167e560aaSBarry Smith /* 267e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 347d993e7Ssuyashtn Portions of this code are under: 447d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 7dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 8cd3f9d89SJunchao Zhang #include <../src/mat/impls/dense/mpi/mpidense.h> 9c6db04a5SJed Brown #include <petscblaslapack.h> 106a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> 114186a4bbSPierre Jolivet #include <petsc/private/vecimpl.h> 12b2573a8aSBarry Smith 13d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian) 14d71ae5a4SJacob Faibussowitsch { 158c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 168c178816SStefano Zampini PetscInt j, k, n = A->rmap->n; 17ca15aa20SStefano Zampini PetscScalar *v; 188c178816SStefano Zampini 198c178816SStefano Zampini PetscFunctionBegin; 2008401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot symmetrize a rectangular matrix"); 219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 228c178816SStefano Zampini if (!hermitian) { 238c178816SStefano Zampini for (k = 0; k < n; k++) { 24ad540459SPierre Jolivet for (j = k; j < n; j++) v[j * mat->lda + k] = v[k * mat->lda + j]; 258c178816SStefano Zampini } 268c178816SStefano Zampini } else { 278c178816SStefano Zampini for (k = 0; k < n; k++) { 28ad540459SPierre Jolivet for (j = k; j < n; j++) v[j * mat->lda + k] = PetscConj(v[k * mat->lda + j]); 298c178816SStefano Zampini } 308c178816SStefano Zampini } 319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 338c178816SStefano Zampini } 348c178816SStefano Zampini 35ff6a9541SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A) 36d71ae5a4SJacob Faibussowitsch { 378c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 388c178816SStefano Zampini PetscBLASInt info, n; 398c178816SStefano Zampini 408c178816SStefano Zampini PetscFunctionBegin; 413ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 429566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 438c178816SStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 4428b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 458c178816SStefano Zampini if (!mat->fwork) { 468c178816SStefano Zampini mat->lfwork = n; 479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 488c178816SStefano Zampini } 499566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 50792fecdfSBarry Smith PetscCallBLAS("LAPACKgetri", LAPACKgetri_(&n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 519566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 529566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 538c178816SStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 54b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 559566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 56792fecdfSBarry Smith PetscCallBLAS("LAPACKpotri", LAPACKpotri_("L", &n, mat->v, &mat->lda, &info)); 579566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 589566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE)); 598c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX) 60b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 6128b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 6228b400f6SJacob Faibussowitsch PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present"); 639566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 64792fecdfSBarry Smith PetscCallBLAS("LAPACKhetri", LAPACKhetri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info)); 659566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 669566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_TRUE)); 678c178816SStefano Zampini #endif 688c178816SStefano Zampini } else { /* symmetric case */ 6928b400f6SJacob Faibussowitsch PetscCheck(mat->pivots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Pivots not present"); 7028b400f6SJacob Faibussowitsch PetscCheck(mat->fwork, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Fwork not present"); 719566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 72792fecdfSBarry Smith PetscCallBLAS("LAPACKsytri", LAPACKsytri_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &info)); 739566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 749566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSymmetrize_Private(A, PETSC_FALSE)); 758c178816SStefano Zampini } 76835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad Inversion: zero pivot in row %" PetscBLASInt_FMT, info - 1); 779566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 788c178816SStefano Zampini } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix must be factored to solve"); 798c178816SStefano Zampini 808c178816SStefano Zampini A->ops->solve = NULL; 818c178816SStefano Zampini A->ops->matsolve = NULL; 828c178816SStefano Zampini A->ops->solvetranspose = NULL; 838c178816SStefano Zampini A->ops->matsolvetranspose = NULL; 848c178816SStefano Zampini A->ops->solveadd = NULL; 858c178816SStefano Zampini A->ops->solvetransposeadd = NULL; 868c178816SStefano Zampini A->factortype = MAT_FACTOR_NONE; 879566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 898c178816SStefano Zampini } 908c178816SStefano Zampini 9166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 92d71ae5a4SJacob Faibussowitsch { 933f49a652SStefano Zampini Mat_SeqDense *l = (Mat_SeqDense *)A->data; 943f49a652SStefano Zampini PetscInt m = l->lda, n = A->cmap->n, r = A->rmap->n, i, j; 95ca15aa20SStefano Zampini PetscScalar *slot, *bb, *v; 963f49a652SStefano Zampini const PetscScalar *xx; 973f49a652SStefano Zampini 983f49a652SStefano Zampini PetscFunctionBegin; 9976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1003f49a652SStefano Zampini for (i = 0; i < N; i++) { 10108401ef6SPierre Jolivet PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed"); 10208401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n); 10308401ef6SPierre Jolivet PetscCheck(rows[i] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col %" PetscInt_FMT " requested to be zeroed greater than or equal number of cols %" PetscInt_FMT, rows[i], A->cmap->n); 1043f49a652SStefano Zampini } 10576bd3646SJed Brown } 1063ba16761SJacob Faibussowitsch if (!N) PetscFunctionReturn(PETSC_SUCCESS); 1073f49a652SStefano Zampini 108dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 1093f49a652SStefano Zampini if (x && b) { 1106c4d906cSStefano Zampini Vec xt; 1116c4d906cSStefano Zampini 11208401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 1139566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &xt)); 1149566063dSJacob Faibussowitsch PetscCall(VecCopy(x, xt)); 1159566063dSJacob Faibussowitsch PetscCall(VecScale(xt, -1.0)); 1169566063dSJacob Faibussowitsch PetscCall(MatMultAdd(A, xt, b, b)); 1179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xt)); 1189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 1199566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 1203f49a652SStefano Zampini for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]]; 1219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 1229566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 1233f49a652SStefano Zampini } 1243f49a652SStefano Zampini 1259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1263f49a652SStefano Zampini for (i = 0; i < N; i++) { 127ca15aa20SStefano Zampini slot = v + rows[i] * m; 1289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(slot, r)); 1293f49a652SStefano Zampini } 1303f49a652SStefano Zampini for (i = 0; i < N; i++) { 131ca15aa20SStefano Zampini slot = v + rows[i]; 1329371c9d4SSatish Balay for (j = 0; j < n; j++) { 1339371c9d4SSatish Balay *slot = 0.0; 1349371c9d4SSatish Balay slot += m; 1359371c9d4SSatish Balay } 1363f49a652SStefano Zampini } 1373f49a652SStefano Zampini if (diag != 0.0) { 13808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 1393f49a652SStefano Zampini for (i = 0; i < N; i++) { 140ca15aa20SStefano Zampini slot = v + (m + 1) * rows[i]; 1413f49a652SStefano Zampini *slot = diag; 1423f49a652SStefano Zampini } 1433f49a652SStefano Zampini } 1449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 1453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1463f49a652SStefano Zampini } 1473f49a652SStefano Zampini 148d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 149d71ae5a4SJacob Faibussowitsch { 150a13144ffSStefano Zampini Mat B = NULL; 151b49cda9fSStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 152b49cda9fSStefano Zampini Mat_SeqDense *b; 153b49cda9fSStefano Zampini PetscInt *ai = a->i, *aj = a->j, m = A->rmap->N, n = A->cmap->N, i; 1542e5835c6SStefano Zampini const MatScalar *av; 155a13144ffSStefano Zampini PetscBool isseqdense; 156b49cda9fSStefano Zampini 157b49cda9fSStefano Zampini PetscFunctionBegin; 158a13144ffSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 1599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)*newmat, MATSEQDENSE, &isseqdense)); 160f4f49eeaSPierre Jolivet PetscCheck(isseqdense, PetscObjectComm((PetscObject)*newmat), PETSC_ERR_USER, "Cannot reuse matrix of type %s", ((PetscObject)*newmat)->type_name); 161a13144ffSStefano Zampini } 162a13144ffSStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 1639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n)); 1659566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQDENSE)); 1669566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, NULL)); 167f4f49eeaSPierre Jolivet b = (Mat_SeqDense *)B->data; 168a13144ffSStefano Zampini } else { 169a13144ffSStefano Zampini b = (Mat_SeqDense *)((*newmat)->data); 170e1ea5af7SJose E. Roman for (i = 0; i < n; i++) PetscCall(PetscArrayzero(b->v + i * b->lda, m)); 171a13144ffSStefano Zampini } 1729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &av)); 173b49cda9fSStefano Zampini for (i = 0; i < m; i++) { 174b49cda9fSStefano Zampini PetscInt j; 175b49cda9fSStefano Zampini for (j = 0; j < ai[1] - ai[0]; j++) { 176e1ea5af7SJose E. Roman b->v[*aj * b->lda + i] = *av; 177b49cda9fSStefano Zampini aj++; 178b49cda9fSStefano Zampini av++; 179b49cda9fSStefano Zampini } 180b49cda9fSStefano Zampini ai++; 181b49cda9fSStefano Zampini } 1829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &av)); 183b49cda9fSStefano Zampini 184511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 1859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1879566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 188b49cda9fSStefano Zampini } else { 189a13144ffSStefano Zampini if (B) *newmat = B; 1909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*newmat, MAT_FINAL_ASSEMBLY)); 1919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*newmat, MAT_FINAL_ASSEMBLY)); 192b49cda9fSStefano Zampini } 1933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 194b49cda9fSStefano Zampini } 195b49cda9fSStefano Zampini 196d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 197d71ae5a4SJacob Faibussowitsch { 1986d4ec7b0SPierre Jolivet Mat B = NULL; 1996a63e612SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2009399e1b8SMatthew G. Knepley PetscInt i, j; 2019399e1b8SMatthew G. Knepley PetscInt *rows, *nnz; 2029399e1b8SMatthew G. Knepley MatScalar *aa = a->v, *vals; 2036a63e612SBarry Smith 2046a63e612SBarry Smith PetscFunctionBegin; 2059566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(A->rmap->n, &rows, A->rmap->n, &nnz, A->rmap->n, &vals)); 2066d4ec7b0SPierre Jolivet if (reuse != MAT_REUSE_MATRIX) { 2079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 2099566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 2109399e1b8SMatthew G. Knepley for (j = 0; j < A->cmap->n; j++) { 2119371c9d4SSatish Balay for (i = 0; i < A->rmap->n; i++) 2129371c9d4SSatish Balay if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i]; 2136a63e612SBarry Smith aa += a->lda; 2146a63e612SBarry Smith } 2159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, PETSC_DETERMINE, nnz)); 2166d4ec7b0SPierre Jolivet } else B = *newmat; 2179399e1b8SMatthew G. Knepley aa = a->v; 2189399e1b8SMatthew G. Knepley for (j = 0; j < A->cmap->n; j++) { 2199399e1b8SMatthew G. Knepley PetscInt numRows = 0; 2209371c9d4SSatish Balay for (i = 0; i < A->rmap->n; i++) 2219371c9d4SSatish Balay if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) { 2229371c9d4SSatish Balay rows[numRows] = i; 2239371c9d4SSatish Balay vals[numRows++] = aa[i]; 2249371c9d4SSatish Balay } 2259566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, numRows, rows, 1, &j, vals, INSERT_VALUES)); 2269399e1b8SMatthew G. Knepley aa += a->lda; 2279399e1b8SMatthew G. Knepley } 2289566063dSJacob Faibussowitsch PetscCall(PetscFree3(rows, nnz, vals)); 2299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 2316a63e612SBarry Smith 232511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2339566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 2346d4ec7b0SPierre Jolivet } else if (reuse != MAT_REUSE_MATRIX) *newmat = B; 2353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2366a63e612SBarry Smith } 2376a63e612SBarry Smith 238d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_SeqDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 239d71ae5a4SJacob Faibussowitsch { 2401987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense *)X->data, *y = (Mat_SeqDense *)Y->data; 241ca15aa20SStefano Zampini const PetscScalar *xv; 242ca15aa20SStefano Zampini PetscScalar *yv; 24323fff9afSBarry Smith PetscBLASInt N, m, ldax = 0, lday = 0, one = 1; 2443a40ed3dSBarry Smith 2453a40ed3dSBarry Smith PetscFunctionBegin; 2469566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(X, &xv)); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(Y, &yv)); 2489566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n * X->cmap->n, &N)); 2499566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(X->rmap->n, &m)); 2509566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->lda, &ldax)); 2519566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(y->lda, &lday)); 252a5ce6ee0Svictorle if (ldax > m || lday > m) { 2538e3a54c0SPierre Jolivet for (PetscInt j = 0; j < X->cmap->n; j++) PetscCallBLAS("BLASaxpy", BLASaxpy_(&m, &alpha, PetscSafePointerPlusOffset(xv, j * ldax), &one, PetscSafePointerPlusOffset(yv, j * lday), &one)); 254a5ce6ee0Svictorle } else { 255792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&N, &alpha, xv, &one, yv, &one)); 256a5ce6ee0Svictorle } 2579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(X, &xv)); 2589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(Y, &yv)); 2599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(2.0 * N - 1, 0))); 2603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2611987afe7SBarry Smith } 2621987afe7SBarry Smith 263d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetInfo_SeqDense(Mat A, MatInfoType flag, MatInfo *info) 264d71ae5a4SJacob Faibussowitsch { 265ca15aa20SStefano Zampini PetscLogDouble N = A->rmap->n * A->cmap->n; 2663a40ed3dSBarry Smith 2673a40ed3dSBarry Smith PetscFunctionBegin; 2684e220ebcSLois Curfman McInnes info->block_size = 1.0; 269ca15aa20SStefano Zampini info->nz_allocated = N; 270ca15aa20SStefano Zampini info->nz_used = N; 271ca15aa20SStefano Zampini info->nz_unneeded = 0; 272ca15aa20SStefano Zampini info->assemblies = A->num_ass; 2734e220ebcSLois Curfman McInnes info->mallocs = 0; 2744dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 2754e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 2764e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 2774e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 2783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279289bc588SBarry Smith } 280289bc588SBarry Smith 281d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqDense(Mat A, PetscScalar alpha) 282d71ae5a4SJacob Faibussowitsch { 283273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 284ca15aa20SStefano Zampini PetscScalar *v; 28523fff9afSBarry Smith PetscBLASInt one = 1, j, nz, lda = 0; 28680cd9d93SLois Curfman McInnes 2873a40ed3dSBarry Smith PetscFunctionBegin; 2889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 2899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->lda, &lda)); 290d0f46423SBarry Smith if (lda > A->rmap->n) { 2919566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &nz)); 29248a46eb9SPierre Jolivet for (j = 0; j < A->cmap->n; j++) PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v + j * lda, &one)); 293a5ce6ee0Svictorle } else { 2949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n * A->cmap->n, &nz)); 295792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&nz, &alpha, v, &one)); 296a5ce6ee0Svictorle } 29704cbc005SJose E. Roman PetscCall(PetscLogFlops(A->rmap->n * A->cmap->n)); 2989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 2993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30080cd9d93SLois Curfman McInnes } 30180cd9d93SLois Curfman McInnes 302d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqDense(Mat A, PetscScalar alpha) 303d71ae5a4SJacob Faibussowitsch { 3042f605a99SJose E. Roman Mat_SeqDense *a = (Mat_SeqDense *)A->data; 3052f605a99SJose E. Roman PetscScalar *v; 3062f605a99SJose E. Roman PetscInt j, k; 3072f605a99SJose E. Roman 3082f605a99SJose E. Roman PetscFunctionBegin; 3092f605a99SJose E. Roman PetscCall(MatDenseGetArray(A, &v)); 3102f605a99SJose E. Roman k = PetscMin(A->rmap->n, A->cmap->n); 3112f605a99SJose E. Roman for (j = 0; j < k; j++) v[j + j * a->lda] += alpha; 3122f605a99SJose E. Roman PetscCall(PetscLogFlops(k)); 3132f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(A, &v)); 3143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3152f605a99SJose E. Roman } 3162f605a99SJose E. Roman 317d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsHermitian_SeqDense(Mat A, PetscReal rtol, PetscBool *fl) 318d71ae5a4SJacob Faibussowitsch { 3191cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 320ca15aa20SStefano Zampini PetscInt i, j, m = A->rmap->n, N = a->lda; 321ca15aa20SStefano Zampini const PetscScalar *v; 3221cbb95d3SBarry Smith 3231cbb95d3SBarry Smith PetscFunctionBegin; 3241cbb95d3SBarry Smith *fl = PETSC_FALSE; 3253ba16761SJacob Faibussowitsch if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 3271cbb95d3SBarry Smith for (i = 0; i < m; i++) { 328ca15aa20SStefano Zampini for (j = i; j < m; j++) { 329ad540459SPierre Jolivet if (PetscAbsScalar(v[i + j * N] - PetscConj(v[j + i * N])) > rtol) goto restore; 3301cbb95d3SBarry Smith } 331637a0070SStefano Zampini } 3321cbb95d3SBarry Smith *fl = PETSC_TRUE; 333637a0070SStefano Zampini restore: 3349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 3353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 336637a0070SStefano Zampini } 337637a0070SStefano Zampini 338d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_SeqDense(Mat A, PetscReal rtol, PetscBool *fl) 339d71ae5a4SJacob Faibussowitsch { 340637a0070SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 341637a0070SStefano Zampini PetscInt i, j, m = A->rmap->n, N = a->lda; 342637a0070SStefano Zampini const PetscScalar *v; 343637a0070SStefano Zampini 344637a0070SStefano Zampini PetscFunctionBegin; 345637a0070SStefano Zampini *fl = PETSC_FALSE; 3463ba16761SJacob Faibussowitsch if (A->rmap->n != A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 3479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 348637a0070SStefano Zampini for (i = 0; i < m; i++) { 349637a0070SStefano Zampini for (j = i; j < m; j++) { 350ad540459SPierre Jolivet if (PetscAbsScalar(v[i + j * N] - v[j + i * N]) > rtol) goto restore; 351637a0070SStefano Zampini } 352637a0070SStefano Zampini } 353637a0070SStefano Zampini *fl = PETSC_TRUE; 354637a0070SStefano Zampini restore: 3559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 3563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3571cbb95d3SBarry Smith } 3581cbb95d3SBarry Smith 359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi, Mat A, MatDuplicateOption cpvalues) 360d71ae5a4SJacob Faibussowitsch { 361ca15aa20SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 362835f2295SStefano Zampini PetscInt lda = mat->lda, j, m, nlda = lda; 36375f6d85dSStefano Zampini PetscBool isdensecpu; 364b24902e0SBarry Smith 365b24902e0SBarry Smith PetscFunctionBegin; 3669566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &newi->rmap)); 3679566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &newi->cmap)); 36823fc5dcaSStefano Zampini if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */ 3699566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(newi, lda)); 37023fc5dcaSStefano Zampini } 3719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)newi, MATSEQDENSE, &isdensecpu)); 3729566063dSJacob Faibussowitsch if (isdensecpu) PetscCall(MatSeqDenseSetPreallocation(newi, NULL)); 373b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 374ca15aa20SStefano Zampini const PetscScalar *av; 375ca15aa20SStefano Zampini PetscScalar *v; 376ca15aa20SStefano Zampini 3779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 3789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(newi, &v)); 3799566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newi, &nlda)); 380d0f46423SBarry Smith m = A->rmap->n; 38123fc5dcaSStefano Zampini if (lda > m || nlda > m) { 3828e3a54c0SPierre Jolivet for (j = 0; j < A->cmap->n; j++) PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(v, j * nlda), PetscSafePointerPlusOffset(av, j * lda), m)); 383b24902e0SBarry Smith } else { 3849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, av, A->rmap->n * A->cmap->n)); 385b24902e0SBarry Smith } 3869566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(newi, &v)); 3879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 388c956ced0SPierre Jolivet PetscCall(MatPropagateSymmetryOptions(A, newi)); 389b24902e0SBarry Smith } 3903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 391b24902e0SBarry Smith } 392b24902e0SBarry Smith 393d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 394d71ae5a4SJacob Faibussowitsch { 3953a40ed3dSBarry Smith PetscFunctionBegin; 3969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), newmat)); 3979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*newmat, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 3989566063dSJacob Faibussowitsch PetscCall(MatSetType(*newmat, ((PetscObject)A)->type_name)); 3999566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(*newmat, A, cpvalues)); 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401b24902e0SBarry Smith } 402b24902e0SBarry Smith 403d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 404d71ae5a4SJacob Faibussowitsch { 405c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4064396437dSToby Isaac PetscBLASInt info; 40767e560aaSBarry Smith 4083a40ed3dSBarry Smith PetscFunctionBegin; 4099566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 410792fecdfSBarry Smith PetscCallBLAS("LAPACKgetrs", LAPACKgetrs_(T ? "T" : "N", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4119566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 412835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "GETRS - Bad solve %" PetscBLASInt_FMT, info); 4139566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m))); 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4154396437dSToby Isaac } 4164396437dSToby Isaac 4174396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat); 4184396437dSToby Isaac 419d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T) 420d71ae5a4SJacob Faibussowitsch { 4214396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4224396437dSToby Isaac PetscBLASInt info; 4234396437dSToby Isaac 4244396437dSToby Isaac PetscFunctionBegin; 425b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 4269566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 4279566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 428792fecdfSBarry Smith PetscCallBLAS("LAPACKpotrs", LAPACKpotrs_("L", &m, &nrhs, mat->v, &mat->lda, x, &m, &info)); 4299566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 430835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "POTRS Bad solve %" PetscBLASInt_FMT, info); 4319566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A)); 432a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 433b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 4349566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 4359566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 436792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrs", LAPACKhetrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4379566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 438835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "HETRS Bad solve %" PetscBLASInt_FMT, info); 4399566063dSJacob Faibussowitsch if (T) PetscCall(MatConjugate_SeqDense(A)); 440a49dc2a2SStefano Zampini #endif 441a49dc2a2SStefano Zampini } else { /* symmetric case */ 4429566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 443792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrs", LAPACKsytrs_("L", &m, &nrhs, mat->v, &mat->lda, mat->pivots, x, &m, &info)); 4449566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 445835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "SYTRS Bad solve %" PetscBLASInt_FMT, info); 446a49dc2a2SStefano Zampini } 4479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (2.0 * m * m - m))); 4483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4494396437dSToby Isaac } 45085e2c93fSHong Zhang 451d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 452d71ae5a4SJacob Faibussowitsch { 4534396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4544396437dSToby Isaac PetscBLASInt info; 4554396437dSToby Isaac char trans; 4564396437dSToby Isaac 4574396437dSToby Isaac PetscFunctionBegin; 4584905a7bcSToby Isaac if (PetscDefined(USE_COMPLEX)) { 4594905a7bcSToby Isaac trans = 'C'; 4604905a7bcSToby Isaac } else { 4614905a7bcSToby Isaac trans = 'T'; 4624905a7bcSToby Isaac } 4639566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 46405fcb23eSStefano Zampini { /* lwork depends on the number of right-hand sides */ 46505fcb23eSStefano Zampini PetscBLASInt nlfwork, lfwork = -1; 46605fcb23eSStefano Zampini PetscScalar fwork; 46705fcb23eSStefano Zampini 468792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info)); 46905fcb23eSStefano Zampini nlfwork = (PetscBLASInt)PetscRealPart(fwork); 47005fcb23eSStefano Zampini if (nlfwork > mat->lfwork) { 47105fcb23eSStefano Zampini mat->lfwork = nlfwork; 47205fcb23eSStefano Zampini PetscCall(PetscFree(mat->fwork)); 47305fcb23eSStefano Zampini PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 47405fcb23eSStefano Zampini } 47505fcb23eSStefano Zampini } 476792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", &trans, &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info)); 4779566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 478835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %" PetscBLASInt_FMT, info); 4799566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 480792fecdfSBarry Smith PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "N", "N", &mat->rank, &nrhs, mat->v, &mat->lda, x, &ldx, &info)); 4819566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 482835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %" PetscBLASInt_FMT, info); 4834905a7bcSToby Isaac for (PetscInt j = 0; j < nrhs; j++) { 484ad540459SPierre Jolivet for (PetscInt i = mat->rank; i < k; i++) x[j * ldx + i] = 0.; 4854905a7bcSToby Isaac } 4869566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank)))); 4873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4884905a7bcSToby Isaac } 4894905a7bcSToby Isaac 490d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k) 491d71ae5a4SJacob Faibussowitsch { 4924396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 4934396437dSToby Isaac PetscBLASInt info; 4944396437dSToby Isaac 4954396437dSToby Isaac PetscFunctionBegin; 4964396437dSToby Isaac if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) { 4979566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 498792fecdfSBarry Smith PetscCallBLAS("LAPACKtrtrs", LAPACKtrtrs_("U", "T", "N", &m, &nrhs, mat->v, &mat->lda, x, &ldx, &info)); 4999566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 500835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "TRTRS - Bad triangular solve %" PetscBLASInt_FMT, info); 5019566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 50205fcb23eSStefano Zampini { /* lwork depends on the number of right-hand sides */ 50305fcb23eSStefano Zampini PetscBLASInt nlfwork, lfwork = -1; 50405fcb23eSStefano Zampini PetscScalar fwork; 50505fcb23eSStefano Zampini 506792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, &fwork, &lfwork, &info)); 50705fcb23eSStefano Zampini nlfwork = (PetscBLASInt)PetscRealPart(fwork); 50805fcb23eSStefano Zampini if (nlfwork > mat->lfwork) { 50905fcb23eSStefano Zampini mat->lfwork = nlfwork; 51005fcb23eSStefano Zampini PetscCall(PetscFree(mat->fwork)); 51105fcb23eSStefano Zampini PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 51205fcb23eSStefano Zampini } 51305fcb23eSStefano Zampini } 5149566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 515792fecdfSBarry Smith PetscCallBLAS("LAPACKormqr", LAPACKormqr_("L", "N", &m, &nrhs, &mat->rank, mat->v, &mat->lda, mat->tau, x, &ldx, mat->fwork, &mat->lfwork, &info)); 5169566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 517835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "ORMQR - Bad orthogonal transform %" PetscBLASInt_FMT, info); 5189566063dSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A)); 5194396437dSToby Isaac } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "QR factored matrix cannot be used for transpose solve"); 5209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nrhs * (4.0 * m * mat->rank - PetscSqr(mat->rank)))); 5213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5224396437dSToby Isaac } 5234396437dSToby Isaac 524d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 525d71ae5a4SJacob Faibussowitsch { 5264396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 5274905a7bcSToby Isaac PetscScalar *y; 5284905a7bcSToby Isaac PetscBLASInt m = 0, k = 0; 5294905a7bcSToby Isaac 5304905a7bcSToby Isaac PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 5329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 5334905a7bcSToby Isaac if (k < m) { 5349566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, mat->qrrhs)); 5359566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->qrrhs, &y)); 5364905a7bcSToby Isaac } else { 5379566063dSJacob Faibussowitsch PetscCall(VecCopy(xx, yy)); 5389566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 5394905a7bcSToby Isaac } 5404396437dSToby Isaac *_y = y; 5414396437dSToby Isaac *_k = k; 5424396437dSToby Isaac *_m = m; 5433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5444396437dSToby Isaac } 5454396437dSToby Isaac 546d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k) 547d71ae5a4SJacob Faibussowitsch { 5484396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 54942e9364cSSatish Balay PetscScalar *y = NULL; 5504396437dSToby Isaac PetscBLASInt m, k; 5514396437dSToby Isaac 5524396437dSToby Isaac PetscFunctionBegin; 5534396437dSToby Isaac y = *_y; 5544396437dSToby Isaac *_y = NULL; 5554396437dSToby Isaac k = *_k; 5564396437dSToby Isaac m = *_m; 5574905a7bcSToby Isaac if (k < m) { 5584905a7bcSToby Isaac PetscScalar *yv; 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &yv)); 5609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(yv, y, k)); 5619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &yv)); 5629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->qrrhs, &y)); 5634905a7bcSToby Isaac } else { 5649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 5654905a7bcSToby Isaac } 5663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5674905a7bcSToby Isaac } 5684905a7bcSToby Isaac 569d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy) 570d71ae5a4SJacob Faibussowitsch { 57142e9364cSSatish Balay PetscScalar *y = NULL; 57242e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 5734396437dSToby Isaac 5744396437dSToby Isaac PetscFunctionBegin; 5759566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 5769566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE)); 5779566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 5783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5794396437dSToby Isaac } 5804396437dSToby Isaac 581d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy) 582d71ae5a4SJacob Faibussowitsch { 58342e9364cSSatish Balay PetscScalar *y = NULL; 58442e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 5854396437dSToby Isaac 5864396437dSToby Isaac PetscFunctionBegin; 5879566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 5889566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE)); 5899566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5914396437dSToby Isaac } 5924396437dSToby Isaac 593d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 594d71ae5a4SJacob Faibussowitsch { 595e54beecaSStefano Zampini PetscScalar *y = NULL; 596e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 5974396437dSToby Isaac 5984396437dSToby Isaac PetscFunctionBegin; 5999566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6009566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE)); 6019566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6034396437dSToby Isaac } 6044396437dSToby Isaac 605d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy) 606d71ae5a4SJacob Faibussowitsch { 607e54beecaSStefano Zampini PetscScalar *y = NULL; 608e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6094396437dSToby Isaac 6104396437dSToby Isaac PetscFunctionBegin; 6119566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6129566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE)); 6139566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6154396437dSToby Isaac } 6164396437dSToby Isaac 617d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy) 618d71ae5a4SJacob Faibussowitsch { 619e54beecaSStefano Zampini PetscScalar *y = NULL; 620e54beecaSStefano Zampini PetscBLASInt m = 0, k = 0; 6214396437dSToby Isaac 6224396437dSToby Isaac PetscFunctionBegin; 6239566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6249566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k)); 6259566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6274396437dSToby Isaac } 6284396437dSToby Isaac 629d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy) 630d71ae5a4SJacob Faibussowitsch { 63142e9364cSSatish Balay PetscScalar *y = NULL; 63242e9364cSSatish Balay PetscBLASInt m = 0, k = 0; 6334396437dSToby Isaac 6344396437dSToby Isaac PetscFunctionBegin; 6359566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k)); 6369566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m, k), m, 1, k)); 6379566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k)); 6383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6394396437dSToby Isaac } 6404396437dSToby Isaac 641d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 642d71ae5a4SJacob Faibussowitsch { 6434905a7bcSToby Isaac const PetscScalar *b; 6444396437dSToby Isaac PetscScalar *y; 645bf5a80bcSToby Isaac PetscInt n, _ldb, _ldx; 646bf5a80bcSToby Isaac PetscBLASInt nrhs = 0, m = 0, k = 0, ldb = 0, ldx = 0, ldy = 0; 6474905a7bcSToby Isaac 6484905a7bcSToby Isaac PetscFunctionBegin; 6499371c9d4SSatish Balay *_ldy = 0; 6509371c9d4SSatish Balay *_m = 0; 6519371c9d4SSatish Balay *_nrhs = 0; 6529371c9d4SSatish Balay *_k = 0; 6539371c9d4SSatish Balay *_y = NULL; 6549566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 6559566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 6569566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, NULL, &n)); 6579566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(n, &nrhs)); 6589566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &_ldb)); 6599566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldb, &ldb)); 6609566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X, &_ldx)); 6619566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 662bf5a80bcSToby Isaac if (ldx < m) { 6639566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 6649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrhs * m, &y)); 665bf5a80bcSToby Isaac if (ldb == m) { 6669566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(y, b, ldb * nrhs)); 6674905a7bcSToby Isaac } else { 66848a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * m], &b[j * ldb], m)); 6694905a7bcSToby Isaac } 670bf5a80bcSToby Isaac ldy = m; 6719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 6724905a7bcSToby Isaac } else { 673bf5a80bcSToby Isaac if (ldb == ldx) { 6749566063dSJacob Faibussowitsch PetscCall(MatCopy(B, X, SAME_NONZERO_PATTERN)); 6759566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &y)); 6764905a7bcSToby Isaac } else { 6779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &y)); 6789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 67948a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&y[j * ldx], &b[j * ldb], m)); 6809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 6814905a7bcSToby Isaac } 682bf5a80bcSToby Isaac ldy = ldx; 6834905a7bcSToby Isaac } 6844396437dSToby Isaac *_y = y; 685bf5a80bcSToby Isaac *_ldy = ldy; 6864396437dSToby Isaac *_k = k; 6874396437dSToby Isaac *_m = m; 6884396437dSToby Isaac *_nrhs = nrhs; 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6904396437dSToby Isaac } 6914396437dSToby Isaac 692d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k) 693d71ae5a4SJacob Faibussowitsch { 6944396437dSToby Isaac PetscScalar *y; 695bf5a80bcSToby Isaac PetscInt _ldx; 696bf5a80bcSToby Isaac PetscBLASInt k, ldy, nrhs, ldx = 0; 6974396437dSToby Isaac 6984396437dSToby Isaac PetscFunctionBegin; 6994396437dSToby Isaac y = *_y; 7004396437dSToby Isaac *_y = NULL; 7014396437dSToby Isaac k = *_k; 702bf5a80bcSToby Isaac ldy = *_ldy; 7034396437dSToby Isaac nrhs = *_nrhs; 7049566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(X, &_ldx)); 7059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(_ldx, &ldx)); 706bf5a80bcSToby Isaac if (ldx != ldy) { 7074905a7bcSToby Isaac PetscScalar *xv; 7089566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(X, &xv)); 70948a46eb9SPierre Jolivet for (PetscInt j = 0; j < nrhs; j++) PetscCall(PetscArraycpy(&xv[j * ldx], &y[j * ldy], k)); 7109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X, &xv)); 7119566063dSJacob Faibussowitsch PetscCall(PetscFree(y)); 7124905a7bcSToby Isaac } else { 7139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(X, &y)); 7144905a7bcSToby Isaac } 7153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71685e2c93fSHong Zhang } 71785e2c93fSHong Zhang 718d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X) 719d71ae5a4SJacob Faibussowitsch { 7204396437dSToby Isaac PetscScalar *y; 721bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7224396437dSToby Isaac 7234396437dSToby Isaac PetscFunctionBegin; 7249566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7259566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7269566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7284396437dSToby Isaac } 7294396437dSToby Isaac 730d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X) 731d71ae5a4SJacob Faibussowitsch { 7324396437dSToby Isaac PetscScalar *y; 733bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7344396437dSToby Isaac 7354396437dSToby Isaac PetscFunctionBegin; 7369566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7379566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 7389566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7404396437dSToby Isaac } 7414396437dSToby Isaac 742d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X) 743d71ae5a4SJacob Faibussowitsch { 7444396437dSToby Isaac PetscScalar *y; 745bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7464396437dSToby Isaac 7474396437dSToby Isaac PetscFunctionBegin; 7489566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7499566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_FALSE)); 7509566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7524396437dSToby Isaac } 7534396437dSToby Isaac 754d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X) 755d71ae5a4SJacob Faibussowitsch { 7564396437dSToby Isaac PetscScalar *y; 757bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7584396437dSToby Isaac 7594396437dSToby Isaac PetscFunctionBegin; 7609566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7619566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_TRUE)); 7629566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7644396437dSToby Isaac } 7654396437dSToby Isaac 766d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X) 767d71ae5a4SJacob Faibussowitsch { 7684396437dSToby Isaac PetscScalar *y; 769bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7704396437dSToby Isaac 7714396437dSToby Isaac PetscFunctionBegin; 7729566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7739566063dSJacob Faibussowitsch PetscCall(MatSolve_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 7749566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7764396437dSToby Isaac } 7774396437dSToby Isaac 778d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X) 779d71ae5a4SJacob Faibussowitsch { 7804396437dSToby Isaac PetscScalar *y; 781bf5a80bcSToby Isaac PetscBLASInt m, k, ldy, nrhs; 7824396437dSToby Isaac 7834396437dSToby Isaac PetscFunctionBegin; 7849566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7859566063dSJacob Faibussowitsch PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k)); 7869566063dSJacob Faibussowitsch PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k)); 7873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7884396437dSToby Isaac } 7894396437dSToby Isaac 790db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 791db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 792d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactor_SeqDense(Mat A, IS row, IS col, const MatFactorInfo *minfo) 793d71ae5a4SJacob Faibussowitsch { 794db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 795db4efbfdSBarry Smith PetscBLASInt n, m, info; 796db4efbfdSBarry Smith 797db4efbfdSBarry Smith PetscFunctionBegin; 7989566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 7999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 8004dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 8013ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 8029566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 803792fecdfSBarry Smith PetscCallBLAS("LAPACKgetrf", LAPACKgetrf_(&m, &n, mat->v, &mat->lda, mat->pivots, &info)); 8049566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 8058e57ea43SSatish Balay 806835f2295SStefano Zampini PetscCheck(info >= 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to LU factorization %" PetscBLASInt_FMT, info); 807835f2295SStefano Zampini PetscCheck(info <= 0, PETSC_COMM_SELF, PETSC_ERR_MAT_LU_ZRPVT, "Bad LU factorization %" PetscBLASInt_FMT, info); 8088208b9aeSStefano Zampini 8094396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_LU; 8104396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_LU; 8114396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_LU; 8124396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU; 813d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 814db4efbfdSBarry Smith 8159566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 8169566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 817f6224b95SHong Zhang 8189566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((2.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3)); 8193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 820db4efbfdSBarry Smith } 821db4efbfdSBarry Smith 822d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 823d71ae5a4SJacob Faibussowitsch { 8244396437dSToby Isaac MatFactorInfo info; 8254396437dSToby Isaac 8264396437dSToby Isaac PetscFunctionBegin; 8279566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 828dbbe0bcdSBarry Smith PetscUseTypeMethod(fact, lufactor, NULL, NULL, &info); 8293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8304396437dSToby Isaac } 8314396437dSToby Isaac 832d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, IS col, const MatFactorInfo *info) 833d71ae5a4SJacob Faibussowitsch { 8344396437dSToby Isaac PetscFunctionBegin; 8354396437dSToby Isaac fact->preallocated = PETSC_TRUE; 8364396437dSToby Isaac fact->assembled = PETSC_TRUE; 8374396437dSToby Isaac fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 8383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8394396437dSToby Isaac } 8404396437dSToby Isaac 841a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */ 842d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactor_SeqDense(Mat A, IS perm, const MatFactorInfo *factinfo) 843d71ae5a4SJacob Faibussowitsch { 844db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 845c5df96a5SBarry Smith PetscBLASInt info, n; 846db4efbfdSBarry Smith 847db4efbfdSBarry Smith PetscFunctionBegin; 8489566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 8493ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 850b94d7dedSBarry Smith if (A->spd == PETSC_BOOL3_TRUE) { 8519566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 852792fecdfSBarry Smith PetscCallBLAS("LAPACKpotrf", LAPACKpotrf_("L", &n, mat->v, &mat->lda, &info)); 8539566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 854a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX) 855b94d7dedSBarry Smith } else if (A->hermitian == PETSC_BOOL3_TRUE) { 8564dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 857a49dc2a2SStefano Zampini if (!mat->fwork) { 858a49dc2a2SStefano Zampini PetscScalar dummy; 859a49dc2a2SStefano Zampini 860a49dc2a2SStefano Zampini mat->lfwork = -1; 8619566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 862792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info)); 8639566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 86407c83e99SJose E. Roman PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork)); 8659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 866a49dc2a2SStefano Zampini } 8679566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 868792fecdfSBarry Smith PetscCallBLAS("LAPACKhetrf", LAPACKhetrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 8699566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 870a49dc2a2SStefano Zampini #endif 871a49dc2a2SStefano Zampini } else { /* symmetric case */ 8724dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(A->rmap->n, &mat->pivots)); } 873a49dc2a2SStefano Zampini if (!mat->fwork) { 874a49dc2a2SStefano Zampini PetscScalar dummy; 875a49dc2a2SStefano Zampini 876a49dc2a2SStefano Zampini mat->lfwork = -1; 8779566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 878792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, &dummy, &mat->lfwork, &info)); 8799566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 8806497c311SBarry Smith PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork)); 8819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 882a49dc2a2SStefano Zampini } 8839566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 884792fecdfSBarry Smith PetscCallBLAS("LAPACKsytrf", LAPACKsytrf_("L", &n, mat->v, &mat->lda, mat->pivots, mat->fwork, &mat->lfwork, &info)); 8859566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 886a49dc2a2SStefano Zampini } 887835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_MAT_CH_ZRPVT, "Bad factorization: zero pivot in row %" PetscBLASInt_FMT, info - 1); 8888208b9aeSStefano Zampini 8894396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_Cholesky; 8904396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_Cholesky; 8914396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_Cholesky; 8924396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky; 893d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 8942205254eSKarl Rupp 8959566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 8969566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 897f6224b95SHong Zhang 8989566063dSJacob Faibussowitsch PetscCall(PetscLogFlops((1.0 * A->cmap->n * A->cmap->n * A->cmap->n) / 3.0)); 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900db4efbfdSBarry Smith } 901db4efbfdSBarry Smith 902d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 903d71ae5a4SJacob Faibussowitsch { 904db4efbfdSBarry Smith MatFactorInfo info; 905db4efbfdSBarry Smith 906db4efbfdSBarry Smith PetscFunctionBegin; 907db4efbfdSBarry Smith info.fill = 1.0; 9082205254eSKarl Rupp 9099566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 910dbbe0bcdSBarry Smith PetscUseTypeMethod(fact, choleskyfactor, NULL, &info); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912db4efbfdSBarry Smith } 913db4efbfdSBarry Smith 914d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info) 915d71ae5a4SJacob Faibussowitsch { 916db4efbfdSBarry Smith PetscFunctionBegin; 917c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 9181bbcc794SSatish Balay fact->preallocated = PETSC_TRUE; 919719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 9203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 921db4efbfdSBarry Smith } 922db4efbfdSBarry Smith 923d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactor_SeqDense(Mat A, IS col, const MatFactorInfo *minfo) 924d71ae5a4SJacob Faibussowitsch { 9254905a7bcSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 9264905a7bcSToby Isaac PetscBLASInt n, m, info, min, max; 9274905a7bcSToby Isaac 9284905a7bcSToby Isaac PetscFunctionBegin; 9299566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &n)); 9309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 9314396437dSToby Isaac max = PetscMax(m, n); 9324396437dSToby Isaac min = PetscMin(m, n); 9334dfa11a4SJacob Faibussowitsch if (!mat->tau) { PetscCall(PetscMalloc1(min, &mat->tau)); } 9344dfa11a4SJacob Faibussowitsch if (!mat->pivots) { PetscCall(PetscMalloc1(n, &mat->pivots)); } 935f4f49eeaSPierre Jolivet if (!mat->qrrhs) PetscCall(MatCreateVecs(A, NULL, &mat->qrrhs)); 9363ba16761SJacob Faibussowitsch if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(PETSC_SUCCESS); 9374905a7bcSToby Isaac if (!mat->fwork) { 9384905a7bcSToby Isaac PetscScalar dummy; 9394905a7bcSToby Isaac 9404905a7bcSToby Isaac mat->lfwork = -1; 9419566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 942792fecdfSBarry Smith PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, &dummy, &mat->lfwork, &info)); 9439566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 9446497c311SBarry Smith PetscCall(PetscBLASIntCast((PetscCount)(PetscRealPart(dummy)), &mat->lfwork)); 9459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->lfwork, &mat->fwork)); 9464905a7bcSToby Isaac } 9479566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 948792fecdfSBarry Smith PetscCallBLAS("LAPACKgeqrf", LAPACKgeqrf_(&m, &n, mat->v, &mat->lda, mat->tau, mat->fwork, &mat->lfwork, &info)); 9499566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 950835f2295SStefano Zampini PetscCheck(!info, PETSC_COMM_SELF, PETSC_ERR_LIB, "Bad argument to QR factorization %" PetscBLASInt_FMT, info); 9514905a7bcSToby Isaac // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR. For now just say rank is min of m and n 9524905a7bcSToby Isaac mat->rank = min; 9534905a7bcSToby Isaac 9544396437dSToby Isaac A->ops->solve = MatSolve_SeqDense_QR; 9554396437dSToby Isaac A->ops->matsolve = MatMatSolve_SeqDense_QR; 9564905a7bcSToby Isaac A->factortype = MAT_FACTOR_QR; 9574905a7bcSToby Isaac if (m == n) { 9584396437dSToby Isaac A->ops->solvetranspose = MatSolveTranspose_SeqDense_QR; 9594396437dSToby Isaac A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR; 9604905a7bcSToby Isaac } 9614905a7bcSToby Isaac 9629566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 9639566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &A->solvertype)); 9644905a7bcSToby Isaac 9659566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * min * min * (max - min / 3.0))); 9663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9674905a7bcSToby Isaac } 9684905a7bcSToby Isaac 969d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact, Mat A, const MatFactorInfo *info_dummy) 970d71ae5a4SJacob Faibussowitsch { 9714905a7bcSToby Isaac MatFactorInfo info; 9724905a7bcSToby Isaac 9734905a7bcSToby Isaac PetscFunctionBegin; 9744905a7bcSToby Isaac info.fill = 1.0; 9754905a7bcSToby Isaac 9769566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqDense(fact, A, MAT_COPY_VALUES)); 977cac4c232SBarry Smith PetscUseMethod(fact, "MatQRFactor_C", (Mat, IS, const MatFactorInfo *), (fact, NULL, &info)); 9783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9794905a7bcSToby Isaac } 9804905a7bcSToby Isaac 981d71ae5a4SJacob Faibussowitsch PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact, Mat A, IS row, const MatFactorInfo *info) 982d71ae5a4SJacob Faibussowitsch { 9834905a7bcSToby Isaac PetscFunctionBegin; 9844905a7bcSToby Isaac fact->assembled = PETSC_TRUE; 9854905a7bcSToby Isaac fact->preallocated = PETSC_TRUE; 9869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)fact, "MatQRFactorNumeric_C", MatQRFactorNumeric_SeqDense)); 9873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9884905a7bcSToby Isaac } 9894905a7bcSToby Isaac 990ca15aa20SStefano Zampini /* uses LAPACK */ 991d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A, MatFactorType ftype, Mat *fact) 992d71ae5a4SJacob Faibussowitsch { 993db4efbfdSBarry Smith PetscFunctionBegin; 9949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), fact)); 9959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*fact, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 9969566063dSJacob Faibussowitsch PetscCall(MatSetType(*fact, MATDENSE)); 99766e17bc3SBarry Smith (*fact)->trivialsymbolic = PETSC_TRUE; 9982a350339SBarry Smith if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) { 999db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 10002a350339SBarry Smith (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense; 1001bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 1002db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 1003bf5a80bcSToby Isaac } else if (ftype == MAT_FACTOR_QR) { 1004f4f49eeaSPierre Jolivet PetscCall(PetscObjectComposeFunction((PetscObject)*fact, "MatQRFactorSymbolic_C", MatQRFactorSymbolic_SeqDense)); 1005db4efbfdSBarry Smith } 1006d5f3da31SBarry Smith (*fact)->factortype = ftype; 100700c67f3bSHong Zhang 10089566063dSJacob Faibussowitsch PetscCall(PetscFree((*fact)->solvertype)); 10099566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC, &(*fact)->solvertype)); 10109566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_LU])); 10119566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ILU])); 10129566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY])); 10139566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL, (char **)&(*fact)->preferredordering[MAT_FACTOR_ICC])); 10143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1015db4efbfdSBarry Smith } 1016db4efbfdSBarry Smith 1017d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSOR_SeqDense(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec xx) 1018d71ae5a4SJacob Faibussowitsch { 1019c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1020d9ca1df4SBarry Smith PetscScalar *x, *v = mat->v, zero = 0.0, xt; 1021d9ca1df4SBarry Smith const PetscScalar *b; 1022d0f46423SBarry Smith PetscInt m = A->rmap->n, i; 102323fff9afSBarry Smith PetscBLASInt o = 1, bm = 0; 1024289bc588SBarry Smith 10253a40ed3dSBarry Smith PetscFunctionBegin; 102647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 102708401ef6SPierre Jolivet PetscCheck(A->offloadmask != PETSC_OFFLOAD_GPU, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not implemented"); 1028ca15aa20SStefano Zampini #endif 1029422a814eSBarry Smith if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */ 10309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(m, &bm)); 1031289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 10323bffc371SBarry Smith /* this is a hack fix, should have another version without the second BLASdotu */ 10339566063dSJacob Faibussowitsch PetscCall(VecSet(xx, zero)); 1034289bc588SBarry Smith } 10359566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 10369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 1037b965ef7fSBarry Smith its = its * lits; 103808401ef6SPierre Jolivet PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 1039289bc588SBarry Smith while (its--) { 1040fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 1041289bc588SBarry Smith for (i = 0; i < m; i++) { 1042792fecdfSBarry Smith PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o)); 104355a1b374SBarry Smith x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift); 1044289bc588SBarry Smith } 1045289bc588SBarry Smith } 1046fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1047289bc588SBarry Smith for (i = m - 1; i >= 0; i--) { 1048792fecdfSBarry Smith PetscCallBLAS("BLASdotu", xt = b[i] - BLASdotu_(&bm, v + i, &bm, x, &o)); 104955a1b374SBarry Smith x[i] = (1. - omega) * x[i] + omega * (xt + v[i + i * m] * x[i]) / (v[i + i * m] + shift); 1050289bc588SBarry Smith } 1051289bc588SBarry Smith } 1052289bc588SBarry Smith } 10539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 10549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 10553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1056289bc588SBarry Smith } 1057289bc588SBarry Smith 10580be0d8bdSHansol Suh static PetscErrorCode MatMultColumnRangeKernel_SeqDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end, PetscBool trans, PetscBool herm) 1059d71ae5a4SJacob Faibussowitsch { 1060c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1061d9ca1df4SBarry Smith PetscScalar *y, _DOne = 1.0, _DZero = 0.0; 10620805154bSBarry Smith PetscBLASInt m, n, _One = 1; 1063d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 10643a40ed3dSBarry Smith 10653a40ed3dSBarry Smith PetscFunctionBegin; 10669566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 10670be0d8bdSHansol Suh PetscCall(PetscBLASIntCast(c_end - c_start, &n)); 10689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 10699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(yy, &y)); 10700be0d8bdSHansol Suh if (!m || !n) { 10715ac36cfcSBarry Smith PetscBLASInt i; 1072459e8d23SBlanca Mellado Pinto if (trans) 1073459e8d23SBlanca Mellado Pinto for (i = 0; i < n; i++) y[i] = 0.0; 1074459e8d23SBlanca Mellado Pinto else 10755ac36cfcSBarry Smith for (i = 0; i < m; i++) y[i] = 0.0; 10765ac36cfcSBarry Smith } else { 1077459e8d23SBlanca Mellado Pinto if (trans) { 10780be0d8bdSHansol Suh if (herm) PetscCallBLAS("BLASgemv", BLASgemv_("C", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DZero, y + c_start, &_One)); 10790be0d8bdSHansol Suh else PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DZero, y + c_start, &_One)); 1080459e8d23SBlanca Mellado Pinto } else { 10810be0d8bdSHansol Suh PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x + c_start, &_One, &_DZero, y, &_One)); 1082459e8d23SBlanca Mellado Pinto } 10830be0d8bdSHansol Suh PetscCall(PetscLogFlops(2.0 * m * n - n)); 10845ac36cfcSBarry Smith } 10859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 10869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(yy, &y)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088289bc588SBarry Smith } 10896ee01492SSatish Balay 10900be0d8bdSHansol Suh PetscErrorCode MatMultHermitianTransposeColumnRange_SeqDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end) 10910be0d8bdSHansol Suh { 10920be0d8bdSHansol Suh PetscFunctionBegin; 10930be0d8bdSHansol Suh PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, c_start, c_end, PETSC_TRUE, PETSC_TRUE)); 10940be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 10950be0d8bdSHansol Suh } 10960be0d8bdSHansol Suh 1097459e8d23SBlanca Mellado Pinto PetscErrorCode MatMult_SeqDense(Mat A, Vec xx, Vec yy) 1098459e8d23SBlanca Mellado Pinto { 1099459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 11000be0d8bdSHansol Suh PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_FALSE, PETSC_FALSE)); 1101459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 1102459e8d23SBlanca Mellado Pinto } 1103459e8d23SBlanca Mellado Pinto 1104459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultTranspose_SeqDense(Mat A, Vec xx, Vec yy) 1105459e8d23SBlanca Mellado Pinto { 1106459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 11070be0d8bdSHansol Suh PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_FALSE)); 1108459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 1109459e8d23SBlanca Mellado Pinto } 1110459e8d23SBlanca Mellado Pinto 1111459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultHermitianTranspose_SeqDense(Mat A, Vec xx, Vec yy) 1112459e8d23SBlanca Mellado Pinto { 1113459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 11140be0d8bdSHansol Suh PetscCall(MatMultColumnRangeKernel_SeqDense(A, xx, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_TRUE)); 1115459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 1116459e8d23SBlanca Mellado Pinto } 1117459e8d23SBlanca Mellado Pinto 11180be0d8bdSHansol Suh static PetscErrorCode MatMultAddColumnRangeKernel_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end, PetscBool trans, PetscBool herm) 1119d71ae5a4SJacob Faibussowitsch { 1120c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1121d9ca1df4SBarry Smith const PetscScalar *v = mat->v, *x; 1122d9ca1df4SBarry Smith PetscScalar *y, _DOne = 1.0; 11230805154bSBarry Smith PetscBLASInt m, n, _One = 1; 11243a40ed3dSBarry Smith 11253a40ed3dSBarry Smith PetscFunctionBegin; 11269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &m)); 11270be0d8bdSHansol Suh PetscCall(PetscBLASIntCast(c_end - c_start, &n)); 11289566063dSJacob Faibussowitsch PetscCall(VecCopy(zz, yy)); 11290be0d8bdSHansol Suh if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); 11309566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 1131459e8d23SBlanca Mellado Pinto PetscCall(VecGetArrayRead(xx, &x)); 1132459e8d23SBlanca Mellado Pinto if (trans) { 11330be0d8bdSHansol Suh if (herm) PetscCallBLAS("BLASgemv", BLASgemv_("C", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DOne, y + c_start, &_One)); 11340be0d8bdSHansol Suh else PetscCallBLAS("BLASgemv", BLASgemv_("T", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x, &_One, &_DOne, y + c_start, &_One)); 1135459e8d23SBlanca Mellado Pinto } else { 11360be0d8bdSHansol Suh PetscCallBLAS("BLASgemv", BLASgemv_("N", &m, &n, &_DOne, v + c_start * mat->lda, &mat->lda, x + c_start, &_One, &_DOne, y, &_One)); 1137459e8d23SBlanca Mellado Pinto } 11389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 11400be0d8bdSHansol Suh PetscCall(PetscLogFlops(2.0 * m * n)); 11410be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 11420be0d8bdSHansol Suh } 11430be0d8bdSHansol Suh 11440be0d8bdSHansol Suh PetscErrorCode MatMultAddColumnRange_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end) 11450be0d8bdSHansol Suh { 11460be0d8bdSHansol Suh PetscFunctionBegin; 11470be0d8bdSHansol Suh PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, c_start, c_end, PETSC_FALSE, PETSC_FALSE)); 11480be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 11490be0d8bdSHansol Suh } 11500be0d8bdSHansol Suh 11510be0d8bdSHansol Suh PetscErrorCode MatMultHermitianTransposeAddColumnRange_SeqDense(Mat A, Vec xx, Vec zz, Vec yy, PetscInt c_start, PetscInt c_end) 11520be0d8bdSHansol Suh { 11530be0d8bdSHansol Suh PetscFunctionBegin; 11540be0d8bdSHansol Suh PetscMPIInt rank; 11550be0d8bdSHansol Suh PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &rank)); 11560be0d8bdSHansol Suh PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, c_start, c_end, PETSC_TRUE, PETSC_TRUE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158289bc588SBarry Smith } 11596ee01492SSatish Balay 1160459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy) 1161459e8d23SBlanca Mellado Pinto { 1162459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 11630be0d8bdSHansol Suh PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_FALSE, PETSC_FALSE)); 1164459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 1165459e8d23SBlanca Mellado Pinto } 1166459e8d23SBlanca Mellado Pinto 1167d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy) 1168d71ae5a4SJacob Faibussowitsch { 11693a40ed3dSBarry Smith PetscFunctionBegin; 11700be0d8bdSHansol Suh PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_FALSE)); 1171459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 1172459e8d23SBlanca Mellado Pinto } 1173459e8d23SBlanca Mellado Pinto 1174459e8d23SBlanca Mellado Pinto PetscErrorCode MatMultHermitianTransposeAdd_SeqDense(Mat A, Vec xx, Vec zz, Vec yy) 1175459e8d23SBlanca Mellado Pinto { 1176459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 11770be0d8bdSHansol Suh PetscCall(MatMultAddColumnRangeKernel_SeqDense(A, xx, zz, yy, 0, A->cmap->n, PETSC_TRUE, PETSC_TRUE)); 11783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1179289bc588SBarry Smith } 1180289bc588SBarry Smith 1181d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals) 1182d71ae5a4SJacob Faibussowitsch { 1183c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 118413f74950SBarry Smith PetscInt i; 118567e560aaSBarry Smith 11863a40ed3dSBarry Smith PetscFunctionBegin; 1187c3e1b152SPierre Jolivet if (ncols) *ncols = A->cmap->n; 1188289bc588SBarry Smith if (cols) { 11899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n, cols)); 1190d0f46423SBarry Smith for (i = 0; i < A->cmap->n; i++) (*cols)[i] = i; 1191289bc588SBarry Smith } 1192289bc588SBarry Smith if (vals) { 1193ca15aa20SStefano Zampini const PetscScalar *v; 1194ca15aa20SStefano Zampini 11959566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 11969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->cmap->n, vals)); 1197ca15aa20SStefano Zampini v += row; 11989371c9d4SSatish Balay for (i = 0; i < A->cmap->n; i++) { 11999371c9d4SSatish Balay (*vals)[i] = *v; 12009371c9d4SSatish Balay v += mat->lda; 12019371c9d4SSatish Balay } 12029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 1203289bc588SBarry Smith } 12043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1205289bc588SBarry Smith } 12066ee01492SSatish Balay 1207d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqDense(Mat A, PetscInt row, PetscInt *ncols, PetscInt **cols, PetscScalar **vals) 1208d71ae5a4SJacob Faibussowitsch { 1209606d414cSSatish Balay PetscFunctionBegin; 12109566063dSJacob Faibussowitsch if (cols) PetscCall(PetscFree(*cols)); 12119566063dSJacob Faibussowitsch if (vals) PetscCall(PetscFree(*vals)); 12123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1213289bc588SBarry Smith } 12142ef1f0ffSBarry Smith 1215d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], const PetscScalar v[], InsertMode addv) 1216d71ae5a4SJacob Faibussowitsch { 1217c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1218ca15aa20SStefano Zampini PetscScalar *av; 121913f74950SBarry Smith PetscInt i, j, idx = 0; 122047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1221c70f7ee4SJunchao Zhang PetscOffloadMask oldf; 1222ca15aa20SStefano Zampini #endif 1223d6dfbf8fSBarry Smith 12243a40ed3dSBarry Smith PetscFunctionBegin; 12259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &av)); 1226289bc588SBarry Smith if (!mat->roworiented) { 1227dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1228289bc588SBarry Smith for (j = 0; j < n; j++) { 12299371c9d4SSatish Balay if (indexn[j] < 0) { 12309371c9d4SSatish Balay idx += m; 12319371c9d4SSatish Balay continue; 12329371c9d4SSatish Balay } 12336bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1234289bc588SBarry Smith for (i = 0; i < m; i++) { 12359371c9d4SSatish Balay if (indexm[i] < 0) { 12369371c9d4SSatish Balay idx++; 12379371c9d4SSatish Balay continue; 12389371c9d4SSatish Balay } 12396bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 12408c4a67a0SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] = v ? v[idx++] : (idx++, 0.0); 1241289bc588SBarry Smith } 1242289bc588SBarry Smith } 12430be0d8bdSHansol Suh } else { 1244289bc588SBarry Smith for (j = 0; j < n; j++) { 12459371c9d4SSatish Balay if (indexn[j] < 0) { 12469371c9d4SSatish Balay idx += m; 12479371c9d4SSatish Balay continue; 12489371c9d4SSatish Balay } 12496bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 1250289bc588SBarry Smith for (i = 0; i < m; i++) { 12519371c9d4SSatish Balay if (indexm[i] < 0) { 12529371c9d4SSatish Balay idx++; 12539371c9d4SSatish Balay continue; 12549371c9d4SSatish Balay } 12556bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 12568c4a67a0SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] += v ? v[idx++] : (idx++, 0.0); 1257289bc588SBarry Smith } 1258289bc588SBarry Smith } 1259289bc588SBarry Smith } 12603a40ed3dSBarry Smith } else { 1261dbb450caSBarry Smith if (addv == INSERT_VALUES) { 1262e8d4e0b9SBarry Smith for (i = 0; i < m; i++) { 12639371c9d4SSatish Balay if (indexm[i] < 0) { 12649371c9d4SSatish Balay idx += n; 12659371c9d4SSatish Balay continue; 12669371c9d4SSatish Balay } 12676bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1268e8d4e0b9SBarry Smith for (j = 0; j < n; j++) { 12699371c9d4SSatish Balay if (indexn[j] < 0) { 12709371c9d4SSatish Balay idx++; 12719371c9d4SSatish Balay continue; 12729371c9d4SSatish Balay } 12736bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 12748c4a67a0SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] = v ? v[idx++] : (idx++, 0.0); 1275e8d4e0b9SBarry Smith } 1276e8d4e0b9SBarry Smith } 12770be0d8bdSHansol Suh } else { 1278289bc588SBarry Smith for (i = 0; i < m; i++) { 12799371c9d4SSatish Balay if (indexm[i] < 0) { 12809371c9d4SSatish Balay idx += n; 12819371c9d4SSatish Balay continue; 12829371c9d4SSatish Balay } 12836bdcaf15SBarry Smith PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, indexm[i], A->rmap->n - 1); 1284289bc588SBarry Smith for (j = 0; j < n; j++) { 12859371c9d4SSatish Balay if (indexn[j] < 0) { 12869371c9d4SSatish Balay idx++; 12879371c9d4SSatish Balay continue; 12889371c9d4SSatish Balay } 12896bdcaf15SBarry Smith PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, indexn[j], A->cmap->n - 1); 12908c4a67a0SStefano Zampini av[indexn[j] * mat->lda + indexm[i]] += v ? v[idx++] : (idx++, 0.0); 1291289bc588SBarry Smith } 1292289bc588SBarry Smith } 1293289bc588SBarry Smith } 1294e8d4e0b9SBarry Smith } 1295ca15aa20SStefano Zampini /* hack to prevent unneeded copy to the GPU while returning the array */ 129647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1297c70f7ee4SJunchao Zhang oldf = A->offloadmask; 1298c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_GPU; 1299ca15aa20SStefano Zampini #endif 13009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &av)); 130147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1302c70f7ee4SJunchao Zhang A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU); 1303ca15aa20SStefano Zampini #endif 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1305289bc588SBarry Smith } 1306e8d4e0b9SBarry Smith 1307d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetValues_SeqDense(Mat A, PetscInt m, const PetscInt indexm[], PetscInt n, const PetscInt indexn[], PetscScalar v[]) 1308d71ae5a4SJacob Faibussowitsch { 1309ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1310ca15aa20SStefano Zampini const PetscScalar *vv; 131113f74950SBarry Smith PetscInt i, j; 1312ae80bb75SLois Curfman McInnes 13133a40ed3dSBarry Smith PetscFunctionBegin; 13149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &vv)); 1315ae80bb75SLois Curfman McInnes /* row-oriented output */ 1316ae80bb75SLois Curfman McInnes for (i = 0; i < m; i++) { 13179371c9d4SSatish Balay if (indexm[i] < 0) { 13189371c9d4SSatish Balay v += n; 13199371c9d4SSatish Balay continue; 13209371c9d4SSatish Balay } 132108401ef6SPierre Jolivet PetscCheck(indexm[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested larger than number rows %" PetscInt_FMT, indexm[i], A->rmap->n); 1322ae80bb75SLois Curfman McInnes for (j = 0; j < n; j++) { 13239371c9d4SSatish Balay if (indexn[j] < 0) { 13249371c9d4SSatish Balay v++; 13259371c9d4SSatish Balay continue; 13269371c9d4SSatish Balay } 132708401ef6SPierre Jolivet PetscCheck(indexn[j] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column %" PetscInt_FMT " requested larger than number columns %" PetscInt_FMT, indexn[j], A->cmap->n); 1328ca15aa20SStefano Zampini *v++ = vv[indexn[j] * mat->lda + indexm[i]]; 1329ae80bb75SLois Curfman McInnes } 1330ae80bb75SLois Curfman McInnes } 13319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &vv)); 13323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1333ae80bb75SLois Curfman McInnes } 1334ae80bb75SLois Curfman McInnes 1335d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_Dense_Binary(Mat mat, PetscViewer viewer) 1336d71ae5a4SJacob Faibussowitsch { 13378491ab44SLisandro Dalcin PetscBool skipHeader; 13388491ab44SLisandro Dalcin PetscViewerFormat format; 13393e1d7bceSPierre Jolivet PetscInt header[4], M, N, m, lda, i, j; 13403e1d7bceSPierre Jolivet PetscCount k; 13418491ab44SLisandro Dalcin const PetscScalar *v; 13428491ab44SLisandro Dalcin PetscScalar *vwork; 1343aabbc4fbSShri Abhyankar 1344aabbc4fbSShri Abhyankar PetscFunctionBegin; 13459566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 13469566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader)); 13479566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 13488491ab44SLisandro Dalcin if (skipHeader) format = PETSC_VIEWER_NATIVE; 1349aabbc4fbSShri Abhyankar 13509566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 13518491ab44SLisandro Dalcin 13528491ab44SLisandro Dalcin /* write matrix header */ 13539371c9d4SSatish Balay header[0] = MAT_FILE_CLASSID; 13549371c9d4SSatish Balay header[1] = M; 13559371c9d4SSatish Balay header[2] = N; 13568491ab44SLisandro Dalcin header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M * N; 13579566063dSJacob Faibussowitsch if (!skipHeader) PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 13588491ab44SLisandro Dalcin 13599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 13608491ab44SLisandro Dalcin if (format != PETSC_VIEWER_NATIVE) { 13618491ab44SLisandro Dalcin PetscInt nnz = m * N, *iwork; 13628491ab44SLisandro Dalcin /* store row lengths for each row */ 13639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz, &iwork)); 13648491ab44SLisandro Dalcin for (i = 0; i < m; i++) iwork[i] = N; 13659566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 13668491ab44SLisandro Dalcin /* store column indices (zero start index) */ 13678491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 13689371c9d4SSatish Balay for (j = 0; j < N; j++, k++) iwork[k] = j; 13699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, iwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 13709566063dSJacob Faibussowitsch PetscCall(PetscFree(iwork)); 13718491ab44SLisandro Dalcin } 13728491ab44SLisandro Dalcin /* store matrix values as a dense matrix in row major order */ 13739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m * N, &vwork)); 13749566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat, &v)); 13759566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat, &lda)); 13768491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 13773e1d7bceSPierre Jolivet for (j = 0; j < N; j++, k++) vwork[k] = v[i + (size_t)lda * j]; 13789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat, &v)); 13799566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, vwork, m * N, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 13809566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 13813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13828491ab44SLisandro Dalcin } 13838491ab44SLisandro Dalcin 1384d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_Dense_Binary(Mat mat, PetscViewer viewer) 1385d71ae5a4SJacob Faibussowitsch { 13868491ab44SLisandro Dalcin PetscBool skipHeader; 13878491ab44SLisandro Dalcin PetscInt header[4], M, N, m, nz, lda, i, j, k; 13888491ab44SLisandro Dalcin PetscInt rows, cols; 13898491ab44SLisandro Dalcin PetscScalar *v, *vwork; 13908491ab44SLisandro Dalcin 13918491ab44SLisandro Dalcin PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 13939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipHeader)); 13948491ab44SLisandro Dalcin 13958491ab44SLisandro Dalcin if (!skipHeader) { 13969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 139708401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 13989371c9d4SSatish Balay M = header[1]; 13999371c9d4SSatish Balay N = header[2]; 140008401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 140108401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 14028491ab44SLisandro Dalcin nz = header[3]; 1403aed4548fSBarry Smith PetscCheck(nz == MATRIX_BINARY_FORMAT_DENSE || nz >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Unknown matrix format %" PetscInt_FMT " in file", nz); 1404aabbc4fbSShri Abhyankar } else { 14059566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 1406aed4548fSBarry Smith PetscCheck(M >= 0 && N >= 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix"); 14078491ab44SLisandro Dalcin nz = MATRIX_BINARY_FORMAT_DENSE; 1408e6324fbbSBarry Smith } 1409aabbc4fbSShri Abhyankar 14108491ab44SLisandro Dalcin /* setup global sizes if not set */ 14118491ab44SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 14128491ab44SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 14139566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat)); 14148491ab44SLisandro Dalcin /* check if global sizes are correct */ 14159566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 1416aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 1417aabbc4fbSShri Abhyankar 14189566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 14199566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 14209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mat, &v)); 14219566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat, &lda)); 14228491ab44SLisandro Dalcin if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense format */ 14233e1d7bceSPierre Jolivet PetscCount nnz = (size_t)m * N; 14248491ab44SLisandro Dalcin /* read in matrix values */ 14259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz, &vwork)); 14269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 14278491ab44SLisandro Dalcin /* store values in column major order */ 14288491ab44SLisandro Dalcin for (j = 0; j < N; j++) 14293e1d7bceSPierre Jolivet for (i = 0; i < m; i++) v[i + (size_t)lda * j] = vwork[(size_t)i * N + j]; 14309566063dSJacob Faibussowitsch PetscCall(PetscFree(vwork)); 14318491ab44SLisandro Dalcin } else { /* matrix in file is sparse format */ 14328491ab44SLisandro Dalcin PetscInt nnz = 0, *rlens, *icols; 14338491ab44SLisandro Dalcin /* read in row lengths */ 14349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rlens)); 14359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rlens, m, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 14368491ab44SLisandro Dalcin for (i = 0; i < m; i++) nnz += rlens[i]; 14378491ab44SLisandro Dalcin /* read in column indices and values */ 14389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nnz, &icols, nnz, &vwork)); 14399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, icols, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 14409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, vwork, nnz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 14418491ab44SLisandro Dalcin /* store values in column major order */ 14428491ab44SLisandro Dalcin for (k = 0, i = 0; i < m; i++) 14439371c9d4SSatish Balay for (j = 0; j < rlens[i]; j++, k++) v[i + lda * icols[k]] = vwork[k]; 14449566063dSJacob Faibussowitsch PetscCall(PetscFree(rlens)); 14459566063dSJacob Faibussowitsch PetscCall(PetscFree2(icols, vwork)); 1446aabbc4fbSShri Abhyankar } 14479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mat, &v)); 14489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 14499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 14503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1451aabbc4fbSShri Abhyankar } 1452aabbc4fbSShri Abhyankar 145366976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer) 1454d71ae5a4SJacob Faibussowitsch { 1455eb91f321SVaclav Hapla PetscBool isbinary, ishdf5; 1456eb91f321SVaclav Hapla 1457eb91f321SVaclav Hapla PetscFunctionBegin; 1458eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1459eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1460eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 14619566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 14629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 14639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 1464eb91f321SVaclav Hapla if (isbinary) { 14659566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1466eb91f321SVaclav Hapla } else if (ishdf5) { 1467eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 14689566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1469eb91f321SVaclav Hapla #else 1470eb91f321SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1471eb91f321SVaclav Hapla #endif 1472eb91f321SVaclav Hapla } else { 147398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 1474eb91f321SVaclav Hapla } 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1476eb91f321SVaclav Hapla } 1477eb91f321SVaclav Hapla 1478d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_ASCII(Mat A, PetscViewer viewer) 1479d71ae5a4SJacob Faibussowitsch { 1480932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense *)A->data; 148113f74950SBarry Smith PetscInt i, j; 14822dcb1b2aSMatthew Knepley const char *name; 1483ca15aa20SStefano Zampini PetscScalar *v, *av; 1484f3ef73ceSBarry Smith PetscViewerFormat format; 14855f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 1486ace3abfcSBarry Smith PetscBool allreal = PETSC_TRUE; 14875f481a85SSatish Balay #endif 1488932b0c3eSLois Curfman McInnes 14893a40ed3dSBarry Smith PetscFunctionBegin; 14909566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&av)); 14919566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1492456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 14933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); /* do nothing for now */ 1494fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 14959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1496d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 1497ca15aa20SStefano Zampini v = av + i; 14989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1499d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1500aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1501329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 15029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", j, (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v))); 1503329f5518SBarry Smith } else if (PetscRealPart(*v)) { 15049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)PetscRealPart(*v))); 15056831982aSBarry Smith } 150680cd9d93SLois Curfman McInnes #else 150748a46eb9SPierre Jolivet if (*v) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", j, (double)*v)); 150880cd9d93SLois Curfman McInnes #endif 15091b807ce4Svictorle v += a->lda; 151080cd9d93SLois Curfman McInnes } 15119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 151280cd9d93SLois Curfman McInnes } 15139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 15143a40ed3dSBarry Smith } else { 15159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1516aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 151747989497SBarry Smith /* determine if matrix has all real values */ 1518bcd8d3a4SJose E. Roman for (j = 0; j < A->cmap->n; j++) { 1519bcd8d3a4SJose E. Roman v = av + j * a->lda; 1520bcd8d3a4SJose E. Roman for (i = 0; i < A->rmap->n; i++) { 15219371c9d4SSatish Balay if (PetscImaginaryPart(v[i])) { 15229371c9d4SSatish Balay allreal = PETSC_FALSE; 15239371c9d4SSatish Balay break; 15249371c9d4SSatish Balay } 152547989497SBarry Smith } 1526bcd8d3a4SJose E. Roman } 152747989497SBarry Smith #endif 1528fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 15299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name)); 15309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", A->rmap->n, A->cmap->n)); 15319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s = zeros(%" PetscInt_FMT ",%" PetscInt_FMT ");\n", name, A->rmap->n, A->cmap->n)); 15329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s = [\n", name)); 1533ffac6cdbSBarry Smith } 1534ffac6cdbSBarry Smith 1535d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 1536ca15aa20SStefano Zampini v = av + i; 1537d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1538aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 153947989497SBarry Smith if (allreal) { 15409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)PetscRealPart(*v))); 154147989497SBarry Smith } else { 15429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e + %18.16ei ", (double)PetscRealPart(*v), (double)PetscImaginaryPart(*v))); 154347989497SBarry Smith } 1544289bc588SBarry Smith #else 15459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%18.16e ", (double)*v)); 1546289bc588SBarry Smith #endif 15471b807ce4Svictorle v += a->lda; 1548289bc588SBarry Smith } 15499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1550289bc588SBarry Smith } 155148a46eb9SPierre Jolivet if (format == PETSC_VIEWER_ASCII_MATLAB) PetscCall(PetscViewerASCIIPrintf(viewer, "];\n")); 15529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1553da3a660dSBarry Smith } 15549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&av)); 15559566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1557289bc588SBarry Smith } 1558289bc588SBarry Smith 15599804daf3SBarry Smith #include <petscdraw.h> 1560d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw, void *Aa) 1561d71ae5a4SJacob Faibussowitsch { 1562f1af5d2fSBarry Smith Mat A = (Mat)Aa; 1563383922c3SLisandro Dalcin PetscInt m = A->rmap->n, n = A->cmap->n, i, j; 1564383922c3SLisandro Dalcin int color = PETSC_DRAW_WHITE; 1565ca15aa20SStefano Zampini const PetscScalar *v; 1566b0a32e0cSBarry Smith PetscViewer viewer; 1567b05fc000SLisandro Dalcin PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 1568f3ef73ceSBarry Smith PetscViewerFormat format; 1569f1af5d2fSBarry Smith 1570f1af5d2fSBarry Smith PetscFunctionBegin; 15719566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 15729566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 15739566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 1574f1af5d2fSBarry Smith 1575f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 15769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &v)); 1577fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1578d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1579f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 1580f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 15819371c9d4SSatish Balay x_l = j; 15829371c9d4SSatish Balay x_r = x_l + 1.0; 1583f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1584f1af5d2fSBarry Smith y_l = m - i - 1.0; 1585f1af5d2fSBarry Smith y_r = y_l + 1.0; 1586ca15aa20SStefano Zampini if (PetscRealPart(v[j * m + i]) > 0.) color = PETSC_DRAW_RED; 1587ca15aa20SStefano Zampini else if (PetscRealPart(v[j * m + i]) < 0.) color = PETSC_DRAW_BLUE; 1588ca15aa20SStefano Zampini else continue; 15899566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1590f1af5d2fSBarry Smith } 1591f1af5d2fSBarry Smith } 1592d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1593f1af5d2fSBarry Smith } else { 1594f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1595f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1596b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1597b05fc000SLisandro Dalcin PetscDraw popup; 1598b05fc000SLisandro Dalcin 1599f1af5d2fSBarry Smith for (i = 0; i < m * n; i++) { 1600f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1601f1af5d2fSBarry Smith } 1602383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 16039566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 16049566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv)); 1605383922c3SLisandro Dalcin 1606d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1607f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 1608f1af5d2fSBarry Smith x_l = j; 1609f1af5d2fSBarry Smith x_r = x_l + 1.0; 1610f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1611f1af5d2fSBarry Smith y_l = m - i - 1.0; 1612f1af5d2fSBarry Smith y_r = y_l + 1.0; 1613b05fc000SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v[j * m + i]), minv, maxv); 16149566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1615f1af5d2fSBarry Smith } 1616f1af5d2fSBarry Smith } 1617d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1618f1af5d2fSBarry Smith } 16199566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &v)); 16203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1621f1af5d2fSBarry Smith } 1622f1af5d2fSBarry Smith 1623d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_SeqDense_Draw(Mat A, PetscViewer viewer) 1624d71ae5a4SJacob Faibussowitsch { 1625b0a32e0cSBarry Smith PetscDraw draw; 1626ace3abfcSBarry Smith PetscBool isnull; 1627329f5518SBarry Smith PetscReal xr, yr, xl, yl, h, w; 1628f1af5d2fSBarry Smith 1629f1af5d2fSBarry Smith PetscFunctionBegin; 16309566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 16319566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 16323ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 1633f1af5d2fSBarry Smith 16349371c9d4SSatish Balay xr = A->cmap->n; 16359371c9d4SSatish Balay yr = A->rmap->n; 16369371c9d4SSatish Balay h = yr / 10.0; 16379371c9d4SSatish Balay w = xr / 10.0; 16389371c9d4SSatish Balay xr += w; 16399371c9d4SSatish Balay yr += h; 16409371c9d4SSatish Balay xl = -w; 16419371c9d4SSatish Balay yl = -h; 16429566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 16449566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqDense_Draw_Zoom, A)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 16469566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 16473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1648f1af5d2fSBarry Smith } 1649f1af5d2fSBarry Smith 1650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqDense(Mat A, PetscViewer viewer) 1651d71ae5a4SJacob Faibussowitsch { 1652ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw; 1653932b0c3eSLois Curfman McInnes 16543a40ed3dSBarry Smith PetscFunctionBegin; 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 16581baa6e33SBarry Smith if (iascii) PetscCall(MatView_SeqDense_ASCII(A, viewer)); 16591baa6e33SBarry Smith else if (isbinary) PetscCall(MatView_Dense_Binary(A, viewer)); 16601baa6e33SBarry Smith else if (isdraw) PetscCall(MatView_SeqDense_Draw(A, viewer)); 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1662932b0c3eSLois Curfman McInnes } 1663289bc588SBarry Smith 1664d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A, const PetscScalar *array) 1665d71ae5a4SJacob Faibussowitsch { 1666d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1667d3042a70SBarry Smith 1668d3042a70SBarry Smith PetscFunctionBegin; 166928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 167028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 16716635c364SPierre Jolivet PetscCheck(!a->unplacedarray, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseResetArray() first"); 1672d3042a70SBarry Smith a->unplacedarray = a->v; 1673d3042a70SBarry Smith a->unplaced_user_alloc = a->user_alloc; 1674d3042a70SBarry Smith a->v = (PetscScalar *)array; 1675637a0070SStefano Zampini a->user_alloc = PETSC_TRUE; 167647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1677c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1678ca15aa20SStefano Zampini #endif 16793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1680d3042a70SBarry Smith } 1681d3042a70SBarry Smith 1682d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_SeqDense(Mat A) 1683d71ae5a4SJacob Faibussowitsch { 1684d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1685d3042a70SBarry Smith 1686d3042a70SBarry Smith PetscFunctionBegin; 168728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 168828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1689d3042a70SBarry Smith a->v = a->unplacedarray; 1690d3042a70SBarry Smith a->user_alloc = a->unplaced_user_alloc; 1691d3042a70SBarry Smith a->unplacedarray = NULL; 169247d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1693c70f7ee4SJunchao Zhang A->offloadmask = PETSC_OFFLOAD_CPU; 1694ca15aa20SStefano Zampini #endif 16953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1696d3042a70SBarry Smith } 1697d3042a70SBarry Smith 1698d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A, const PetscScalar *array) 1699d71ae5a4SJacob Faibussowitsch { 1700d5ea218eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 1701d5ea218eSStefano Zampini 1702d5ea218eSStefano Zampini PetscFunctionBegin; 170328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 170428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 17059566063dSJacob Faibussowitsch if (!a->user_alloc) PetscCall(PetscFree(a->v)); 1706d5ea218eSStefano Zampini a->v = (PetscScalar *)array; 1707d5ea218eSStefano Zampini a->user_alloc = PETSC_FALSE; 170847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1709d5ea218eSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 1710d5ea218eSStefano Zampini #endif 17113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1712d5ea218eSStefano Zampini } 1713d5ea218eSStefano Zampini 1714d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqDense(Mat mat) 1715d71ae5a4SJacob Faibussowitsch { 1716ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)mat->data; 171790f02eecSBarry Smith 17183a40ed3dSBarry Smith PetscFunctionBegin; 17193ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows %" PetscInt_FMT " Cols %" PetscInt_FMT, mat->rmap->n, mat->cmap->n)); 1720f4f49eeaSPierre Jolivet PetscCall(VecDestroy(&l->qrrhs)); 17219566063dSJacob Faibussowitsch PetscCall(PetscFree(l->tau)); 17229566063dSJacob Faibussowitsch PetscCall(PetscFree(l->pivots)); 17239566063dSJacob Faibussowitsch PetscCall(PetscFree(l->fwork)); 17249566063dSJacob Faibussowitsch if (!l->user_alloc) PetscCall(PetscFree(l->v)); 17259566063dSJacob Faibussowitsch if (!l->unplaced_user_alloc) PetscCall(PetscFree(l->unplacedarray)); 172628b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 172728b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 17289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&l->cvec)); 17299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&l->cmat)); 17309566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1731dbd8c25aSHong Zhang 17329566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 17339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactor_C", NULL)); 17342e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorSymbolic_C", NULL)); 17352e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatQRFactorNumeric_C", NULL)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 17379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 17399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 17409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 17419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 17439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 17469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 17479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqaij_C", NULL)); 17488baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_elemental_C", NULL)); 17508baccfbdSHong Zhang #endif 1751d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_scalapack_C", NULL)); 1753d24d4204SJose E. Roman #endif 17542bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensecuda_C", NULL)); 17569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", NULL)); 17579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensecuda_seqdense_C", NULL)); 17582e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensecuda_C", NULL)); 17592bf066beSStefano Zampini #endif 176047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 176147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_seqdense_seqdensehip_C", NULL)); 176247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", NULL)); 176347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdensehip_seqdense_C", NULL)); 176447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdensehip_C", NULL)); 176547d993e7Ssuyashtn #endif 17669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSeqDenseSetPreallocation_C", NULL)); 17679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqaij_seqdense_C", NULL)); 17689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqdense_seqdense_C", NULL)); 17699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqbaij_seqdense_C", NULL)); 17709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_seqsbaij_seqdense_C", NULL)); 177152c5f739Sprj- 17729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 17739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 17749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 17759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 17769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 17779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 17789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 17799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 17809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 17819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 17820be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", NULL)); 17830be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", NULL)); 17840be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", NULL)); 17853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1786289bc588SBarry Smith } 1787289bc588SBarry Smith 1788d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqDense(Mat A, MatReuse reuse, Mat *matout) 1789d71ae5a4SJacob Faibussowitsch { 1790c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 17916536e3caSStefano Zampini PetscInt k, j, m = A->rmap->n, M = mat->lda, n = A->cmap->n; 179287828ca2SBarry Smith PetscScalar *v, tmp; 179348b35521SBarry Smith 17943a40ed3dSBarry Smith PetscFunctionBegin; 17957fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 17966536e3caSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 17976536e3caSStefano Zampini if (m == n) { /* in place transpose */ 17989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1799d3e5ee88SLois Curfman McInnes for (j = 0; j < m; j++) { 1800289bc588SBarry Smith for (k = 0; k < j; k++) { 18011b807ce4Svictorle tmp = v[j + k * M]; 18021b807ce4Svictorle v[j + k * M] = v[k + j * M]; 18031b807ce4Svictorle v[k + j * M] = tmp; 1804289bc588SBarry Smith } 1805289bc588SBarry Smith } 18069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 18076536e3caSStefano Zampini } else { /* reuse memory, temporary allocates new memory */ 18086536e3caSStefano Zampini PetscScalar *v2; 18096536e3caSStefano Zampini PetscLayout tmplayout; 18106536e3caSStefano Zampini 18119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((size_t)m * n, &v2)); 18129566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 18136536e3caSStefano Zampini for (j = 0; j < n; j++) { 18146536e3caSStefano Zampini for (k = 0; k < m; k++) v2[j + (size_t)k * n] = v[k + (size_t)j * M]; 18156536e3caSStefano Zampini } 18169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, v2, (size_t)m * n)); 18179566063dSJacob Faibussowitsch PetscCall(PetscFree(v2)); 18189566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 18196536e3caSStefano Zampini /* cleanup size dependent quantities */ 18209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mat->cvec)); 18219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat->cmat)); 18229566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->pivots)); 18239566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->fwork)); 18246536e3caSStefano Zampini /* swap row/col layouts */ 18256497c311SBarry Smith PetscCall(PetscBLASIntCast(n, &mat->lda)); 18266536e3caSStefano Zampini tmplayout = A->rmap; 18276536e3caSStefano Zampini A->rmap = A->cmap; 18286536e3caSStefano Zampini A->cmap = tmplayout; 18296536e3caSStefano Zampini } 18303a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1831d3e5ee88SLois Curfman McInnes Mat tmat; 1832ec8511deSBarry Smith Mat_SeqDense *tmatd; 183387828ca2SBarry Smith PetscScalar *v2; 1834af36a384SStefano Zampini PetscInt M2; 1835ea709b57SSatish Balay 18366536e3caSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 18379566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &tmat)); 18389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(tmat, A->cmap->n, A->rmap->n, A->cmap->n, A->rmap->n)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetType(tmat, ((PetscObject)A)->type_name)); 18409566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(tmat, NULL)); 1841ca15aa20SStefano Zampini } else tmat = *matout; 1842ca15aa20SStefano Zampini 18439566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&v)); 18449566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(tmat, &v2)); 1845ec8511deSBarry Smith tmatd = (Mat_SeqDense *)tmat->data; 1846ca15aa20SStefano Zampini M2 = tmatd->lda; 1847d3e5ee88SLois Curfman McInnes for (j = 0; j < n; j++) { 1848af36a384SStefano Zampini for (k = 0; k < m; k++) v2[j + k * M2] = v[k + j * M]; 1849d3e5ee88SLois Curfman McInnes } 18509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(tmat, &v2)); 18519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&v)); 18529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(tmat, MAT_FINAL_ASSEMBLY)); 18539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(tmat, MAT_FINAL_ASSEMBLY)); 18546536e3caSStefano Zampini *matout = tmat; 185548b35521SBarry Smith } 18563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1857289bc588SBarry Smith } 1858289bc588SBarry Smith 1859d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_SeqDense(Mat A1, Mat A2, PetscBool *flg) 1860d71ae5a4SJacob Faibussowitsch { 1861c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense *)A1->data; 1862c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense *)A2->data; 1863ca15aa20SStefano Zampini PetscInt i; 1864ca15aa20SStefano Zampini const PetscScalar *v1, *v2; 18659ea5d5aeSSatish Balay 18663a40ed3dSBarry Smith PetscFunctionBegin; 18679371c9d4SSatish Balay if (A1->rmap->n != A2->rmap->n) { 18689371c9d4SSatish Balay *flg = PETSC_FALSE; 18693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18709371c9d4SSatish Balay } 18719371c9d4SSatish Balay if (A1->cmap->n != A2->cmap->n) { 18729371c9d4SSatish Balay *flg = PETSC_FALSE; 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18749371c9d4SSatish Balay } 18759566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A1, &v1)); 18769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A2, &v2)); 1877ca15aa20SStefano Zampini for (i = 0; i < A1->cmap->n; i++) { 18789566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(v1, v2, A1->rmap->n, flg)); 18793ba16761SJacob Faibussowitsch if (*flg == PETSC_FALSE) PetscFunctionReturn(PETSC_SUCCESS); 1880ca15aa20SStefano Zampini v1 += mat1->lda; 1881ca15aa20SStefano Zampini v2 += mat2->lda; 18821b807ce4Svictorle } 18839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A1, &v1)); 18849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A2, &v2)); 188577c4ece6SBarry Smith *flg = PETSC_TRUE; 18863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1887289bc588SBarry Smith } 1888289bc588SBarry Smith 188914277c92SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqDense(Mat A, Vec v) 1890d71ae5a4SJacob Faibussowitsch { 1891c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 189213f74950SBarry Smith PetscInt i, n, len; 1893ca15aa20SStefano Zampini PetscScalar *x; 1894ca15aa20SStefano Zampini const PetscScalar *vv; 189544cd7ae7SLois Curfman McInnes 18963a40ed3dSBarry Smith PetscFunctionBegin; 18979566063dSJacob Faibussowitsch PetscCall(VecGetSize(v, &n)); 18989566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 1899d0f46423SBarry Smith len = PetscMin(A->rmap->n, A->cmap->n); 19009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &vv)); 190108401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 1902ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = vv[i * mat->lda + i]; 19039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &vv)); 19049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 19053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1906289bc588SBarry Smith } 1907289bc588SBarry Smith 1908d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_SeqDense(Mat A, Vec ll, Vec rr) 1909d71ae5a4SJacob Faibussowitsch { 1910c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1911f1ceaac6SMatthew G. Knepley const PetscScalar *l, *r; 1912ca15aa20SStefano Zampini PetscScalar x, *v, *vv; 1913d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n; 191455659b69SBarry Smith 19153a40ed3dSBarry Smith PetscFunctionBegin; 19169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &vv)); 191728988994SBarry Smith if (ll) { 19189566063dSJacob Faibussowitsch PetscCall(VecGetSize(ll, &m)); 19199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 192008401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vec wrong size"); 1921da3a660dSBarry Smith for (i = 0; i < m; i++) { 1922da3a660dSBarry Smith x = l[i]; 1923ca15aa20SStefano Zampini v = vv + i; 19249371c9d4SSatish Balay for (j = 0; j < n; j++) { 19259371c9d4SSatish Balay (*v) *= x; 19269371c9d4SSatish Balay v += mat->lda; 19279371c9d4SSatish Balay } 1928da3a660dSBarry Smith } 19299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 19309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 1931da3a660dSBarry Smith } 193228988994SBarry Smith if (rr) { 19339566063dSJacob Faibussowitsch PetscCall(VecGetSize(rr, &n)); 19349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r)); 193508401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec wrong size"); 1936da3a660dSBarry Smith for (i = 0; i < n; i++) { 1937da3a660dSBarry Smith x = r[i]; 1938ca15aa20SStefano Zampini v = vv + i * mat->lda; 19392205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 1940da3a660dSBarry Smith } 19419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r)); 19429566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 1943da3a660dSBarry Smith } 19449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &vv)); 19453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1946289bc588SBarry Smith } 1947289bc588SBarry Smith 1948d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_SeqDense(Mat A, NormType type, PetscReal *nrm) 1949d71ae5a4SJacob Faibussowitsch { 1950c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 1951ca15aa20SStefano Zampini PetscScalar *v, *vv; 1952329f5518SBarry Smith PetscReal sum = 0.0; 195375f6d85dSStefano Zampini PetscInt lda, m = A->rmap->n, i, j; 195455659b69SBarry Smith 19553a40ed3dSBarry Smith PetscFunctionBegin; 19569566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, (const PetscScalar **)&vv)); 19579566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(A, &lda)); 1958ca15aa20SStefano Zampini v = vv; 1959289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1960a5ce6ee0Svictorle if (lda > m) { 1961d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1962ca15aa20SStefano Zampini v = vv + j * lda; 1963a5ce6ee0Svictorle for (i = 0; i < m; i++) { 19649371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 19659371c9d4SSatish Balay v++; 1966a5ce6ee0Svictorle } 1967a5ce6ee0Svictorle } 1968a5ce6ee0Svictorle } else { 1969570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16) 1970570b7f6dSBarry Smith PetscBLASInt one = 1, cnt = A->cmap->n * A->rmap->n; 1971792fecdfSBarry Smith PetscCallBLAS("BLASnrm2", *nrm = BLASnrm2_(&cnt, v, &one)); 1972570b7f6dSBarry Smith } 1973570b7f6dSBarry Smith #else 1974d0f46423SBarry Smith for (i = 0; i < A->cmap->n * A->rmap->n; i++) { 19759371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 19769371c9d4SSatish Balay v++; 1977289bc588SBarry Smith } 1978a5ce6ee0Svictorle } 19798f1a2a5eSBarry Smith *nrm = PetscSqrtReal(sum); 1980570b7f6dSBarry Smith #endif 19819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * A->cmap->n * A->rmap->n)); 19823a40ed3dSBarry Smith } else if (type == NORM_1) { 1983064f8208SBarry Smith *nrm = 0.0; 1984d0f46423SBarry Smith for (j = 0; j < A->cmap->n; j++) { 1985ca15aa20SStefano Zampini v = vv + j * mat->lda; 1986289bc588SBarry Smith sum = 0.0; 1987d0f46423SBarry Smith for (i = 0; i < A->rmap->n; i++) { 19889371c9d4SSatish Balay sum += PetscAbsScalar(*v); 19899371c9d4SSatish Balay v++; 1990289bc588SBarry Smith } 1991064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1992289bc588SBarry Smith } 19939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n)); 19943a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1995064f8208SBarry Smith *nrm = 0.0; 1996d0f46423SBarry Smith for (j = 0; j < A->rmap->n; j++) { 1997ca15aa20SStefano Zampini v = vv + j; 1998289bc588SBarry Smith sum = 0.0; 1999d0f46423SBarry Smith for (i = 0; i < A->cmap->n; i++) { 20009371c9d4SSatish Balay sum += PetscAbsScalar(*v); 20019371c9d4SSatish Balay v += mat->lda; 2002289bc588SBarry Smith } 2003064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 2004289bc588SBarry Smith } 20059566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * A->cmap->n * A->rmap->n)); 2006e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No two norm"); 20079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, (const PetscScalar **)&vv)); 20083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2009289bc588SBarry Smith } 2010289bc588SBarry Smith 2011d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqDense(Mat A, MatOption op, PetscBool flg) 2012d71ae5a4SJacob Faibussowitsch { 2013c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense *)A->data; 201467e560aaSBarry Smith 20153a40ed3dSBarry Smith PetscFunctionBegin; 2016b5a2b587SKris Buschelman switch (op) { 2017d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 2018d71ae5a4SJacob Faibussowitsch aij->roworiented = flg; 2019d71ae5a4SJacob Faibussowitsch break; 2020d71ae5a4SJacob Faibussowitsch default: 2021*888c827cSStefano Zampini break; 20223a40ed3dSBarry Smith } 20233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2024289bc588SBarry Smith } 2025289bc588SBarry Smith 2026d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqDense(Mat A) 2027d71ae5a4SJacob Faibussowitsch { 2028ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)A->data; 20293d8925e7SStefano Zampini PetscInt lda = l->lda, m = A->rmap->n, n = A->cmap->n, j; 2030ca15aa20SStefano Zampini PetscScalar *v; 20313a40ed3dSBarry Smith 20323a40ed3dSBarry Smith PetscFunctionBegin; 20339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A, &v)); 2034a5ce6ee0Svictorle if (lda > m) { 203548a46eb9SPierre Jolivet for (j = 0; j < n; j++) PetscCall(PetscArrayzero(v + j * lda, m)); 2036a5ce6ee0Svictorle } else { 20379566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(v, PetscInt64Mult(m, n))); 2038a5ce6ee0Svictorle } 20399566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A, &v)); 20403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20416f0a148fSBarry Smith } 20426f0a148fSBarry Smith 2043d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroRows_SeqDense(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 2044d71ae5a4SJacob Faibussowitsch { 2045ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense *)A->data; 2046b9679d65SBarry Smith PetscInt m = l->lda, n = A->cmap->n, i, j; 2047ca15aa20SStefano Zampini PetscScalar *slot, *bb, *v; 204897b48c8fSBarry Smith const PetscScalar *xx; 204955659b69SBarry Smith 20503a40ed3dSBarry Smith PetscFunctionBegin; 205176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2052b9679d65SBarry Smith for (i = 0; i < N; i++) { 205308401ef6SPierre Jolivet PetscCheck(rows[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row requested to be zeroed"); 205408401ef6SPierre Jolivet PetscCheck(rows[i] < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT, rows[i], A->rmap->n); 2055b9679d65SBarry Smith } 205676bd3646SJed Brown } 20573ba16761SJacob Faibussowitsch if (!N) PetscFunctionReturn(PETSC_SUCCESS); 2058b9679d65SBarry Smith 2059dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 206097b48c8fSBarry Smith if (x && b) { 20619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 20629566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 20632205254eSKarl Rupp for (i = 0; i < N; i++) bb[rows[i]] = diag * xx[rows[i]]; 20649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 20659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 206697b48c8fSBarry Smith } 206797b48c8fSBarry Smith 20689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 20696f0a148fSBarry Smith for (i = 0; i < N; i++) { 2070ca15aa20SStefano Zampini slot = v + rows[i]; 20719371c9d4SSatish Balay for (j = 0; j < n; j++) { 20729371c9d4SSatish Balay *slot = 0.0; 20739371c9d4SSatish Balay slot += m; 20749371c9d4SSatish Balay } 20756f0a148fSBarry Smith } 2076f4df32b1SMatthew Knepley if (diag != 0.0) { 207708401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only coded for square matrices"); 20786f0a148fSBarry Smith for (i = 0; i < N; i++) { 2079ca15aa20SStefano Zampini slot = v + (m + 1) * rows[i]; 2080f4df32b1SMatthew Knepley *slot = diag; 20816f0a148fSBarry Smith } 20826f0a148fSBarry Smith } 20839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 20843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20856f0a148fSBarry Smith } 2086557bce09SLois Curfman McInnes 2087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A, PetscInt *lda) 2088d71ae5a4SJacob Faibussowitsch { 208949a6ff4bSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 209049a6ff4bSBarry Smith 209149a6ff4bSBarry Smith PetscFunctionBegin; 209249a6ff4bSBarry Smith *lda = mat->lda; 20933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 209449a6ff4bSBarry Smith } 209549a6ff4bSBarry Smith 2096d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetArray_SeqDense(Mat A, PetscScalar **array) 2097d71ae5a4SJacob Faibussowitsch { 2098c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 20993a40ed3dSBarry Smith 21003a40ed3dSBarry Smith PetscFunctionBegin; 210128b400f6SJacob Faibussowitsch PetscCheck(!mat->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 210264e87e97SBarry Smith *array = mat->v; 21033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 210464e87e97SBarry Smith } 21050754003eSLois Curfman McInnes 2106d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A, PetscScalar **array) 2107d71ae5a4SJacob Faibussowitsch { 21083a40ed3dSBarry Smith PetscFunctionBegin; 210975f6d85dSStefano Zampini if (array) *array = NULL; 21103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2111ff14e315SSatish Balay } 21120754003eSLois Curfman McInnes 21130f74d2c1SSatish Balay /*@ 211411a5261eSBarry Smith MatDenseGetLDA - gets the leading dimension of the array returned from `MatDenseGetArray()` 211549a6ff4bSBarry Smith 21162ef1f0ffSBarry Smith Not Collective 211749a6ff4bSBarry Smith 211849a6ff4bSBarry Smith Input Parameter: 2119fe59aa6dSJacob Faibussowitsch . A - a `MATDENSE` or `MATDENSECUDA` matrix 212049a6ff4bSBarry Smith 212149a6ff4bSBarry Smith Output Parameter: 212249a6ff4bSBarry Smith . lda - the leading dimension 212349a6ff4bSBarry Smith 212449a6ff4bSBarry Smith Level: intermediate 212549a6ff4bSBarry Smith 21261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseSetLDA()` 212749a6ff4bSBarry Smith @*/ 2128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLDA(Mat A, PetscInt *lda) 2129d71ae5a4SJacob Faibussowitsch { 213049a6ff4bSBarry Smith PetscFunctionBegin; 2131d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 21324f572ea9SToby Isaac PetscAssertPointer(lda, 2); 213375f6d85dSStefano Zampini MatCheckPreallocated(A, 1); 2134cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetLDA_C", (Mat, PetscInt *), (A, lda)); 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213649a6ff4bSBarry Smith } 213749a6ff4bSBarry Smith 21380f74d2c1SSatish Balay /*@ 213911a5261eSBarry Smith MatDenseSetLDA - Sets the leading dimension of the array used by the `MATDENSE` matrix 2140ad16ce7aSStefano Zampini 21412323109cSBarry Smith Collective if the matrix layouts have not yet been setup 2142ad16ce7aSStefano Zampini 2143d8d19677SJose E. Roman Input Parameters: 2144fe59aa6dSJacob Faibussowitsch + A - a `MATDENSE` or `MATDENSECUDA` matrix 2145ad16ce7aSStefano Zampini - lda - the leading dimension 2146ad16ce7aSStefano Zampini 2147ad16ce7aSStefano Zampini Level: intermediate 2148ad16ce7aSStefano Zampini 21491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetLDA()` 2150ad16ce7aSStefano Zampini @*/ 2151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA(Mat A, PetscInt lda) 2152d71ae5a4SJacob Faibussowitsch { 2153ad16ce7aSStefano Zampini PetscFunctionBegin; 2154ad16ce7aSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2155cac4c232SBarry Smith PetscTryMethod(A, "MatDenseSetLDA_C", (Mat, PetscInt), (A, lda)); 21563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2157ad16ce7aSStefano Zampini } 2158ad16ce7aSStefano Zampini 2159ad16ce7aSStefano Zampini /*@C 216011a5261eSBarry Smith MatDenseGetArray - gives read-write access to the array where the data for a `MATDENSE` matrix is stored 216173a71a0fSBarry Smith 2162c3339decSBarry Smith Logically Collective 216373a71a0fSBarry Smith 216473a71a0fSBarry Smith Input Parameter: 2165fe59aa6dSJacob Faibussowitsch . A - a dense matrix 216673a71a0fSBarry Smith 216773a71a0fSBarry Smith Output Parameter: 216873a71a0fSBarry Smith . array - pointer to the data 216973a71a0fSBarry Smith 217073a71a0fSBarry Smith Level: intermediate 217173a71a0fSBarry Smith 2172fe59aa6dSJacob Faibussowitsch Fortran Notes: 21730ab4885dSBarry Smith `MatDenseGetArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseGetArrayF90()` 21740ab4885dSBarry Smith 21751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 217673a71a0fSBarry Smith @*/ 21775d83a8b1SBarry Smith PetscErrorCode MatDenseGetArray(Mat A, PetscScalar *array[]) 2178d71ae5a4SJacob Faibussowitsch { 217973a71a0fSBarry Smith PetscFunctionBegin; 2180d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 21814f572ea9SToby Isaac PetscAssertPointer(array, 2); 2182cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array)); 21833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 218473a71a0fSBarry Smith } 218573a71a0fSBarry Smith 2186dec5eb66SMatthew G Knepley /*@C 218711a5261eSBarry Smith MatDenseRestoreArray - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArray()` 218873a71a0fSBarry Smith 2189c3339decSBarry Smith Logically Collective 21908572280aSBarry Smith 21918572280aSBarry Smith Input Parameters: 2192fe59aa6dSJacob Faibussowitsch + A - a dense matrix 21932ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 21948572280aSBarry Smith 21958572280aSBarry Smith Level: intermediate 21968572280aSBarry Smith 2197fe59aa6dSJacob Faibussowitsch Fortran Notes: 21980ab4885dSBarry Smith `MatDenseRestoreArray()` Fortran binding is deprecated (since PETSc 3.19), use `MatDenseRestoreArrayF90()` 21990ab4885dSBarry Smith 22001cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 22018572280aSBarry Smith @*/ 22025d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArray(Mat A, PetscScalar *array[]) 2203d71ae5a4SJacob Faibussowitsch { 22048572280aSBarry Smith PetscFunctionBegin; 2205d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 22064f572ea9SToby Isaac if (array) PetscAssertPointer(array, 2); 2207cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array)); 22089566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 220947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 2210637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 2211637a0070SStefano Zampini #endif 22123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22138572280aSBarry Smith } 22148572280aSBarry Smith 22158572280aSBarry Smith /*@C 221611a5261eSBarry Smith MatDenseGetArrayRead - gives read-only access to the array where the data for a `MATDENSE` matrix is stored 22178572280aSBarry Smith 2218fb850c59SBarry Smith Not Collective 22198572280aSBarry Smith 22208572280aSBarry Smith Input Parameter: 2221fe59aa6dSJacob Faibussowitsch . A - a dense matrix 22228572280aSBarry Smith 22238572280aSBarry Smith Output Parameter: 22248572280aSBarry Smith . array - pointer to the data 22258572280aSBarry Smith 22268572280aSBarry Smith Level: intermediate 22278572280aSBarry Smith 22281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 22298572280aSBarry Smith @*/ 22305d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayRead(Mat A, const PetscScalar *array[]) 2231d71ae5a4SJacob Faibussowitsch { 22328572280aSBarry Smith PetscFunctionBegin; 2233d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 22344f572ea9SToby Isaac PetscAssertPointer(array, 2); 22355c0db29aSPierre Jolivet PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array)); 22363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22378572280aSBarry Smith } 22388572280aSBarry Smith 22398572280aSBarry Smith /*@C 224011a5261eSBarry Smith MatDenseRestoreArrayRead - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayRead()` 22418572280aSBarry Smith 2242fb850c59SBarry Smith Not Collective 224373a71a0fSBarry Smith 224473a71a0fSBarry Smith Input Parameters: 2245fe59aa6dSJacob Faibussowitsch + A - a dense matrix 22462ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 224773a71a0fSBarry Smith 224873a71a0fSBarry Smith Level: intermediate 224973a71a0fSBarry Smith 22501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayRead()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 225173a71a0fSBarry Smith @*/ 22525d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayRead(Mat A, const PetscScalar *array[]) 2253d71ae5a4SJacob Faibussowitsch { 225473a71a0fSBarry Smith PetscFunctionBegin; 2255d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 22564f572ea9SToby Isaac if (array) PetscAssertPointer(array, 2); 22575c0db29aSPierre Jolivet PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array)); 22583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 225973a71a0fSBarry Smith } 226073a71a0fSBarry Smith 22616947451fSStefano Zampini /*@C 226211a5261eSBarry Smith MatDenseGetArrayWrite - gives write-only access to the array where the data for a `MATDENSE` matrix is stored 22636947451fSStefano Zampini 2264fb850c59SBarry Smith Not Collective 22656947451fSStefano Zampini 22666947451fSStefano Zampini Input Parameter: 2267fe59aa6dSJacob Faibussowitsch . A - a dense matrix 22686947451fSStefano Zampini 22696947451fSStefano Zampini Output Parameter: 22706947451fSStefano Zampini . array - pointer to the data 22716947451fSStefano Zampini 22726947451fSStefano Zampini Level: intermediate 22736947451fSStefano Zampini 22741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 22756947451fSStefano Zampini @*/ 22765d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayWrite(Mat A, PetscScalar *array[]) 2277d71ae5a4SJacob Faibussowitsch { 22786947451fSStefano Zampini PetscFunctionBegin; 2279d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 22804f572ea9SToby Isaac PetscAssertPointer(array, 2); 2281cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array)); 22823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22836947451fSStefano Zampini } 22846947451fSStefano Zampini 22856947451fSStefano Zampini /*@C 228611a5261eSBarry Smith MatDenseRestoreArrayWrite - returns access to the array where the data for a `MATDENSE` matrix is stored obtained by `MatDenseGetArrayWrite()` 22876947451fSStefano Zampini 2288fb850c59SBarry Smith Not Collective 22896947451fSStefano Zampini 22906947451fSStefano Zampini Input Parameters: 2291fe59aa6dSJacob Faibussowitsch + A - a dense matrix 22922ef1f0ffSBarry Smith - array - pointer to the data (may be `NULL`) 22936947451fSStefano Zampini 22946947451fSStefano Zampini Level: intermediate 22956947451fSStefano Zampini 22961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWrite()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()` 22976947451fSStefano Zampini @*/ 22985d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayWrite(Mat A, PetscScalar *array[]) 2299d71ae5a4SJacob Faibussowitsch { 23006947451fSStefano Zampini PetscFunctionBegin; 2301d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 23024f572ea9SToby Isaac if (array) PetscAssertPointer(array, 2); 2303cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array)); 23049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 230547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 23066947451fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 23076947451fSStefano Zampini #endif 23083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23096947451fSStefano Zampini } 23106947451fSStefano Zampini 2311cd3f9d89SJunchao Zhang /*@C 2312cd3f9d89SJunchao Zhang MatDenseGetArrayAndMemType - gives read-write access to the array where the data for a `MATDENSE` matrix is stored 2313cd3f9d89SJunchao Zhang 2314cd3f9d89SJunchao Zhang Logically Collective 2315cd3f9d89SJunchao Zhang 2316cd3f9d89SJunchao Zhang Input Parameter: 2317fe59aa6dSJacob Faibussowitsch . A - a dense matrix 2318cd3f9d89SJunchao Zhang 2319cd3f9d89SJunchao Zhang Output Parameters: 2320cd3f9d89SJunchao Zhang + array - pointer to the data 2321cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2322cd3f9d89SJunchao Zhang 2323cd3f9d89SJunchao Zhang Level: intermediate 2324cd3f9d89SJunchao Zhang 2325fb850c59SBarry Smith Note: 23262ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 23272ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 23282ef1f0ffSBarry Smith 23291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArrayRead()`, 2330cd3f9d89SJunchao Zhang `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2331cd3f9d89SJunchao Zhang @*/ 23325d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayAndMemType(Mat A, PetscScalar *array[], PetscMemType *mtype) 2333cd3f9d89SJunchao Zhang { 2334cd3f9d89SJunchao Zhang PetscBool isMPI; 2335cd3f9d89SJunchao Zhang 2336cd3f9d89SJunchao Zhang PetscFunctionBegin; 2337cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 23384f572ea9SToby Isaac PetscAssertPointer(array, 2); 2339e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2340cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2341cd3f9d89SJunchao Zhang if (isMPI) { 2342cd3f9d89SJunchao Zhang /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */ 2343cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2344cd3f9d89SJunchao Zhang } else { 2345cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *); 23463ba16761SJacob Faibussowitsch 23473ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayAndMemType_C", &fptr)); 2348cd3f9d89SJunchao Zhang if (fptr) { 2349cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2350cd3f9d89SJunchao Zhang } else { 2351cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseGetArray_C", (Mat, PetscScalar **), (A, array)); 2352cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2353cd3f9d89SJunchao Zhang } 2354cd3f9d89SJunchao Zhang } 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2356cd3f9d89SJunchao Zhang } 2357cd3f9d89SJunchao Zhang 2358cd3f9d89SJunchao Zhang /*@C 2359cd3f9d89SJunchao Zhang MatDenseRestoreArrayAndMemType - returns access to the array that is obtained by `MatDenseGetArrayAndMemType()` 2360cd3f9d89SJunchao Zhang 2361cd3f9d89SJunchao Zhang Logically Collective 2362cd3f9d89SJunchao Zhang 2363cd3f9d89SJunchao Zhang Input Parameters: 2364fe59aa6dSJacob Faibussowitsch + A - a dense matrix 2365cd3f9d89SJunchao Zhang - array - pointer to the data 2366cd3f9d89SJunchao Zhang 2367cd3f9d89SJunchao Zhang Level: intermediate 2368cd3f9d89SJunchao Zhang 23691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2370cd3f9d89SJunchao Zhang @*/ 23715d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayAndMemType(Mat A, PetscScalar *array[]) 2372cd3f9d89SJunchao Zhang { 2373cd3f9d89SJunchao Zhang PetscBool isMPI; 2374cd3f9d89SJunchao Zhang 2375cd3f9d89SJunchao Zhang PetscFunctionBegin; 2376cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 23774f572ea9SToby Isaac PetscAssertPointer(array, 2); 2378cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2379cd3f9d89SJunchao Zhang if (isMPI) { 2380cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2381cd3f9d89SJunchao Zhang } else { 2382cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **); 23833ba16761SJacob Faibussowitsch 23843ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayAndMemType_C", &fptr)); 2385cd3f9d89SJunchao Zhang if (fptr) { 2386cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2387cd3f9d89SJunchao Zhang } else { 2388cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseRestoreArray_C", (Mat, PetscScalar **), (A, array)); 2389cd3f9d89SJunchao Zhang } 2390cd3f9d89SJunchao Zhang *array = NULL; 2391cd3f9d89SJunchao Zhang } 2392cd3f9d89SJunchao Zhang PetscCall(PetscObjectStateIncrease((PetscObject)A)); 23933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2394cd3f9d89SJunchao Zhang } 2395cd3f9d89SJunchao Zhang 2396cd3f9d89SJunchao Zhang /*@C 2397cd3f9d89SJunchao Zhang MatDenseGetArrayReadAndMemType - gives read-only access to the array where the data for a `MATDENSE` matrix is stored 2398cd3f9d89SJunchao Zhang 2399cd3f9d89SJunchao Zhang Logically Collective 2400cd3f9d89SJunchao Zhang 2401cd3f9d89SJunchao Zhang Input Parameter: 2402fe59aa6dSJacob Faibussowitsch . A - a dense matrix 2403cd3f9d89SJunchao Zhang 2404cd3f9d89SJunchao Zhang Output Parameters: 2405cd3f9d89SJunchao Zhang + array - pointer to the data 2406cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2407cd3f9d89SJunchao Zhang 2408cd3f9d89SJunchao Zhang Level: intermediate 2409cd3f9d89SJunchao Zhang 2410fb850c59SBarry Smith Note: 24112ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 24122ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 24132ef1f0ffSBarry Smith 24141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayReadAndMemType()`, `MatDenseGetArrayWriteAndMemType()`, 2415cd3f9d89SJunchao Zhang `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2416cd3f9d89SJunchao Zhang @*/ 24175d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayReadAndMemType(Mat A, const PetscScalar *array[], PetscMemType *mtype) 2418cd3f9d89SJunchao Zhang { 2419cd3f9d89SJunchao Zhang PetscBool isMPI; 2420cd3f9d89SJunchao Zhang 2421cd3f9d89SJunchao Zhang PetscFunctionBegin; 2422cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 24234f572ea9SToby Isaac PetscAssertPointer(array, 2); 2424e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2425cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2426cd3f9d89SJunchao Zhang if (isMPI) { /* Dispatch here so that the code can be reused for all subclasses of MATDENSE */ 2427cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2428cd3f9d89SJunchao Zhang } else { 2429cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, const PetscScalar **, PetscMemType *); 24303ba16761SJacob Faibussowitsch 24313ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayReadAndMemType_C", &fptr)); 2432cd3f9d89SJunchao Zhang if (fptr) { 2433cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2434cd3f9d89SJunchao Zhang } else { 24355c0db29aSPierre Jolivet PetscUseMethod(A, "MatDenseGetArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array)); 2436cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2437cd3f9d89SJunchao Zhang } 2438cd3f9d89SJunchao Zhang } 24393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2440cd3f9d89SJunchao Zhang } 2441cd3f9d89SJunchao Zhang 2442cd3f9d89SJunchao Zhang /*@C 2443cd3f9d89SJunchao Zhang MatDenseRestoreArrayReadAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()` 2444cd3f9d89SJunchao Zhang 2445cd3f9d89SJunchao Zhang Logically Collective 2446cd3f9d89SJunchao Zhang 2447cd3f9d89SJunchao Zhang Input Parameters: 2448fe59aa6dSJacob Faibussowitsch + A - a dense matrix 2449cd3f9d89SJunchao Zhang - array - pointer to the data 2450cd3f9d89SJunchao Zhang 2451cd3f9d89SJunchao Zhang Level: intermediate 2452cd3f9d89SJunchao Zhang 24531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2454cd3f9d89SJunchao Zhang @*/ 24555d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat A, const PetscScalar *array[]) 2456cd3f9d89SJunchao Zhang { 2457cd3f9d89SJunchao Zhang PetscBool isMPI; 2458cd3f9d89SJunchao Zhang 2459cd3f9d89SJunchao Zhang PetscFunctionBegin; 2460cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 24614f572ea9SToby Isaac PetscAssertPointer(array, 2); 2462cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2463cd3f9d89SJunchao Zhang if (isMPI) { 2464cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayReadAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2465cd3f9d89SJunchao Zhang } else { 2466cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, const PetscScalar **); 24673ba16761SJacob Faibussowitsch 24683ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayReadAndMemType_C", &fptr)); 2469cd3f9d89SJunchao Zhang if (fptr) { 2470cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2471cd3f9d89SJunchao Zhang } else { 24725c0db29aSPierre Jolivet PetscUseMethod(A, "MatDenseRestoreArrayRead_C", (Mat, PetscScalar **), (A, (PetscScalar **)array)); 2473cd3f9d89SJunchao Zhang } 2474cd3f9d89SJunchao Zhang *array = NULL; 2475cd3f9d89SJunchao Zhang } 24763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2477cd3f9d89SJunchao Zhang } 2478cd3f9d89SJunchao Zhang 2479cd3f9d89SJunchao Zhang /*@C 2480cd3f9d89SJunchao Zhang MatDenseGetArrayWriteAndMemType - gives write-only access to the array where the data for a `MATDENSE` matrix is stored 2481cd3f9d89SJunchao Zhang 2482cd3f9d89SJunchao Zhang Logically Collective 2483cd3f9d89SJunchao Zhang 2484cd3f9d89SJunchao Zhang Input Parameter: 2485fe59aa6dSJacob Faibussowitsch . A - a dense matrix 2486cd3f9d89SJunchao Zhang 2487cd3f9d89SJunchao Zhang Output Parameters: 2488cd3f9d89SJunchao Zhang + array - pointer to the data 2489cd3f9d89SJunchao Zhang - mtype - memory type of the returned pointer 2490cd3f9d89SJunchao Zhang 2491cd3f9d89SJunchao Zhang Level: intermediate 2492cd3f9d89SJunchao Zhang 2493fb850c59SBarry Smith Note: 24942ef1f0ffSBarry Smith If the matrix is of a device type such as `MATDENSECUDA`, `MATDENSEHIP`, etc., 24952ef1f0ffSBarry Smith an array on device is always returned and is guaranteed to contain the matrix's latest data. 24962ef1f0ffSBarry Smith 24971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreArrayWriteAndMemType()`, `MatDenseGetArrayReadAndMemType()`, `MatDenseGetArrayRead()`, 2498cd3f9d89SJunchao Zhang `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()`, `MatSeqAIJGetCSRAndMemType()` 2499cd3f9d89SJunchao Zhang @*/ 25005d83a8b1SBarry Smith PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat A, PetscScalar *array[], PetscMemType *mtype) 2501cd3f9d89SJunchao Zhang { 2502cd3f9d89SJunchao Zhang PetscBool isMPI; 2503cd3f9d89SJunchao Zhang 2504cd3f9d89SJunchao Zhang PetscFunctionBegin; 2505cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 25064f572ea9SToby Isaac PetscAssertPointer(array, 2); 2507e865de01SJunchao Zhang PetscCall(MatBindToCPU(A, PETSC_FALSE)); /* We want device matrices to always return device arrays, so we unbind the matrix if it is bound to CPU */ 2508cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2509cd3f9d89SJunchao Zhang if (isMPI) { 2510cd3f9d89SJunchao Zhang PetscCall(MatDenseGetArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array, mtype)); 2511cd3f9d89SJunchao Zhang } else { 2512cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **, PetscMemType *); 25133ba16761SJacob Faibussowitsch 25143ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseGetArrayWriteAndMemType_C", &fptr)); 2515cd3f9d89SJunchao Zhang if (fptr) { 2516cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array, mtype)); 2517cd3f9d89SJunchao Zhang } else { 2518cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseGetArrayWrite_C", (Mat, PetscScalar **), (A, array)); 2519cd3f9d89SJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_HOST; 2520cd3f9d89SJunchao Zhang } 2521cd3f9d89SJunchao Zhang } 25223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2523cd3f9d89SJunchao Zhang } 2524cd3f9d89SJunchao Zhang 2525cd3f9d89SJunchao Zhang /*@C 2526cd3f9d89SJunchao Zhang MatDenseRestoreArrayWriteAndMemType - returns access to the array that is obtained by `MatDenseGetArrayReadAndMemType()` 2527cd3f9d89SJunchao Zhang 2528cd3f9d89SJunchao Zhang Logically Collective 2529cd3f9d89SJunchao Zhang 2530cd3f9d89SJunchao Zhang Input Parameters: 2531fe59aa6dSJacob Faibussowitsch + A - a dense matrix 2532cd3f9d89SJunchao Zhang - array - pointer to the data 2533cd3f9d89SJunchao Zhang 2534cd3f9d89SJunchao Zhang Level: intermediate 2535cd3f9d89SJunchao Zhang 25361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArrayWriteAndMemType()`, `MatDenseGetArray()`, `MatDenseGetArrayRead()`, `MatDenseRestoreArrayRead()`, `MatDenseGetArrayWrite()`, `MatDenseRestoreArrayWrite()` 2537cd3f9d89SJunchao Zhang @*/ 25385d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat A, PetscScalar *array[]) 2539cd3f9d89SJunchao Zhang { 2540cd3f9d89SJunchao Zhang PetscBool isMPI; 2541cd3f9d89SJunchao Zhang 2542cd3f9d89SJunchao Zhang PetscFunctionBegin; 2543cd3f9d89SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 25444f572ea9SToby Isaac PetscAssertPointer(array, 2); 2545cd3f9d89SJunchao Zhang PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &isMPI)); 2546cd3f9d89SJunchao Zhang if (isMPI) { 2547cd3f9d89SJunchao Zhang PetscCall(MatDenseRestoreArrayWriteAndMemType(((Mat_MPIDense *)A->data)->A, array)); 2548cd3f9d89SJunchao Zhang } else { 2549cd3f9d89SJunchao Zhang PetscErrorCode (*fptr)(Mat, PetscScalar **); 25503ba16761SJacob Faibussowitsch 25513ba16761SJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatDenseRestoreArrayWriteAndMemType_C", &fptr)); 2552cd3f9d89SJunchao Zhang if (fptr) { 2553cd3f9d89SJunchao Zhang PetscCall((*fptr)(A, array)); 2554cd3f9d89SJunchao Zhang } else { 2555cd3f9d89SJunchao Zhang PetscUseMethod(A, "MatDenseRestoreArrayWrite_C", (Mat, PetscScalar **), (A, array)); 2556cd3f9d89SJunchao Zhang } 2557cd3f9d89SJunchao Zhang *array = NULL; 2558cd3f9d89SJunchao Zhang } 2559cd3f9d89SJunchao Zhang PetscCall(PetscObjectStateIncrease((PetscObject)A)); 25603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2561cd3f9d89SJunchao Zhang } 2562cd3f9d89SJunchao Zhang 2563d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 2564d71ae5a4SJacob Faibussowitsch { 2565c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 2566bf5a80bcSToby Isaac PetscInt i, j, nrows, ncols, ldb; 25675d0c19d7SBarry Smith const PetscInt *irow, *icol; 256887828ca2SBarry Smith PetscScalar *av, *bv, *v = mat->v; 25690754003eSLois Curfman McInnes Mat newmat; 25700754003eSLois Curfman McInnes 25713a40ed3dSBarry Smith PetscFunctionBegin; 25729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 25739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &icol)); 25749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 25759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 25760754003eSLois Curfman McInnes 2577182d2002SSatish Balay /* Check submatrixcall */ 2578182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 257913f74950SBarry Smith PetscInt n_cols, n_rows; 25809566063dSJacob Faibussowitsch PetscCall(MatGetSize(*B, &n_rows, &n_cols)); 258121a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 2582f746d493SDmitry Karpeev /* resize the result matrix to match number of requested rows/columns */ 25839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, nrows, ncols, nrows, ncols)); 258421a2c019SBarry Smith } 2585182d2002SSatish Balay newmat = *B; 2586182d2002SSatish Balay } else { 25870754003eSLois Curfman McInnes /* Create and fill new matrix */ 25889566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 25899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, nrows, ncols)); 25909566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 25919566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(newmat, NULL)); 2592182d2002SSatish Balay } 2593182d2002SSatish Balay 2594182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 25959566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmat, &bv)); 25969566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(newmat, &ldb)); 2597182d2002SSatish Balay for (i = 0; i < ncols; i++) { 25986de62eeeSBarry Smith av = v + mat->lda * icol[i]; 2599ca15aa20SStefano Zampini for (j = 0; j < nrows; j++) bv[j] = av[irow[j]]; 2600bf5a80bcSToby Isaac bv += ldb; 26010754003eSLois Curfman McInnes } 26029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmat, &bv)); 2603182d2002SSatish Balay 2604182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 26059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 26069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 26070754003eSLois Curfman McInnes 26080754003eSLois Curfman McInnes /* Free work space */ 26099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 26109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &icol)); 2611182d2002SSatish Balay *B = newmat; 26123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26130754003eSLois Curfman McInnes } 26140754003eSLois Curfman McInnes 2615d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 2616d71ae5a4SJacob Faibussowitsch { 261713f74950SBarry Smith PetscInt i; 2618905e6a2fSBarry Smith 26193a40ed3dSBarry Smith PetscFunctionBegin; 262048a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(PetscCalloc1(n, B)); 2621905e6a2fSBarry Smith 262248a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(MatCreateSubMatrix_SeqDense(A, irow[i], icol[i], scall, &(*B)[i])); 26233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2624905e6a2fSBarry Smith } 2625905e6a2fSBarry Smith 2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqDense(Mat A, Mat B, MatStructure str) 2627d71ae5a4SJacob Faibussowitsch { 26284b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data; 2629ca15aa20SStefano Zampini const PetscScalar *va; 2630ca15aa20SStefano Zampini PetscScalar *vb; 2631d0f46423SBarry Smith PetscInt lda1 = a->lda, lda2 = b->lda, m = A->rmap->n, n = A->cmap->n, j; 26323a40ed3dSBarry Smith 26333a40ed3dSBarry Smith PetscFunctionBegin; 263433f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 263533f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 26369566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26383a40ed3dSBarry Smith } 2639aed4548fSBarry Smith PetscCheck(m == B->rmap->n && n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "size(B) != size(A)"); 26409566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &va)); 26419566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(B, &vb)); 2642a5ce6ee0Svictorle if (lda1 > m || lda2 > m) { 264348a46eb9SPierre Jolivet for (j = 0; j < n; j++) PetscCall(PetscArraycpy(vb + j * lda2, va + j * lda1, m)); 2644a5ce6ee0Svictorle } else { 26459566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(vb, va, A->rmap->n * A->cmap->n)); 2646a5ce6ee0Svictorle } 26479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(B, &vb)); 26489566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &va)); 26499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2652273d9f13SBarry Smith } 2653273d9f13SBarry Smith 2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqDense(Mat A) 2655d71ae5a4SJacob Faibussowitsch { 2656273d9f13SBarry Smith PetscFunctionBegin; 26579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 26589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 265948a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatSeqDenseSetPreallocation(A, NULL)); 26603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26614b0e389bSBarry Smith } 26624b0e389bSBarry Smith 2663d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatConjugate_SeqDense(Mat A) 2664d71ae5a4SJacob Faibussowitsch { 26654396437dSToby Isaac Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 266606c5243aSJose E. Roman PetscInt i, j; 26674396437dSToby Isaac PetscInt min = PetscMin(A->rmap->n, A->cmap->n); 2668ca15aa20SStefano Zampini PetscScalar *aa; 2669ba337c44SJed Brown 2670ba337c44SJed Brown PetscFunctionBegin; 26719566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 267206c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 267306c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscConj(aa[i + j * mat->lda]); 267406c5243aSJose E. Roman } 26759566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 26769371c9d4SSatish Balay if (mat->tau) 26779371c9d4SSatish Balay for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]); 26783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2679ba337c44SJed Brown } 2680ba337c44SJed Brown 2681d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatRealPart_SeqDense(Mat A) 2682d71ae5a4SJacob Faibussowitsch { 268306c5243aSJose E. Roman Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 268406c5243aSJose E. Roman PetscInt i, j; 2685ca15aa20SStefano Zampini PetscScalar *aa; 2686ba337c44SJed Brown 2687ba337c44SJed Brown PetscFunctionBegin; 26889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 268906c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 269006c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscRealPart(aa[i + j * mat->lda]); 269106c5243aSJose E. Roman } 26929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 26933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2694ba337c44SJed Brown } 2695ba337c44SJed Brown 2696d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 2697d71ae5a4SJacob Faibussowitsch { 269806c5243aSJose E. Roman Mat_SeqDense *mat = (Mat_SeqDense *)A->data; 269906c5243aSJose E. Roman PetscInt i, j; 2700ca15aa20SStefano Zampini PetscScalar *aa; 2701ba337c44SJed Brown 2702ba337c44SJed Brown PetscFunctionBegin; 27039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &aa)); 270406c5243aSJose E. Roman for (j = 0; j < A->cmap->n; j++) { 270506c5243aSJose E. Roman for (i = 0; i < A->rmap->n; i++) aa[i + j * mat->lda] = PetscImaginaryPart(aa[i + j * mat->lda]); 270606c5243aSJose E. Roman } 27079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &aa)); 27083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2709ba337c44SJed Brown } 2710284134d9SBarry Smith 2711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2712d71ae5a4SJacob Faibussowitsch { 2713d0f46423SBarry Smith PetscInt m = A->rmap->n, n = B->cmap->n; 271447d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 2715a9fe9ddaSSatish Balay 2716ee16a9a1SHong Zhang PetscFunctionBegin; 27179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 271847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 27199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 272047d993e7Ssuyashtn #endif 272147d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 272247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 272347d993e7Ssuyashtn #endif 27247a3c3d58SStefano Zampini if (!cisdense) { 27257a3c3d58SStefano Zampini PetscBool flg; 27267a3c3d58SStefano Zampini 27279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 27289566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 27297a3c3d58SStefano Zampini } 27309566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 27313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2732ee16a9a1SHong Zhang } 2733a9fe9ddaSSatish Balay 2734d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2735d71ae5a4SJacob Faibussowitsch { 27366718818eSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data, *b = (Mat_SeqDense *)B->data, *c = (Mat_SeqDense *)C->data; 27370805154bSBarry Smith PetscBLASInt m, n, k; 2738ca15aa20SStefano Zampini const PetscScalar *av, *bv; 2739ca15aa20SStefano Zampini PetscScalar *cv; 2740a9fe9ddaSSatish Balay PetscScalar _DOne = 1.0, _DZero = 0.0; 2741a9fe9ddaSSatish Balay 2742a9fe9ddaSSatish Balay PetscFunctionBegin; 27439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 27449566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 27459566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 27463ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 27479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 27489566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 27499566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2750792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 27519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 27529566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 27539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 27549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 27553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2756a9fe9ddaSSatish Balay } 2757a9fe9ddaSSatish Balay 2758d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2759d71ae5a4SJacob Faibussowitsch { 276069f65d41SStefano Zampini PetscInt m = A->rmap->n, n = B->rmap->n; 276147d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 276269f65d41SStefano Zampini 276369f65d41SStefano Zampini PetscFunctionBegin; 27649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 276547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 27669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 276747d993e7Ssuyashtn #endif 276847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 276947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 277047d993e7Ssuyashtn #endif 27717a3c3d58SStefano Zampini if (!cisdense) { 27727a3c3d58SStefano Zampini PetscBool flg; 27737a3c3d58SStefano Zampini 27749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 27759566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 27767a3c3d58SStefano Zampini } 27779566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 27783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277969f65d41SStefano Zampini } 278069f65d41SStefano Zampini 2781d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2782d71ae5a4SJacob Faibussowitsch { 278369f65d41SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 278469f65d41SStefano Zampini Mat_SeqDense *b = (Mat_SeqDense *)B->data; 278569f65d41SStefano Zampini Mat_SeqDense *c = (Mat_SeqDense *)C->data; 27866718818eSStefano Zampini const PetscScalar *av, *bv; 27876718818eSStefano Zampini PetscScalar *cv; 278869f65d41SStefano Zampini PetscBLASInt m, n, k; 278969f65d41SStefano Zampini PetscScalar _DOne = 1.0, _DZero = 0.0; 279069f65d41SStefano Zampini 279169f65d41SStefano Zampini PetscFunctionBegin; 27929566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 27939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 27949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->cmap->n, &k)); 27953ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 27969566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 27979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 27989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2799792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 28009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 28019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 28029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 28039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 28043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280569f65d41SStefano Zampini } 280669f65d41SStefano Zampini 2807d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 2808d71ae5a4SJacob Faibussowitsch { 2809d0f46423SBarry Smith PetscInt m = A->cmap->n, n = B->cmap->n; 281047d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 2811a9fe9ddaSSatish Balay 2812ee16a9a1SHong Zhang PetscFunctionBegin; 28139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, m, n)); 281447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 28159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSECUDA, "")); 281647d993e7Ssuyashtn #endif 281747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 281847d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATSEQDENSEHIP, "")); 281947d993e7Ssuyashtn #endif 28207a3c3d58SStefano Zampini if (!cisdense) { 28217a3c3d58SStefano Zampini PetscBool flg; 28227a3c3d58SStefano Zampini 28239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)B, ((PetscObject)A)->type_name, &flg)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetType(C, flg ? ((PetscObject)A)->type_name : MATDENSE)); 28257a3c3d58SStefano Zampini } 28269566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 28273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2828ee16a9a1SHong Zhang } 2829a9fe9ddaSSatish Balay 2830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A, Mat B, Mat C) 2831d71ae5a4SJacob Faibussowitsch { 2832a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2833a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense *)B->data; 2834a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense *)C->data; 28356718818eSStefano Zampini const PetscScalar *av, *bv; 28366718818eSStefano Zampini PetscScalar *cv; 28370805154bSBarry Smith PetscBLASInt m, n, k; 2838a9fe9ddaSSatish Balay PetscScalar _DOne = 1.0, _DZero = 0.0; 2839a9fe9ddaSSatish Balay 2840a9fe9ddaSSatish Balay PetscFunctionBegin; 28419566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->rmap->n, &m)); 28429566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(C->cmap->n, &n)); 28439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(A->rmap->n, &k)); 28443ba16761SJacob Faibussowitsch if (!m || !n || !k) PetscFunctionReturn(PETSC_SUCCESS); 28459566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &av)); 28469566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &bv)); 28479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &cv)); 2848792fecdfSBarry Smith PetscCallBLAS("BLASgemm", BLASgemm_("T", "N", &m, &n, &k, &_DOne, av, &a->lda, bv, &b->lda, &_DZero, cv, &c->lda)); 28499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &av)); 28509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &bv)); 28519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &cv)); 28529566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * m * n * k + 1.0 * m * n * (k - 1))); 28533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2854a9fe9ddaSSatish Balay } 2855985db425SBarry Smith 2856d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C) 2857d71ae5a4SJacob Faibussowitsch { 28584222ddf1SHong Zhang PetscFunctionBegin; 28594222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense; 28604222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 28613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28624222ddf1SHong Zhang } 28634222ddf1SHong Zhang 2864d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C) 2865d71ae5a4SJacob Faibussowitsch { 28664222ddf1SHong Zhang PetscFunctionBegin; 28674222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense; 28684222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 28693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28704222ddf1SHong Zhang } 28714222ddf1SHong Zhang 2872d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C) 2873d71ae5a4SJacob Faibussowitsch { 28744222ddf1SHong Zhang PetscFunctionBegin; 28754222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense; 28764222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 28773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28784222ddf1SHong Zhang } 28794222ddf1SHong Zhang 2880d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C) 2881d71ae5a4SJacob Faibussowitsch { 28824222ddf1SHong Zhang Mat_Product *product = C->product; 28834222ddf1SHong Zhang 28844222ddf1SHong Zhang PetscFunctionBegin; 28854222ddf1SHong Zhang switch (product->type) { 2886d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2887d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AB(C)); 2888d71ae5a4SJacob Faibussowitsch break; 2889d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2890d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_AtB(C)); 2891d71ae5a4SJacob Faibussowitsch break; 2892d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2893d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_ABt(C)); 2894d71ae5a4SJacob Faibussowitsch break; 2895d71ae5a4SJacob Faibussowitsch default: 2896d71ae5a4SJacob Faibussowitsch break; 28974222ddf1SHong Zhang } 28983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28994222ddf1SHong Zhang } 29004222ddf1SHong Zhang 2901d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMax_SeqDense(Mat A, Vec v, PetscInt idx[]) 2902d71ae5a4SJacob Faibussowitsch { 2903985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2904d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 2905985db425SBarry Smith PetscScalar *x; 2906ca15aa20SStefano Zampini const PetscScalar *aa; 2907985db425SBarry Smith 2908985db425SBarry Smith PetscFunctionBegin; 290928b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29109566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29119566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 29129566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 291308401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2914985db425SBarry Smith for (i = 0; i < m; i++) { 29159371c9d4SSatish Balay x[i] = aa[i]; 29169371c9d4SSatish Balay if (idx) idx[i] = 0; 2917985db425SBarry Smith for (j = 1; j < n; j++) { 29189371c9d4SSatish Balay if (PetscRealPart(x[i]) < PetscRealPart(aa[i + a->lda * j])) { 29199371c9d4SSatish Balay x[i] = aa[i + a->lda * j]; 29209371c9d4SSatish Balay if (idx) idx[i] = j; 29219371c9d4SSatish Balay } 2922985db425SBarry Smith } 2923985db425SBarry Smith } 29249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2927985db425SBarry Smith } 2928985db425SBarry Smith 2929d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A, Vec v, PetscInt idx[]) 2930d71ae5a4SJacob Faibussowitsch { 2931985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2932d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 2933985db425SBarry Smith PetscScalar *x; 2934985db425SBarry Smith PetscReal atmp; 2935ca15aa20SStefano Zampini const PetscScalar *aa; 2936985db425SBarry Smith 2937985db425SBarry Smith PetscFunctionBegin; 293828b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29399566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29409566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 29419566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 294208401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2943985db425SBarry Smith for (i = 0; i < m; i++) { 29449189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 2945985db425SBarry Smith for (j = 1; j < n; j++) { 2946ca15aa20SStefano Zampini atmp = PetscAbsScalar(aa[i + a->lda * j]); 29479371c9d4SSatish Balay if (PetscAbsScalar(x[i]) < atmp) { 29489371c9d4SSatish Balay x[i] = atmp; 29499371c9d4SSatish Balay if (idx) idx[i] = j; 29509371c9d4SSatish Balay } 2951985db425SBarry Smith } 2952985db425SBarry Smith } 29539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2956985db425SBarry Smith } 2957985db425SBarry Smith 2958d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetRowMin_SeqDense(Mat A, Vec v, PetscInt idx[]) 2959d71ae5a4SJacob Faibussowitsch { 2960985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 2961d0f46423SBarry Smith PetscInt i, j, m = A->rmap->n, n = A->cmap->n, p; 2962985db425SBarry Smith PetscScalar *x; 2963ca15aa20SStefano Zampini const PetscScalar *aa; 2964985db425SBarry Smith 2965985db425SBarry Smith PetscFunctionBegin; 296628b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 29689566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29699566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &p)); 297008401ef6SPierre Jolivet PetscCheck(p == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 2971985db425SBarry Smith for (i = 0; i < m; i++) { 29729371c9d4SSatish Balay x[i] = aa[i]; 29739371c9d4SSatish Balay if (idx) idx[i] = 0; 2974985db425SBarry Smith for (j = 1; j < n; j++) { 29759371c9d4SSatish Balay if (PetscRealPart(x[i]) > PetscRealPart(aa[i + a->lda * j])) { 29769371c9d4SSatish Balay x[i] = aa[i + a->lda * j]; 29779371c9d4SSatish Balay if (idx) idx[i] = j; 29789371c9d4SSatish Balay } 2979985db425SBarry Smith } 2980985db425SBarry Smith } 29819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29829566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2984985db425SBarry Smith } 2985985db425SBarry Smith 2986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnVector_SeqDense(Mat A, Vec v, PetscInt col) 2987d71ae5a4SJacob Faibussowitsch { 29888d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense *)A->data; 29898d0534beSBarry Smith PetscScalar *x; 2990ca15aa20SStefano Zampini const PetscScalar *aa; 29918d0534beSBarry Smith 29928d0534beSBarry Smith PetscFunctionBegin; 299328b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 29949566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &aa)); 29959566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 29969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(x, aa + col * a->lda, A->rmap->n)); 29979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 29989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &aa)); 29993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30008d0534beSBarry Smith } 30018d0534beSBarry Smith 3002d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat A, PetscInt type, PetscReal *reductions) 3003d71ae5a4SJacob Faibussowitsch { 30040716a85fSBarry Smith PetscInt i, j, m, n; 30051683a169SBarry Smith const PetscScalar *a; 30060716a85fSBarry Smith 30070716a85fSBarry Smith PetscFunctionBegin; 30089566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 30099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(reductions, n)); 30109566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &a)); 3011857cbf51SRichard Tran Mills if (type == NORM_2) { 30120716a85fSBarry Smith for (i = 0; i < n; i++) { 3013ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j] * a[j]); 301416cd844bSPierre Jolivet a = PetscSafePointerPlusOffset(a, m); 30150716a85fSBarry Smith } 3016857cbf51SRichard Tran Mills } else if (type == NORM_1) { 30170716a85fSBarry Smith for (i = 0; i < n; i++) { 3018ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscAbsScalar(a[j]); 301916cd844bSPierre Jolivet a = PetscSafePointerPlusOffset(a, m); 30200716a85fSBarry Smith } 3021857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 30220716a85fSBarry Smith for (i = 0; i < n; i++) { 3023ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] = PetscMax(PetscAbsScalar(a[j]), reductions[i]); 302416cd844bSPierre Jolivet a = PetscSafePointerPlusOffset(a, m); 30250716a85fSBarry Smith } 3026857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 3027a873a8cdSSam Reynolds for (i = 0; i < n; i++) { 3028ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscRealPart(a[j]); 302916cd844bSPierre Jolivet a = PetscSafePointerPlusOffset(a, m); 3030a873a8cdSSam Reynolds } 3031857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 3032857cbf51SRichard Tran Mills for (i = 0; i < n; i++) { 3033ad540459SPierre Jolivet for (j = 0; j < m; j++) reductions[i] += PetscImaginaryPart(a[j]); 303416cd844bSPierre Jolivet a = PetscSafePointerPlusOffset(a, m); 3035857cbf51SRichard Tran Mills } 3036857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 30379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &a)); 3038857cbf51SRichard Tran Mills if (type == NORM_2) { 3039a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 3040857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 3041a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 30420716a85fSBarry Smith } 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30440716a85fSBarry Smith } 30450716a85fSBarry Smith 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetRandom_SeqDense(Mat x, PetscRandom rctx) 3047d71ae5a4SJacob Faibussowitsch { 304873a71a0fSBarry Smith PetscScalar *a; 3049637a0070SStefano Zampini PetscInt lda, m, n, i, j; 305073a71a0fSBarry Smith 305173a71a0fSBarry Smith PetscFunctionBegin; 30529566063dSJacob Faibussowitsch PetscCall(MatGetSize(x, &m, &n)); 30539566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(x, &lda)); 30543faff063SStefano Zampini PetscCall(MatDenseGetArrayWrite(x, &a)); 3055637a0070SStefano Zampini for (j = 0; j < n; j++) { 305648a46eb9SPierre Jolivet for (i = 0; i < m; i++) PetscCall(PetscRandomGetValue(rctx, a + j * lda + i)); 305773a71a0fSBarry Smith } 30583faff063SStefano Zampini PetscCall(MatDenseRestoreArrayWrite(x, &a)); 30593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306073a71a0fSBarry Smith } 306173a71a0fSBarry Smith 3062d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A, PetscBool *missing, PetscInt *d) 3063d71ae5a4SJacob Faibussowitsch { 30643b49f96aSBarry Smith PetscFunctionBegin; 30653b49f96aSBarry Smith *missing = PETSC_FALSE; 30663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30673b49f96aSBarry Smith } 306873a71a0fSBarry Smith 3069ca15aa20SStefano Zampini /* vals is not const */ 3070d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A, PetscInt col, PetscScalar **vals) 3071d71ae5a4SJacob Faibussowitsch { 307286aefd0dSHong Zhang Mat_SeqDense *a = (Mat_SeqDense *)A->data; 3073ca15aa20SStefano Zampini PetscScalar *v; 307486aefd0dSHong Zhang 307586aefd0dSHong Zhang PetscFunctionBegin; 307628b400f6SJacob Faibussowitsch PetscCheck(!A->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 30779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 3078ca15aa20SStefano Zampini *vals = v + col * a->lda; 30799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 30803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 308186aefd0dSHong Zhang } 308286aefd0dSHong Zhang 3083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A, PetscScalar **vals) 3084d71ae5a4SJacob Faibussowitsch { 308586aefd0dSHong Zhang PetscFunctionBegin; 3086742765d3SMatthew Knepley if (vals) *vals = NULL; /* user cannot accidentally use the array later */ 30873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 308886aefd0dSHong Zhang } 3089abc3b08eSStefano Zampini 3090a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 3091905e6a2fSBarry Smith MatGetRow_SeqDense, 3092905e6a2fSBarry Smith MatRestoreRow_SeqDense, 3093905e6a2fSBarry Smith MatMult_SeqDense, 309497304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 30957c922b88SBarry Smith MatMultTranspose_SeqDense, 30967c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 3097f4259b30SLisandro Dalcin NULL, 3098f4259b30SLisandro Dalcin NULL, 3099f4259b30SLisandro Dalcin NULL, 3100f4259b30SLisandro Dalcin /* 10*/ NULL, 3101905e6a2fSBarry Smith MatLUFactor_SeqDense, 3102905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 310341f059aeSBarry Smith MatSOR_SeqDense, 3104ec8511deSBarry Smith MatTranspose_SeqDense, 310597304618SKris Buschelman /* 15*/ MatGetInfo_SeqDense, 3106905e6a2fSBarry Smith MatEqual_SeqDense, 3107905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 3108905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 3109905e6a2fSBarry Smith MatNorm_SeqDense, 3110b7103cf4SPierre Jolivet /* 20*/ NULL, 3111b7103cf4SPierre Jolivet NULL, 3112905e6a2fSBarry Smith MatSetOption_SeqDense, 3113905e6a2fSBarry Smith MatZeroEntries_SeqDense, 3114d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqDense, 3115f4259b30SLisandro Dalcin NULL, 3116f4259b30SLisandro Dalcin NULL, 3117f4259b30SLisandro Dalcin NULL, 3118f4259b30SLisandro Dalcin NULL, 31194994cf47SJed Brown /* 29*/ MatSetUp_SeqDense, 3120f4259b30SLisandro Dalcin NULL, 3121f4259b30SLisandro Dalcin NULL, 3122f4259b30SLisandro Dalcin NULL, 3123f4259b30SLisandro Dalcin NULL, 3124d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqDense, 3125f4259b30SLisandro Dalcin NULL, 3126f4259b30SLisandro Dalcin NULL, 3127f4259b30SLisandro Dalcin NULL, 3128f4259b30SLisandro Dalcin NULL, 3129d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqDense, 31307dae84e0SHong Zhang MatCreateSubMatrices_SeqDense, 3131f4259b30SLisandro Dalcin NULL, 31324b0e389bSBarry Smith MatGetValues_SeqDense, 3133a5ae1ecdSBarry Smith MatCopy_SeqDense, 3134d519adbfSMatthew Knepley /* 44*/ MatGetRowMax_SeqDense, 3135a5ae1ecdSBarry Smith MatScale_SeqDense, 31362f605a99SJose E. Roman MatShift_SeqDense, 3137f4259b30SLisandro Dalcin NULL, 31383f49a652SStefano Zampini MatZeroRowsColumns_SeqDense, 313973a71a0fSBarry Smith /* 49*/ MatSetRandom_SeqDense, 3140f4259b30SLisandro Dalcin NULL, 3141f4259b30SLisandro Dalcin NULL, 3142f4259b30SLisandro Dalcin NULL, 3143f4259b30SLisandro Dalcin NULL, 3144f4259b30SLisandro Dalcin /* 54*/ NULL, 3145f4259b30SLisandro Dalcin NULL, 3146f4259b30SLisandro Dalcin NULL, 3147f4259b30SLisandro Dalcin NULL, 3148f4259b30SLisandro Dalcin NULL, 3149023c16fcSToby Isaac /* 59*/ MatCreateSubMatrix_SeqDense, 3150e03a110bSBarry Smith MatDestroy_SeqDense, 3151e03a110bSBarry Smith MatView_SeqDense, 3152f4259b30SLisandro Dalcin NULL, 3153f4259b30SLisandro Dalcin NULL, 3154f4259b30SLisandro Dalcin /* 64*/ NULL, 3155f4259b30SLisandro Dalcin NULL, 3156f4259b30SLisandro Dalcin NULL, 3157f4259b30SLisandro Dalcin NULL, 3158f4259b30SLisandro Dalcin NULL, 3159d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqDense, 3160f4259b30SLisandro Dalcin NULL, 3161f4259b30SLisandro Dalcin NULL, 3162f4259b30SLisandro Dalcin NULL, 3163f4259b30SLisandro Dalcin NULL, 3164f4259b30SLisandro Dalcin /* 74*/ NULL, 3165f4259b30SLisandro Dalcin NULL, 3166f4259b30SLisandro Dalcin NULL, 3167f4259b30SLisandro Dalcin NULL, 3168f4259b30SLisandro Dalcin NULL, 3169f4259b30SLisandro Dalcin /* 79*/ NULL, 3170f4259b30SLisandro Dalcin NULL, 3171f4259b30SLisandro Dalcin NULL, 3172f4259b30SLisandro Dalcin NULL, 31735bba2384SShri Abhyankar /* 83*/ MatLoad_SeqDense, 3174637a0070SStefano Zampini MatIsSymmetric_SeqDense, 31751cbb95d3SBarry Smith MatIsHermitian_SeqDense, 3176f4259b30SLisandro Dalcin NULL, 3177f4259b30SLisandro Dalcin NULL, 3178f4259b30SLisandro Dalcin NULL, 3179f4259b30SLisandro Dalcin /* 89*/ NULL, 3180f4259b30SLisandro Dalcin NULL, 3181a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 3182f4259b30SLisandro Dalcin NULL, 3183f4259b30SLisandro Dalcin NULL, 3184f4259b30SLisandro Dalcin /* 94*/ NULL, 3185f4259b30SLisandro Dalcin NULL, 3186f4259b30SLisandro Dalcin NULL, 318769f65d41SStefano Zampini MatMatTransposeMultNumeric_SeqDense_SeqDense, 3188f4259b30SLisandro Dalcin NULL, 31894222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_SeqDense, 3190f4259b30SLisandro Dalcin NULL, 3191f4259b30SLisandro Dalcin NULL, 3192ba337c44SJed Brown MatConjugate_SeqDense, 3193f4259b30SLisandro Dalcin NULL, 3194f4259b30SLisandro Dalcin /*104*/ NULL, 3195ba337c44SJed Brown MatRealPart_SeqDense, 3196ba337c44SJed Brown MatImaginaryPart_SeqDense, 3197f4259b30SLisandro Dalcin NULL, 3198f4259b30SLisandro Dalcin NULL, 3199f4259b30SLisandro Dalcin /*109*/ NULL, 3200f4259b30SLisandro Dalcin NULL, 32018d0534beSBarry Smith MatGetRowMin_SeqDense, 3202aabbc4fbSShri Abhyankar MatGetColumnVector_SeqDense, 32033b49f96aSBarry Smith MatMissingDiagonal_SeqDense, 3204f4259b30SLisandro Dalcin /*114*/ NULL, 3205f4259b30SLisandro Dalcin NULL, 3206f4259b30SLisandro Dalcin NULL, 3207f4259b30SLisandro Dalcin NULL, 3208f4259b30SLisandro Dalcin NULL, 3209f4259b30SLisandro Dalcin /*119*/ NULL, 3210f4259b30SLisandro Dalcin NULL, 3211459e8d23SBlanca Mellado Pinto MatMultHermitianTranspose_SeqDense, 3212459e8d23SBlanca Mellado Pinto MatMultHermitianTransposeAdd_SeqDense, 3213f4259b30SLisandro Dalcin NULL, 3214f4259b30SLisandro Dalcin /*124*/ NULL, 3215a873a8cdSSam Reynolds MatGetColumnReductions_SeqDense, 3216f4259b30SLisandro Dalcin NULL, 3217f4259b30SLisandro Dalcin NULL, 3218f4259b30SLisandro Dalcin NULL, 3219f4259b30SLisandro Dalcin /*129*/ NULL, 3220f4259b30SLisandro Dalcin NULL, 3221f4259b30SLisandro Dalcin NULL, 322275648e8dSHong Zhang MatTransposeMatMultNumeric_SeqDense_SeqDense, 3223f4259b30SLisandro Dalcin NULL, 3224f4259b30SLisandro Dalcin /*134*/ NULL, 3225f4259b30SLisandro Dalcin NULL, 3226f4259b30SLisandro Dalcin NULL, 3227f4259b30SLisandro Dalcin NULL, 3228f4259b30SLisandro Dalcin NULL, 3229f4259b30SLisandro Dalcin /*139*/ NULL, 3230f4259b30SLisandro Dalcin NULL, 3231f4259b30SLisandro Dalcin NULL, 3232f4259b30SLisandro Dalcin NULL, 3233f4259b30SLisandro Dalcin NULL, 32344222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_SeqDense, 3235f4259b30SLisandro Dalcin /*145*/ NULL, 3236f4259b30SLisandro Dalcin NULL, 323799a7f59eSMark Adams NULL, 323899a7f59eSMark Adams NULL, 32397fb60732SBarry Smith NULL, 3240dec0b466SHong Zhang /*150*/ NULL, 3241eede4a3fSMark Adams NULL, 32424cc2b5b5SPierre Jolivet NULL, 324342ce410bSJunchao Zhang NULL, 324442ce410bSJunchao Zhang NULL, 3245fe1fc275SAlexander /*155*/ NULL, 3246dec0b466SHong Zhang NULL}; 324790ace30eSBarry Smith 32485d83a8b1SBarry Smith /*@ 324911a5261eSBarry Smith MatCreateSeqDense - Creates a `MATSEQDENSE` that 3250fb850c59SBarry Smith is stored in column major order (the usual Fortran format). 3251289bc588SBarry Smith 3252d083f849SBarry Smith Collective 3253db81eaa0SLois Curfman McInnes 325420563c6bSBarry Smith Input Parameters: 325511a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 32560c775827SLois Curfman McInnes . m - number of rows 325718f449edSLois Curfman McInnes . n - number of columns 32582ef1f0ffSBarry Smith - data - optional location of matrix data in column major order. Use `NULL` for PETSc 3259dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 326020563c6bSBarry Smith 326120563c6bSBarry Smith Output Parameter: 326244cd7ae7SLois Curfman McInnes . A - the matrix 326320563c6bSBarry Smith 32642ef1f0ffSBarry Smith Level: intermediate 32652ef1f0ffSBarry Smith 326611a5261eSBarry Smith Note: 326718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 326818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 32692ef1f0ffSBarry Smith set `data` = `NULL`. 327018f449edSLois Curfman McInnes 3271fb850c59SBarry Smith Developer Note: 3272fb850c59SBarry Smith Many of the matrix operations for this variant use the BLAS and LAPACK routines. 3273fb850c59SBarry Smith 32741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()` 327520563c6bSBarry Smith @*/ 32765d83a8b1SBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscScalar data[], Mat *A) 3277d71ae5a4SJacob Faibussowitsch { 32783a40ed3dSBarry Smith PetscFunctionBegin; 32799566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 32809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 32819566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQDENSE)); 32829566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 32833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3284273d9f13SBarry Smith } 3285273d9f13SBarry Smith 32865d83a8b1SBarry Smith /*@ 328711a5261eSBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements of a `MATSEQDENSE` matrix 3288273d9f13SBarry Smith 3289d083f849SBarry Smith Collective 3290273d9f13SBarry Smith 3291273d9f13SBarry Smith Input Parameters: 32921c4f3114SJed Brown + B - the matrix 32932ef1f0ffSBarry Smith - data - the array (or `NULL`) 32942ef1f0ffSBarry Smith 32952ef1f0ffSBarry Smith Level: intermediate 3296273d9f13SBarry Smith 329711a5261eSBarry Smith Note: 3298273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 3299273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 3300284134d9SBarry Smith need not call this routine. 3301273d9f13SBarry Smith 33021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreate()`, `MatCreateDense()`, `MatSetValues()`, `MatDenseSetLDA()` 3303273d9f13SBarry Smith @*/ 3304d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation(Mat B, PetscScalar data[]) 3305d71ae5a4SJacob Faibussowitsch { 3306a23d5eceSKris Buschelman PetscFunctionBegin; 3307d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 3308cac4c232SBarry Smith PetscTryMethod(B, "MatSeqDenseSetPreallocation_C", (Mat, PetscScalar[]), (B, data)); 33093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3310a23d5eceSKris Buschelman } 3311a23d5eceSKris Buschelman 3312d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B, PetscScalar *data) 3313d71ae5a4SJacob Faibussowitsch { 3314ad16ce7aSStefano Zampini Mat_SeqDense *b = (Mat_SeqDense *)B->data; 3315273d9f13SBarry Smith 3316273d9f13SBarry Smith PetscFunctionBegin; 331728b400f6SJacob Faibussowitsch PetscCheck(!b->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3318273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 3319a868139aSShri Abhyankar 33209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 33219566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 332234ef9618SShri Abhyankar 33236497c311SBarry Smith if (b->lda <= 0) PetscCall(PetscBLASIntCast(B->rmap->n, &b->lda)); 332486d161a7SShri Abhyankar 33259e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 33269566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 33279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((size_t)b->lda * B->cmap->n, &b->v)); 33282205254eSKarl Rupp 33299e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 3330273d9f13SBarry Smith } else { /* user-allocated storage */ 33319566063dSJacob Faibussowitsch if (!b->user_alloc) PetscCall(PetscFree(b->v)); 3332273d9f13SBarry Smith b->v = data; 3333273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 3334273d9f13SBarry Smith } 33350450473dSBarry Smith B->assembled = PETSC_TRUE; 33363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3337273d9f13SBarry Smith } 3338273d9f13SBarry Smith 333965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 3340d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 3341d71ae5a4SJacob Faibussowitsch { 3342d77f618aSHong Zhang Mat mat_elemental; 33431683a169SBarry Smith const PetscScalar *array; 33441683a169SBarry Smith PetscScalar *v_colwise; 3345d77f618aSHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, i, j, k, *rows, *cols; 3346d77f618aSHong Zhang 33478baccfbdSHong Zhang PetscFunctionBegin; 33489566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(M * N, &v_colwise, M, &rows, N, &cols)); 33499566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &array)); 3350d77f618aSHong Zhang /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */ 3351d77f618aSHong Zhang k = 0; 3352d77f618aSHong Zhang for (j = 0; j < N; j++) { 3353d77f618aSHong Zhang cols[j] = j; 3354ad540459SPierre Jolivet for (i = 0; i < M; i++) v_colwise[j * M + i] = array[k++]; 3355d77f618aSHong Zhang } 3356ad540459SPierre Jolivet for (i = 0; i < M; i++) rows[i] = i; 33579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &array)); 3358d77f618aSHong Zhang 33599566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 33609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 33619566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 33629566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 3363d77f618aSHong Zhang 3364d77f618aSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 33659566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, M, rows, N, cols, v_colwise, ADD_VALUES)); 33669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 33679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 33689566063dSJacob Faibussowitsch PetscCall(PetscFree3(v_colwise, rows, cols)); 3369d77f618aSHong Zhang 3370511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 33719566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 3372d77f618aSHong Zhang } else { 3373d77f618aSHong Zhang *newmat = mat_elemental; 3374d77f618aSHong Zhang } 33753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33768baccfbdSHong Zhang } 337765b80a83SHong Zhang #endif 33788baccfbdSHong Zhang 3379d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseSetLDA_SeqDense(Mat B, PetscInt lda) 3380d71ae5a4SJacob Faibussowitsch { 33811b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense *)B->data; 33827422da62SJose E. Roman PetscBool data; 338321a2c019SBarry Smith 33841b807ce4Svictorle PetscFunctionBegin; 3385835f2295SStefano Zampini data = (B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE; 3386aed4548fSBarry Smith PetscCheck(b->user_alloc || !data || b->lda == lda, PETSC_COMM_SELF, PETSC_ERR_ORDER, "LDA cannot be changed after allocation of internal storage"); 338708401ef6SPierre Jolivet PetscCheck(lda >= B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "LDA %" PetscInt_FMT " must be at least matrix dimension %" PetscInt_FMT, lda, B->rmap->n); 33886497c311SBarry Smith PetscCall(PetscBLASIntCast(lda, &b->lda)); 33893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33901b807ce4Svictorle } 33911b807ce4Svictorle 3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3393d71ae5a4SJacob Faibussowitsch { 3394d528f656SJakub Kruzik PetscFunctionBegin; 33959566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIDense(comm, inmat, n, scall, outmat)); 33963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3397d528f656SJakub Kruzik } 3398d528f656SJakub Kruzik 3399d16ceb75SStefano Zampini PetscErrorCode MatDenseCreateColumnVec_Private(Mat A, Vec *v) 3400d16ceb75SStefano Zampini { 3401d16ceb75SStefano Zampini PetscBool isstd, iskok, iscuda, iship; 3402d16ceb75SStefano Zampini PetscMPIInt size; 3403d16ceb75SStefano Zampini #if PetscDefined(HAVE_CUDA) || PetscDefined(HAVE_HIP) 3404d16ceb75SStefano Zampini /* we pass the data of A, to prevent allocating needless GPU memory the first time VecCUPMPlaceArray is called. */ 3405d16ceb75SStefano Zampini const PetscScalar *a; 3406d16ceb75SStefano Zampini #endif 3407d16ceb75SStefano Zampini 3408d16ceb75SStefano Zampini PetscFunctionBegin; 3409d16ceb75SStefano Zampini *v = NULL; 3410d16ceb75SStefano Zampini PetscCall(PetscStrcmpAny(A->defaultvectype, &isstd, VECSTANDARD, VECSEQ, VECMPI, "")); 3411d16ceb75SStefano Zampini PetscCall(PetscStrcmpAny(A->defaultvectype, &iskok, VECKOKKOS, VECSEQKOKKOS, VECMPIKOKKOS, "")); 3412d16ceb75SStefano Zampini PetscCall(PetscStrcmpAny(A->defaultvectype, &iscuda, VECCUDA, VECSEQCUDA, VECMPICUDA, "")); 3413d16ceb75SStefano Zampini PetscCall(PetscStrcmpAny(A->defaultvectype, &iship, VECHIP, VECSEQHIP, VECMPIHIP, "")); 3414d16ceb75SStefano Zampini PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 3415d16ceb75SStefano Zampini if (isstd) { 3416d16ceb75SStefano Zampini if (size > 1) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, v)); 3417d16ceb75SStefano Zampini else PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, v)); 3418d16ceb75SStefano Zampini } else if (iskok) { 3419d16ceb75SStefano Zampini PetscCheck(PetscDefined(HAVE_KOKKOS_KERNELS), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using KOKKOS kernels support"); 3420d16ceb75SStefano Zampini #if PetscDefined(HAVE_KOKKOS_KERNELS) 3421d16ceb75SStefano Zampini if (size > 1) PetscCall(VecCreateMPIKokkosWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, v)); 3422d16ceb75SStefano Zampini else PetscCall(VecCreateSeqKokkosWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, v)); 3423d16ceb75SStefano Zampini #endif 3424d16ceb75SStefano Zampini } else if (iscuda) { 3425d16ceb75SStefano Zampini PetscCheck(PetscDefined(HAVE_CUDA), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using CUDA support"); 3426d16ceb75SStefano Zampini #if PetscDefined(HAVE_CUDA) 3427d16ceb75SStefano Zampini PetscCall(MatDenseCUDAGetArrayRead(A, &a)); 3428d16ceb75SStefano Zampini if (size > 1) PetscCall(VecCreateMPICUDAWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, a, v)); 3429d16ceb75SStefano Zampini else PetscCall(VecCreateSeqCUDAWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, a, v)); 3430d16ceb75SStefano Zampini #endif 3431d16ceb75SStefano Zampini } else if (iship) { 3432d16ceb75SStefano Zampini PetscCheck(PetscDefined(HAVE_HIP), PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Reconfigure using HIP support"); 3433d16ceb75SStefano Zampini #if PetscDefined(HAVE_HIP) 3434d16ceb75SStefano Zampini PetscCall(MatDenseHIPGetArrayRead(A, &a)); 3435d16ceb75SStefano Zampini if (size > 1) PetscCall(VecCreateMPIHIPWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, a, v)); 3436d16ceb75SStefano Zampini else PetscCall(VecCreateSeqHIPWithArrays(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, NULL, a, v)); 3437d16ceb75SStefano Zampini #endif 3438d16ceb75SStefano Zampini } 3439d16ceb75SStefano Zampini PetscCheck(*v, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not coded for type %s", A->defaultvectype); 3440d16ceb75SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 3441d16ceb75SStefano Zampini } 3442d16ceb75SStefano Zampini 3443d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A, PetscInt col, Vec *v) 3444d71ae5a4SJacob Faibussowitsch { 34456947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34466947451fSStefano Zampini 34476947451fSStefano Zampini PetscFunctionBegin; 344828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 344928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3450d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 34516947451fSStefano Zampini a->vecinuse = col + 1; 34529566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, (PetscScalar **)&a->ptrinuse)); 34539566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)a->lda)); 34546947451fSStefano Zampini *v = a->cvec; 34553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34566947451fSStefano Zampini } 34576947451fSStefano Zampini 3458d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A, PetscInt col, Vec *v) 3459d71ae5a4SJacob Faibussowitsch { 34606947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34616947451fSStefano Zampini 34626947451fSStefano Zampini PetscFunctionBegin; 346328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 346428b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 34654186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 34666947451fSStefano Zampini a->vecinuse = 0; 34679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, (PetscScalar **)&a->ptrinuse)); 34689566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 346975f6d85dSStefano Zampini if (v) *v = NULL; 34703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34716947451fSStefano Zampini } 34726947451fSStefano Zampini 3473d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v) 3474d71ae5a4SJacob Faibussowitsch { 34756947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34766947451fSStefano Zampini 34776947451fSStefano Zampini PetscFunctionBegin; 347828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 347928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3480d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 34816947451fSStefano Zampini a->vecinuse = col + 1; 34829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(A, &a->ptrinuse)); 34838e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)a->lda))); 34849566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 34856947451fSStefano Zampini *v = a->cvec; 34863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34876947451fSStefano Zampini } 34886947451fSStefano Zampini 3489d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A, PetscInt col, Vec *v) 3490d71ae5a4SJacob Faibussowitsch { 34916947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 34926947451fSStefano Zampini 34936947451fSStefano Zampini PetscFunctionBegin; 349428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 349528b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 34964186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 34976947451fSStefano Zampini a->vecinuse = 0; 34989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(A, &a->ptrinuse)); 34999566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 35009566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 350175f6d85dSStefano Zampini if (v) *v = NULL; 35023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35036947451fSStefano Zampini } 35046947451fSStefano Zampini 3505d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v) 3506d71ae5a4SJacob Faibussowitsch { 35076947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35086947451fSStefano Zampini 35096947451fSStefano Zampini PetscFunctionBegin; 351028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 351128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3512d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 35136947451fSStefano Zampini a->vecinuse = col + 1; 35149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(A, (PetscScalar **)&a->ptrinuse)); 35158e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)a->lda))); 35166947451fSStefano Zampini *v = a->cvec; 35173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35186947451fSStefano Zampini } 35196947451fSStefano Zampini 3520d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A, PetscInt col, Vec *v) 3521d71ae5a4SJacob Faibussowitsch { 35226947451fSStefano Zampini Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35236947451fSStefano Zampini 35246947451fSStefano Zampini PetscFunctionBegin; 352528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 352628b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 35274186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 35286947451fSStefano Zampini a->vecinuse = 0; 35299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(A, (PetscScalar **)&a->ptrinuse)); 35309566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 353175f6d85dSStefano Zampini if (v) *v = NULL; 35323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35336947451fSStefano Zampini } 35346947451fSStefano Zampini 3535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 3536d71ae5a4SJacob Faibussowitsch { 35375ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35385ea7661aSPierre Jolivet 35395ea7661aSPierre Jolivet PetscFunctionBegin; 354028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 354128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 3542a2748737SPierre Jolivet if (a->cmat && (cend - cbegin != a->cmat->cmap->N || rend - rbegin != a->cmat->rmap->N)) PetscCall(MatDestroy(&a->cmat)); 35435ea7661aSPierre Jolivet if (!a->cmat) { 35448e3a54c0SPierre Jolivet PetscCall(MatCreateDense(PetscObjectComm((PetscObject)A), rend - rbegin, PETSC_DECIDE, rend - rbegin, cend - cbegin, PetscSafePointerPlusOffset(a->v, rbegin + (size_t)cbegin * a->lda), &a->cmat)); 35455ea7661aSPierre Jolivet } else { 35468e3a54c0SPierre Jolivet PetscCall(MatDensePlaceArray(a->cmat, PetscSafePointerPlusOffset(a->v, rbegin + (size_t)cbegin * a->lda))); 35475ea7661aSPierre Jolivet } 35489566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->cmat, a->lda)); 35495ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 35505ea7661aSPierre Jolivet *v = a->cmat; 355147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 355275f6d85dSStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 355375f6d85dSStefano Zampini #endif 35543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35555ea7661aSPierre Jolivet } 35565ea7661aSPierre Jolivet 3557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A, Mat *v) 3558d71ae5a4SJacob Faibussowitsch { 35595ea7661aSPierre Jolivet Mat_SeqDense *a = (Mat_SeqDense *)A->data; 35605ea7661aSPierre Jolivet 35615ea7661aSPierre Jolivet PetscFunctionBegin; 356228b400f6SJacob Faibussowitsch PetscCheck(a->matinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 356328b400f6SJacob Faibussowitsch PetscCheck(a->cmat, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column matrix"); 356408401ef6SPierre Jolivet PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 35655ea7661aSPierre Jolivet a->matinuse = 0; 35669566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->cmat)); 3567742765d3SMatthew Knepley if (v) *v = NULL; 356847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 35693faff063SStefano Zampini A->offloadmask = PETSC_OFFLOAD_CPU; 35703faff063SStefano Zampini #endif 35713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35725ea7661aSPierre Jolivet } 35735ea7661aSPierre Jolivet 35740bad9183SKris Buschelman /*MC 3575fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 35760bad9183SKris Buschelman 35772ef1f0ffSBarry Smith Options Database Key: 357811a5261eSBarry Smith . -mat_type seqdense - sets the matrix type to `MATSEQDENSE` during a call to `MatSetFromOptions()` 35790bad9183SKris Buschelman 35800bad9183SKris Buschelman Level: beginner 35810bad9183SKris Buschelman 35821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MatCreateSeqDense()` 35830bad9183SKris Buschelman M*/ 3584d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreate_SeqDense(Mat B) 3585d71ae5a4SJacob Faibussowitsch { 3586273d9f13SBarry Smith Mat_SeqDense *b; 35877c334f02SBarry Smith PetscMPIInt size; 3588273d9f13SBarry Smith 3589273d9f13SBarry Smith PetscFunctionBegin; 35909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 359108401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1"); 359255659b69SBarry Smith 35934dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 359444cd7ae7SLois Curfman McInnes B->data = (void *)b; 3595aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 359618f449edSLois Curfman McInnes 3597273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 35984e220ebcSLois Curfman McInnes 35999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatQRFactor_C", MatQRFactor_SeqDense)); 36009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetLDA_C", MatDenseGetLDA_SeqDense)); 36019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseSetLDA_C", MatDenseSetLDA_SeqDense)); 36029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArray_C", MatDenseGetArray_SeqDense)); 36039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArray_C", MatDenseRestoreArray_SeqDense)); 36049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDensePlaceArray_C", MatDensePlaceArray_SeqDense)); 36059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseResetArray_C", MatDenseResetArray_SeqDense)); 36069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseReplaceArray_C", MatDenseReplaceArray_SeqDense)); 36079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayRead_C", MatDenseGetArray_SeqDense)); 36089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayRead_C", MatDenseRestoreArray_SeqDense)); 36099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetArrayWrite_C", MatDenseGetArray_SeqDense)); 36109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArray_SeqDense)); 36119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqaij_C", MatConvert_SeqDense_SeqAIJ)); 36128baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 36139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_elemental_C", MatConvert_SeqDense_Elemental)); 36148baccfbdSHong Zhang #endif 3615d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 36169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 3617d24d4204SJose E. Roman #endif 36182bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA) 36199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensecuda_C", MatConvert_SeqDense_SeqDenseCUDA)); 36209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdensecuda_C", MatProductSetFromOptions_SeqDense)); 36219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensecuda_seqdense_C", MatProductSetFromOptions_SeqDense)); 36229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensecuda_C", MatProductSetFromOptions_SeqDense)); 36232bf066beSStefano Zampini #endif 362447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 362547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqdense_seqdensehip_C", MatConvert_SeqDense_SeqDenseHIP)); 362647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdensehip_C", MatProductSetFromOptions_SeqDense)); 362747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdensehip_seqdense_C", MatProductSetFromOptions_SeqDense)); 362847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdensehip_C", MatProductSetFromOptions_SeqDense)); 362947d993e7Ssuyashtn #endif 36309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqDenseSetPreallocation_C", MatSeqDenseSetPreallocation_SeqDense)); 36319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqaij_seqdense_C", MatProductSetFromOptions_SeqAIJ_SeqDense)); 36329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqdense_seqdense_C", MatProductSetFromOptions_SeqDense)); 36339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 36349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_seqsbaij_seqdense_C", MatProductSetFromOptions_SeqXBAIJ_SeqDense)); 363596e6d5c4SRichard Tran Mills 36369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumn_C", MatDenseGetColumn_SeqDense)); 36379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_SeqDense)); 36389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_SeqDense)); 36399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_SeqDense)); 36409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_SeqDense)); 36419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_SeqDense)); 36429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_SeqDense)); 36439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_SeqDense)); 36449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_SeqDense)); 36459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_SeqDense)); 36460be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultAddColumnRange_C", MatMultAddColumnRange_SeqDense)); 36470be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultHermitianTransposeColumnRange_C", MatMultHermitianTransposeColumnRange_SeqDense)); 36480be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMultHermitianTransposeAddColumnRange_C", MatMultHermitianTransposeAddColumnRange_SeqDense)); 36499566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQDENSE)); 36503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3651289bc588SBarry Smith } 365286aefd0dSHong Zhang 365386aefd0dSHong Zhang /*@C 365411a5261eSBarry Smith MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call `MatDenseRestoreColumn()` to avoid memory bleeding. 365586aefd0dSHong Zhang 365686aefd0dSHong Zhang Not Collective 365786aefd0dSHong Zhang 36585ea7661aSPierre Jolivet Input Parameters: 3659fe59aa6dSJacob Faibussowitsch + A - a `MATSEQDENSE` or `MATMPIDENSE` matrix 366086aefd0dSHong Zhang - col - column index 366186aefd0dSHong Zhang 366286aefd0dSHong Zhang Output Parameter: 366386aefd0dSHong Zhang . vals - pointer to the data 366486aefd0dSHong Zhang 366586aefd0dSHong Zhang Level: intermediate 366686aefd0dSHong Zhang 366711a5261eSBarry Smith Note: 366811a5261eSBarry Smith Use `MatDenseGetColumnVec()` to get access to a column of a `MATDENSE` treated as a `Vec` 366911a5261eSBarry Smith 36701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseRestoreColumn()`, `MatDenseGetColumnVec()` 367186aefd0dSHong Zhang @*/ 36725d83a8b1SBarry Smith PetscErrorCode MatDenseGetColumn(Mat A, PetscInt col, PetscScalar *vals[]) 3673d71ae5a4SJacob Faibussowitsch { 367486aefd0dSHong Zhang PetscFunctionBegin; 3675d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3676d5ea218eSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 36774f572ea9SToby Isaac PetscAssertPointer(vals, 3); 3678cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumn_C", (Mat, PetscInt, PetscScalar **), (A, col, vals)); 36793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368086aefd0dSHong Zhang } 368186aefd0dSHong Zhang 368286aefd0dSHong Zhang /*@C 368311a5261eSBarry Smith MatDenseRestoreColumn - returns access to a column of a `MATDENSE` matrix which is returned by `MatDenseGetColumn()`. 368486aefd0dSHong Zhang 368586aefd0dSHong Zhang Not Collective 368686aefd0dSHong Zhang 3687742765d3SMatthew Knepley Input Parameters: 3688fe59aa6dSJacob Faibussowitsch + A - a `MATSEQDENSE` or `MATMPIDENSE` matrix 36892ef1f0ffSBarry Smith - vals - pointer to the data (may be `NULL`) 369086aefd0dSHong Zhang 369186aefd0dSHong Zhang Level: intermediate 369286aefd0dSHong Zhang 36931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetColumn()` 369486aefd0dSHong Zhang @*/ 36955d83a8b1SBarry Smith PetscErrorCode MatDenseRestoreColumn(Mat A, PetscScalar *vals[]) 3696d71ae5a4SJacob Faibussowitsch { 369786aefd0dSHong Zhang PetscFunctionBegin; 3698d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 36994f572ea9SToby Isaac PetscAssertPointer(vals, 2); 3700cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumn_C", (Mat, PetscScalar **), (A, vals)); 37013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 370286aefd0dSHong Zhang } 37036947451fSStefano Zampini 37040f74d2c1SSatish Balay /*@ 370511a5261eSBarry Smith MatDenseGetColumnVec - Gives read-write access to a column of a `MATDENSE` matrix, represented as a `Vec`. 37066947451fSStefano Zampini 37076947451fSStefano Zampini Collective 37086947451fSStefano Zampini 37095ea7661aSPierre Jolivet Input Parameters: 3710fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 37116947451fSStefano Zampini - col - the column index 37126947451fSStefano Zampini 37136947451fSStefano Zampini Output Parameter: 37146947451fSStefano Zampini . v - the vector 37156947451fSStefano Zampini 37162ef1f0ffSBarry Smith Level: intermediate 37172ef1f0ffSBarry Smith 37186947451fSStefano Zampini Notes: 371911a5261eSBarry Smith The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVec()` when the vector is no longer needed. 372011a5261eSBarry Smith 372111a5261eSBarry Smith Use `MatDenseGetColumnVecRead()` to obtain read-only access or `MatDenseGetColumnVecWrite()` for write-only access. 37226947451fSStefano Zampini 37231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()`, `MatDenseGetColumn()` 37246947451fSStefano Zampini @*/ 3725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec(Mat A, PetscInt col, Vec *v) 3726d71ae5a4SJacob Faibussowitsch { 37276947451fSStefano Zampini PetscFunctionBegin; 37286947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37296947451fSStefano Zampini PetscValidType(A, 1); 37306947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 37314f572ea9SToby Isaac PetscAssertPointer(v, 3); 373228b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37332cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3734cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v)); 37353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37366947451fSStefano Zampini } 37376947451fSStefano Zampini 37380f74d2c1SSatish Balay /*@ 3739fb850c59SBarry Smith MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVec()`. 37406947451fSStefano Zampini 37416947451fSStefano Zampini Collective 37426947451fSStefano Zampini 37435ea7661aSPierre Jolivet Input Parameters: 3744fb850c59SBarry Smith + A - the `Mat` object 37456947451fSStefano Zampini . col - the column index 3746fb850c59SBarry Smith - v - the `Vec` object (may be `NULL`) 37476947451fSStefano Zampini 37486947451fSStefano Zampini Level: intermediate 37496947451fSStefano Zampini 37501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 37516947451fSStefano Zampini @*/ 3752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec(Mat A, PetscInt col, Vec *v) 3753d71ae5a4SJacob Faibussowitsch { 37546947451fSStefano Zampini PetscFunctionBegin; 37556947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37566947451fSStefano Zampini PetscValidType(A, 1); 37576947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 375808401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37592cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3760cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVec_C", (Mat, PetscInt, Vec *), (A, col, v)); 37613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37626947451fSStefano Zampini } 37636947451fSStefano Zampini 37640f74d2c1SSatish Balay /*@ 3765fb850c59SBarry Smith MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a `Vec`. 37666947451fSStefano Zampini 37676947451fSStefano Zampini Collective 37686947451fSStefano Zampini 37695ea7661aSPierre Jolivet Input Parameters: 3770fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 37716947451fSStefano Zampini - col - the column index 37726947451fSStefano Zampini 37736947451fSStefano Zampini Output Parameter: 37746947451fSStefano Zampini . v - the vector 37756947451fSStefano Zampini 37762ef1f0ffSBarry Smith Level: intermediate 37772ef1f0ffSBarry Smith 37786947451fSStefano Zampini Notes: 37796947451fSStefano Zampini The vector is owned by PETSc and users cannot modify it. 378011a5261eSBarry Smith 37812ef1f0ffSBarry Smith Users need to call `MatDenseRestoreColumnVecRead()` when the vector is no longer needed. 378211a5261eSBarry Smith 37832ef1f0ffSBarry Smith Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecWrite()` for write-only access. 37846947451fSStefano Zampini 37851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 37866947451fSStefano Zampini @*/ 3787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead(Mat A, PetscInt col, Vec *v) 3788d71ae5a4SJacob Faibussowitsch { 37896947451fSStefano Zampini PetscFunctionBegin; 37906947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 37916947451fSStefano Zampini PetscValidType(A, 1); 37926947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 37934f572ea9SToby Isaac PetscAssertPointer(v, 3); 379428b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 37952cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3796cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v)); 37973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37986947451fSStefano Zampini } 37996947451fSStefano Zampini 38000f74d2c1SSatish Balay /*@ 3801fb850c59SBarry Smith MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVecRead()`. 38026947451fSStefano Zampini 38036947451fSStefano Zampini Collective 38046947451fSStefano Zampini 38055ea7661aSPierre Jolivet Input Parameters: 3806fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 38076947451fSStefano Zampini . col - the column index 3808fb850c59SBarry Smith - v - the `Vec` object (may be `NULL`) 38096947451fSStefano Zampini 38106947451fSStefano Zampini Level: intermediate 38116947451fSStefano Zampini 38121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecWrite()` 38136947451fSStefano Zampini @*/ 3814d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead(Mat A, PetscInt col, Vec *v) 3815d71ae5a4SJacob Faibussowitsch { 38166947451fSStefano Zampini PetscFunctionBegin; 38176947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38186947451fSStefano Zampini PetscValidType(A, 1); 38196947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 382008401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 38212cf15c64SPierre Jolivet PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3822cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVecRead_C", (Mat, PetscInt, Vec *), (A, col, v)); 38233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38246947451fSStefano Zampini } 38256947451fSStefano Zampini 38260f74d2c1SSatish Balay /*@ 3827fb850c59SBarry Smith MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a `Vec`. 38286947451fSStefano Zampini 38296947451fSStefano Zampini Collective 38306947451fSStefano Zampini 38315ea7661aSPierre Jolivet Input Parameters: 3832fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 38336947451fSStefano Zampini - col - the column index 38346947451fSStefano Zampini 38356947451fSStefano Zampini Output Parameter: 38366947451fSStefano Zampini . v - the vector 38376947451fSStefano Zampini 38386947451fSStefano Zampini Level: intermediate 38396947451fSStefano Zampini 38402ef1f0ffSBarry Smith Notes: 38412ef1f0ffSBarry Smith The vector is owned by PETSc. Users need to call `MatDenseRestoreColumnVecWrite()` when the vector is no longer needed. 38422ef1f0ffSBarry Smith 38432ef1f0ffSBarry Smith Use `MatDenseGetColumnVec()` to obtain read-write access or `MatDenseGetColumnVecRead()` for read-only access. 38442ef1f0ffSBarry Smith 38451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()`, `MatDenseRestoreColumnVecWrite()` 38466947451fSStefano Zampini @*/ 3847d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite(Mat A, PetscInt col, Vec *v) 3848d71ae5a4SJacob Faibussowitsch { 38496947451fSStefano Zampini PetscFunctionBegin; 38506947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38516947451fSStefano Zampini PetscValidType(A, 1); 38526947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 38534f572ea9SToby Isaac PetscAssertPointer(v, 3); 385428b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3855aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3856cac4c232SBarry Smith PetscUseMethod(A, "MatDenseGetColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v)); 38573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38586947451fSStefano Zampini } 38596947451fSStefano Zampini 38600f74d2c1SSatish Balay /*@ 3861fb850c59SBarry Smith MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from `MatDenseGetColumnVecWrite()`. 38626947451fSStefano Zampini 38636947451fSStefano Zampini Collective 38646947451fSStefano Zampini 38655ea7661aSPierre Jolivet Input Parameters: 3866fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 38676947451fSStefano Zampini . col - the column index 38682ef1f0ffSBarry Smith - v - the `Vec` object (may be `NULL`) 38696947451fSStefano Zampini 38706947451fSStefano Zampini Level: intermediate 38716947451fSStefano Zampini 38721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseGetColumnVecRead()`, `MatDenseGetColumnVecWrite()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreColumnVecRead()` 38736947451fSStefano Zampini @*/ 3874d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A, PetscInt col, Vec *v) 3875d71ae5a4SJacob Faibussowitsch { 38766947451fSStefano Zampini PetscFunctionBegin; 38776947451fSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 38786947451fSStefano Zampini PetscValidType(A, 1); 38796947451fSStefano Zampini PetscValidLogicalCollectiveInt(A, col, 2); 388008401ef6SPierre Jolivet PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3881aed4548fSBarry Smith PetscCheck(col >= 0 && col < A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")", col, A->cmap->N); 3882cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreColumnVecWrite_C", (Mat, PetscInt, Vec *), (A, col, v)); 38833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38846947451fSStefano Zampini } 38855ea7661aSPierre Jolivet 38860f74d2c1SSatish Balay /*@ 3887fb850c59SBarry Smith MatDenseGetSubMatrix - Gives access to a block of rows and columns of a dense matrix, represented as a `Mat`. 38885ea7661aSPierre Jolivet 38895ea7661aSPierre Jolivet Collective 38905ea7661aSPierre Jolivet 38915ea7661aSPierre Jolivet Input Parameters: 3892fb850c59SBarry Smith + A - the `Mat` object 38932ef1f0ffSBarry Smith . rbegin - the first global row index in the block (if `PETSC_DECIDE`, is 0) 38942ef1f0ffSBarry Smith . rend - the global row index past the last one in the block (if `PETSC_DECIDE`, is `M`) 38952ef1f0ffSBarry Smith . cbegin - the first global column index in the block (if `PETSC_DECIDE`, is 0) 38962ef1f0ffSBarry Smith - cend - the global column index past the last one in the block (if `PETSC_DECIDE`, is `N`) 38975ea7661aSPierre Jolivet 38985ea7661aSPierre Jolivet Output Parameter: 38995ea7661aSPierre Jolivet . v - the matrix 39005ea7661aSPierre Jolivet 39015ea7661aSPierre Jolivet Level: intermediate 39025ea7661aSPierre Jolivet 39032ef1f0ffSBarry Smith Notes: 39042ef1f0ffSBarry Smith The matrix is owned by PETSc. Users need to call `MatDenseRestoreSubMatrix()` when the matrix is no longer needed. 39052ef1f0ffSBarry Smith 39062ef1f0ffSBarry Smith The output matrix is not redistributed by PETSc, so depending on the values of `rbegin` and `rend`, some processes may have no local rows. 39072ef1f0ffSBarry Smith 39081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseRestoreSubMatrix()` 39095ea7661aSPierre Jolivet @*/ 3910d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 3911d71ae5a4SJacob Faibussowitsch { 39125ea7661aSPierre Jolivet PetscFunctionBegin; 39135ea7661aSPierre Jolivet PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 39145ea7661aSPierre Jolivet PetscValidType(A, 1); 3915a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, rbegin, 2); 3916a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, rend, 3); 3917a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, cbegin, 4); 3918a2748737SPierre Jolivet PetscValidLogicalCollectiveInt(A, cend, 5); 39194f572ea9SToby Isaac PetscAssertPointer(v, 6); 3920a2748737SPierre Jolivet if (rbegin == PETSC_DECIDE) rbegin = 0; 3921a2748737SPierre Jolivet if (rend == PETSC_DECIDE) rend = A->rmap->N; 3922a2748737SPierre Jolivet if (cbegin == PETSC_DECIDE) cbegin = 0; 3923a2748737SPierre Jolivet if (cend == PETSC_DECIDE) cend = A->cmap->N; 392428b400f6SJacob Faibussowitsch PetscCheck(A->preallocated, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Matrix not preallocated"); 3925a2748737SPierre Jolivet PetscCheck(rbegin >= 0 && rbegin <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", rbegin, A->rmap->N); 3926a2748737SPierre Jolivet PetscCheck(rend >= rbegin && rend <= A->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid rend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", rend, rbegin, A->rmap->N); 3927a2748737SPierre Jolivet PetscCheck(cbegin >= 0 && cbegin <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT "]", cbegin, A->cmap->N); 3928a2748737SPierre Jolivet PetscCheck(cend >= cbegin && cend <= A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Invalid cend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT "]", cend, cbegin, A->cmap->N); 3929a2748737SPierre Jolivet PetscUseMethod(A, "MatDenseGetSubMatrix_C", (Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *), (A, rbegin, rend, cbegin, cend, v)); 39303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39315ea7661aSPierre Jolivet } 39325ea7661aSPierre Jolivet 39330f74d2c1SSatish Balay /*@ 3934fb850c59SBarry Smith MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from `MatDenseGetSubMatrix()`. 39355ea7661aSPierre Jolivet 39365ea7661aSPierre Jolivet Collective 39375ea7661aSPierre Jolivet 39385ea7661aSPierre Jolivet Input Parameters: 3939fe59aa6dSJacob Faibussowitsch + A - the `Mat` object 39402ef1f0ffSBarry Smith - v - the `Mat` object (may be `NULL`) 39415ea7661aSPierre Jolivet 39425ea7661aSPierre Jolivet Level: intermediate 39435ea7661aSPierre Jolivet 39441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATDENSECUDA`, `MATDENSEHIP`, `MatDenseGetColumnVec()`, `MatDenseRestoreColumnVec()`, `MatDenseGetSubMatrix()` 39455ea7661aSPierre Jolivet @*/ 3946d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix(Mat A, Mat *v) 3947d71ae5a4SJacob Faibussowitsch { 39485ea7661aSPierre Jolivet PetscFunctionBegin; 39495ea7661aSPierre Jolivet PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 39505ea7661aSPierre Jolivet PetscValidType(A, 1); 39514f572ea9SToby Isaac PetscAssertPointer(v, 2); 3952cac4c232SBarry Smith PetscUseMethod(A, "MatDenseRestoreSubMatrix_C", (Mat, Mat *), (A, v)); 39533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39545ea7661aSPierre Jolivet } 39558a9c020eSBarry Smith 39568a9c020eSBarry Smith #include <petscblaslapack.h> 39578a9c020eSBarry Smith #include <petsc/private/kernels/blockinvert.h> 39588a9c020eSBarry Smith 3959d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqDenseInvert(Mat A) 3960d71ae5a4SJacob Faibussowitsch { 3961d63b1753SJacob Faibussowitsch PetscInt m; 39628a9c020eSBarry Smith const PetscReal shift = 0.0; 3963d63b1753SJacob Faibussowitsch PetscBool allowzeropivot, zeropivotdetected = PETSC_FALSE; 3964d63b1753SJacob Faibussowitsch PetscScalar *values; 39658a9c020eSBarry Smith 39668a9c020eSBarry Smith PetscFunctionBegin; 3967d63b1753SJacob Faibussowitsch PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3968d63b1753SJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &values)); 3969d63b1753SJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, NULL)); 3970d63b1753SJacob Faibussowitsch allowzeropivot = PetscNot(A->erroriffailure); 39718a9c020eSBarry Smith /* factor and invert each block */ 3972d63b1753SJacob Faibussowitsch switch (m) { 3973d71ae5a4SJacob Faibussowitsch case 1: 3974d71ae5a4SJacob Faibussowitsch values[0] = (PetscScalar)1.0 / (values[0] + shift); 3975d71ae5a4SJacob Faibussowitsch break; 39768a9c020eSBarry Smith case 2: 39778a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_2(values, shift, allowzeropivot, &zeropivotdetected)); 39788a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39798a9c020eSBarry Smith break; 39808a9c020eSBarry Smith case 3: 39818a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_3(values, shift, allowzeropivot, &zeropivotdetected)); 39828a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39838a9c020eSBarry Smith break; 39848a9c020eSBarry Smith case 4: 39858a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_4(values, shift, allowzeropivot, &zeropivotdetected)); 39868a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39878a9c020eSBarry Smith break; 39889371c9d4SSatish Balay case 5: { 39898a9c020eSBarry Smith PetscScalar work[25]; 39908a9c020eSBarry Smith PetscInt ipvt[5]; 39918a9c020eSBarry Smith 39928a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_5(values, ipvt, work, shift, allowzeropivot, &zeropivotdetected)); 39938a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39949371c9d4SSatish Balay } break; 39958a9c020eSBarry Smith case 6: 39968a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_6(values, shift, allowzeropivot, &zeropivotdetected)); 39978a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 39988a9c020eSBarry Smith break; 39998a9c020eSBarry Smith case 7: 40008a9c020eSBarry Smith PetscCall(PetscKernel_A_gets_inverse_A_7(values, shift, allowzeropivot, &zeropivotdetected)); 40018a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 40028a9c020eSBarry Smith break; 40039371c9d4SSatish Balay default: { 40048a9c020eSBarry Smith PetscInt *v_pivots, *IJ, j; 40058a9c020eSBarry Smith PetscScalar *v_work; 40068a9c020eSBarry Smith 4007d63b1753SJacob Faibussowitsch PetscCall(PetscMalloc3(m, &v_work, m, &v_pivots, m, &IJ)); 4008d63b1753SJacob Faibussowitsch for (j = 0; j < m; j++) IJ[j] = j; 4009d63b1753SJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A(m, values, v_pivots, v_work, allowzeropivot, &zeropivotdetected)); 40108a9c020eSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 40118a9c020eSBarry Smith PetscCall(PetscFree3(v_work, v_pivots, IJ)); 40128a9c020eSBarry Smith } 40138a9c020eSBarry Smith } 4014d63b1753SJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &values)); 40153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40168a9c020eSBarry Smith } 4017