray - gives read-write access to the array where the data for a `MATDENSE` matrix is stored
216173a71a0fSBarry Smith 
2162c3339decSBarry Smith   Logically Collective
216373a71a0fSBarry Smith 
216473a71a0fSBarry Smith   Input Parameter:
2165fe59aa6dSJacob Faibussowitsch . A - a dense matrix
216673a71a0fSBarry Smith 
216773a71a0fSBarry Smith   Output Parameter:
216873a71a0fSBarry Smith . array - pointer to the data
216973a71a0fSBarry Smith 
217073a71a0fSBarry Smith   Level: intermediate
217173a71a0fSBarry Smith 
2172fe59aa6dSJacob Faibussowitsch   Fortran Notes:
21730ab4885dSBarry Smith   `MatDenseGetArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseGetArrayF90()`
21740ab4885dSBarry Smith 
21751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
217673a71a0fSBarry Smith @*/
21775d83a8b1SBarry Smith PetscErrorCode MatDenseGetArray(Mat A, PetscScalar *array[])
2178d71ae5a4SJacob Faibussowitsch {
217973a71a0fSBarry Smith   PetscFunctionBegin;
2180d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
21814f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2182cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array));
21833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
218473a71a0fSBarry Smith }
218573a71a0fSBarry Smith 
2186dec5eb66SMatthew G Knepley /*@C
218711a5261eSBarry Smith   MatDenseRestoreArray - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArray()`
218873a71a0fSBarry Smith 
2189c3339decSBarry Smith   Logically Collective
21908572280aSBarry Smith 
21918572280aSBarry Smith   Input Parameters:
2192fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
21932ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`)
21948572280aSBarry Smith 
21958572280aSBarry Smith   Level: intermediate
21968572280aSBarry Smith 
2197fe59aa6dSJacob Faibussowitsch   Fortran Notes:
21980ab4885dSBarry Smith   `MatDenseRestoreArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseRestoreArrayF90()`
21990ab4885dSBarry Smith 
22001cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
22018572280aSBarry Smith @*/
22025d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArray(Mat A, PetscScalar *array[])
2203d71ae5a4SJacob Faibussowitsch {
22048572280aSBarry Smith   PetscFunctionBegin;
2205d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
22064f572ea9SToby Isaac   if (array) PetscAssertPointer(array, 2);
2207cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array));
22089566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)A));
220947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
2210637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
2211637a0070SStefano Zampini #endif
22123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22138572280aSBarry Smith }
22148572280aSBarry Smith 
22158572280aSBarry Smith /*@C
221611a5261eSBarry Smith   MatDenseGetArrayRead - gives read-only access to the array where the data for a `MATDENSE` matrix is stored
22178572280aSBarry Smith 
2218fb850c59SBarry Smith   Not Collective
22198572280aSBarry Smith 
22208572280aSBarry Smith   Input Parameter:
2221fe59aa6dSJacob Faibussowitsch . A - a dense matrix
22228572280aSBarry Smith 
22238572280aSBarry Smith   Output Parameter:
22248572280aSBarry Smith . array - pointer to the data
22258572280aSBarry Smith 
22268572280aSBarry Smith   Level: intermediate
22278572280aSBarry Smith 
22281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
22298572280aSBarry Smith @*/
22305d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayRead(Mat A, const PetscScalar *array[])
2231d71ae5a4SJacob Faibussowitsch {
22328572280aSBarry Smith   PetscFunctionBegin;
2233d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
22344f572ea9SToby Isaac   PetscAssertPointer(array, 2);
22355c0db29aSPierre Jolivet   PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array));
22363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22378572280aSBarry Smith }
22388572280aSBarry Smith 
22398572280aSBarry Smith /*@C
224011a5261eSBarry Smith   MatDenseRestoreArrayRead - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayRead()`
22418572280aSBarry Smith 
2242fb850c59SBarry Smith   Not Collective
224373a71a0fSBarry Smith 
224473a71a0fSBarry Smith   Input Parameters:
2245fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
22462ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`)
224773a71a0fSBarry Smith 
224873a71a0fSBarry Smith   Level: intermediate
224973a71a0fSBarry Smith 
22501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
225173a71a0fSBarry Smith @*/
22525d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayRead(Mat A, const PetscScalar *array[])
2253d71ae5a4SJacob Faibussowitsch {
225473a71a0fSBarry Smith   PetscFunctionBegin;
2255d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
22564f572ea9SToby Isaac   if (array) PetscAssertPointer(array, 2);
22575c0db29aSPierre Jolivet   PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array));
22583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
225973a71a0fSBarry Smith }
226073a71a0fSBarry Smith 
22616947451fSStefano Zampini /*@C
226211a5261eSBarry Smith   MatDenseGetArrayWrite - gives write-only access to the array where the data for a `MATDENSE` matrix is stored
22636947451fSStefano Zampini 
2264fb850c59SBarry Smith   Not Collective
22656947451fSStefano Zampini 
22666947451fSStefano Zampini   Input Parameter:
2267fe59aa6dSJacob Faibussowitsch . A - a dense matrix
22686947451fSStefano Zampini 
22696947451fSStefano Zampini   Output Parameter:
22706947451fSStefano Zampini . array - pointer to the data
22716947451fSStefano Zampini 
22726947451fSStefano Zampini   Level: intermediate
22736947451fSStefano Zampini 
22741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`
22756947451fSStefano Zampini @*/
22765d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayWrite(Mat A, PetscScalar *array[])
2277d71ae5a4SJacob Faibussowitsch {
22786947451fSStefano Zampini   PetscFunctionBegin;
2279d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
22804f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2281cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array));
22823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22836947451fSStefano Zampini }
22846947451fSStefano Zampini 
22856947451fSStefano Zampini /*@C
228611a5261eSBarry Smith   MatDenseRestoreArrayWrite - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayWrite()`
22876947451fSStefano Zampini 
2288fb850c59SBarry Smith   Not Collective
22896947451fSStefano Zampini 
22906947451fSStefano Zampini   Input Parameters:
2291fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
22922ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`)
22936947451fSStefano Zampini 
22946947451fSStefano Zampini   Level: intermediate
22956947451fSStefano Zampini 
22961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`
22976947451fSStefano Zampini @*/
22985d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayWrite(Mat A, PetscScalar *array[])
2299d71ae5a4SJacob Faibussowitsch {
23006947451fSStefano Zampini   PetscFunctionBegin;
2301d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
23024f572ea9SToby Isaac   if (array) PetscAssertPointer(array, 2);
2303cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array));
23049566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)A));
230547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
23066947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
23076947451fSStefano Zampini #endif
23083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23096947451fSStefano Zampini }
23106947451fSStefano Zampini 
2311cd3f9d89SJunchao Zhang /*@C
2312cd3f9d89SJunchao Zhang   MatDenseGetArrayAndMemType - gives read-write access to the array where the data for a `MATDENSE` matrix is stored
2313cd3f9d89SJunchao Zhang 
2314cd3f9d89SJunchao Zhang   Logically Collective
2315cd3f9d89SJunchao Zhang 
2316cd3f9d89SJunchao Zhang   Input Parameter:
2317fe59aa6dSJacob Faibussowitsch . A - a dense matrix
2318cd3f9d89SJunchao Zhang 
2319cd3f9d89SJunchao Zhang   Output Parameters:
2320cd3f9d89SJunchao Zhang + array - pointer to the data
2321cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer
2322cd3f9d89SJunchao Zhang 
2323cd3f9d89SJunchao Zhang   Level: intermediate
2324cd3f9d89SJunchao Zhang 
2325fb850c59SBarry Smith   Note:
23262ef1f0ffSBarry Smith   If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc.,
23272ef1f0ffSBarry Smith   an array on device is always returned and is guaranteed to contain the matrix's latest data.
23282ef1f0ffSBarry Smith 
23291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArrayRead()`,
2330cd3f9d89SJunchao Zhang    `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()`
2331cd3f9d89SJunchao Zhang @*/
23325d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayAndMemType(Mat A, PetscScalar *array[], PetscMemType *mtype)
2333cd3f9d89SJunchao Zhang {
2334cd3f9d89SJunchao Zhang   PetscBool isMPI;
2335cd3f9d89SJunchao Zhang 
2336cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2337cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
23384f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2339e865de01SJunchao Zhang   PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */
2340cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2341cd3f9d89SJunchao Zhang   if (isMPI) {
2342cd3f9d89SJunchao Zhang     /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */
2343cd3f9d89SJunchao Zhang     PetscCall(MatDenseGetArrayAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype));
2344cd3f9d89SJunchao Zhang   } else {
2345cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *);
23463ba16761SJacob Faibussowitsch 
23473ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayAndMemType_C", &fptr));
2348cd3f9d89SJunchao Zhang     if (fptr) {
2349cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array, mtype));
2350cd3f9d89SJunchao Zhang     } else {
2351cd3f9d89SJunchao Zhang       PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array));
2352cd3f9d89SJunchao Zhang       if (mtype) *mtype = PETSC_MEMTYPE_HOST;
2353cd3f9d89SJunchao Zhang     }
2354cd3f9d89SJunchao Zhang   }
23553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2356cd3f9d89SJunchao Zhang }
2357cd3f9d89SJunchao Zhang 
2358cd3f9d89SJunchao Zhang /*@C
2359cd3f9d89SJunchao Zhang   MatDenseRestoreArrayAndMemType - returns access to the array that is obtained by `MatDenseGetArrayAndMemType()`
2360cd3f9d89SJunchao Zhang 
2361cd3f9d89SJunchao Zhang   Logically Collective
2362cd3f9d89SJunchao Zhang 
2363cd3f9d89SJunchao Zhang   Input Parameters:
2364fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
2365cd3f9d89SJunchao Zhang - array - pointer to the data
2366cd3f9d89SJunchao Zhang 
2367cd3f9d89SJunchao Zhang   Level: intermediate
2368cd3f9d89SJunchao Zhang 
23691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
2370cd3f9d89SJunchao Zhang @*/
23715d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayAndMemType(Mat A, PetscScalar *array[])
2372cd3f9d89SJunchao Zhang {
2373cd3f9d89SJunchao Zhang   PetscBool isMPI;
2374cd3f9d89SJunchao Zhang 
2375cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2376cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
23774f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2378cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2379cd3f9d89SJunchao Zhang   if (isMPI) {
2380cd3f9d89SJunchao Zhang     PetscCall(MatDenseRestoreArrayAndMemType(((Mat_MPIDense *)A->data)->A, array));
2381cd3f9d89SJunchao Zhang   } else {
2382cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, PetscScalar **);
23833ba16761SJacob Faibussowitsch 
23843ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayAndMemType_C", &fptr));
2385cd3f9d89SJunchao Zhang     if (fptr) {
2386cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array));
2387cd3f9d89SJunchao Zhang     } else {
2388cd3f9d89SJunchao Zhang       PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array));
2389cd3f9d89SJunchao Zhang     }
2390cd3f9d89SJunchao Zhang     *array = NULL;
2391cd3f9d89SJunchao Zhang   }
2392cd3f9d89SJunchao Zhang   PetscCall(PetscObjectStateIncrease((PetscObject)A));
23933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2394cd3f9d89SJunchao Zhang }
2395cd3f9d89SJunchao Zhang 
2396cd3f9d89SJunchao Zhang /*@C
2397cd3f9d89SJunchao Zhang   MatDenseGetArrayReadAndMemType - gives read-only access to the array where the data for a `MATDENSE` matrix is stored
2398cd3f9d89SJunchao Zhang 
2399cd3f9d89SJunchao Zhang   Logically Collective
2400cd3f9d89SJunchao Zhang 
2401cd3f9d89SJunchao Zhang   Input Parameter:
2402fe59aa6dSJacob Faibussowitsch . A - a dense matrix
2403cd3f9d89SJunchao Zhang 
2404cd3f9d89SJunchao Zhang   Output Parameters:
2405cd3f9d89SJunchao Zhang + array - pointer to the data
2406cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer
2407cd3f9d89SJunchao Zhang 
2408cd3f9d89SJunchao Zhang   Level: intermediate
2409cd3f9d89SJunchao Zhang 
2410fb850c59SBarry Smith   Note:
24112ef1f0ffSBarry Smith   If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc.,
24122ef1f0ffSBarry Smith   an array on device is always returned and is guaranteed to contain the matrix's latest data.
24132ef1f0ffSBarry Smith 
24141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`,
2415cd3f9d89SJunchao Zhang    `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()`
2416cd3f9d89SJunchao Zhang @*/
24175d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayReadAndMemType(Mat A, const PetscScalar *array[], PetscMemType *mtype)
2418cd3f9d89SJunchao Zhang {
2419cd3f9d89SJunchao Zhang   PetscBool isMPI;
2420cd3f9d89SJunchao Zhang 
2421cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2422cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
24234f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2424e865de01SJunchao Zhang   PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */
2425cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2426cd3f9d89SJunchao Zhang   if (isMPI) { /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */
2427cd3f9d89SJunchao Zhang     PetscCall(MatDenseGetArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype));
2428cd3f9d89SJunchao Zhang   } else {
2429cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, const PetscScalar **, PetscMemType *);
24303ba16761SJacob Faibussowitsch 
24313ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayReadAndMemType_C", &fptr));
2432cd3f9d89SJunchao Zhang     if (fptr) {
2433cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array, mtype));
2434cd3f9d89SJunchao Zhang     } else {
24355c0db29aSPierre Jolivet       PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array));
2436cd3f9d89SJunchao Zhang       if (mtype) *mtype = PETSC_MEMTYPE_HOST;
2437cd3f9d89SJunchao Zhang     }
2438cd3f9d89SJunchao Zhang   }
24393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2440cd3f9d89SJunchao Zhang }
2441cd3f9d89SJunchao Zhang 
2442cd3f9d89SJunchao Zhang /*@C
2443cd3f9d89SJunchao Zhang   MatDenseRestoreArrayReadAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()`
2444cd3f9d89SJunchao Zhang 
2445cd3f9d89SJunchao Zhang   Logically Collective
2446cd3f9d89SJunchao Zhang 
2447cd3f9d89SJunchao Zhang   Input Parameters:
2448fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
2449cd3f9d89SJunchao Zhang - array - pointer to the data
2450cd3f9d89SJunchao Zhang 
2451cd3f9d89SJunchao Zhang   Level: intermediate
2452cd3f9d89SJunchao Zhang 
24531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
2454cd3f9d89SJunchao Zhang @*/
24555d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat A, const PetscScalar *array[])
2456cd3f9d89SJunchao Zhang {
2457cd3f9d89SJunchao Zhang   PetscBool isMPI;
2458cd3f9d89SJunchao Zhang 
2459cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2460cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
24614f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2462cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2463cd3f9d89SJunchao Zhang   if (isMPI) {
2464cd3f9d89SJunchao Zhang     PetscCall(MatDenseRestoreArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array));
2465cd3f9d89SJunchao Zhang   } else {
2466cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, const PetscScalar **);
24673ba16761SJacob Faibussowitsch 
24683ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayReadAndMemType_C", &fptr));
2469cd3f9d89SJunchao Zhang     if (fptr) {
2470cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array));
2471cd3f9d89SJunchao Zhang     } else {
24725c0db29aSPierre Jolivet       PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array));
2473cd3f9d89SJunchao Zhang     }
2474cd3f9d89SJunchao Zhang     *array = NULL;
2475cd3f9d89SJunchao Zhang   }
24763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2477cd3f9d89SJunchao Zhang }
2478cd3f9d89SJunchao Zhang 
2479cd3f9d89SJunchao Zhang /*@C
2480cd3f9d89SJunchao Zhang   MatDenseGetArrayWriteAndMemType - gives write-only access to the array where the data for a `MATDENSE` matrix is stored
2481cd3f9d89SJunchao Zhang 
2482cd3f9d89SJunchao Zhang   Logically Collective
2483cd3f9d89SJunchao Zhang 
2484cd3f9d89SJunchao Zhang   Input Parameter:
2485fe59aa6dSJacob Faibussowitsch . A - a dense matrix
2486cd3f9d89SJunchao Zhang 
2487cd3f9d89SJunchao Zhang   Output Parameters:
2488cd3f9d89SJunchao Zhang + array - pointer to the data
2489cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer
2490cd3f9d89SJunchao Zhang 
2491cd3f9d89SJunchao Zhang   Level: intermediate
2492cd3f9d89SJunchao Zhang 
2493fb850c59SBarry Smith   Note:
24942ef1f0ffSBarry Smith   If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc.,
24952ef1f0ffSBarry Smith   an array on device is always returned and is guaranteed to contain the matrix's latest data.
24962ef1f0ffSBarry Smith 
24971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWriteAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayRead()`,
2498cd3f9d89SJunchao Zhang   `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()`
2499cd3f9d89SJunchao Zhang @*/
25005d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat A, PetscScalar *array[], PetscMemType *mtype)
2501cd3f9d89SJunchao Zhang {
2502cd3f9d89SJunchao Zhang   PetscBool isMPI;
2503cd3f9d89SJunchao Zhang 
2504cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2505cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
25064f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2507e865de01SJunchao Zhang   PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */
2508cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2509cd3f9d89SJunchao Zhang   if (isMPI) {
2510cd3f9d89SJunchao Zhang     PetscCall(MatDenseGetArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype));
2511cd3f9d89SJunchao Zhang   } else {
2512cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *);
25133ba16761SJacob Faibussowitsch 
25143ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayWriteAndMemType_C", &fptr));
2515cd3f9d89SJunchao Zhang     if (fptr) {
2516cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array, mtype));
2517cd3f9d89SJunchao Zhang     } else {
2518cd3f9d89SJunchao Zhang       PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array));
2519cd3f9d89SJunchao Zhang       if (mtype) *mtype = PETSC_MEMTYPE_HOST;
2520cd3f9d89SJunchao Zhang     }
2521cd3f9d89SJunchao Zhang   }
25223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2523cd3f9d89SJunchao Zhang }
2524cd3f9d89SJunchao Zhang 
2525cd3f9d89SJunchao Zhang /*@C
2526cd3f9d89SJunchao Zhang   MatDenseRestoreArrayWriteAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()`
2527cd3f9d89SJunchao Zhang 
2528cd3f9d89SJunchao Zhang   Logically Collective
2529cd3f9d89SJunchao Zhang 
2530cd3f9d89SJunchao Zhang   Input Parameters:
2531fe59aa6dSJacob Faibussowitsch + A     - a dense matrix
2532cd3f9d89SJunchao Zhang - array - pointer to the data
2533cd3f9d89SJunchao Zhang 
2534cd3f9d89SJunchao Zhang   Level: intermediate
2535cd3f9d89SJunchao Zhang 
25361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`
2537cd3f9d89SJunchao Zhang @*/
25385d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat A, PetscScalar *array[])
2539cd3f9d89SJunchao Zhang {
2540cd3f9d89SJunchao Zhang   PetscBool isMPI;
2541cd3f9d89SJunchao Zhang 
2542cd3f9d89SJunchao Zhang   PetscFunctionBegin;
2543cd3f9d89SJunchao Zhang   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
25444f572ea9SToby Isaac   PetscAssertPointer(array, 2);
2545cd3f9d89SJunchao Zhang   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI));
2546cd3f9d89SJunchao Zhang   if (isMPI) {
2547cd3f9d89SJunchao Zhang     PetscCall(MatDenseRestoreArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array));
2548cd3f9d89SJunchao Zhang   } else {
2549cd3f9d89SJunchao Zhang     PetscErrorCode (*fptr)(Mat, PetscScalar **);
25503ba16761SJacob Faibussowitsch 
25513ba16761SJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayWriteAndMemType_C", &fptr));
2552cd3f9d89SJunchao Zhang     if (fptr) {
2553cd3f9d89SJunchao Zhang       PetscCall((*fptr)(A, array));
2554cd3f9d89SJunchao Zhang     } else {
2555cd3f9d89SJunchao Zhang       PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array));
2556cd3f9d89SJunchao Zhang     }
2557cd3f9d89SJunchao Zhang     *array = NULL;
2558cd3f9d89SJunchao Zhang   }
2559cd3f9d89SJunchao Zhang   PetscCall(PetscObjectStateIncrease((PetscObject)A));
25603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2561cd3f9d89SJunchao Zhang }
2562cd3f9d89SJunchao Zhang 
2563d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B)
2564d71ae5a4SJacob Faibussowitsch {
2565c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense *)A->data;
2566bf5a80bcSToby Isaac   PetscInt        i, j, nrows, ncols, ldb;
25675d0c19d7SBarry Smith   const PetscInt *irow, *icol;
256887828ca2SBarry Smith   PetscScalar    *av, *bv, *v = mat->v;
25690754003eSLois Curfman McInnes   Mat             newmat;
25700754003eSLois Curfman McInnes 
25713a40ed3dSBarry Smith   PetscFunctionBegin;
25729566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &irow));
25739566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &icol));
25749566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &nrows));
25759566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
25760754003eSLois Curfman McInnes 
2577182d2002SSatish Balay   /* Check submatrixcall */
2578182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
257913f74950SBarry Smith     PetscInt n_cols, n_rows;
25809566063dSJacob Faibussowitsch     PetscCall(MatGetSize(*B, &n_rows, &n_cols));
258121a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2582f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
25839566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(*B, nrows, ncols, nrows, ncols));
258421a2c019SBarry Smith     }
2585182d2002SSatish Balay     newmat = *B;
2586182d2002SSatish Balay   } else {
25870754003eSLois Curfman McInnes     /* Create and fill new matrix */
25889566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat));
25899566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(newmat, nrows, ncols, nrows, ncols));
25909566063dSJacob Faibussowitsch     PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name));
25919566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(newmat, NULL));
2592182d2002SSatish Balay   }
2593182d2002SSatish Balay 
2594182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
25959566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(newmat, &bv));
25969566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(newmat, &ldb));
2597182d2002SSatish Balay   for (i = 0; i < ncols; i++) {
25986de62eeeSBarry Smith     av = v + mat->lda * icol[i];
2599ca15aa20SStefano Zampini     for (j = 0; j < nrows; j++) bv[j] = av[irow[j]];
2600bf5a80bcSToby Isaac     bv += ldb;
26010754003eSLois Curfman McInnes   }
26029566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(newmat, &bv));
2603182d2002SSatish Balay 
2604182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
26059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY));
26069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY));
26070754003eSLois Curfman McInnes 
26080754003eSLois Curfman McInnes   /* Free work space */
26099566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &irow));
26109566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &icol));
2611182d2002SSatish Balay   *B = newmat;
26123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26130754003eSLois Curfman McInnes }
26140754003eSLois Curfman McInnes 
2615d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
2616d71ae5a4SJacob Faibussowitsch {
261713f74950SBarry Smith   PetscInt i;
2618905e6a2fSBarry Smith 
26193a40ed3dSBarry Smith   PetscFunctionBegin;
262048a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(PetscCalloc1(n, B));
2621905e6a2fSBarry Smith 
262248a46eb9SPierre Jolivet   for (i = 0; i < n; i++) PetscCall(MatCreateSubMatrix_SeqDense(A, irow[i], icol[i], scall, &(*B)[i]));
26233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2624905e6a2fSBarry Smith }
2625905e6a2fSBarry Smith 
2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqDense(Mat A, Mat B, MatStructure str)
2627d71ae5a4SJacob Faibussowitsch {
26284b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data;
2629ca15aa20SStefano Zampini   const PetscScalar *va;
2630ca15aa20SStefano Zampini   PetscScalar       *vb;
2631d0f46423SBarry Smith   PetscInt           lda1 = a->lda, lda2 = b->lda, m = A->rmap->n, n = A->cmap->n, j;
26323a40ed3dSBarry Smith 
26333a40ed3dSBarry Smith   PetscFunctionBegin;
263433f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
263533f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
26369566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
26373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
26383a40ed3dSBarry Smith   }
2639aed4548fSBarry Smith   PetscCheck(m == B->rmap->n && n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "size(B) != size(A)");
26409566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &va));
26419566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(B, &vb));
2642a5ce6ee0Svictorle   if (lda1 > m || lda2 > m) {
264348a46eb9SPierre Jolivet     for (j = 0; j < n; j++) PetscCall(PetscArraycpy(vb + j * lda2, va + j * lda1, m));
2644a5ce6ee0Svictorle   } else {
26459566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(vb, va, A->rmap->n * A->cmap->n));
2646a5ce6ee0Svictorle   }
26479566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(B, &vb));
26489566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &va));
26499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2652273d9f13SBarry Smith }
2653273d9f13SBarry Smith 
2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqDense(Mat A)
2655d71ae5a4SJacob Faibussowitsch {
2656273d9f13SBarry Smith   PetscFunctionBegin;
26579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
26589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
265948a46eb9SPierre Jolivet   if (!A->preallocated) PetscCall(MatSeqDenseSetPreallocation(A, NULL));
26603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26614b0e389bSBarry Smith }
26624b0e389bSBarry Smith 
2663d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatConjugate_SeqDense(Mat A)
2664d71ae5a4SJacob Faibussowitsch {
26654396437dSToby Isaac   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
266606c5243aSJose E. Roman   PetscInt      i, j;
26674396437dSToby Isaac   PetscInt      min = PetscMin(A->rmap->n, A->cmap->n);
2668ca15aa20SStefano Zampini   PetscScalar  *aa;
2669ba337c44SJed Brown 
2670ba337c44SJed Brown   PetscFunctionBegin;
26719566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &aa));
267206c5243aSJose E. Roman   for (j = 0; j < A->cmap->n; j++) {
267306c5243aSJose E. Roman     for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscConj(aa[i + j * mat->lda]);
267406c5243aSJose E. Roman   }
26759566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &aa));
26769371c9d4SSatish Balay   if (mat->tau)
26779371c9d4SSatish Balay     for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]);
26783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2679ba337c44SJed Brown }
2680ba337c44SJed Brown 
2681d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRealPart_SeqDense(Mat A)
2682d71ae5a4SJacob Faibussowitsch {
268306c5243aSJose E. Roman   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
268406c5243aSJose E. Roman   PetscInt      i, j;
2685ca15aa20SStefano Zampini   PetscScalar  *aa;
2686ba337c44SJed Brown 
2687ba337c44SJed Brown   PetscFunctionBegin;
26889566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &aa));
268906c5243aSJose E. Roman   for (j = 0; j < A->cmap->n; j++) {
269006c5243aSJose E. Roman     for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscRealPart(aa[i + j * mat->lda]);
269106c5243aSJose E. Roman   }
26929566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &aa));
26933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2694ba337c44SJed Brown }
2695ba337c44SJed Brown 
2696d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2697d71ae5a4SJacob Faibussowitsch {
269806c5243aSJose E. Roman   Mat_SeqDense *mat = (Mat_SeqDense *)A->data;
269906c5243aSJose E. Roman   PetscInt      i, j;
2700ca15aa20SStefano Zampini   PetscScalar  *aa;
2701ba337c44SJed Brown 
2702ba337c44SJed Brown   PetscFunctionBegin;
27039566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &aa));
270406c5243aSJose E. Roman   for (j = 0; j < A->cmap->n; j++) {
270506c5243aSJose E. Roman     for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscImaginaryPart(aa[i + j * mat->lda]);
270606c5243aSJose E. Roman   }
27079566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &aa));
27083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2709ba337c44SJed Brown }
2710284134d9SBarry Smith 
2711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C)
2712d71ae5a4SJacob Faibussowitsch {
2713d0f46423SBarry Smith   PetscInt  m = A->rmap->n, n = B->cmap->n;
271447d993e7Ssuyashtn   PetscBool cisdense = PETSC_FALSE;
2715a9fe9ddaSSatish Balay 
2716ee16a9a1SHong Zhang   PetscFunctionBegin;
27179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, m, n));
271847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA)
27199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, ""));
272047d993e7Ssuyashtn #endif
272147d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP)
272247d993e7Ssuyashtn   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, ""));
272347d993e7Ssuyashtn #endif
27247a3c3d58SStefano Zampini   if (!cisdense) {
27257a3c3d58SStefano Zampini     PetscBool flg;
27267a3c3d58SStefano Zampini 
27279566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg));
27289566063dSJacob Faibussowitsch     PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE));
27297a3c3d58SStefano Zampini   }
27309566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
27313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2732ee16a9a1SHong Zhang }
2733a9fe9ddaSSatish Balay 
2734d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C)
2735d71ae5a4SJacob Faibussowitsch {
27366718818eSStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data, *c = (Mat_SeqDense *)C->data;
27370805154bSBarry Smith   PetscBLASInt       m, n, k;
2738ca15aa20SStefano Zampini   const PetscScalar *av, *bv;
2739ca15aa20SStefano Zampini   PetscScalar       *cv;
2740a9fe9ddaSSatish Balay   PetscScalar        _DOne = 1.0, _DZero = 0.0;
2741a9fe9ddaSSatish Balay 
2742a9fe9ddaSSatish Balay   PetscFunctionBegin;
27439566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n, &m));
27449566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n, &n));
27459566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &k));
27463ba16761SJacob Faibussowitsch   if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS);
27479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &av));
27489566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &bv));
27499566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C, &cv));
2750792fecdfSBarry Smith   PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda));
27519566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1)));
27529566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &av));
27539566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &bv));
27549566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C, &cv));
27553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2756a9fe9ddaSSatish Balay }
2757a9fe9ddaSSatish Balay 
2758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C)
2759d71ae5a4SJacob Faibussowitsch {
276069f65d41SStefano Zampini   PetscInt  m = A->rmap->n, n = B->rmap->n;
276147d993e7Ssuyashtn   PetscBool cisdense = PETSC_FALSE;
276269f65d41SStefano Zampini 
276369f65d41SStefano Zampini   PetscFunctionBegin;
27649566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, m, n));
276547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA)
27669566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, ""));
276747d993e7Ssuyashtn #endif
276847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP)
276947d993e7Ssuyashtn   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, ""));
277047d993e7Ssuyashtn #endif
27717a3c3d58SStefano Zampini   if (!cisdense) {
27727a3c3d58SStefano Zampini     PetscBool flg;
27737a3c3d58SStefano Zampini 
27749566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg));
27759566063dSJacob Faibussowitsch     PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE));
27767a3c3d58SStefano Zampini   }
27779566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
27783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277969f65d41SStefano Zampini }
278069f65d41SStefano Zampini 
2781d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C)
2782d71ae5a4SJacob Faibussowitsch {
278369f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
278469f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense *)B->data;
278569f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense *)C->data;
27866718818eSStefano Zampini   const PetscScalar *av, *bv;
27876718818eSStefano Zampini   PetscScalar       *cv;
278869f65d41SStefano Zampini   PetscBLASInt       m, n, k;
278969f65d41SStefano Zampini   PetscScalar        _DOne = 1.0, _DZero = 0.0;
279069f65d41SStefano Zampini 
279169f65d41SStefano Zampini   PetscFunctionBegin;
27929566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n, &m));
27939566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n, &n));
27949566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n, &k));
27953ba16761SJacob Faibussowitsch   if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS);
27969566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &av));
27979566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &bv));
27989566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C, &cv));
2799792fecdfSBarry Smith   PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda));
28009566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &av));
28019566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &bv));
28029566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C, &cv));
28039566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1)));
28043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
280569f65d41SStefano Zampini }
280669f65d41SStefano Zampini 
2807d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C)
2808d71ae5a4SJacob Faibussowitsch {
2809d0f46423SBarry Smith   PetscInt  m = A->cmap->n, n = B->cmap->n;
281047d993e7Ssuyashtn   PetscBool cisdense = PETSC_FALSE;
2811a9fe9ddaSSatish Balay 
2812ee16a9a1SHong Zhang   PetscFunctionBegin;
28139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, m, n));
281447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA)
28159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, ""));
281647d993e7Ssuyashtn #endif
281747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP)
281847d993e7Ssuyashtn   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, ""));
281947d993e7Ssuyashtn #endif
28207a3c3d58SStefano Zampini   if (!cisdense) {
28217a3c3d58SStefano Zampini     PetscBool flg;
28227a3c3d58SStefano Zampini 
28239566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg));
28249566063dSJacob Faibussowitsch     PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE));
28257a3c3d58SStefano Zampini   }
28269566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
28273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2828ee16a9a1SHong Zhang }
2829a9fe9ddaSSatish Balay 
2830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C)
2831d71ae5a4SJacob Faibussowitsch {
2832a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
2833a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense *)B->data;
2834a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense *)C->data;
28356718818eSStefano Zampini   const PetscScalar *av, *bv;
28366718818eSStefano Zampini   PetscScalar       *cv;
28370805154bSBarry Smith   PetscBLASInt       m, n, k;
2838a9fe9ddaSSatish Balay   PetscScalar        _DOne = 1.0, _DZero = 0.0;
2839a9fe9ddaSSatish Balay 
2840a9fe9ddaSSatish Balay   PetscFunctionBegin;
28419566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n, &m));
28429566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n, &n));
28439566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n, &k));
28443ba16761SJacob Faibussowitsch   if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS);
28459566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &av));
28469566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &bv));
28479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C, &cv));
2848792fecdfSBarry Smith   PetscCallBLAS("BLASgemm", BLASgemm_("T", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda));
28499566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &av));
28509566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &bv));
28519566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C, &cv));
28529566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1)));
28533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2854a9fe9ddaSSatish Balay }
2855985db425SBarry Smith 
2856d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
2857d71ae5a4SJacob Faibussowitsch {
28584222ddf1SHong Zhang   PetscFunctionBegin;
28594222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
28604222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
28613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28624222ddf1SHong Zhang }
28634222ddf1SHong Zhang 
2864d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
2865d71ae5a4SJacob Faibussowitsch {
28664222ddf1SHong Zhang   PetscFunctionBegin;
28674222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
28684222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
28693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28704222ddf1SHong Zhang }
28714222ddf1SHong Zhang 
2872d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
2873d71ae5a4SJacob Faibussowitsch {
28744222ddf1SHong Zhang   PetscFunctionBegin;
28754222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
28764222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
28773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28784222ddf1SHong Zhang }
28794222ddf1SHong Zhang 
2880d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
2881d71ae5a4SJacob Faibussowitsch {
28824222ddf1SHong Zhang   Mat_Product *product = C->product;
28834222ddf1SHong Zhang 
28844222ddf1SHong Zhang   PetscFunctionBegin;
28854222ddf1SHong Zhang   switch (product->type) {
2886d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2887d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_AB(C));
2888d71ae5a4SJacob Faibussowitsch     break;
2889d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2890d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_AtB(C));
2891d71ae5a4SJacob Faibussowitsch     break;
2892d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2893d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_ABt(C));
2894d71ae5a4SJacob Faibussowitsch     break;
2895d71ae5a4SJacob Faibussowitsch   default:
2896d71ae5a4SJacob Faibussowitsch     break;
28974222ddf1SHong Zhang   }
28983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28994222ddf1SHong Zhang }
29004222ddf1SHong Zhang 
2901d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMax_SeqDense(Mat A, Vec v, PetscInt idx[])
2902d71ae5a4SJacob Faibussowitsch {
2903985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
2904d0f46423SBarry Smith   PetscInt           i, j, m = A->rmap->n, n = A->cmap->n, p;
2905985db425SBarry Smith   PetscScalar       *x;
2906ca15aa20SStefano Zampini   const PetscScalar *aa;
2907985db425SBarry Smith 
2908985db425SBarry Smith   PetscFunctionBegin;
290928b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
29109566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
29119566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &p));
29129566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &aa));
291308401ef6SPierre Jolivet   PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
2914985db425SBarry Smith   for (i = 0; i < m; i++) {
29159371c9d4SSatish Balay     x[i] = aa[i];
29169371c9d4SSatish Balay     if (idx) idx[i] = 0;
2917985db425SBarry Smith     for (j = 1; j < n; j++) {
29189371c9d4SSatish Balay       if (PetscRealPart(x[i]) < PetscRealPart(aa[i + a->lda * j])) {
29199371c9d4SSatish Balay         x[i] = aa[i + a->lda * j];
29209371c9d4SSatish Balay         if (idx) idx[i] = j;
29219371c9d4SSatish Balay       }
2922985db425SBarry Smith     }
2923985db425SBarry Smith   }
29249566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &aa));
29259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
29263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2927985db425SBarry Smith }
2928985db425SBarry Smith 
2929d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A, Vec v, PetscInt idx[])
2930d71ae5a4SJacob Faibussowitsch {
2931985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
2932d0f46423SBarry Smith   PetscInt           i, j, m = A->rmap->n, n = A->cmap->n, p;
2933985db425SBarry Smith   PetscScalar       *x;
2934985db425SBarry Smith   PetscReal          atmp;
2935ca15aa20SStefano Zampini   const PetscScalar *aa;
2936985db425SBarry Smith 
2937985db425SBarry Smith   PetscFunctionBegin;
293828b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
29399566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
29409566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &p));
29419566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &aa));
294208401ef6SPierre Jolivet   PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
2943985db425SBarry Smith   for (i = 0; i < m; i++) {
29449189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2945985db425SBarry Smith     for (j = 1; j < n; j++) {
2946ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i + a->lda * j]);
29479371c9d4SSatish Balay       if (PetscAbsScalar(x[i]) < atmp) {
29489371c9d4SSatish Balay         x[i] = atmp;
29499371c9d4SSatish Balay         if (idx) idx[i] = j;
29509371c9d4SSatish Balay       }
2951985db425SBarry Smith     }
2952985db425SBarry Smith   }
29539566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &aa));
29549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
29553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2956985db425SBarry Smith }
2957985db425SBarry Smith 
2958d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMin_SeqDense(Mat A, Vec v, PetscInt idx[])
2959d71ae5a4SJacob Faibussowitsch {
2960985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
2961d0f46423SBarry Smith   PetscInt           i, j, m = A->rmap->n, n = A->cmap->n, p;
2962985db425SBarry Smith   PetscScalar       *x;
2963ca15aa20SStefano Zampini   const PetscScalar *aa;
2964985db425SBarry Smith 
2965985db425SBarry Smith   PetscFunctionBegin;
296628b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
29679566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &aa));
29689566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
29699566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &p));
297008401ef6SPierre Jolivet   PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
2971985db425SBarry Smith   for (i = 0; i < m; i++) {
29729371c9d4SSatish Balay     x[i] = aa[i];
29739371c9d4SSatish Balay     if (idx) idx[i] = 0;
2974985db425SBarry Smith     for (j = 1; j < n; j++) {
29759371c9d4SSatish Balay       if (PetscRealPart(x[i]) > PetscRealPart(aa[i + a->lda * j])) {
29769371c9d4SSatish Balay         x[i] = aa[i + a->lda * j];
29779371c9d4SSatish Balay         if (idx) idx[i] = j;
29789371c9d4SSatish Balay       }
2979985db425SBarry Smith     }
2980985db425SBarry Smith   }
29819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
29829566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &aa));
29833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2984985db425SBarry Smith }
2985985db425SBarry Smith 
2986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnVector_SeqDense(Mat A, Vec v, PetscInt col)
2987d71ae5a4SJacob Faibussowitsch {
29888d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense *)A->data;
29898d0534beSBarry Smith   PetscScalar       *x;
2990ca15aa20SStefano Zampini   const PetscScalar *aa;
29918d0534beSBarry Smith 
29928d0534beSBarry Smith   PetscFunctionBegin;
299328b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
29949566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &aa));
29959566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
29969566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(x, aa + col * a->lda, A->rmap->n));
29979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
29989566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &aa));
29993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30008d0534beSBarry Smith }
30018d0534beSBarry Smith 
3002d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat A, PetscInt type, PetscReal *reductions)
3003d71ae5a4SJacob Faibussowitsch {
30040716a85fSBarry Smith   PetscInt           i, j, m, n;
30051683a169SBarry Smith   const PetscScalar *a;
30060716a85fSBarry Smith 
30070716a85fSBarry Smith   PetscFunctionBegin;
30089566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
30099566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(reductions, n));
30109566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &a));
3011857cbf51SRichard Tran Mills   if (type == NORM_2) {
30120716a85fSBarry Smith     for (i = 0; i < n; i++) {
3013ad540459SPierre Jolivet       for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j] * a[j]);
301416cd844bSPierre Jolivet       a = PetscSafePointerPlusOffset(a, m);
30150716a85fSBarry Smith     }
3016857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
30170716a85fSBarry Smith     for (i = 0; i < n; i++) {
3018ad540459SPierre Jolivet       for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j]);
301916cd844bSPierre Jolivet       a = PetscSafePointerPlusOffset(a, m);
30200716a85fSBarry Smith     }
3021857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
30220716a85fSBarry Smith     for (i = 0; i < n; i++) {
3023ad540459SPierre Jolivet       for (j = 0; j < m; j++) reductions[i] = PetscMax(PetscAbsScalar(a[j]), reductions[i]);
302416cd844bSPierre Jolivet       a = PetscSafePointerPlusOffset(a, m);
30250716a85fSBarry Smith     }
3026857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
3027a873a8cdSSam Reynolds     for (i = 0; i < n; i++) {
3028ad540459SPierre Jolivet       for (j = 0; j < m; j++) reductions[i] += PetscRealPart(a[j]);
302916cd844bSPierre Jolivet       a = PetscSafePointerPlusOffset(a, m);
3030a873a8cdSSam Reynolds     }
3031857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
3032857cbf51SRichard Tran Mills     for (i = 0; i < n; i++) {
3033ad540459SPierre Jolivet       for (j = 0; j < m; j++) reductions[i] += PetscImaginaryPart(a[j]);
303416cd844bSPierre Jolivet       a = PetscSafePointerPlusOffset(a, m);
3035857cbf51SRichard Tran Mills     }
3036857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
30379566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &a));
3038857cbf51SRichard Tran Mills   if (type == NORM_2) {
3039a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
3040857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
3041a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
30420716a85fSBarry Smith   }
30433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30440716a85fSBarry Smith }
30450716a85fSBarry Smith 
3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetRandom_SeqDense(Mat x, PetscRandom rctx)
3047d71ae5a4SJacob Faibussowitsch {
304873a71a0fSBarry Smith   PetscScalar *a;
3049637a0070SStefano Zampini   PetscInt     lda, m, n, i, j;
305073a71a0fSBarry Smith 
305173a71a0fSBarry Smith   PetscFunctionBegin;
30529566063dSJacob Faibussowitsch   PetscCall(MatGetSize(x, &m, &n));
30539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(x, &lda));
30543faff063SStefano Zampini   PetscCall(MatDenseGetArrayWrite(x, &a));
3055637a0070SStefano Zampini   for (j = 0; j < n; j++) {
305648a46eb9SPierre Jolivet     for (i = 0; i < m; i++) PetscCall(PetscRandomGetValue(rctx, a + j * lda + i));
305773a71a0fSBarry Smith   }
30583faff063SStefano Zampini   PetscCall(MatDenseRestoreArrayWrite(x, &a));
30593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
306073a71a0fSBarry Smith }
306173a71a0fSBarry Smith 
3062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A, PetscBool *missing, PetscInt *d)
3063d71ae5a4SJacob Faibussowitsch {
30643b49f96aSBarry Smith   PetscFunctionBegin;
30653b49f96aSBarry Smith   *missing = PETSC_FALSE;
30663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30673b49f96aSBarry Smith }
306873a71a0fSBarry Smith 
3069ca15aa20SStefano Zampini /* vals is not const */
3070d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A, PetscInt col, PetscScalar **vals)
3071d71ae5a4SJacob Faibussowitsch {
307286aefd0dSHong Zhang   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
3073ca15aa20SStefano Zampini   PetscScalar  *v;
307486aefd0dSHong Zhang 
307586aefd0dSHong Zhang   PetscFunctionBegin;
307628b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
30779566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &v));
3078ca15aa20SStefano Zampini   *vals = v + col * a->lda;
30799566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &v));
30803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
308186aefd0dSHong Zhang }
308286aefd0dSHong Zhang 
3083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A, PetscScalar **vals)
3084d71ae5a4SJacob Faibussowitsch {
308586aefd0dSHong Zhang   PetscFunctionBegin;
3086742765d3SMatthew Knepley   if (vals) *vals = NULL; /* user cannot accidentally use the array later */
30873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
308886aefd0dSHong Zhang }
3089abc3b08eSStefano Zampini 
3090a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense,
3091905e6a2fSBarry Smith                                        MatGetRow_SeqDense,
3092905e6a2fSBarry Smith                                        MatRestoreRow_SeqDense,
3093905e6a2fSBarry Smith                                        MatMult_SeqDense,
309497304618SKris Buschelman                                        /*  4*/ MatMultAdd_SeqDense,
30957c922b88SBarry Smith                                        MatMultTranspose_SeqDense,
30967c922b88SBarry Smith                                        MatMultTransposeAdd_SeqDense,
3097f4259b30SLisandro Dalcin                                        NULL,
3098f4259b30SLisandro Dalcin                                        NULL,
3099f4259b30SLisandro Dalcin                                        NULL,
3100f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
3101905e6a2fSBarry Smith                                        MatLUFactor_SeqDense,
3102905e6a2fSBarry Smith                                        MatCholeskyFactor_SeqDense,
310341f059aeSBarry Smith                                        MatSOR_SeqDense,
3104ec8511deSBarry Smith                                        MatTranspose_SeqDense,
310597304618SKris Buschelman                                        /* 15*/ MatGetInfo_SeqDense,
3106905e6a2fSBarry Smith                                        MatEqual_SeqDense,
3107905e6a2fSBarry Smith                                        MatGetDiagonal_SeqDense,
3108905e6a2fSBarry Smith                                        MatDiagonalScale_SeqDense,
3109905e6a2fSBarry Smith                                        MatNorm_SeqDense,
3110b7103cf4SPierre Jolivet                                        /* 20*/ NULL,
3111b7103cf4SPierre Jolivet                                        NULL,
3112905e6a2fSBarry Smith                                        MatSetOption_SeqDense,
3113905e6a2fSBarry Smith                                        MatZeroEntries_SeqDense,
3114d519adbfSMatthew Knepley                                        /* 24*/ MatZeroRows_SeqDense,
3115f4259b30SLisandro Dalcin                                        NULL,
3116f4259b30SLisandro Dalcin                                        NULL,
3117f4259b30SLisandro Dalcin                                        NULL,
3118f4259b30SLisandro Dalcin                                        NULL,
31194994cf47SJed Brown                                        /* 29*/ MatSetUp_SeqDense,
3120f4259b30SLisandro Dalcin                                        NULL,
3121f4259b30SLisandro Dalcin                                        NULL,
3122f4259b30SLisandro Dalcin                                        NULL,
3123f4259b30SLisandro Dalcin                                        NULL,
3124d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_SeqDense,
3125f4259b30SLisandro Dalcin                                        NULL,
3126f4259b30SLisandro Dalcin                                        NULL,
3127f4259b30SLisandro Dalcin                                        NULL,
3128f4259b30SLisandro Dalcin                                        NULL,
3129d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_SeqDense,
31307dae84e0SHong Zhang                                        MatCreateSubMatrices_SeqDense,
3131f4259b30SLisandro Dalcin                                        NULL,
31324b0e389bSBarry Smith                                        MatGetValues_SeqDense,
3133a5ae1ecdSBarry Smith                                        MatCopy_SeqDense,
3134d519adbfSMatthew Knepley                                        /* 44*/ MatGetRowMax_SeqDense,
3135a5ae1ecdSBarry Smith                                        MatScale_SeqDense,
31362f605a99SJose E. Roman                                        MatShift_SeqDense,
3137f4259b30SLisandro Dalcin                                        NULL,
31383f49a652SStefano Zampini                                        MatZeroRowsColumns_SeqDense,
313973a71a0fSBarry Smith                                        /* 49*/ MatSetRandom_SeqDense,
3140f4259b30SLisandro Dalcin                                        NULL,
3141f4259b30SLisandro Dalcin                                        NULL,
3142f4259b30SLisandro Dalcin                                        NULL,
3143f4259b30SLisandro Dalcin                                        NULL,
3144f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
3145f4259b30SLisandro Dalcin                                        NULL,
3146f4259b30SLisandro Dalcin                                        NULL,
3147f4259b30SLisandro Dalcin                                        NULL,
3148f4259b30SLisandro Dalcin                                        NULL,
3149023c16fcSToby Isaac                                        /* 59*/ MatCreateSubMatrix_SeqDense,
3150e03a110bSBarry Smith                                        MatDestroy_SeqDense,
3151e03a110bSBarry Smith                                        MatView_SeqDense,
3152f4259b30SLisandro Dalcin                                        NULL,
3153f4259b30SLisandro Dalcin                                        NULL,
3154f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
3155f4259b30SLisandro Dalcin                                        NULL,
3156f4259b30SLisandro Dalcin                                        NULL,
3157f4259b30SLisandro Dalcin                                        NULL,
3158f4259b30SLisandro Dalcin                                        NULL,
3159d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_SeqDense,
3160f4259b30SLisandro Dalcin                                        NULL,
3161f4259b30SLisandro Dalcin                                        NULL,
3162f4259b30SLisandro Dalcin                                        NULL,
3163f4259b30SLisandro Dalcin                                        NULL,
3164f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
3165f4259b30SLisandro Dalcin                                        NULL,
3166f4259b30SLisandro Dalcin                                        NULL,
3167f4259b30SLisandro Dalcin                                        NULL,
3168f4259b30SLisandro Dalcin                                        NULL,
3169f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
3170f4259b30SLisandro Dalcin                                        NULL,
3171f4259b30SLisandro Dalcin                                        NULL,
3172f4259b30SLisandro Dalcin                                        NULL,
31735bba2384SShri Abhyankar                                        /* 83*/ MatLoad_SeqDense,
3174637a0070SStefano Zampini                                        MatIsSymmetric_SeqDense,
31751cbb95d3SBarry Smith                                        MatIsHermitian_SeqDense,
3176f4259b30SLisandro Dalcin                                        NULL,
3177f4259b30SLisandro Dalcin                                        NULL,
3178f4259b30SLisandro Dalcin                                        NULL,
3179f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
3180f4259b30SLisandro Dalcin                                        NULL,
3181a9fe9ddaSSatish Balay                                        MatMatMultNumeric_SeqDense_SeqDense,
3182f4259b30SLisandro Dalcin                                        NULL,
3183f4259b30SLisandro Dalcin                                        NULL,
3184f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
3185f4259b30SLisandro Dalcin                                        NULL,
3186f4259b30SLisandro Dalcin                                        NULL,
318769f65d41SStefano Zampini                                        MatMatTransposeMultNumeric_SeqDense_SeqDense,
3188f4259b30SLisandro Dalcin                                        NULL,
31894222ddf1SHong Zhang                                        /* 99*/ MatProductSetFromOptions_SeqDense,
3190f4259b30SLisandro Dalcin                                        NULL,
3191f4259b30SLisandro Dalcin                                        NULL,
3192ba337c44SJed Brown                                        MatConjugate_SeqDense,
3193f4259b30SLisandro Dalcin                                        NULL,
3194f4259b30SLisandro Dalcin                                        /*104*/ NULL,
3195ba337c44SJed Brown                                        MatRealPart_SeqDense,
3196ba337c44SJed Brown                                        MatImaginaryPart_SeqDense,
3197f4259b30SLisandro Dalcin                                        NULL,
3198f4259b30SLisandro Dalcin                                        NULL,
3199f4259b30SLisandro Dalcin                                        /*109*/ NULL,
3200f4259b30SLisandro Dalcin                                        NULL,
32018d0534beSBarry Smith                                        MatGetRowMin_SeqDense,
3202aabbc4fbSShri Abhyankar                                        MatGetColumnVector_SeqDense,
32033b49f96aSBarry Smith                                        MatMissingDiagonal_SeqDense,
3204f4259b30SLisandro Dalcin                                        /*114*/ NULL,
3205f4259b30SLisandro Dalcin                                        NULL,
3206f4259b30SLisandro Dalcin                                        NULL,
3207f4259b30SLisandro Dalcin                                        NULL,
3208f4259b30SLisandro Dalcin                                        NULL,
3209f4259b30SLisandro Dalcin                                        /*119*/ NULL,
3210f4259b30SLisandro Dalcin                                        NULL,
3211459e8d23SBlanca Mellado Pinto                                        MatMultHermitianTranspose_SeqDense,
3212459e8d23SBlanca Mellado Pinto                                        MatMultHermitianTransposeAdd_SeqDense,
3213f4259b30SLisandro Dalcin                                        NULL,
3214f4259b30SLisandro Dalcin                                        /*124*/ NULL,
3215a873a8cdSSam Reynolds                                        MatGetColumnReductions_SeqDense,
3216f4259b30SLisandro Dalcin                                        NULL,
3217f4259b30SLisandro Dalcin                                        NULL,
3218f4259b30SLisandro Dalcin                                        NULL,
3219f4259b30SLisandro Dalcin                                        /*129*/ NULL,
3220f4259b30SLisandro Dalcin                                        NULL,
3221f4259b30SLisandro Dalcin                                        NULL,
322275648e8dSHong Zhang                                        MatTransposeMatMultNumeric_SeqDense_SeqDense,
3223f4259b30SLisandro Dalcin                                        NULL,
3224f4259b30SLisandro Dalcin                                        /*134*/ NULL,
3225f4259b30SLisandro Dalcin                                        NULL,
3226f4259b30SLisandro Dalcin                                        NULL,
3227f4259b30SLisandro Dalcin                                        NULL,
3228f4259b30SLisandro Dalcin                                        NULL,
3229f4259b30SLisandro Dalcin                                        /*139*/ NULL,
3230f4259b30SLisandro Dalcin                                        NULL,
3231f4259b30SLisandro Dalcin                                        NULL,
3232f4259b30SLisandro Dalcin                                        NULL,
3233f4259b30SLisandro Dalcin                                        NULL,
32344222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_SeqDense,
3235f4259b30SLisandro Dalcin                                        /*145*/ NULL,
3236f4259b30SLisandro Dalcin                                        NULL,
323799a7f59eSMark Adams                                        NULL,
323899a7f59eSMark Adams                                        NULL,
32397fb60732SBarry Smith                                        NULL,
3240dec0b466SHong Zhang                                        /*150*/ NULL,
3241eede4a3fSMark Adams                                        NULL,
32424cc2b5b5SPierre Jolivet                                        NULL,
324342ce410bSJunchao Zhang                                        NULL,
324442ce410bSJunchao Zhang                                        NULL,
3245fe1fc275SAlexander                                        /*155*/ NULL,
3246dec0b466SHong Zhang                                        NULL};
324790ace30eSBarry Smith 
32485d83a8b1SBarry Smith /*@
324911a5261eSBarry Smith   MatCreateSeqDense - Creates a `MATSEQDENSE` that
3250fb850c59SBarry Smith   is stored in column major order (the usual Fortran format).
3251289bc588SBarry Smith 
3252d083f849SBarry Smith   Collective
3253db81eaa0SLois Curfman McInnes 
325420563c6bSBarry Smith   Input Parameters:
325511a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF`
32560c775827SLois Curfman McInnes . m    - number of rows
325718f449edSLois Curfman McInnes . n    - number of columns
32582ef1f0ffSBarry Smith - data - optional location of matrix data in column major order.  Use `NULL` for PETSc
3259dfc5480cSLois Curfman McInnes          to control all matrix memory allocation.
326020563c6bSBarry Smith 
326120563c6bSBarry Smith   Output Parameter:
326244cd7ae7SLois Curfman McInnes . A - the matrix
326320563c6bSBarry Smith 
32642ef1f0ffSBarry Smith   Level: intermediate
32652ef1f0ffSBarry Smith 
326611a5261eSBarry Smith   Note:
326718f449edSLois Curfman McInnes   The data input variable is intended primarily for Fortran programmers
326818f449edSLois Curfman McInnes   who wish to allocate their own matrix memory space.  Most users should
32692ef1f0ffSBarry Smith   set `data` = `NULL`.
327018f449edSLois Curfman McInnes 
3271fb850c59SBarry Smith   Developer Note:
3272fb850c59SBarry Smith   Many of the matrix operations for this variant use the BLAS and LAPACK routines.
3273fb850c59SBarry Smith 
32741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()`
327520563c6bSBarry Smith @*/
32765d83a8b1SBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscScalar data[], Mat *A)
3277d71ae5a4SJacob Faibussowitsch {
32783a40ed3dSBarry Smith   PetscFunctionBegin;
32799566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
32809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
32819566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQDENSE));
32829566063dSJacob Faibussowitsch   PetscCall(MatSeqDenseSetPreallocation(*A, data));
32833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3284273d9f13SBarry Smith }
3285273d9f13SBarry Smith 
32865d83a8b1SBarry Smith /*@
328711a5261eSBarry Smith   MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements of a `MATSEQDENSE` matrix
3288273d9f13SBarry Smith 
3289d083f849SBarry Smith   Collective
3290273d9f13SBarry Smith 
3291273d9f13SBarry Smith   Input Parameters:
32921c4f3114SJed Brown + B    - the matrix
32932ef1f0ffSBarry Smith - data - the array (or `NULL`)
32942ef1f0ffSBarry Smith 
32952ef1f0ffSBarry Smith   Level: intermediate
3296273d9f13SBarry Smith 
329711a5261eSBarry Smith   Note:
3298273d9f13SBarry Smith   The data input variable is intended primarily for Fortran programmers
3299273d9f13SBarry Smith   who wish to allocate their own matrix memory space.  Most users should
3300284134d9SBarry Smith   need not call this routine.
3301273d9f13SBarry Smith 
33021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()`, `MatDenseSetLDA()`
3303273d9f13SBarry Smith @*/
3304d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation(Mat B, PetscScalar data[])
3305d71ae5a4SJacob Faibussowitsch {
3306a23d5eceSKris Buschelman   PetscFunctionBegin;
3307d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
3308cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqDenseSetPreallocation_C", (Mat, PetscScalar[]), (B, data));
33093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3310a23d5eceSKris Buschelman }
3311a23d5eceSKris Buschelman 
3312d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B, PetscScalar *data)
3313d71ae5a4SJacob Faibussowitsch {
3314ad16ce7aSStefano Zampini   Mat_SeqDense *b = (Mat_SeqDense *)B->data;
3315273d9f13SBarry Smith 
3316273d9f13SBarry Smith   PetscFunctionBegin;
331728b400f6SJacob Faibussowitsch   PetscCheck(!b->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
3318273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
3319a868139aSShri Abhyankar 
33209566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
33219566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
332234ef9618SShri Abhyankar 
33236497c311SBarry Smith   if (b->lda <= 0) PetscCall(PetscBLASIntCast(B->rmap->n, &b->lda));
332486d161a7SShri Abhyankar 
33259e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
33269566063dSJacob Faibussowitsch     if (!b->user_alloc) PetscCall(PetscFree(b->v));
33279566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1((size_t)b->lda * B->cmap->n, &b->v));
33282205254eSKarl Rupp 
33299e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
3330273d9f13SBarry Smith   } else { /* user-allocated storage */
33319566063dSJacob Faibussowitsch     if (!b->user_alloc) PetscCall(PetscFree(b->v));
3332273d9f13SBarry Smith     b->v          = data;
3333273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
3334273d9f13SBarry Smith   }
33350450473dSBarry Smith   B->assembled = PETSC_TRUE;
33363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3337273d9f13SBarry Smith }
3338273d9f13SBarry Smith 
333965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
3340d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
3341d71ae5a4SJacob Faibussowitsch {
3342d77f618aSHong Zhang   Mat                mat_elemental;
33431683a169SBarry Smith   const PetscScalar *array;
33441683a169SBarry Smith   PetscScalar       *v_colwise;
3345d77f618aSHong Zhang   PetscInt           M = A->rmap->N, N = A->cmap->N, i, j, k, *rows, *cols;
3346d77f618aSHong Zhang 
33478baccfbdSHong Zhang   PetscFunctionBegin;
33489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(M * N, &v_colwise, M, &rows, N, &cols));
33499566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &array));
3350d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
3351d77f618aSHong Zhang   k = 0;
3352d77f618aSHong Zhang   for (j = 0; j < N; j++) {
3353d77f618aSHong Zhang     cols[j] = j;
3354ad540459SPierre Jolivet     for (i = 0; i < M; i++) v_colwise[j * M + i] = array[k++];
3355d77f618aSHong Zhang   }
3356ad540459SPierre Jolivet   for (i = 0; i < M; i++) rows[i] = i;
33579566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &array));
3358d77f618aSHong Zhang 
33599566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental));
33609566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N));
33619566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat_elemental, MATELEMENTAL));
33629566063dSJacob Faibussowitsch   PetscCall(MatSetUp(mat_elemental));
3363d77f618aSHong Zhang 
3364d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
33659566063dSJacob Faibussowitsch   PetscCall(MatSetValues(mat_elemental, M, rows, N, cols, v_colwise, ADD_VALUES));
33669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY));
33679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY));
33689566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v_colwise, rows, cols));
3369d77f618aSHong Zhang 
3370511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
33719566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &mat_elemental));
3372d77f618aSHong Zhang   } else {
3373d77f618aSHong Zhang     *newmat = mat_elemental;
3374d77f618aSHong Zhang   }
33753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33768baccfbdSHong Zhang }
337765b80a83SHong Zhang #endif
33788baccfbdSHong Zhang 
3379d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA_SeqDense(Mat B, PetscInt lda)
3380d71ae5a4SJacob Faibussowitsch {
33811b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense *)B->data;
33827422da62SJose E. Roman   PetscBool     data;
338321a2c019SBarry Smith 
33841b807ce4Svictorle   PetscFunctionBegin;
3385835f2295SStefano Zampini   data = (B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE;
3386aed4548fSBarry Smith   PetscCheck(b->user_alloc || !data || b->lda == lda, PETSC_COMM_SELF, PETSC_ERR_ORDER, "LDA cannot be changed after allocation of internal storage");
338708401ef6SPierre Jolivet   PetscCheck(lda >= B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "LDA %" PetscInt_FMT " must be at least matrix dimension %" PetscInt_FMT, lda, B->rmap->n);
33886497c311SBarry Smith   PetscCall(PetscBLASIntCast(lda, &b->lda));
33893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33901b807ce4Svictorle }
33911b807ce4Svictorle 
3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3393d71ae5a4SJacob Faibussowitsch {
3394d528f656SJakub Kruzik   PetscFunctionBegin;
33959566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIDense(comm, inmat, n, scall, outmat));
33963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3397d528f656SJakub Kruzik }
3398d528f656SJakub Kruzik 
3399d16ceb75SStefano Zampini PetscErrorCode MatDenseCreateColumnVec_Private(Mat A, Vec *v)
3400d16ceb75SStefano Zampini {
3401d16ceb75SStefano Zampini   PetscBool   isstd, iskok, iscuda, iship;
3402d16ceb75SStefano Zampini   PetscMPIInt size;
3403d16ceb75SStefano Zampini #if PetscDefined(HAVE_CUDA) || PetscDefined(HAVE_HIP)
3404d16ceb75SStefano Zampini   /* we pass the data of A, to prevent allocating needless GPU memory the first time VecCUPMPlaceArray is called. */
3405d16ceb75SStefano Zampini   const PetscScalar *a;
3406d16ceb75SStefano Zampini #endif
3407d16ceb75SStefano Zampini 
3408d16ceb75SStefano Zampini   PetscFunctionBegin;
3409d16ceb75SStefano Zampini   *v = NULL;
3410d16ceb75SStefano Zampini   PetscCall(PetscStrcmpAny(A->defaultvectype, &isstd, VECSTANDARD, VECSEQ, VECMPI, ""));
3411d16ceb75SStefano Zampini   PetscCall(PetscStrcmpAny(A->defaultvectype, &iskok, VECKOKKOS, VECSEQKOKKOS, VECMPIKOKKOS, ""));
3412d16ceb75SStefano Zampini   PetscCall(PetscStrcmpAny(A->defaultvectype, &iscuda, VECCUDA, VECSEQCUDA, VECMPICUDA, ""));
3413d16ceb75SStefano Zampini   PetscCall(PetscStrcmpAny(A->defaultvectype, &iship, VECHIP, VECSEQHIP, VECMPIHIP, ""));
3414d16ceb75SStefano Zampini   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
3415d16ceb75SStefano Zampini   if (isstd) {
3416d16ceb75SStefano Zampini     if (size > 1) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, v));
3417d16ceb75SStefano Zampini     else PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, v));
3418d16ceb75SStefano Zampini   } else if (iskok) {
3419d16ceb75SStefano Zampini     PetscCheck(PetscDefined(HAVE_KOKKOS_KERNELS), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using KOKKOS kernels support");
3420d16ceb75SStefano Zampini #if PetscDefined(HAVE_KOKKOS_KERNELS)
3421d16ceb75SStefano Zampini     if (size > 1) PetscCall(VecCreateMPIKokkosWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, v));
3422d16ceb75SStefano Zampini     else PetscCall(VecCreateSeqKokkosWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, v));
3423d16ceb75SStefano Zampini #endif
3424d16ceb75SStefano Zampini   } else if (iscuda) {
3425d16ceb75SStefano Zampini     PetscCheck(PetscDefined(HAVE_CUDA), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using CUDA support");
3426d16ceb75SStefano Zampini #if PetscDefined(HAVE_CUDA)
3427d16ceb75SStefano Zampini     PetscCall(MatDenseCUDAGetArrayRead(A, &a));
3428d16ceb75SStefano Zampini     if (size > 1) PetscCall(VecCreateMPICUDAWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, a, v));
3429d16ceb75SStefano Zampini     else PetscCall(VecCreateSeqCUDAWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, a, v));
3430d16ceb75SStefano Zampini #endif
3431d16ceb75SStefano Zampini   } else if (iship) {
3432d16ceb75SStefano Zampini     PetscCheck(PetscDefined(HAVE_HIP), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using HIP support");
3433d16ceb75SStefano Zampini #if PetscDefined(HAVE_HIP)
3434d16ceb75SStefano Zampini     PetscCall(MatDenseHIPGetArrayRead(A, &a));
3435d16ceb75SStefano Zampini     if (size > 1) PetscCall(VecCreateMPIHIPWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, a, v));
3436d16ceb75SStefano Zampini     else PetscCall(VecCreateSeqHIPWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, a, v));
3437d16ceb75SStefano Zampini #endif
3438d16ceb75SStefano Zampini   }
3439d16ceb75SStefano Zampini   PetscCheck(*v, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not coded for type %s", A->defaultvectype);
3440d16ceb75SStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
3441d16ceb75SStefano Zampini }
3442d16ceb75SStefano Zampini 
3443d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A, PetscInt col, Vec *v)
3444d71ae5a4SJacob Faibussowitsch {
34456947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
34466947451fSStefano Zampini 
34476947451fSStefano Zampini   PetscFunctionBegin;
344828b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
344928b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
3450d16ceb75SStefano Zampini   if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec));
34516947451fSStefano Zampini   a->vecinuse = col + 1;
34529566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, (PetscScalar **)&a->ptrinuse));
34539566063dSJacob Faibussowitsch   PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)a->lda));
34546947451fSStefano Zampini   *v = a->cvec;
34553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34566947451fSStefano Zampini }
34576947451fSStefano Zampini 
3458d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A, PetscInt col, Vec *v)
3459d71ae5a4SJacob Faibussowitsch {
34606947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
34616947451fSStefano Zampini 
34626947451fSStefano Zampini   PetscFunctionBegin;
346328b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first");
346428b400f6SJacob Faibussowitsch   PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector");
34654186a4bbSPierre Jolivet   VecCheckAssembled(a->cvec);
34666947451fSStefano Zampini   a->vecinuse = 0;
34679566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, (PetscScalar **)&a->ptrinuse));
34689566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
346975f6d85dSStefano Zampini   if (v) *v = NULL;
34703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34716947451fSStefano Zampini }
34726947451fSStefano Zampini 
3473d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v)
3474d71ae5a4SJacob Faibussowitsch {
34756947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
34766947451fSStefano Zampini 
34776947451fSStefano Zampini   PetscFunctionBegin;
347828b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
347928b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
3480d16ceb75SStefano Zampini   if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec));
34816947451fSStefano Zampini   a->vecinuse = col + 1;
34829566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A, &a->ptrinuse));
34838e3a54c0SPierre Jolivet   PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)a->lda)));
34849566063dSJacob Faibussowitsch   PetscCall(VecLockReadPush(a->cvec));
34856947451fSStefano Zampini   *v = a->cvec;
34863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34876947451fSStefano Zampini }
34886947451fSStefano Zampini 
3489d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v)
3490d71ae5a4SJacob Faibussowitsch {
34916947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
34926947451fSStefano Zampini 
34936947451fSStefano Zampini   PetscFunctionBegin;
349428b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first");
349528b400f6SJacob Faibussowitsch   PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector");
34964186a4bbSPierre Jolivet   VecCheckAssembled(a->cvec);
34976947451fSStefano Zampini   a->vecinuse = 0;
34989566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A, &a->ptrinuse));
34999566063dSJacob Faibussowitsch   PetscCall(VecLockReadPop(a->cvec));
35009566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
350175f6d85dSStefano Zampini   if (v) *v = NULL;
35023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35036947451fSStefano Zampini }
35046947451fSStefano Zampini 
3505d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v)
3506d71ae5a4SJacob Faibussowitsch {
35076947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
35086947451fSStefano Zampini 
35096947451fSStefano Zampini   PetscFunctionBegin;
351028b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
351128b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
3512d16ceb75SStefano Zampini   if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec));
35136947451fSStefano Zampini   a->vecinuse = col + 1;
35149566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(A, (PetscScalar **)&a->ptrinuse));
35158e3a54c0SPierre Jolivet   PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)a->lda)));
35166947451fSStefano Zampini   *v = a->cvec;
35173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35186947451fSStefano Zampini }
35196947451fSStefano Zampini 
3520d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v)
3521d71ae5a4SJacob Faibussowitsch {
35226947451fSStefano Zampini   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
35236947451fSStefano Zampini 
35246947451fSStefano Zampini   PetscFunctionBegin;
352528b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first");
352628b400f6SJacob Faibussowitsch   PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector");
35274186a4bbSPierre Jolivet   VecCheckAssembled(a->cvec);
35286947451fSStefano Zampini   a->vecinuse = 0;
35299566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(A, (PetscScalar **)&a->ptrinuse));
35309566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
353175f6d85dSStefano Zampini   if (v) *v = NULL;
35323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35336947451fSStefano Zampini }
35346947451fSStefano Zampini 
3535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v)
3536d71ae5a4SJacob Faibussowitsch {
35375ea7661aSPierre Jolivet   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
35385ea7661aSPierre Jolivet 
35395ea7661aSPierre Jolivet   PetscFunctionBegin;
354028b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first");
354128b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first");
3542a2748737SPierre Jolivet   if (a->cmat && (cend - cbegin != a->cmat->cmap->N || rend - rbegin != a->cmat->rmap->N)) PetscCall(MatDestroy(&a->cmat));
35435ea7661aSPierre Jolivet   if (!a->cmat) {
35448e3a54c0SPierre Jolivet     PetscCall(MatCreateDense(PetscObjectComm((PetscObject)A), rend - rbegin, PETSC_DECIDE, rend - rbegin, cend - cbegin, PetscSafePointerPlusOffset(a->v, rbegin + (size_t)cbegin * a->lda), &a->cmat));
35455ea7661aSPierre Jolivet   } else {
35468e3a54c0SPierre Jolivet     PetscCall(MatDensePlaceArray(a->cmat, PetscSafePointerPlusOffset(a->v, rbegin + (size_t)cbegin * a->lda)));
35475ea7661aSPierre Jolivet   }
35489566063dSJacob Faibussowitsch   PetscCall(MatDenseSetLDA(a->cmat, a->lda));
35495ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
35505ea7661aSPierre Jolivet   *v          = a->cmat;
355147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
355275f6d85dSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
355375f6d85dSStefano Zampini #endif
35543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35555ea7661aSPierre Jolivet }
35565ea7661aSPierre Jolivet 
3557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A, Mat *v)
3558d71ae5a4SJacob Faibussowitsch {
35595ea7661aSPierre Jolivet   Mat_SeqDense *a = (Mat_SeqDense *)A->data;
35605ea7661aSPierre Jolivet 
35615ea7661aSPierre Jolivet   PetscFunctionBegin;
356228b400f6SJacob Faibussowitsch   PetscCheck(a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first");
356328b400f6SJacob Faibussowitsch   PetscCheck(a->cmat, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column matrix");
356408401ef6SPierre Jolivet   PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()");
35655ea7661aSPierre Jolivet   a->matinuse = 0;
35669566063dSJacob Faibussowitsch   PetscCall(MatDenseResetArray(a->cmat));
3567742765d3SMatthew Knepley   if (v) *v = NULL;
356847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
35693faff063SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
35703faff063SStefano Zampini #endif
35713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35725ea7661aSPierre Jolivet }
35735ea7661aSPierre Jolivet 
35740bad9183SKris Buschelman /*MC
3575fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
35760bad9183SKris Buschelman 
35772ef1f0ffSBarry Smith    Options Database Key:
357811a5261eSBarry Smith . -mat_type seqdense - sets the matrix type to `MATSEQDENSE` during a call to `MatSetFromOptions()`
35790bad9183SKris Buschelman 
35800bad9183SKris Buschelman   Level: beginner
35810bad9183SKris Buschelman 
35821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreateSeqDense()`
35830bad9183SKris Buschelman M*/
3584d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreate_SeqDense(Mat B)
3585d71ae5a4SJacob Faibussowitsch {
3586273d9f13SBarry Smith   Mat_SeqDense *b;
35877c334f02SBarry Smith   PetscMPIInt   size;
3588273d9f13SBarry Smith 
3589273d9f13SBarry Smith   PetscFunctionBegin;
35909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
359108401ef6SPierre Jolivet   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1");
359255659b69SBarry Smith 
35934dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
359444cd7ae7SLois Curfman McInnes   B->data   = (void *)b;
3595aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
359618f449edSLois Curfman McInnes 
3597273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
35984e220ebcSLois Curfman McInnes 
35999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatQRFactor_C", MatQRFactor_SeqDense));
36009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetLDA_C", MatDenseGetLDA_SeqDense));
36019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseSetLDA_C", MatDenseSetLDA_SeqDense));
36029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArray_C", MatDenseGetArray_SeqDense));
36039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArray_C", MatDenseRestoreArray_SeqDense));
36049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDensePlaceArray_C", MatDensePlaceArray_SeqDense));
36059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseResetArray_C", MatDenseResetArray_SeqDense));
36069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseReplaceArray_C", MatDenseReplaceArray_SeqDense));
36079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayRead_C", MatDenseGetArray_SeqDense));
36089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayRead_C", MatDenseRestoreArray_SeqDense));
36099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayWrite_C", MatDenseGetArray_SeqDense));
36109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArray_SeqDense));
36119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqaij_C", MatConvert_SeqDense_SeqAIJ));
36128baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
36139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_elemental_C", MatConvert_SeqDense_Elemental));
36148baccfbdSHong Zhang #endif
3615d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
36169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_scalapack_C", MatConvert_Dense_ScaLAPACK));
3617d24d4204SJose E. Roman #endif
36182bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
36199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensecuda_C", MatConvert_SeqDense_SeqDenseCUDA));
36209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", MatProductSetFromOptions_SeqDense));
36219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdense_C", MatProductSetFromOptions_SeqDense));
36229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensecuda_C", MatProductSetFromOptions_SeqDense));
36232bf066beSStefano Zampini #endif
362447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP)
362547d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensehip_C", MatConvert_SeqDense_SeqDenseHIP));
362647d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", MatProductSetFromOptions_SeqDense));
362747d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdense_C", MatProductSetFromOptions_SeqDense));
362847d993e7Ssuyashtn   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensehip_C", MatProductSetFromOptions_SeqDense));
362947d993e7Ssuyashtn #endif
36309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqDenseSetPreallocation_C", MatSeqDenseSetPreallocation_SeqDense));
36319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqaij_seqdense_C", MatProductSetFromOptions_SeqAIJ_SeqDense));
36329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdense_C", MatProductSetFromOptions_SeqDense));
36339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense));
36349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqsbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense));
363596e6d5c4SRichard Tran Mills 
36369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumn_C", MatDenseGetColumn_SeqDense));
36379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_SeqDense));
36389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_SeqDense));
36399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_SeqDense));
36409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_SeqDense));
36419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_SeqDense));
36429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_SeqDense));
36439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_SeqDense));
36449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_SeqDense));
36459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_SeqDense));
36460be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultAddColumnRange_C", MatMultAddColumnRange_SeqDense));
36470be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultHermitianTransposeColumnRange_C", MatMultHermitianTransposeColumnRange_SeqDense));
36480be0d8bdSHansol Suh   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultHermitianTransposeAddColumnRange_C", MatMultHermitianTransposeAddColumnRange_SeqDense));
36499566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQDENSE));
36503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3651289bc588SBarry Smith }
365286aefd0dSHong Zhang 
365386aefd0dSHong Zhang /*@C
365411a5261eSBarry Smith   MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call `MatDenseRestoreColumn()` to avoid memory bleeding.
365586aefd0dSHong Zhang 
365686aefd0dSHong Zhang   Not Collective
365786aefd0dSHong Zhang 
36585ea7661aSPierre Jolivet   Input Parameters:
3659fe59aa6dSJacob Faibussowitsch + A   - a `MATSEQDENSE` or `MATMPIDENSE` matrix
366086aefd0dSHong Zhang - col - column index
366186aefd0dSHong Zhang 
366286aefd0dSHong Zhang   Output Parameter:
366386aefd0dSHong Zhang . vals - pointer to the data
366486aefd0dSHong Zhang 
366586aefd0dSHong Zhang   Level: intermediate
366686aefd0dSHong Zhang 
366711a5261eSBarry Smith   Note:
366811a5261eSBarry Smith   Use `MatDenseGetColumnVec()` to get access to a column of a `MATDENSE` treated as a `Vec`
366911a5261eSBarry Smith 
36701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreColumn()`, `MatDenseGetColumnVec()`
367186aefd0dSHong Zhang @*/
36725d83a8b1SBarry Smith PetscErrorCode MatDenseGetColumn(Mat A, PetscInt col, PetscScalar *vals[])
3673d71ae5a4SJacob Faibussowitsch {
367486aefd0dSHong Zhang   PetscFunctionBegin;
3675d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3676d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
36774f572ea9SToby Isaac   PetscAssertPointer(vals, 3);
3678cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetColumn_C", (Mat, PetscInt, PetscScalar **), (A, col, vals));
36793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
368086aefd0dSHong Zhang }
368186aefd0dSHong Zhang 
368286aefd0dSHong Zhang /*@C
368311a5261eSBarry Smith   MatDenseRestoreColumn - returns access to a column of a `MATDENSE` matrix which is returned by `MatDenseGetColumn()`.
368486aefd0dSHong Zhang 
368586aefd0dSHong Zhang   Not Collective
368686aefd0dSHong Zhang 
3687742765d3SMatthew Knepley   Input Parameters:
3688fe59aa6dSJacob Faibussowitsch + A    - a `MATSEQDENSE` or `MATMPIDENSE` matrix
36892ef1f0ffSBarry Smith - vals - pointer to the data (may be `NULL`)
369086aefd0dSHong Zhang 
369186aefd0dSHong Zhang   Level: intermediate
369286aefd0dSHong Zhang 
36931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetColumn()`
369486aefd0dSHong Zhang @*/
36955d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreColumn(Mat A, PetscScalar *vals[])
3696d71ae5a4SJacob Faibussowitsch {
369786aefd0dSHong Zhang   PetscFunctionBegin;
3698d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
36994f572ea9SToby Isaac   PetscAssertPointer(vals, 2);
3700cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreColumn_C", (Mat, PetscScalar **), (A, vals));
37013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
370286aefd0dSHong Zhang }
37036947451fSStefano Zampini 
37040f74d2c1SSatish Balay /*@
370511a5261eSBarry Smith   MatDenseGetColumnVec - Gives read-write access to a column of a `MATDENSE` matrix, represented as a `Vec`.
37066947451fSStefano Zampini 
37076947451fSStefano Zampini   Collective
37086947451fSStefano Zampini 
37095ea7661aSPierre Jolivet   Input Parameters:
3710fe59aa6dSJacob Faibussowitsch + A   - the `Mat` object
37116947451fSStefano Zampini - col - the column index
37126947451fSStefano Zampini 
37136947451fSStefano Zampini   Output Parameter:
37146947451fSStefano Zampini . v - the vector
37156947451fSStefano Zampini 
37162ef1f0ffSBarry Smith   Level: intermediate
37172ef1f0ffSBarry Smith 
37186947451fSStefano Zampini   Notes:
371911a5261eSBarry Smith   The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVec()` when the vector is no longer needed.
372011a5261eSBarry Smith 
372111a5261eSBarry Smith   Use `MatDenseGetColumnVecRead()` to obtain read-only access or `MatDenseGetColumnVecWrite()` for write-only access.
37226947451fSStefano Zampini 
37231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`, `MatDenseGetColumn()`
37246947451fSStefano Zampini @*/
3725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec(Mat A, PetscInt col, Vec *v)
3726d71ae5a4SJacob Faibussowitsch {
37276947451fSStefano Zampini   PetscFunctionBegin;
37286947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
37296947451fSStefano Zampini   PetscValidType(A, 1);
37306947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
37314f572ea9SToby Isaac   PetscAssertPointer(v, 3);
373228b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
37332cf15c64SPierre Jolivet   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3734cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v));
37353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37366947451fSStefano Zampini }
37376947451fSStefano Zampini 
37380f74d2c1SSatish Balay /*@
3739fb850c59SBarry Smith   MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVec()`.
37406947451fSStefano Zampini 
37416947451fSStefano Zampini   Collective
37426947451fSStefano Zampini 
37435ea7661aSPierre Jolivet   Input Parameters:
3744fb850c59SBarry Smith + A   - the `Mat` object
37456947451fSStefano Zampini . col - the column index
3746fb850c59SBarry Smith - v   - the `Vec` object (may be `NULL`)
37476947451fSStefano Zampini 
37486947451fSStefano Zampini   Level: intermediate
37496947451fSStefano Zampini 
37501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`
37516947451fSStefano Zampini @*/
3752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec(Mat A, PetscInt col, Vec *v)
3753d71ae5a4SJacob Faibussowitsch {
37546947451fSStefano Zampini   PetscFunctionBegin;
37556947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
37566947451fSStefano Zampini   PetscValidType(A, 1);
37576947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
375808401ef6SPierre Jolivet   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
37592cf15c64SPierre Jolivet   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3760cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v));
37613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37626947451fSStefano Zampini }
37636947451fSStefano Zampini 
37640f74d2c1SSatish Balay /*@
3765fb850c59SBarry Smith   MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a `Vec`.
37666947451fSStefano Zampini 
37676947451fSStefano Zampini   Collective
37686947451fSStefano Zampini 
37695ea7661aSPierre Jolivet   Input Parameters:
3770fe59aa6dSJacob Faibussowitsch + A   - the `Mat` object
37716947451fSStefano Zampini - col - the column index
37726947451fSStefano Zampini 
37736947451fSStefano Zampini   Output Parameter:
37746947451fSStefano Zampini . v - the vector
37756947451fSStefano Zampini 
37762ef1f0ffSBarry Smith   Level: intermediate
37772ef1f0ffSBarry Smith 
37786947451fSStefano Zampini   Notes:
37796947451fSStefano Zampini   The vector is owned by PETSc and users cannot modify it.
378011a5261eSBarry Smith 
37812ef1f0ffSBarry Smith   Users need to call `MatDenseRestoreColumnVecRead()` when the vector is no longer needed.
378211a5261eSBarry Smith 
37832ef1f0ffSBarry Smith   Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecWrite()` for write-only access.
37846947451fSStefano Zampini 
37851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`
37866947451fSStefano Zampini @*/
3787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead(Mat A, PetscInt col, Vec *v)
3788d71ae5a4SJacob Faibussowitsch {
37896947451fSStefano Zampini   PetscFunctionBegin;
37906947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
37916947451fSStefano Zampini   PetscValidType(A, 1);
37926947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
37934f572ea9SToby Isaac   PetscAssertPointer(v, 3);
379428b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
37952cf15c64SPierre Jolivet   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3796cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v));
37973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37986947451fSStefano Zampini }
37996947451fSStefano Zampini 
38000f74d2c1SSatish Balay /*@
3801fb850c59SBarry Smith   MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVecRead()`.
38026947451fSStefano Zampini 
38036947451fSStefano Zampini   Collective
38046947451fSStefano Zampini 
38055ea7661aSPierre Jolivet   Input Parameters:
3806fe59aa6dSJacob Faibussowitsch + A   - the `Mat` object
38076947451fSStefano Zampini . col - the column index
3808fb850c59SBarry Smith - v   - the `Vec` object (may be `NULL`)
38096947451fSStefano Zampini 
38106947451fSStefano Zampini   Level: intermediate
38116947451fSStefano Zampini 
38121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecWrite()`
38136947451fSStefano Zampini @*/
3814d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead(Mat A, PetscInt col, Vec *v)
3815d71ae5a4SJacob Faibussowitsch {
38166947451fSStefano Zampini   PetscFunctionBegin;
38176947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
38186947451fSStefano Zampini   PetscValidType(A, 1);
38196947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
382008401ef6SPierre Jolivet   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
38212cf15c64SPierre Jolivet   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3822cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v));
38233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38246947451fSStefano Zampini }
38256947451fSStefano Zampini 
38260f74d2c1SSatish Balay /*@
3827fb850c59SBarry Smith   MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a `Vec`.
38286947451fSStefano Zampini 
38296947451fSStefano Zampini   Collective
38306947451fSStefano Zampini 
38315ea7661aSPierre Jolivet   Input Parameters:
3832fe59aa6dSJacob Faibussowitsch + A   - the `Mat` object
38336947451fSStefano Zampini - col - the column index
38346947451fSStefano Zampini 
38356947451fSStefano Zampini   Output Parameter:
38366947451fSStefano Zampini . v - the vector
38376947451fSStefano Zampini 
38386947451fSStefano Zampini   Level: intermediate
38396947451fSStefano Zampini 
38402ef1f0ffSBarry Smith   Notes:
38412ef1f0ffSBarry Smith   The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVecWrite()` when the vector is no longer needed.
38422ef1f0ffSBarry Smith 
38432ef1f0ffSBarry Smith   Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecRead()` for read-only access.
38442ef1f0ffSBarry Smith 
38451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`
38466947451fSStefano Zampini @*/
3847d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite(Mat A, PetscInt col, Vec *v)
3848d71ae5a4SJacob Faibussowitsch {
38496947451fSStefano Zampini   PetscFunctionBegin;
38506947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
38516947451fSStefano Zampini   PetscValidType(A, 1);
38526947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
38534f572ea9SToby Isaac   PetscAssertPointer(v, 3);
385428b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
3855aed4548fSBarry Smith   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3856cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseGetColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v));
38573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38586947451fSStefano Zampini }
38596947451fSStefano Zampini 
38600f74d2c1SSatish Balay /*@
3861fb850c59SBarry Smith   MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVecWrite()`.
38626947451fSStefano Zampini 
38636947451fSStefano Zampini   Collective
38646947451fSStefano Zampini 
38655ea7661aSPierre Jolivet   Input Parameters:
3866fe59aa6dSJacob Faibussowitsch + A   - the `Mat` object
38676947451fSStefano Zampini . col - the column index
38682ef1f0ffSBarry Smith - v   - the `Vec` object (may be `NULL`)
38696947451fSStefano Zampini 
38706947451fSStefano Zampini   Level: intermediate
38716947451fSStefano Zampini 
38721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`
38736947451fSStefano Zampini @*/
3874d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A, PetscInt col, Vec *v)
3875d71ae5a4SJacob Faibussowitsch {
38766947451fSStefano Zampini   PetscFunctionBegin;
38776947451fSStefano Zampini   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
38786947451fSStefano Zampini   PetscValidType(A, 1);
38796947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A, col, 2);
388008401ef6SPierre Jolivet   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
3881aed4548fSBarry Smith   PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N);
3882cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v));
38833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38846947451fSStefano Zampini }
38855ea7661aSPierre Jolivet 
38860f74d2c1SSatish Balay /*@
3887fb850c59SBarry Smith   MatDenseGetSubMatrix - Gives access to a block of rows and columns of a dense matrix, represented as a `Mat`.
38885ea7661aSPierre Jolivet 
38895ea7661aSPierre Jolivet   Collective
38905ea7661aSPierre Jolivet 
38915ea7661aSPierre Jolivet   Input Parameters:
3892fb850c59SBarry Smith + A      - the `Mat` object
38932ef1f0ffSBarry Smith . rbegin - the first global row index in the block (if `PETSC_DECIDE`, is 0)
38942ef1f0ffSBarry Smith . rend   - the global row index past the last one in the block (if `PETSC_DECIDE`, is `M`)
38952ef1f0ffSBarry Smith . cbegin - the first global column index in the block (if `PETSC_DECIDE`, is 0)
38962ef1f0ffSBarry Smith - cend   - the global column index past the last one in the block (if `PETSC_DECIDE`, is `N`)
38975ea7661aSPierre Jolivet 
38985ea7661aSPierre Jolivet   Output Parameter:
38995ea7661aSPierre Jolivet . v - the matrix
39005ea7661aSPierre Jolivet 
39015ea7661aSPierre Jolivet   Level: intermediate
39025ea7661aSPierre Jolivet 
39032ef1f0ffSBarry Smith   Notes:
39042ef1f0ffSBarry Smith   The matrix is owned by PETSc. Users need to call `MatDenseRestoreSubMatrix()` when the matrix is no longer needed.
39052ef1f0ffSBarry Smith 
39062ef1f0ffSBarry Smith   The output matrix is not redistributed by PETSc, so depending on the values of `rbegin` and `rend`, some processes may have no local rows.
39072ef1f0ffSBarry Smith 
39081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreSubMatrix()`
39095ea7661aSPierre Jolivet @*/
3910d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v)
3911d71ae5a4SJacob Faibussowitsch {
39125ea7661aSPierre Jolivet   PetscFunctionBegin;
39135ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
39145ea7661aSPierre Jolivet   PetscValidType(A, 1);
3915a2748737SPierre Jolivet   PetscValidLogicalCollectiveInt(A, rbegin, 2);
3916a2748737SPierre Jolivet   PetscValidLogicalCollectiveInt(A, rend, 3);
3917a2748737SPierre Jolivet   PetscValidLogicalCollectiveInt(A, cbegin, 4);
3918a2748737SPierre Jolivet   PetscValidLogicalCollectiveInt(A, cend, 5);
39194f572ea9SToby Isaac   PetscAssertPointer(v, 6);
3920a2748737SPierre Jolivet   if (rbegin == PETSC_DECIDE) rbegin = 0;
3921a2748737SPierre Jolivet   if (rend == PETSC_DECIDE) rend = A->rmap->N;
3922a2748737SPierre Jolivet   if (cbegin == PETSC_DECIDE) cbegin = 0;
3923a2748737SPierre Jolivet   if (cend == PETSC_DECIDE) cend = A->cmap->N;
392428b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated");
3925a2748737SPierre Jolivet   PetscCheck(rbegin >= 0 && rbegin <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", rbegin, A->rmap->N);
3926a2748737SPierre Jolivet   PetscCheck(rend >= rbegin && rend <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", rend, rbegin, A->rmap->N);
3927a2748737SPierre Jolivet   PetscCheck(cbegin >= 0 && cbegin <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", cbegin, A->cmap->N);
3928a2748737SPierre Jolivet   PetscCheck(cend >= cbegin && cend <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", cend, cbegin, A->cmap->N);
3929a2748737SPierre Jolivet   PetscUseMethod(A, "MatDenseGetSubMatrix_C", (Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *), (A, rbegin, rend, cbegin, cend, v));
39303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39315ea7661aSPierre Jolivet }
39325ea7661aSPierre Jolivet 
39330f74d2c1SSatish Balay /*@
3934fb850c59SBarry Smith   MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from `MatDenseGetSubMatrix()`.
39355ea7661aSPierre Jolivet 
39365ea7661aSPierre Jolivet   Collective
39375ea7661aSPierre Jolivet 
39385ea7661aSPierre Jolivet   Input Parameters:
3939fe59aa6dSJacob Faibussowitsch + A - the `Mat` object
39402ef1f0ffSBarry Smith - v - the `Mat` object (may be `NULL`)
39415ea7661aSPierre Jolivet 
39425ea7661aSPierre Jolivet   Level: intermediate
39435ea7661aSPierre Jolivet 
39441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseGetSubMatrix()`
39455ea7661aSPierre Jolivet @*/
3946d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix(Mat A, Mat *v)
3947d71ae5a4SJacob Faibussowitsch {
39485ea7661aSPierre Jolivet   PetscFunctionBegin;
39495ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
39505ea7661aSPierre Jolivet   PetscValidType(A, 1);
39514f572ea9SToby Isaac   PetscAssertPointer(v, 2);
3952cac4c232SBarry Smith   PetscUseMethod(A, "MatDenseRestoreSubMatrix_C", (Mat, Mat *), (A, v));
39533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39545ea7661aSPierre Jolivet }
39558a9c020eSBarry Smith 
39568a9c020eSBarry Smith #include <petscblaslapack.h>
39578a9c020eSBarry Smith #include <petsc/private/kernels/blockinvert.h>
39588a9c020eSBarry Smith 
3959d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvert(Mat A)
3960d71ae5a4SJacob Faibussowitsch {
3961d63b1753SJacob Faibussowitsch   PetscInt        m;
39628a9c020eSBarry Smith   const PetscReal shift = 0.0;
3963d63b1753SJacob Faibussowitsch   PetscBool       allowzeropivot, zeropivotdetected = PETSC_FALSE;
3964d63b1753SJacob Faibussowitsch   PetscScalar    *values;
39658a9c020eSBarry Smith 
39668a9c020eSBarry Smith   PetscFunctionBegin;
3967d63b1753SJacob Faibussowitsch   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3968d63b1753SJacob Faibussowitsch   PetscCall(MatDenseGetArray(A, &values));
3969d63b1753SJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, NULL));
3970d63b1753SJacob Faibussowitsch   allowzeropivot = PetscNot(A->erroriffailure);
39718a9c020eSBarry Smith   /* factor and invert each block */
3972d63b1753SJacob Faibussowitsch   switch (m) {
3973d71ae5a4SJacob Faibussowitsch   case 1:
3974d71ae5a4SJacob Faibussowitsch     values[0] = (PetscScalar)1.0 / (values[0] + shift);
3975d71ae5a4SJacob Faibussowitsch     break;
39768a9c020eSBarry Smith   case 2:
39778a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_2(values, shift, allowzeropivot, &zeropivotdetected));
39788a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
39798a9c020eSBarry Smith     break;
39808a9c020eSBarry Smith   case 3:
39818a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_3(values, shift, allowzeropivot, &zeropivotdetected));
39828a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
39838a9c020eSBarry Smith     break;
39848a9c020eSBarry Smith   case 4:
39858a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_4(values, shift, allowzeropivot, &zeropivotdetected));
39868a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
39878a9c020eSBarry Smith     break;
39889371c9d4SSatish Balay   case 5: {
39898a9c020eSBarry Smith     PetscScalar work[25];
39908a9c020eSBarry Smith     PetscInt    ipvt[5];
39918a9c020eSBarry Smith 
39928a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_5(values, ipvt, work, shift, allowzeropivot, &zeropivotdetected));
39938a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
39949371c9d4SSatish Balay   } break;
39958a9c020eSBarry Smith   case 6:
39968a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_6(values, shift, allowzeropivot, &zeropivotdetected));
39978a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
39988a9c020eSBarry Smith     break;
39998a9c020eSBarry Smith   case 7:
40008a9c020eSBarry Smith     PetscCall(PetscKernel_A_gets_inverse_A_7(values, shift, allowzeropivot, &zeropivotdetected));
40018a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
40028a9c020eSBarry Smith     break;
40039371c9d4SSatish Balay   default: {
40048a9c020eSBarry Smith     PetscInt    *v_pivots, *IJ, j;
40058a9c020eSBarry Smith     PetscScalar *v_work;
40068a9c020eSBarry Smith 
4007d63b1753SJacob Faibussowitsch     PetscCall(PetscMalloc3(m, &v_work, m, &v_pivots, m, &IJ));
4008d63b1753SJacob Faibussowitsch     for (j = 0; j < m; j++) IJ[j] = j;
4009d63b1753SJacob Faibussowitsch     PetscCall(PetscKernel_A_gets_inverse_A(m, values, v_pivots, v_work, allowzeropivot, &zeropivotdetected));
40108a9c020eSBarry Smith     if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
40118a9c020eSBarry Smith     PetscCall(PetscFree3(v_work, v_pivots, IJ));
40128a9c020eSBarry Smith   }
40138a9c020eSBarry Smith   }
4014d63b1753SJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A, &values));
40153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40168a9c020eSBarry Smith }
4017