1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 367e560aaSBarry Smith /* 467e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 770f55243SBarry Smith #include "src/mat/impls/dense/seq/dense.h" 8b4c862e0SSatish Balay #include "petscblaslapack.h" 9289bc588SBarry Smith 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense" 12f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 131987afe7SBarry Smith { 141987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 15f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 1613f74950SBarry Smith PetscInt j; 170805154bSBarry Smith PetscBLASInt N,m,ldax,lday,one = 1; 18efee365bSSatish Balay PetscErrorCode ierr; 193a40ed3dSBarry Smith 203a40ed3dSBarry Smith PetscFunctionBegin; 210805154bSBarry Smith N = PetscBLASIntCast(X->rmap.n*X->cmap.n); 220805154bSBarry Smith m = PetscBLASIntCast(X->rmap.n); 230805154bSBarry Smith ldax = PetscBLASIntCast(x->lda); 240805154bSBarry Smith lday = PetscBLASIntCast(y->lda); 25a5ce6ee0Svictorle if (ldax>m || lday>m) { 26899cda47SBarry Smith for (j=0; j<X->cmap.n; j++) { 27f4df32b1SMatthew Knepley BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one); 28a5ce6ee0Svictorle } 29a5ce6ee0Svictorle } else { 30f4df32b1SMatthew Knepley BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one); 31a5ce6ee0Svictorle } 32efee365bSSatish Balay ierr = PetscLogFlops(2*N-1);CHKERRQ(ierr); 333a40ed3dSBarry Smith PetscFunctionReturn(0); 341987afe7SBarry Smith } 351987afe7SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense" 38dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 39289bc588SBarry Smith { 40899cda47SBarry Smith PetscInt N = A->rmap.n*A->cmap.n; 413a40ed3dSBarry Smith 423a40ed3dSBarry Smith PetscFunctionBegin; 43899cda47SBarry Smith info->rows_global = (double)A->rmap.n; 44899cda47SBarry Smith info->columns_global = (double)A->cmap.n; 45899cda47SBarry Smith info->rows_local = (double)A->rmap.n; 46899cda47SBarry Smith info->columns_local = (double)A->cmap.n; 474e220ebcSLois Curfman McInnes info->block_size = 1.0; 484e220ebcSLois Curfman McInnes info->nz_allocated = (double)N; 496de62eeeSBarry Smith info->nz_used = (double)N; 506de62eeeSBarry Smith info->nz_unneeded = (double)0; 514e220ebcSLois Curfman McInnes info->assemblies = (double)A->num_ass; 524e220ebcSLois Curfman McInnes info->mallocs = 0; 537adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 544e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 554e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 564e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 573a40ed3dSBarry Smith PetscFunctionReturn(0); 58289bc588SBarry Smith } 59289bc588SBarry Smith 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense" 62f4df32b1SMatthew Knepley PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 6380cd9d93SLois Curfman McInnes { 64273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 65f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 66efee365bSSatish Balay PetscErrorCode ierr; 670805154bSBarry Smith PetscBLASInt one = 1,j,nz,lda = PetscBLASIntCast(a->lda); 6880cd9d93SLois Curfman McInnes 693a40ed3dSBarry Smith PetscFunctionBegin; 70899cda47SBarry Smith if (lda>A->rmap.n) { 710805154bSBarry Smith nz = PetscBLASIntCast(A->rmap.n); 72899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 73f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v+j*lda,&one); 74a5ce6ee0Svictorle } 75a5ce6ee0Svictorle } else { 760805154bSBarry Smith nz = PetscBLASIntCast(A->rmap.n*A->cmap.n); 77f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 78a5ce6ee0Svictorle } 79efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 803a40ed3dSBarry Smith PetscFunctionReturn(0); 8180cd9d93SLois Curfman McInnes } 8280cd9d93SLois Curfman McInnes 831cbb95d3SBarry Smith #undef __FUNCT__ 841cbb95d3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqDense" 851cbb95d3SBarry Smith PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscTruth *fl) 861cbb95d3SBarry Smith { 871cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 881cbb95d3SBarry Smith PetscInt i,j,m = A->rmap.n,N; 891cbb95d3SBarry Smith PetscScalar *v = a->v; 901cbb95d3SBarry Smith 911cbb95d3SBarry Smith PetscFunctionBegin; 921cbb95d3SBarry Smith *fl = PETSC_FALSE; 931cbb95d3SBarry Smith if (A->rmap.n != A->cmap.n) PetscFunctionReturn(0); 941cbb95d3SBarry Smith N = a->lda; 951cbb95d3SBarry Smith 961cbb95d3SBarry Smith for (i=0; i<m; i++) { 971cbb95d3SBarry Smith for (j=i+1; j<m; j++) { 981cbb95d3SBarry Smith if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0); 991cbb95d3SBarry Smith } 1001cbb95d3SBarry Smith } 1011cbb95d3SBarry Smith *fl = PETSC_TRUE; 1021cbb95d3SBarry Smith PetscFunctionReturn(0); 1031cbb95d3SBarry Smith } 1041cbb95d3SBarry Smith 105289bc588SBarry Smith /* ---------------------------------------------------------------*/ 1066831982aSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 1076831982aSBarry Smith rather than put it in the Mat->row slot.*/ 1084a2ae208SSatish Balay #undef __FUNCT__ 1094a2ae208SSatish Balay #define __FUNCT__ "MatLUFactor_SeqDense" 110dfbe8321SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,MatFactorInfo *minfo) 111289bc588SBarry Smith { 112a07ab388SBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF) 11381f479a6Svictorle PetscFunctionBegin; 114a07ab388SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable."); 115a07ab388SBarry Smith #else 116c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1176849ba73SBarry Smith PetscErrorCode ierr; 1180805154bSBarry Smith PetscBLASInt n,m,info; 11955659b69SBarry Smith 1203a40ed3dSBarry Smith PetscFunctionBegin; 1210805154bSBarry Smith n = PetscBLASIntCast(A->cmap.n); 1220805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 123289bc588SBarry Smith if (!mat->pivots) { 124899cda47SBarry Smith ierr = PetscMalloc((A->rmap.n+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr); 125899cda47SBarry Smith ierr = PetscLogObjectMemory(A,A->rmap.n*sizeof(PetscBLASInt));CHKERRQ(ierr); 126289bc588SBarry Smith } 1275c9eb25fSBarry Smith A->factor = MAT_FACTOR_LU; 128899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 12971044d3cSBarry Smith LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info); 13029bbc08cSBarry Smith if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization"); 13129bbc08cSBarry Smith if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 132899cda47SBarry Smith ierr = PetscLogFlops((2*A->cmap.n*A->cmap.n*A->cmap.n)/3);CHKERRQ(ierr); 133a07ab388SBarry Smith #endif 1343a40ed3dSBarry Smith PetscFunctionReturn(0); 135289bc588SBarry Smith } 1366ee01492SSatish Balay 137b24902e0SBarry Smith 138b24902e0SBarry Smith #undef __FUNCT__ 139b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqDense" 140b24902e0SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 141b24902e0SBarry Smith { 142b24902e0SBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l; 143b24902e0SBarry Smith PetscErrorCode ierr; 144b24902e0SBarry Smith PetscInt lda = (PetscInt)mat->lda,j,m; 145b24902e0SBarry Smith Mat newi = *newmat; 146b24902e0SBarry Smith 147b24902e0SBarry Smith PetscFunctionBegin; 1485c9eb25fSBarry Smith ierr = MatSeqDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 149b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 150b24902e0SBarry Smith l = (Mat_SeqDense*)newi->data; 151b24902e0SBarry Smith if (lda>A->rmap.n) { 152b24902e0SBarry Smith m = A->rmap.n; 153b24902e0SBarry Smith for (j=0; j<A->cmap.n; j++) { 154b24902e0SBarry Smith ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 155b24902e0SBarry Smith } 156b24902e0SBarry Smith } else { 157b24902e0SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap.n*A->cmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 158b24902e0SBarry Smith } 159b24902e0SBarry Smith } 160b24902e0SBarry Smith newi->assembled = PETSC_TRUE; 161b24902e0SBarry Smith PetscFunctionReturn(0); 162b24902e0SBarry Smith } 163b24902e0SBarry Smith 1644a2ae208SSatish Balay #undef __FUNCT__ 1654a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense" 166dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 16702cad45dSBarry Smith { 1686849ba73SBarry Smith PetscErrorCode ierr; 16902cad45dSBarry Smith 1703a40ed3dSBarry Smith PetscFunctionBegin; 1715c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,newmat);CHKERRQ(ierr); 1725c9eb25fSBarry Smith ierr = MatSetSizes(*newmat,A->rmap.n,A->cmap.n,A->rmap.n,A->cmap.n);CHKERRQ(ierr); 1735c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 174b24902e0SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(A,cpvalues,newmat);CHKERRQ(ierr); 175b24902e0SBarry Smith PetscFunctionReturn(0); 176b24902e0SBarry Smith } 177b24902e0SBarry Smith 178b24902e0SBarry Smith #undef __FUNCT__ 179b24902e0SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense" 180b24902e0SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat A,IS row,MatFactorInfo *info,Mat *fact) 181b24902e0SBarry Smith { 182b24902e0SBarry Smith PetscErrorCode ierr; 183b24902e0SBarry Smith 184b24902e0SBarry Smith PetscFunctionBegin; 1855c9eb25fSBarry Smith ierr = MatDuplicateNoCreate_SeqDense(A,MAT_COPY_VALUES,fact);CHKERRQ(ierr); 1863a40ed3dSBarry Smith PetscFunctionReturn(0); 18702cad45dSBarry Smith } 18802cad45dSBarry Smith 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorSymbolic_SeqDense" 191dfbe8321SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat A,IS row,IS col,MatFactorInfo *info,Mat *fact) 192289bc588SBarry Smith { 193dfbe8321SBarry Smith PetscErrorCode ierr; 1943a40ed3dSBarry Smith 1953a40ed3dSBarry Smith PetscFunctionBegin; 196b24902e0SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr); 197b24902e0SBarry Smith PetscFunctionReturn(0); 198b24902e0SBarry Smith } 199b24902e0SBarry Smith 200b24902e0SBarry Smith #undef __FUNCT__ 201b24902e0SBarry Smith #define __FUNCT__ "MatGetFactor_seqdense_petsc" 2025c9eb25fSBarry Smith PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 203b24902e0SBarry Smith { 204b24902e0SBarry Smith PetscErrorCode ierr; 205b24902e0SBarry Smith 206b24902e0SBarry Smith PetscFunctionBegin; 207b24902e0SBarry Smith ierr = MatCreate(((PetscObject)A)->comm,fact);CHKERRQ(ierr); 208b24902e0SBarry Smith ierr = MatSetSizes(*fact,A->rmap.n,A->cmap.n,A->rmap.n,A->cmap.n);CHKERRQ(ierr); 209b24902e0SBarry Smith ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr); 210*9f4db6b0SBarry Smith (*fact)->factor = ftype; 2113a40ed3dSBarry Smith PetscFunctionReturn(0); 212289bc588SBarry Smith } 2136ee01492SSatish Balay 2144a2ae208SSatish Balay #undef __FUNCT__ 2154a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense" 216af281ebdSHong Zhang PetscErrorCode MatLUFactorNumeric_SeqDense(Mat A,MatFactorInfo *info_dummy,Mat *fact) 217289bc588SBarry Smith { 21802cad45dSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l = (Mat_SeqDense*)(*fact)->data; 2196849ba73SBarry Smith PetscErrorCode ierr; 220899cda47SBarry Smith PetscInt lda1=mat->lda,lda2=l->lda, m=A->rmap.n,n=A->cmap.n, j; 2214482741eSBarry Smith MatFactorInfo info; 2223a40ed3dSBarry Smith 2233a40ed3dSBarry Smith PetscFunctionBegin; 22402cad45dSBarry Smith /* copy the numerical values */ 2251b807ce4Svictorle if (lda1>m || lda2>m ) { 2261b807ce4Svictorle for (j=0; j<n; j++) { 2271b807ce4Svictorle ierr = PetscMemcpy(l->v+j*lda2,mat->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 2281b807ce4Svictorle } 2291b807ce4Svictorle } else { 230899cda47SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap.n*A->cmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 2311b807ce4Svictorle } 232*9f4db6b0SBarry Smith (*fact)->factor = MAT_FACTOR_NONE; 2334482741eSBarry Smith ierr = MatLUFactor(*fact,0,0,&info);CHKERRQ(ierr); 2343a40ed3dSBarry Smith PetscFunctionReturn(0); 235289bc588SBarry Smith } 2366ee01492SSatish Balay 2374a2ae208SSatish Balay #undef __FUNCT__ 2384a2ae208SSatish Balay #define __FUNCT__ "MatCholeskyFactor_SeqDense" 239dfbe8321SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,MatFactorInfo *factinfo) 240289bc588SBarry Smith { 241a07ab388SBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF) 242a07ab388SBarry Smith PetscFunctionBegin; 243a07ab388SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 244a07ab388SBarry Smith #else 245c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2466849ba73SBarry Smith PetscErrorCode ierr; 2470805154bSBarry Smith PetscBLASInt info,n = PetscBLASIntCast(A->cmap.n); 24855659b69SBarry Smith 2493a40ed3dSBarry Smith PetscFunctionBegin; 250606d414cSSatish Balay ierr = PetscFree(mat->pivots);CHKERRQ(ierr); 251752f5567SLois Curfman McInnes mat->pivots = 0; 25205b42c5fSBarry Smith 253899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 25471044d3cSBarry Smith LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info); 25577431f27SBarry Smith if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 2565c9eb25fSBarry Smith A->factor = MAT_FACTOR_CHOLESKY; 257899cda47SBarry Smith ierr = PetscLogFlops((A->cmap.n*A->cmap.n*A->cmap.n)/3);CHKERRQ(ierr); 258a07ab388SBarry Smith #endif 2593a40ed3dSBarry Smith PetscFunctionReturn(0); 260289bc588SBarry Smith } 261289bc588SBarry Smith 2624a2ae208SSatish Balay #undef __FUNCT__ 2630b4b3355SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense" 264af281ebdSHong Zhang PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat A,MatFactorInfo *info_dummy,Mat *fact) 2650b4b3355SBarry Smith { 266dfbe8321SBarry Smith PetscErrorCode ierr; 26715e8a5b3SHong Zhang MatFactorInfo info; 2680b4b3355SBarry Smith 2690b4b3355SBarry Smith PetscFunctionBegin; 27015e8a5b3SHong Zhang info.fill = 1.0; 27115e8a5b3SHong Zhang ierr = MatCholeskyFactor_SeqDense(*fact,0,&info);CHKERRQ(ierr); 2720b4b3355SBarry Smith PetscFunctionReturn(0); 2730b4b3355SBarry Smith } 2740b4b3355SBarry Smith 2750b4b3355SBarry Smith #undef __FUNCT__ 2764a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense" 277dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy) 278289bc588SBarry Smith { 279c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2806849ba73SBarry Smith PetscErrorCode ierr; 28187828ca2SBarry Smith PetscScalar *x,*y; 2820805154bSBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap.n); 28367e560aaSBarry Smith 2843a40ed3dSBarry Smith PetscFunctionBegin; 2851ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2861ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 287899cda47SBarry Smith ierr = PetscMemcpy(y,x,A->rmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 2885c9eb25fSBarry Smith if (A->factor == MAT_FACTOR_LU) { 289ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 29080444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 291ae7cfcebSSatish Balay #else 29271044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2934ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve"); 294ae7cfcebSSatish Balay #endif 2955c9eb25fSBarry Smith } else if (A->factor == MAT_FACTOR_CHOLESKY){ 296ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 29780444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 298ae7cfcebSSatish Balay #else 29971044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3004ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve"); 301ae7cfcebSSatish Balay #endif 302289bc588SBarry Smith } 30329bbc08cSBarry Smith else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 3041ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3051ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 306899cda47SBarry Smith ierr = PetscLogFlops(2*A->cmap.n*A->cmap.n - A->cmap.n);CHKERRQ(ierr); 3073a40ed3dSBarry Smith PetscFunctionReturn(0); 308289bc588SBarry Smith } 3096ee01492SSatish Balay 3104a2ae208SSatish Balay #undef __FUNCT__ 3114a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense" 312dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy) 313da3a660dSBarry Smith { 314c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 315dfbe8321SBarry Smith PetscErrorCode ierr; 31687828ca2SBarry Smith PetscScalar *x,*y; 3170805154bSBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap.n); 31867e560aaSBarry Smith 3193a40ed3dSBarry Smith PetscFunctionBegin; 3201ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3211ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 322899cda47SBarry Smith ierr = PetscMemcpy(y,x,A->rmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 323752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 324da3a660dSBarry Smith if (mat->pivots) { 325ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 32680444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 327ae7cfcebSSatish Balay #else 32871044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 3294ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 330ae7cfcebSSatish Balay #endif 3317a97a34bSBarry Smith } else { 332ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 33380444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 334ae7cfcebSSatish Balay #else 33571044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3364ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 337ae7cfcebSSatish Balay #endif 338da3a660dSBarry Smith } 3391ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3401ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 341899cda47SBarry Smith ierr = PetscLogFlops(2*A->cmap.n*A->cmap.n - A->cmap.n);CHKERRQ(ierr); 3423a40ed3dSBarry Smith PetscFunctionReturn(0); 343da3a660dSBarry Smith } 3446ee01492SSatish Balay 3454a2ae208SSatish Balay #undef __FUNCT__ 3464a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense" 347dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 348da3a660dSBarry Smith { 349c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 350dfbe8321SBarry Smith PetscErrorCode ierr; 35187828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 352da3a660dSBarry Smith Vec tmp = 0; 3530805154bSBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap.n); 35467e560aaSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3561ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3571ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 358899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 359da3a660dSBarry Smith if (yy == zz) { 36078b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 36152e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 36278b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 363da3a660dSBarry Smith } 364899cda47SBarry Smith ierr = PetscMemcpy(y,x,A->rmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 365752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 366da3a660dSBarry Smith if (mat->pivots) { 367ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 36880444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 369ae7cfcebSSatish Balay #else 37071044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 3712ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 372ae7cfcebSSatish Balay #endif 373a8c6a408SBarry Smith } else { 374ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 37580444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 376ae7cfcebSSatish Balay #else 37771044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3782ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 379ae7cfcebSSatish Balay #endif 380da3a660dSBarry Smith } 3812dcb1b2aSMatthew Knepley if (tmp) {ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);} 3822dcb1b2aSMatthew Knepley else {ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);} 3831ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3841ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 385899cda47SBarry Smith ierr = PetscLogFlops(2*A->cmap.n*A->cmap.n);CHKERRQ(ierr); 3863a40ed3dSBarry Smith PetscFunctionReturn(0); 387da3a660dSBarry Smith } 38867e560aaSBarry Smith 3894a2ae208SSatish Balay #undef __FUNCT__ 3904a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense" 391dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 392da3a660dSBarry Smith { 393c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 3946849ba73SBarry Smith PetscErrorCode ierr; 39587828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 396da3a660dSBarry Smith Vec tmp; 3970805154bSBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap.n); 39867e560aaSBarry Smith 3993a40ed3dSBarry Smith PetscFunctionBegin; 400899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 4011ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4021ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 403da3a660dSBarry Smith if (yy == zz) { 40478b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 40552e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 40678b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 407da3a660dSBarry Smith } 408899cda47SBarry Smith ierr = PetscMemcpy(y,x,A->rmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 409752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 410da3a660dSBarry Smith if (mat->pivots) { 411ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 41280444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 413ae7cfcebSSatish Balay #else 41471044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 4152ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 416ae7cfcebSSatish Balay #endif 4173a40ed3dSBarry Smith } else { 418ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 41980444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 420ae7cfcebSSatish Balay #else 42171044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 4222ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 423ae7cfcebSSatish Balay #endif 424da3a660dSBarry Smith } 42590f02eecSBarry Smith if (tmp) { 4262dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 42790f02eecSBarry Smith ierr = VecDestroy(tmp);CHKERRQ(ierr); 4283a40ed3dSBarry Smith } else { 4292dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 43090f02eecSBarry Smith } 4311ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4321ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 433899cda47SBarry Smith ierr = PetscLogFlops(2*A->cmap.n*A->cmap.n);CHKERRQ(ierr); 4343a40ed3dSBarry Smith PetscFunctionReturn(0); 435da3a660dSBarry Smith } 436289bc588SBarry Smith /* ------------------------------------------------------------------*/ 4374a2ae208SSatish Balay #undef __FUNCT__ 4384a2ae208SSatish Balay #define __FUNCT__ "MatRelax_SeqDense" 43913f74950SBarry Smith PetscErrorCode MatRelax_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 440289bc588SBarry Smith { 441c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 44287828ca2SBarry Smith PetscScalar *x,*b,*v = mat->v,zero = 0.0,xt; 443dfbe8321SBarry Smith PetscErrorCode ierr; 444899cda47SBarry Smith PetscInt m = A->rmap.n,i; 445aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX) 4460805154bSBarry Smith PetscBLASInt o = 1,bm = PetscBLASIntCast(m); 447bc1b551cSSatish Balay #endif 448289bc588SBarry Smith 4493a40ed3dSBarry Smith PetscFunctionBegin; 450289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 45171044d3cSBarry Smith /* this is a hack fix, should have another version without the second BLASdot */ 4522dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 453289bc588SBarry Smith } 4541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4551ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 456b965ef7fSBarry Smith its = its*lits; 45777431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 458289bc588SBarry Smith while (its--) { 459fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 460289bc588SBarry Smith for (i=0; i<m; i++) { 461aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 462f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 463f1747703SBarry Smith not happy about returning a double complex */ 46413f74950SBarry Smith PetscInt _i; 46587828ca2SBarry Smith PetscScalar sum = b[i]; 466f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4673f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 468f1747703SBarry Smith } 469f1747703SBarry Smith xt = sum; 470f1747703SBarry Smith #else 47171044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 472f1747703SBarry Smith #endif 47355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 474289bc588SBarry Smith } 475289bc588SBarry Smith } 476fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 477289bc588SBarry Smith for (i=m-1; i>=0; i--) { 478aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 479f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 480f1747703SBarry Smith not happy about returning a double complex */ 48113f74950SBarry Smith PetscInt _i; 48287828ca2SBarry Smith PetscScalar sum = b[i]; 483f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4843f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 485f1747703SBarry Smith } 486f1747703SBarry Smith xt = sum; 487f1747703SBarry Smith #else 48871044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 489f1747703SBarry Smith #endif 49055a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 491289bc588SBarry Smith } 492289bc588SBarry Smith } 493289bc588SBarry Smith } 4941ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 4951ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 497289bc588SBarry Smith } 498289bc588SBarry Smith 499289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5004a2ae208SSatish Balay #undef __FUNCT__ 5014a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense" 502dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 503289bc588SBarry Smith { 504c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 50587828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 506dfbe8321SBarry Smith PetscErrorCode ierr; 5070805154bSBarry Smith PetscBLASInt m, n,_One=1; 508ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 5093a40ed3dSBarry Smith 5103a40ed3dSBarry Smith PetscFunctionBegin; 5110805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 5120805154bSBarry Smith n = PetscBLASIntCast(A->cmap.n); 513899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 5141ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5151ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 51671044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One); 5171ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5181ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 519899cda47SBarry Smith ierr = PetscLogFlops(2*A->rmap.n*A->cmap.n - A->cmap.n);CHKERRQ(ierr); 5203a40ed3dSBarry Smith PetscFunctionReturn(0); 521289bc588SBarry Smith } 5226ee01492SSatish Balay 5234a2ae208SSatish Balay #undef __FUNCT__ 5244a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense" 525dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 526289bc588SBarry Smith { 527c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 52887828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0; 529dfbe8321SBarry Smith PetscErrorCode ierr; 5300805154bSBarry Smith PetscBLASInt m, n, _One=1; 5313a40ed3dSBarry Smith 5323a40ed3dSBarry Smith PetscFunctionBegin; 5330805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 5340805154bSBarry Smith n = PetscBLASIntCast(A->cmap.n); 535899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 5361ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5371ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 53871044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One); 5391ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5401ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 541899cda47SBarry Smith ierr = PetscLogFlops(2*A->rmap.n*A->cmap.n - A->rmap.n);CHKERRQ(ierr); 5423a40ed3dSBarry Smith PetscFunctionReturn(0); 543289bc588SBarry Smith } 5446ee01492SSatish Balay 5454a2ae208SSatish Balay #undef __FUNCT__ 5464a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense" 547dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 548289bc588SBarry Smith { 549c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 55087828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0; 551dfbe8321SBarry Smith PetscErrorCode ierr; 5520805154bSBarry Smith PetscBLASInt m, n, _One=1; 5533a40ed3dSBarry Smith 5543a40ed3dSBarry Smith PetscFunctionBegin; 5550805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 5560805154bSBarry Smith n = PetscBLASIntCast(A->cmap.n); 557899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 558600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 56171044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5621ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5631ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 564899cda47SBarry Smith ierr = PetscLogFlops(2*A->rmap.n*A->cmap.n);CHKERRQ(ierr); 5653a40ed3dSBarry Smith PetscFunctionReturn(0); 566289bc588SBarry Smith } 5676ee01492SSatish Balay 5684a2ae208SSatish Balay #undef __FUNCT__ 5694a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense" 570dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 571289bc588SBarry Smith { 572c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 57387828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 574dfbe8321SBarry Smith PetscErrorCode ierr; 5750805154bSBarry Smith PetscBLASInt m, n, _One=1; 57687828ca2SBarry Smith PetscScalar _DOne=1.0; 5773a40ed3dSBarry Smith 5783a40ed3dSBarry Smith PetscFunctionBegin; 5790805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 5800805154bSBarry Smith n = PetscBLASIntCast(A->cmap.n); 581899cda47SBarry Smith if (!A->rmap.n || !A->cmap.n) PetscFunctionReturn(0); 582600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5831ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5841ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 58571044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5861ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5871ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 588899cda47SBarry Smith ierr = PetscLogFlops(2*A->rmap.n*A->cmap.n);CHKERRQ(ierr); 5893a40ed3dSBarry Smith PetscFunctionReturn(0); 590289bc588SBarry Smith } 591289bc588SBarry Smith 592289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5934a2ae208SSatish Balay #undef __FUNCT__ 5944a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense" 59513f74950SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 596289bc588SBarry Smith { 597c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 59887828ca2SBarry Smith PetscScalar *v; 5996849ba73SBarry Smith PetscErrorCode ierr; 60013f74950SBarry Smith PetscInt i; 60167e560aaSBarry Smith 6023a40ed3dSBarry Smith PetscFunctionBegin; 603899cda47SBarry Smith *ncols = A->cmap.n; 604289bc588SBarry Smith if (cols) { 605899cda47SBarry Smith ierr = PetscMalloc((A->cmap.n+1)*sizeof(PetscInt),cols);CHKERRQ(ierr); 606899cda47SBarry Smith for (i=0; i<A->cmap.n; i++) (*cols)[i] = i; 607289bc588SBarry Smith } 608289bc588SBarry Smith if (vals) { 609899cda47SBarry Smith ierr = PetscMalloc((A->cmap.n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr); 610289bc588SBarry Smith v = mat->v + row; 611899cda47SBarry Smith for (i=0; i<A->cmap.n; i++) {(*vals)[i] = *v; v += mat->lda;} 612289bc588SBarry Smith } 6133a40ed3dSBarry Smith PetscFunctionReturn(0); 614289bc588SBarry Smith } 6156ee01492SSatish Balay 6164a2ae208SSatish Balay #undef __FUNCT__ 6174a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense" 61813f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 619289bc588SBarry Smith { 620dfbe8321SBarry Smith PetscErrorCode ierr; 621606d414cSSatish Balay PetscFunctionBegin; 622606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 623606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 6243a40ed3dSBarry Smith PetscFunctionReturn(0); 625289bc588SBarry Smith } 626289bc588SBarry Smith /* ----------------------------------------------------------------*/ 6274a2ae208SSatish Balay #undef __FUNCT__ 6284a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense" 62913f74950SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 630289bc588SBarry Smith { 631c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 63213f74950SBarry Smith PetscInt i,j,idx=0; 633d6dfbf8fSBarry Smith 6343a40ed3dSBarry Smith PetscFunctionBegin; 635289bc588SBarry Smith if (!mat->roworiented) { 636dbb450caSBarry Smith if (addv == INSERT_VALUES) { 637289bc588SBarry Smith for (j=0; j<n; j++) { 638cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 640899cda47SBarry Smith if (indexn[j] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap.n-1); 64158804f6dSBarry Smith #endif 642289bc588SBarry Smith for (i=0; i<m; i++) { 643cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 645899cda47SBarry Smith if (indexm[i] >= A->rmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap.n-1); 64658804f6dSBarry Smith #endif 647cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 648289bc588SBarry Smith } 649289bc588SBarry Smith } 6503a40ed3dSBarry Smith } else { 651289bc588SBarry Smith for (j=0; j<n; j++) { 652cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 654899cda47SBarry Smith if (indexn[j] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap.n-1); 65558804f6dSBarry Smith #endif 656289bc588SBarry Smith for (i=0; i<m; i++) { 657cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 659899cda47SBarry Smith if (indexm[i] >= A->rmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap.n-1); 66058804f6dSBarry Smith #endif 661cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 662289bc588SBarry Smith } 663289bc588SBarry Smith } 664289bc588SBarry Smith } 6653a40ed3dSBarry Smith } else { 666dbb450caSBarry Smith if (addv == INSERT_VALUES) { 667e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 668cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6692515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 670899cda47SBarry Smith if (indexm[i] >= A->rmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap.n-1); 67158804f6dSBarry Smith #endif 672e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 673cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 675899cda47SBarry Smith if (indexn[j] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap.n-1); 67658804f6dSBarry Smith #endif 677cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 678e8d4e0b9SBarry Smith } 679e8d4e0b9SBarry Smith } 6803a40ed3dSBarry Smith } else { 681289bc588SBarry Smith for (i=0; i<m; i++) { 682cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 684899cda47SBarry Smith if (indexm[i] >= A->rmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap.n-1); 68558804f6dSBarry Smith #endif 686289bc588SBarry Smith for (j=0; j<n; j++) { 687cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 689899cda47SBarry Smith if (indexn[j] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap.n-1); 69058804f6dSBarry Smith #endif 691cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 692289bc588SBarry Smith } 693289bc588SBarry Smith } 694289bc588SBarry Smith } 695e8d4e0b9SBarry Smith } 6963a40ed3dSBarry Smith PetscFunctionReturn(0); 697289bc588SBarry Smith } 698e8d4e0b9SBarry Smith 6994a2ae208SSatish Balay #undef __FUNCT__ 7004a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense" 70113f74950SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 702ae80bb75SLois Curfman McInnes { 703ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 70413f74950SBarry Smith PetscInt i,j; 705ae80bb75SLois Curfman McInnes 7063a40ed3dSBarry Smith PetscFunctionBegin; 707ae80bb75SLois Curfman McInnes /* row-oriented output */ 708ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 70997e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 710f12f8aa1SBarry Smith if (indexm[i] >= A->rmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap.n); 711ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 7126f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 7136f31f424SBarry Smith if (indexn[j] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap.n); 71497e567efSBarry Smith *v++ = mat->v[indexn[j]*mat->lda + indexm[i]]; 715ae80bb75SLois Curfman McInnes } 716ae80bb75SLois Curfman McInnes } 7173a40ed3dSBarry Smith PetscFunctionReturn(0); 718ae80bb75SLois Curfman McInnes } 719ae80bb75SLois Curfman McInnes 720289bc588SBarry Smith /* -----------------------------------------------------------------*/ 721289bc588SBarry Smith 722e090d566SSatish Balay #include "petscsys.h" 72388e32edaSLois Curfman McInnes 7244a2ae208SSatish Balay #undef __FUNCT__ 7254a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense" 726a313700dSBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer, const MatType type,Mat *A) 72788e32edaSLois Curfman McInnes { 72888e32edaSLois Curfman McInnes Mat_SeqDense *a; 72988e32edaSLois Curfman McInnes Mat B; 7306849ba73SBarry Smith PetscErrorCode ierr; 73113f74950SBarry Smith PetscInt *scols,i,j,nz,header[4]; 73213f74950SBarry Smith int fd; 73313f74950SBarry Smith PetscMPIInt size; 73413f74950SBarry Smith PetscInt *rowlengths = 0,M,N,*cols; 73587828ca2SBarry Smith PetscScalar *vals,*svals,*v,*w; 73619bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 73788e32edaSLois Curfman McInnes 7383a40ed3dSBarry Smith PetscFunctionBegin; 739d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 74029bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 741b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 7420752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 743552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object"); 74488e32edaSLois Curfman McInnes M = header[1]; N = header[2]; nz = header[3]; 74588e32edaSLois Curfman McInnes 74690ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */ 747f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 748f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 749be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7505c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 75190ace30eSBarry Smith B = *A; 75290ace30eSBarry Smith a = (Mat_SeqDense*)B->data; 7534a41a4d3SSatish Balay v = a->v; 7544a41a4d3SSatish Balay /* Allocate some temp space to read in the values and then flip them 7554a41a4d3SSatish Balay from row major to column major */ 756b72907f3SBarry Smith ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr); 75790ace30eSBarry Smith /* read in nonzero values */ 7584a41a4d3SSatish Balay ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr); 7594a41a4d3SSatish Balay /* now flip the values and store them in the matrix*/ 7604a41a4d3SSatish Balay for (j=0; j<N; j++) { 7614a41a4d3SSatish Balay for (i=0; i<M; i++) { 7624a41a4d3SSatish Balay *v++ =w[i*N+j]; 7634a41a4d3SSatish Balay } 7644a41a4d3SSatish Balay } 765606d414cSSatish Balay ierr = PetscFree(w);CHKERRQ(ierr); 7666d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7676d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 76890ace30eSBarry Smith } else { 76988e32edaSLois Curfman McInnes /* read row lengths */ 77013f74950SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 7710752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 77288e32edaSLois Curfman McInnes 77388e32edaSLois Curfman McInnes /* create our matrix */ 774f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 775f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 776be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7775c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 77888e32edaSLois Curfman McInnes B = *A; 77988e32edaSLois Curfman McInnes a = (Mat_SeqDense*)B->data; 78088e32edaSLois Curfman McInnes v = a->v; 78188e32edaSLois Curfman McInnes 78288e32edaSLois Curfman McInnes /* read column indices and nonzeros */ 78313f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&scols);CHKERRQ(ierr); 784b0a32e0cSBarry Smith cols = scols; 7850752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 78687828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr); 787b0a32e0cSBarry Smith vals = svals; 7880752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 78988e32edaSLois Curfman McInnes 79088e32edaSLois Curfman McInnes /* insert into matrix */ 79188e32edaSLois Curfman McInnes for (i=0; i<M; i++) { 79288e32edaSLois Curfman McInnes for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j]; 79388e32edaSLois Curfman McInnes svals += rowlengths[i]; scols += rowlengths[i]; 79488e32edaSLois Curfman McInnes } 795606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 796606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 797606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 79888e32edaSLois Curfman McInnes 7996d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8006d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 80190ace30eSBarry Smith } 8023a40ed3dSBarry Smith PetscFunctionReturn(0); 80388e32edaSLois Curfman McInnes } 80488e32edaSLois Curfman McInnes 805e090d566SSatish Balay #include "petscsys.h" 806932b0c3eSLois Curfman McInnes 8074a2ae208SSatish Balay #undef __FUNCT__ 8084a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII" 8096849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 810289bc588SBarry Smith { 811932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 812dfbe8321SBarry Smith PetscErrorCode ierr; 81313f74950SBarry Smith PetscInt i,j; 8142dcb1b2aSMatthew Knepley const char *name; 81587828ca2SBarry Smith PetscScalar *v; 816f3ef73ceSBarry Smith PetscViewerFormat format; 8175f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 8185f481a85SSatish Balay PetscTruth allreal = PETSC_TRUE; 8195f481a85SSatish Balay #endif 820932b0c3eSLois Curfman McInnes 8213a40ed3dSBarry Smith PetscFunctionBegin; 822435da068SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 823b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 824456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 8253a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 826fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 827b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 828899cda47SBarry Smith for (i=0; i<A->rmap.n; i++) { 82944cd7ae7SLois Curfman McInnes v = a->v + i; 83077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 831899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 832aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 833329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 834a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 835329f5518SBarry Smith } else if (PetscRealPart(*v)) { 836a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,PetscRealPart(*v));CHKERRQ(ierr); 8376831982aSBarry Smith } 83880cd9d93SLois Curfman McInnes #else 8396831982aSBarry Smith if (*v) { 840a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,*v);CHKERRQ(ierr); 8416831982aSBarry Smith } 84280cd9d93SLois Curfman McInnes #endif 8431b807ce4Svictorle v += a->lda; 84480cd9d93SLois Curfman McInnes } 845b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 84680cd9d93SLois Curfman McInnes } 847b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 8483a40ed3dSBarry Smith } else { 849b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 850aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 85147989497SBarry Smith /* determine if matrix has all real values */ 85247989497SBarry Smith v = a->v; 853899cda47SBarry Smith for (i=0; i<A->rmap.n*A->cmap.n; i++) { 854ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;} 85547989497SBarry Smith } 85647989497SBarry Smith #endif 857fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 8583a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 859899cda47SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap.n,A->cmap.n);CHKERRQ(ierr); 860899cda47SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap.n,A->cmap.n);CHKERRQ(ierr); 861fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 862ffac6cdbSBarry Smith } 863ffac6cdbSBarry Smith 864899cda47SBarry Smith for (i=0; i<A->rmap.n; i++) { 865932b0c3eSLois Curfman McInnes v = a->v + i; 866899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 867aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 86847989497SBarry Smith if (allreal) { 869f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr); 87047989497SBarry Smith } else { 871f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 87247989497SBarry Smith } 873289bc588SBarry Smith #else 874f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr); 875289bc588SBarry Smith #endif 8761b807ce4Svictorle v += a->lda; 877289bc588SBarry Smith } 878b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 879289bc588SBarry Smith } 880fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 881b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 882ffac6cdbSBarry Smith } 883b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 884da3a660dSBarry Smith } 885b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8863a40ed3dSBarry Smith PetscFunctionReturn(0); 887289bc588SBarry Smith } 888289bc588SBarry Smith 8894a2ae208SSatish Balay #undef __FUNCT__ 8904a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary" 8916849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer) 892932b0c3eSLois Curfman McInnes { 893932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 8946849ba73SBarry Smith PetscErrorCode ierr; 89513f74950SBarry Smith int fd; 896899cda47SBarry Smith PetscInt ict,j,n = A->cmap.n,m = A->rmap.n,i,*col_lens,nz = m*n; 89787828ca2SBarry Smith PetscScalar *v,*anonz,*vals; 898f3ef73ceSBarry Smith PetscViewerFormat format; 899932b0c3eSLois Curfman McInnes 9003a40ed3dSBarry Smith PetscFunctionBegin; 901b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 90290ace30eSBarry Smith 903b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 904fb9695e5SSatish Balay if (format == PETSC_VIEWER_BINARY_NATIVE) { 90590ace30eSBarry Smith /* store the matrix as a dense matrix */ 90613f74950SBarry Smith ierr = PetscMalloc(4*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 907552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 90890ace30eSBarry Smith col_lens[1] = m; 90990ace30eSBarry Smith col_lens[2] = n; 91090ace30eSBarry Smith col_lens[3] = MATRIX_BINARY_FORMAT_DENSE; 9116f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 912606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 91390ace30eSBarry Smith 91490ace30eSBarry Smith /* write out matrix, by rows */ 91587828ca2SBarry Smith ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 91690ace30eSBarry Smith v = a->v; 91790ace30eSBarry Smith for (j=0; j<n; j++) { 918578230a0SSatish Balay for (i=0; i<m; i++) { 919578230a0SSatish Balay vals[j + i*n] = *v++; 92090ace30eSBarry Smith } 92190ace30eSBarry Smith } 9226f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 923606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 92490ace30eSBarry Smith } else { 92513f74950SBarry Smith ierr = PetscMalloc((4+nz)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 926552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 927932b0c3eSLois Curfman McInnes col_lens[1] = m; 928932b0c3eSLois Curfman McInnes col_lens[2] = n; 929932b0c3eSLois Curfman McInnes col_lens[3] = nz; 930932b0c3eSLois Curfman McInnes 931932b0c3eSLois Curfman McInnes /* store lengths of each row and write (including header) to file */ 932932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) col_lens[4+i] = n; 9336f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 934932b0c3eSLois Curfman McInnes 935932b0c3eSLois Curfman McInnes /* Possibly should write in smaller increments, not whole matrix at once? */ 936932b0c3eSLois Curfman McInnes /* store column indices (zero start index) */ 937932b0c3eSLois Curfman McInnes ict = 0; 938932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 939932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) col_lens[ict++] = j; 940932b0c3eSLois Curfman McInnes } 9416f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 942606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 943932b0c3eSLois Curfman McInnes 944932b0c3eSLois Curfman McInnes /* store nonzero values */ 94587828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr); 946932b0c3eSLois Curfman McInnes ict = 0; 947932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 948932b0c3eSLois Curfman McInnes v = a->v + i; 949932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) { 9501b807ce4Svictorle anonz[ict++] = *v; v += a->lda; 951932b0c3eSLois Curfman McInnes } 952932b0c3eSLois Curfman McInnes } 9536f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 954606d414cSSatish Balay ierr = PetscFree(anonz);CHKERRQ(ierr); 95590ace30eSBarry Smith } 9563a40ed3dSBarry Smith PetscFunctionReturn(0); 957932b0c3eSLois Curfman McInnes } 958932b0c3eSLois Curfman McInnes 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom" 961dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 962f1af5d2fSBarry Smith { 963f1af5d2fSBarry Smith Mat A = (Mat) Aa; 964f1af5d2fSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 9656849ba73SBarry Smith PetscErrorCode ierr; 966899cda47SBarry Smith PetscInt m = A->rmap.n,n = A->cmap.n,color,i,j; 96787828ca2SBarry Smith PetscScalar *v = a->v; 968b0a32e0cSBarry Smith PetscViewer viewer; 969b0a32e0cSBarry Smith PetscDraw popup; 970329f5518SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0; 971f3ef73ceSBarry Smith PetscViewerFormat format; 972f1af5d2fSBarry Smith 973f1af5d2fSBarry Smith PetscFunctionBegin; 974f1af5d2fSBarry Smith 975f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 976b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 977b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 978f1af5d2fSBarry Smith 979f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 980fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 981f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 982b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 983f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 984f1af5d2fSBarry Smith x_l = j; 985f1af5d2fSBarry Smith x_r = x_l + 1.0; 986f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 987f1af5d2fSBarry Smith y_l = m - i - 1.0; 988f1af5d2fSBarry Smith y_r = y_l + 1.0; 989f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX) 990329f5518SBarry Smith if (PetscRealPart(v[j*m+i]) > 0.) { 991b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 992329f5518SBarry Smith } else if (PetscRealPart(v[j*m+i]) < 0.) { 993b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 994f1af5d2fSBarry Smith } else { 995f1af5d2fSBarry Smith continue; 996f1af5d2fSBarry Smith } 997f1af5d2fSBarry Smith #else 998f1af5d2fSBarry Smith if (v[j*m+i] > 0.) { 999b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 1000f1af5d2fSBarry Smith } else if (v[j*m+i] < 0.) { 1001b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1002f1af5d2fSBarry Smith } else { 1003f1af5d2fSBarry Smith continue; 1004f1af5d2fSBarry Smith } 1005f1af5d2fSBarry Smith #endif 1006b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1007f1af5d2fSBarry Smith } 1008f1af5d2fSBarry Smith } 1009f1af5d2fSBarry Smith } else { 1010f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1011f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1012f1af5d2fSBarry Smith for(i = 0; i < m*n; i++) { 1013f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1014f1af5d2fSBarry Smith } 1015b0a32e0cSBarry Smith scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv; 1016b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1017b0a32e0cSBarry Smith if (popup) {ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);} 1018f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 1019f1af5d2fSBarry Smith x_l = j; 1020f1af5d2fSBarry Smith x_r = x_l + 1.0; 1021f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 1022f1af5d2fSBarry Smith y_l = m - i - 1.0; 1023f1af5d2fSBarry Smith y_r = y_l + 1.0; 1024b0a32e0cSBarry Smith color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i])); 1025b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1026f1af5d2fSBarry Smith } 1027f1af5d2fSBarry Smith } 1028f1af5d2fSBarry Smith } 1029f1af5d2fSBarry Smith PetscFunctionReturn(0); 1030f1af5d2fSBarry Smith } 1031f1af5d2fSBarry Smith 10324a2ae208SSatish Balay #undef __FUNCT__ 10334a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw" 1034dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1035f1af5d2fSBarry Smith { 1036b0a32e0cSBarry Smith PetscDraw draw; 1037f1af5d2fSBarry Smith PetscTruth isnull; 1038329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1039dfbe8321SBarry Smith PetscErrorCode ierr; 1040f1af5d2fSBarry Smith 1041f1af5d2fSBarry Smith PetscFunctionBegin; 1042b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1043b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1044abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1045f1af5d2fSBarry Smith 1046f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1047899cda47SBarry Smith xr = A->cmap.n; yr = A->rmap.n; h = yr/10.0; w = xr/10.0; 1048f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1049b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1050b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 1051f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 1052f1af5d2fSBarry Smith PetscFunctionReturn(0); 1053f1af5d2fSBarry Smith } 1054f1af5d2fSBarry Smith 10554a2ae208SSatish Balay #undef __FUNCT__ 10564a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense" 1057dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1058932b0c3eSLois Curfman McInnes { 1059dfbe8321SBarry Smith PetscErrorCode ierr; 10606805f65bSBarry Smith PetscTruth iascii,isbinary,isdraw; 1061932b0c3eSLois Curfman McInnes 10623a40ed3dSBarry Smith PetscFunctionBegin; 106332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1064fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1065fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10660f5bd95cSBarry Smith 1067c45a1595SBarry Smith if (iascii) { 1068c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 10690f5bd95cSBarry Smith } else if (isbinary) { 10703a40ed3dSBarry Smith ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr); 1071f1af5d2fSBarry Smith } else if (isdraw) { 1072f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 10735cd90555SBarry Smith } else { 1074958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name); 1075932b0c3eSLois Curfman McInnes } 10763a40ed3dSBarry Smith PetscFunctionReturn(0); 1077932b0c3eSLois Curfman McInnes } 1078289bc588SBarry Smith 10794a2ae208SSatish Balay #undef __FUNCT__ 10804a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense" 1081dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat) 1082289bc588SBarry Smith { 1083ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1084dfbe8321SBarry Smith PetscErrorCode ierr; 108590f02eecSBarry Smith 10863a40ed3dSBarry Smith PetscFunctionBegin; 1087aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1088899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap.n,mat->cmap.n); 1089a5a9c739SBarry Smith #endif 109005b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 10916857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1092606d414cSSatish Balay ierr = PetscFree(l);CHKERRQ(ierr); 1093dbd8c25aSHong Zhang 1094dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1095901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 10964ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 10974ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 10984ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 10993a40ed3dSBarry Smith PetscFunctionReturn(0); 1100289bc588SBarry Smith } 1101289bc588SBarry Smith 11024a2ae208SSatish Balay #undef __FUNCT__ 11034a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense" 1104fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1105289bc588SBarry Smith { 1106c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 11076849ba73SBarry Smith PetscErrorCode ierr; 110813f74950SBarry Smith PetscInt k,j,m,n,M; 110987828ca2SBarry Smith PetscScalar *v,tmp; 111048b35521SBarry Smith 11113a40ed3dSBarry Smith PetscFunctionBegin; 1112899cda47SBarry Smith v = mat->v; m = A->rmap.n; M = mat->lda; n = A->cmap.n; 1113e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && *matout == A) { /* in place transpose */ 1114a5ce6ee0Svictorle if (m != n) { 1115634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place"); 1116d64ed03dSBarry Smith } else { 1117d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1118289bc588SBarry Smith for (k=0; k<j; k++) { 11191b807ce4Svictorle tmp = v[j + k*M]; 11201b807ce4Svictorle v[j + k*M] = v[k + j*M]; 11211b807ce4Svictorle v[k + j*M] = tmp; 1122289bc588SBarry Smith } 1123289bc588SBarry Smith } 1124d64ed03dSBarry Smith } 11253a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1126d3e5ee88SLois Curfman McInnes Mat tmat; 1127ec8511deSBarry Smith Mat_SeqDense *tmatd; 112887828ca2SBarry Smith PetscScalar *v2; 1129ea709b57SSatish Balay 1130fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 11317adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&tmat);CHKERRQ(ierr); 1132899cda47SBarry Smith ierr = MatSetSizes(tmat,A->cmap.n,A->rmap.n,A->cmap.n,A->rmap.n);CHKERRQ(ierr); 11337adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 11345c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr); 1135fc4dec0aSBarry Smith } else { 1136fc4dec0aSBarry Smith tmat = *matout; 1137fc4dec0aSBarry Smith } 1138ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 11390de55854SLois Curfman McInnes v = mat->v; v2 = tmatd->v; 1140d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 11411b807ce4Svictorle for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M]; 1142d3e5ee88SLois Curfman McInnes } 11436d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11446d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1145d3e5ee88SLois Curfman McInnes *matout = tmat; 114648b35521SBarry Smith } 11473a40ed3dSBarry Smith PetscFunctionReturn(0); 1148289bc588SBarry Smith } 1149289bc588SBarry Smith 11504a2ae208SSatish Balay #undef __FUNCT__ 11514a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense" 1152dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg) 1153289bc588SBarry Smith { 1154c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1155c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 115613f74950SBarry Smith PetscInt i,j; 115787828ca2SBarry Smith PetscScalar *v1 = mat1->v,*v2 = mat2->v; 11589ea5d5aeSSatish Balay 11593a40ed3dSBarry Smith PetscFunctionBegin; 1160899cda47SBarry Smith if (A1->rmap.n != A2->rmap.n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1161899cda47SBarry Smith if (A1->cmap.n != A2->cmap.n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1162899cda47SBarry Smith for (i=0; i<A1->rmap.n; i++) { 11631b807ce4Svictorle v1 = mat1->v+i; v2 = mat2->v+i; 1164899cda47SBarry Smith for (j=0; j<A1->cmap.n; j++) { 11653a40ed3dSBarry Smith if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 11661b807ce4Svictorle v1 += mat1->lda; v2 += mat2->lda; 11671b807ce4Svictorle } 1168289bc588SBarry Smith } 116977c4ece6SBarry Smith *flg = PETSC_TRUE; 11703a40ed3dSBarry Smith PetscFunctionReturn(0); 1171289bc588SBarry Smith } 1172289bc588SBarry Smith 11734a2ae208SSatish Balay #undef __FUNCT__ 11744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense" 1175dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1176289bc588SBarry Smith { 1177c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1178dfbe8321SBarry Smith PetscErrorCode ierr; 117913f74950SBarry Smith PetscInt i,n,len; 118087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 118144cd7ae7SLois Curfman McInnes 11823a40ed3dSBarry Smith PetscFunctionBegin; 11832dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 11847a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 11851ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1186899cda47SBarry Smith len = PetscMin(A->rmap.n,A->cmap.n); 1187899cda47SBarry Smith if (n != A->rmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 118844cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 11891b807ce4Svictorle x[i] = mat->v[i*mat->lda + i]; 1190289bc588SBarry Smith } 11911ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 11923a40ed3dSBarry Smith PetscFunctionReturn(0); 1193289bc588SBarry Smith } 1194289bc588SBarry Smith 11954a2ae208SSatish Balay #undef __FUNCT__ 11964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense" 1197dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1198289bc588SBarry Smith { 1199c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 120087828ca2SBarry Smith PetscScalar *l,*r,x,*v; 1201dfbe8321SBarry Smith PetscErrorCode ierr; 1202899cda47SBarry Smith PetscInt i,j,m = A->rmap.n,n = A->cmap.n; 120355659b69SBarry Smith 12043a40ed3dSBarry Smith PetscFunctionBegin; 120528988994SBarry Smith if (ll) { 12067a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 12071ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 1208899cda47SBarry Smith if (m != A->rmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1209da3a660dSBarry Smith for (i=0; i<m; i++) { 1210da3a660dSBarry Smith x = l[i]; 1211da3a660dSBarry Smith v = mat->v + i; 1212da3a660dSBarry Smith for (j=0; j<n; j++) { (*v) *= x; v+= m;} 1213da3a660dSBarry Smith } 12141ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 1215efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1216da3a660dSBarry Smith } 121728988994SBarry Smith if (rr) { 12187a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 12191ebc52fbSHong Zhang ierr = VecGetArray(rr,&r);CHKERRQ(ierr); 1220899cda47SBarry Smith if (n != A->cmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1221da3a660dSBarry Smith for (i=0; i<n; i++) { 1222da3a660dSBarry Smith x = r[i]; 1223da3a660dSBarry Smith v = mat->v + i*m; 1224da3a660dSBarry Smith for (j=0; j<m; j++) { (*v++) *= x;} 1225da3a660dSBarry Smith } 12261ebc52fbSHong Zhang ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr); 1227efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1228da3a660dSBarry Smith } 12293a40ed3dSBarry Smith PetscFunctionReturn(0); 1230289bc588SBarry Smith } 1231289bc588SBarry Smith 12324a2ae208SSatish Balay #undef __FUNCT__ 12334a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense" 1234dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1235289bc588SBarry Smith { 1236c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 123787828ca2SBarry Smith PetscScalar *v = mat->v; 1238329f5518SBarry Smith PetscReal sum = 0.0; 1239899cda47SBarry Smith PetscInt lda=mat->lda,m=A->rmap.n,i,j; 1240efee365bSSatish Balay PetscErrorCode ierr; 124155659b69SBarry Smith 12423a40ed3dSBarry Smith PetscFunctionBegin; 1243289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1244a5ce6ee0Svictorle if (lda>m) { 1245899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 1246a5ce6ee0Svictorle v = mat->v+j*lda; 1247a5ce6ee0Svictorle for (i=0; i<m; i++) { 1248a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX) 1249a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1250a5ce6ee0Svictorle #else 1251a5ce6ee0Svictorle sum += (*v)*(*v); v++; 1252a5ce6ee0Svictorle #endif 1253a5ce6ee0Svictorle } 1254a5ce6ee0Svictorle } 1255a5ce6ee0Svictorle } else { 1256899cda47SBarry Smith for (i=0; i<A->cmap.n*A->rmap.n; i++) { 1257aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1258329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1259289bc588SBarry Smith #else 1260289bc588SBarry Smith sum += (*v)*(*v); v++; 1261289bc588SBarry Smith #endif 1262289bc588SBarry Smith } 1263a5ce6ee0Svictorle } 1264064f8208SBarry Smith *nrm = sqrt(sum); 1265899cda47SBarry Smith ierr = PetscLogFlops(2*A->cmap.n*A->rmap.n);CHKERRQ(ierr); 12663a40ed3dSBarry Smith } else if (type == NORM_1) { 1267064f8208SBarry Smith *nrm = 0.0; 1268899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 12691b807ce4Svictorle v = mat->v + j*mat->lda; 1270289bc588SBarry Smith sum = 0.0; 1271899cda47SBarry Smith for (i=0; i<A->rmap.n; i++) { 127233a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1273289bc588SBarry Smith } 1274064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1275289bc588SBarry Smith } 1276899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 12773a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1278064f8208SBarry Smith *nrm = 0.0; 1279899cda47SBarry Smith for (j=0; j<A->rmap.n; j++) { 1280289bc588SBarry Smith v = mat->v + j; 1281289bc588SBarry Smith sum = 0.0; 1282899cda47SBarry Smith for (i=0; i<A->cmap.n; i++) { 12831b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1284289bc588SBarry Smith } 1285064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1286289bc588SBarry Smith } 1287899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 12883a40ed3dSBarry Smith } else { 128929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No two norm"); 1290289bc588SBarry Smith } 12913a40ed3dSBarry Smith PetscFunctionReturn(0); 1292289bc588SBarry Smith } 1293289bc588SBarry Smith 12944a2ae208SSatish Balay #undef __FUNCT__ 12954a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense" 12964e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscTruth flg) 1297289bc588SBarry Smith { 1298c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 129963ba0a88SBarry Smith PetscErrorCode ierr; 130067e560aaSBarry Smith 13013a40ed3dSBarry Smith PetscFunctionBegin; 1302b5a2b587SKris Buschelman switch (op) { 1303b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 13044e0d8c25SBarry Smith aij->roworiented = flg; 1305b5a2b587SKris Buschelman break; 1306512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1307b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 13083971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 13094e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1310b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1311b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 131277e54ba9SKris Buschelman case MAT_SYMMETRIC: 131377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13149a4540c5SBarry Smith case MAT_HERMITIAN: 13159a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1316600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 1317290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131877e54ba9SKris Buschelman break; 1319b5a2b587SKris Buschelman default: 1320600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 13213a40ed3dSBarry Smith } 13223a40ed3dSBarry Smith PetscFunctionReturn(0); 1323289bc588SBarry Smith } 1324289bc588SBarry Smith 13254a2ae208SSatish Balay #undef __FUNCT__ 13264a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense" 1327dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A) 13286f0a148fSBarry Smith { 1329ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 13306849ba73SBarry Smith PetscErrorCode ierr; 1331899cda47SBarry Smith PetscInt lda=l->lda,m=A->rmap.n,j; 13323a40ed3dSBarry Smith 13333a40ed3dSBarry Smith PetscFunctionBegin; 1334a5ce6ee0Svictorle if (lda>m) { 1335899cda47SBarry Smith for (j=0; j<A->cmap.n; j++) { 1336a5ce6ee0Svictorle ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 1337a5ce6ee0Svictorle } 1338a5ce6ee0Svictorle } else { 1339899cda47SBarry Smith ierr = PetscMemzero(l->v,A->rmap.n*A->cmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 1340a5ce6ee0Svictorle } 13413a40ed3dSBarry Smith PetscFunctionReturn(0); 13426f0a148fSBarry Smith } 13436f0a148fSBarry Smith 13444a2ae208SSatish Balay #undef __FUNCT__ 13454a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense" 1346f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 13476f0a148fSBarry Smith { 1348ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1349899cda47SBarry Smith PetscInt n = A->cmap.n,i,j; 135087828ca2SBarry Smith PetscScalar *slot; 135155659b69SBarry Smith 13523a40ed3dSBarry Smith PetscFunctionBegin; 13536f0a148fSBarry Smith for (i=0; i<N; i++) { 13546f0a148fSBarry Smith slot = l->v + rows[i]; 13556f0a148fSBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += n;} 13566f0a148fSBarry Smith } 1357f4df32b1SMatthew Knepley if (diag != 0.0) { 13586f0a148fSBarry Smith for (i=0; i<N; i++) { 13596f0a148fSBarry Smith slot = l->v + (n+1)*rows[i]; 1360f4df32b1SMatthew Knepley *slot = diag; 13616f0a148fSBarry Smith } 13626f0a148fSBarry Smith } 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 13646f0a148fSBarry Smith } 1365557bce09SLois Curfman McInnes 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense" 1368dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[]) 136964e87e97SBarry Smith { 1370c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13713a40ed3dSBarry Smith 13723a40ed3dSBarry Smith PetscFunctionBegin; 1373899cda47SBarry Smith if (mat->lda != A->rmap.n) SETERRQ(PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows"); 137464e87e97SBarry Smith *array = mat->v; 13753a40ed3dSBarry Smith PetscFunctionReturn(0); 137664e87e97SBarry Smith } 13770754003eSLois Curfman McInnes 13784a2ae208SSatish Balay #undef __FUNCT__ 13794a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense" 1380dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[]) 1381ff14e315SSatish Balay { 13823a40ed3dSBarry Smith PetscFunctionBegin; 138309b544d4SBarry Smith *array = 0; /* user cannot accidently use the array later */ 13843a40ed3dSBarry Smith PetscFunctionReturn(0); 1385ff14e315SSatish Balay } 13860754003eSLois Curfman McInnes 13874a2ae208SSatish Balay #undef __FUNCT__ 13884a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense" 138913f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 13900754003eSLois Curfman McInnes { 1391c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13926849ba73SBarry Smith PetscErrorCode ierr; 139321a2c019SBarry Smith PetscInt i,j,*irow,*icol,nrows,ncols; 139487828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 13950754003eSLois Curfman McInnes Mat newmat; 13960754003eSLois Curfman McInnes 13973a40ed3dSBarry Smith PetscFunctionBegin; 139878b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 139978b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 1400e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 1401e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 14020754003eSLois Curfman McInnes 1403182d2002SSatish Balay /* Check submatrixcall */ 1404182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 140513f74950SBarry Smith PetscInt n_cols,n_rows; 1406182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 140721a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 140821a2c019SBarry Smith /* resize the result result matrix to match number of requested rows/columns */ 140921a2c019SBarry Smith ierr = MatSetSizes(*B,nrows,nrows,nrows,nrows);CHKERRQ(ierr); 141021a2c019SBarry Smith } 1411182d2002SSatish Balay newmat = *B; 1412182d2002SSatish Balay } else { 14130754003eSLois Curfman McInnes /* Create and fill new matrix */ 14147adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 1415f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 14167adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 14175c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 1418182d2002SSatish Balay } 1419182d2002SSatish Balay 1420182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 1421182d2002SSatish Balay bv = ((Mat_SeqDense*)newmat->data)->v; 1422182d2002SSatish Balay 1423182d2002SSatish Balay for (i=0; i<ncols; i++) { 14246de62eeeSBarry Smith av = v + mat->lda*icol[i]; 1425182d2002SSatish Balay for (j=0; j<nrows; j++) { 1426182d2002SSatish Balay *bv++ = av[irow[j]]; 14270754003eSLois Curfman McInnes } 14280754003eSLois Curfman McInnes } 1429182d2002SSatish Balay 1430182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 14316d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14326d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14330754003eSLois Curfman McInnes 14340754003eSLois Curfman McInnes /* Free work space */ 143578b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 143678b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 1437182d2002SSatish Balay *B = newmat; 14383a40ed3dSBarry Smith PetscFunctionReturn(0); 14390754003eSLois Curfman McInnes } 14400754003eSLois Curfman McInnes 14414a2ae208SSatish Balay #undef __FUNCT__ 14424a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense" 144313f74950SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1444905e6a2fSBarry Smith { 14456849ba73SBarry Smith PetscErrorCode ierr; 144613f74950SBarry Smith PetscInt i; 1447905e6a2fSBarry Smith 14483a40ed3dSBarry Smith PetscFunctionBegin; 1449905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 1450b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr); 1451905e6a2fSBarry Smith } 1452905e6a2fSBarry Smith 1453905e6a2fSBarry Smith for (i=0; i<n; i++) { 14546a6a5d1dSBarry Smith ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr); 1455905e6a2fSBarry Smith } 14563a40ed3dSBarry Smith PetscFunctionReturn(0); 1457905e6a2fSBarry Smith } 1458905e6a2fSBarry Smith 14594a2ae208SSatish Balay #undef __FUNCT__ 1460c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyBegin_SeqDense" 1461c0aa2d19SHong Zhang PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 1462c0aa2d19SHong Zhang { 1463c0aa2d19SHong Zhang PetscFunctionBegin; 1464c0aa2d19SHong Zhang PetscFunctionReturn(0); 1465c0aa2d19SHong Zhang } 1466c0aa2d19SHong Zhang 1467c0aa2d19SHong Zhang #undef __FUNCT__ 1468c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyEnd_SeqDense" 1469c0aa2d19SHong Zhang PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 1470c0aa2d19SHong Zhang { 1471c0aa2d19SHong Zhang PetscFunctionBegin; 1472c0aa2d19SHong Zhang PetscFunctionReturn(0); 1473c0aa2d19SHong Zhang } 1474c0aa2d19SHong Zhang 1475c0aa2d19SHong Zhang #undef __FUNCT__ 14764a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense" 1477dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 14784b0e389bSBarry Smith { 14794b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data; 14806849ba73SBarry Smith PetscErrorCode ierr; 1481899cda47SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap.n,n=A->cmap.n, j; 14823a40ed3dSBarry Smith 14833a40ed3dSBarry Smith PetscFunctionBegin; 148433f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 148533f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 1486cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 14873a40ed3dSBarry Smith PetscFunctionReturn(0); 14883a40ed3dSBarry Smith } 1489899cda47SBarry Smith if (m != B->rmap.n || n != B->cmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 1490a5ce6ee0Svictorle if (lda1>m || lda2>m) { 14910dbb7854Svictorle for (j=0; j<n; j++) { 1492a5ce6ee0Svictorle ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 1493a5ce6ee0Svictorle } 1494a5ce6ee0Svictorle } else { 1495899cda47SBarry Smith ierr = PetscMemcpy(b->v,a->v,A->rmap.n*A->cmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 1496a5ce6ee0Svictorle } 1497273d9f13SBarry Smith PetscFunctionReturn(0); 1498273d9f13SBarry Smith } 1499273d9f13SBarry Smith 15004a2ae208SSatish Balay #undef __FUNCT__ 15014a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense" 1502dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A) 1503273d9f13SBarry Smith { 1504dfbe8321SBarry Smith PetscErrorCode ierr; 1505273d9f13SBarry Smith 1506273d9f13SBarry Smith PetscFunctionBegin; 1507273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr); 15083a40ed3dSBarry Smith PetscFunctionReturn(0); 15094b0e389bSBarry Smith } 15104b0e389bSBarry Smith 1511284134d9SBarry Smith #undef __FUNCT__ 1512284134d9SBarry Smith #define __FUNCT__ "MatSetSizes_SeqDense" 1513284134d9SBarry Smith PetscErrorCode MatSetSizes_SeqDense(Mat A,PetscInt m,PetscInt n,PetscInt M,PetscInt N) 1514284134d9SBarry Smith { 1515284134d9SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 151621a2c019SBarry Smith PetscErrorCode ierr; 1517284134d9SBarry Smith PetscFunctionBegin; 151821a2c019SBarry Smith /* this will not be called before lda, Mmax, and Nmax have been set */ 1519284134d9SBarry Smith m = PetscMax(m,M); 1520284134d9SBarry Smith n = PetscMax(n,N); 152121a2c019SBarry Smith if (m > a->Mmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number rows of dense matrix larger then its initial size %d, requested %d",a->lda,(int)m); 1522284134d9SBarry Smith if (n > a->Nmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number columns of dense matrix larger then its initial size %d, requested %d",a->Nmax,(int)n); 1523899cda47SBarry Smith A->rmap.n = A->rmap.n = m; 1524899cda47SBarry Smith A->cmap.n = A->cmap.N = n; 152521a2c019SBarry Smith if (a->changelda) a->lda = m; 152621a2c019SBarry Smith ierr = PetscMemzero(a->v,m*n*sizeof(PetscScalar));CHKERRQ(ierr); 1527284134d9SBarry Smith PetscFunctionReturn(0); 1528284134d9SBarry Smith } 1529170fe5c8SBarry Smith 1530284134d9SBarry Smith 1531a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 1532a9fe9ddaSSatish Balay #undef __FUNCT__ 1533a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMult_SeqDense_SeqDense" 1534a9fe9ddaSSatish Balay PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1535a9fe9ddaSSatish Balay { 1536a9fe9ddaSSatish Balay PetscErrorCode ierr; 1537a9fe9ddaSSatish Balay 1538a9fe9ddaSSatish Balay PetscFunctionBegin; 1539a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1540a9fe9ddaSSatish Balay ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1541a9fe9ddaSSatish Balay } 1542a9fe9ddaSSatish Balay ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1543a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1544a9fe9ddaSSatish Balay } 1545a9fe9ddaSSatish Balay 1546a9fe9ddaSSatish Balay #undef __FUNCT__ 1547a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultSymbolic_SeqDense_SeqDense" 1548a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1549a9fe9ddaSSatish Balay { 1550ee16a9a1SHong Zhang PetscErrorCode ierr; 1551899cda47SBarry Smith PetscInt m=A->rmap.n,n=B->cmap.n; 1552ee16a9a1SHong Zhang Mat Cmat; 1553a9fe9ddaSSatish Balay 1554ee16a9a1SHong Zhang PetscFunctionBegin; 1555899cda47SBarry Smith if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 1556ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1557ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1558ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1559ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1560ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1561ee16a9a1SHong Zhang *C = Cmat; 1562ee16a9a1SHong Zhang PetscFunctionReturn(0); 1563ee16a9a1SHong Zhang } 1564a9fe9ddaSSatish Balay 156598a3b096SSatish Balay #undef __FUNCT__ 1566a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultNumeric_SeqDense_SeqDense" 1567a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1568a9fe9ddaSSatish Balay { 1569a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1570a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1571a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 15720805154bSBarry Smith PetscBLASInt m,n,k; 1573a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1574a9fe9ddaSSatish Balay 1575a9fe9ddaSSatish Balay PetscFunctionBegin; 15760805154bSBarry Smith m = PetscBLASIntCast(A->rmap.n); 15770805154bSBarry Smith n = PetscBLASIntCast(B->cmap.n); 15780805154bSBarry Smith k = PetscBLASIntCast(A->cmap.n); 1579a9fe9ddaSSatish Balay BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1580a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1581a9fe9ddaSSatish Balay } 1582a9fe9ddaSSatish Balay 1583a9fe9ddaSSatish Balay #undef __FUNCT__ 1584a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTranspose_SeqDense_SeqDense" 1585a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTranspose_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1586a9fe9ddaSSatish Balay { 1587a9fe9ddaSSatish Balay PetscErrorCode ierr; 1588a9fe9ddaSSatish Balay 1589a9fe9ddaSSatish Balay PetscFunctionBegin; 1590a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1591a9fe9ddaSSatish Balay ierr = MatMatMultTransposeSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1592a9fe9ddaSSatish Balay } 1593a9fe9ddaSSatish Balay ierr = MatMatMultTransposeNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1594a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1595a9fe9ddaSSatish Balay } 1596a9fe9ddaSSatish Balay 1597a9fe9ddaSSatish Balay #undef __FUNCT__ 1598a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeSymbolic_SeqDense_SeqDense" 1599a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1600a9fe9ddaSSatish Balay { 1601ee16a9a1SHong Zhang PetscErrorCode ierr; 1602899cda47SBarry Smith PetscInt m=A->cmap.n,n=B->cmap.n; 1603ee16a9a1SHong Zhang Mat Cmat; 1604a9fe9ddaSSatish Balay 1605ee16a9a1SHong Zhang PetscFunctionBegin; 1606899cda47SBarry Smith if (A->rmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->rmap.n %d != B->rmap.n %d\n",A->rmap.n,B->rmap.n); 1607ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1608ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1609ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1610ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1611ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1612ee16a9a1SHong Zhang *C = Cmat; 1613ee16a9a1SHong Zhang PetscFunctionReturn(0); 1614ee16a9a1SHong Zhang } 1615a9fe9ddaSSatish Balay 1616a9fe9ddaSSatish Balay #undef __FUNCT__ 1617a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeNumeric_SeqDense_SeqDense" 1618a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1619a9fe9ddaSSatish Balay { 1620a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1621a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1622a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16230805154bSBarry Smith PetscBLASInt m,n,k; 1624a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1625a9fe9ddaSSatish Balay 1626a9fe9ddaSSatish Balay PetscFunctionBegin; 16272fbe02b9SBarry Smith m = PetscBLASIntCast(A->cmap.n); 16280805154bSBarry Smith n = PetscBLASIntCast(B->cmap.n); 16292fbe02b9SBarry Smith k = PetscBLASIntCast(A->rmap.n); 16302fbe02b9SBarry Smith /* 16312fbe02b9SBarry Smith Note the m and n arguments below are the number rows and columns of A', not A! 16322fbe02b9SBarry Smith */ 1633a9fe9ddaSSatish Balay BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1634a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1635a9fe9ddaSSatish Balay } 1636985db425SBarry Smith 1637985db425SBarry Smith #undef __FUNCT__ 1638985db425SBarry Smith #define __FUNCT__ "MatGetRowMax_SeqDense" 1639985db425SBarry Smith PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 1640985db425SBarry Smith { 1641985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1642985db425SBarry Smith PetscErrorCode ierr; 1643985db425SBarry Smith PetscInt i,j,m = A->rmap.n,n = A->cmap.n,p; 1644985db425SBarry Smith PetscScalar *x; 1645985db425SBarry Smith MatScalar *aa = a->v; 1646985db425SBarry Smith 1647985db425SBarry Smith PetscFunctionBegin; 1648985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1649985db425SBarry Smith 1650985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1651985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1652985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1653985db425SBarry Smith if (p != A->rmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1654985db425SBarry Smith for (i=0; i<m; i++) { 1655985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1656985db425SBarry Smith for (j=1; j<n; j++){ 1657985db425SBarry Smith if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1658985db425SBarry Smith } 1659985db425SBarry Smith } 1660985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1661985db425SBarry Smith PetscFunctionReturn(0); 1662985db425SBarry Smith } 1663985db425SBarry Smith 1664985db425SBarry Smith #undef __FUNCT__ 1665985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqDense" 1666985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 1667985db425SBarry Smith { 1668985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1669985db425SBarry Smith PetscErrorCode ierr; 1670985db425SBarry Smith PetscInt i,j,m = A->rmap.n,n = A->cmap.n,p; 1671985db425SBarry Smith PetscScalar *x; 1672985db425SBarry Smith PetscReal atmp; 1673985db425SBarry Smith MatScalar *aa = a->v; 1674985db425SBarry Smith 1675985db425SBarry Smith PetscFunctionBegin; 1676985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1677985db425SBarry Smith 1678985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1679985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1680985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1681985db425SBarry Smith if (p != A->rmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1682985db425SBarry Smith for (i=0; i<m; i++) { 16839189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 1684985db425SBarry Smith for (j=1; j<n; j++){ 1685985db425SBarry Smith atmp = PetscAbsScalar(aa[i+m*j]); 1686985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 1687985db425SBarry Smith } 1688985db425SBarry Smith } 1689985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1690985db425SBarry Smith PetscFunctionReturn(0); 1691985db425SBarry Smith } 1692985db425SBarry Smith 1693985db425SBarry Smith #undef __FUNCT__ 1694985db425SBarry Smith #define __FUNCT__ "MatGetRowMin_SeqDense" 1695985db425SBarry Smith PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 1696985db425SBarry Smith { 1697985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1698985db425SBarry Smith PetscErrorCode ierr; 1699985db425SBarry Smith PetscInt i,j,m = A->rmap.n,n = A->cmap.n,p; 1700985db425SBarry Smith PetscScalar *x; 1701985db425SBarry Smith MatScalar *aa = a->v; 1702985db425SBarry Smith 1703985db425SBarry Smith PetscFunctionBegin; 1704985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1705985db425SBarry Smith 1706985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1707985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1708985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1709985db425SBarry Smith if (p != A->rmap.n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1710985db425SBarry Smith for (i=0; i<m; i++) { 1711985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1712985db425SBarry Smith for (j=1; j<n; j++){ 1713985db425SBarry Smith if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1714985db425SBarry Smith } 1715985db425SBarry Smith } 1716985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1717985db425SBarry Smith PetscFunctionReturn(0); 1718985db425SBarry Smith } 1719985db425SBarry Smith 17208d0534beSBarry Smith #undef __FUNCT__ 17218d0534beSBarry Smith #define __FUNCT__ "MatGetColumnVector_SeqDense" 17228d0534beSBarry Smith PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 17238d0534beSBarry Smith { 17248d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 17258d0534beSBarry Smith PetscErrorCode ierr; 17268d0534beSBarry Smith PetscScalar *x; 17278d0534beSBarry Smith 17288d0534beSBarry Smith PetscFunctionBegin; 17298d0534beSBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 17308d0534beSBarry Smith 17318d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 17328d0534beSBarry Smith ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap.n*sizeof(PetscScalar));CHKERRQ(ierr); 17338d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 17348d0534beSBarry Smith PetscFunctionReturn(0); 17358d0534beSBarry Smith } 17368d0534beSBarry Smith 1737289bc588SBarry Smith /* -------------------------------------------------------------------*/ 1738a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 1739905e6a2fSBarry Smith MatGetRow_SeqDense, 1740905e6a2fSBarry Smith MatRestoreRow_SeqDense, 1741905e6a2fSBarry Smith MatMult_SeqDense, 174297304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 17437c922b88SBarry Smith MatMultTranspose_SeqDense, 17447c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 1745905e6a2fSBarry Smith MatSolve_SeqDense, 1746905e6a2fSBarry Smith MatSolveAdd_SeqDense, 17477c922b88SBarry Smith MatSolveTranspose_SeqDense, 174897304618SKris Buschelman /*10*/ MatSolveTransposeAdd_SeqDense, 1749905e6a2fSBarry Smith MatLUFactor_SeqDense, 1750905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 1751ec8511deSBarry Smith MatRelax_SeqDense, 1752ec8511deSBarry Smith MatTranspose_SeqDense, 175397304618SKris Buschelman /*15*/ MatGetInfo_SeqDense, 1754905e6a2fSBarry Smith MatEqual_SeqDense, 1755905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 1756905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 1757905e6a2fSBarry Smith MatNorm_SeqDense, 1758c0aa2d19SHong Zhang /*20*/ MatAssemblyBegin_SeqDense, 1759c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 1760905e6a2fSBarry Smith 0, 1761905e6a2fSBarry Smith MatSetOption_SeqDense, 1762905e6a2fSBarry Smith MatZeroEntries_SeqDense, 176397304618SKris Buschelman /*25*/ MatZeroRows_SeqDense, 1764905e6a2fSBarry Smith MatLUFactorSymbolic_SeqDense, 1765905e6a2fSBarry Smith MatLUFactorNumeric_SeqDense, 1766905e6a2fSBarry Smith MatCholeskyFactorSymbolic_SeqDense, 1767905e6a2fSBarry Smith MatCholeskyFactorNumeric_SeqDense, 176897304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqDense, 1769273d9f13SBarry Smith 0, 1770905e6a2fSBarry Smith 0, 1771905e6a2fSBarry Smith MatGetArray_SeqDense, 1772905e6a2fSBarry Smith MatRestoreArray_SeqDense, 177397304618SKris Buschelman /*35*/ MatDuplicate_SeqDense, 1774a5ae1ecdSBarry Smith 0, 1775a5ae1ecdSBarry Smith 0, 1776a5ae1ecdSBarry Smith 0, 1777a5ae1ecdSBarry Smith 0, 177897304618SKris Buschelman /*40*/ MatAXPY_SeqDense, 1779a5ae1ecdSBarry Smith MatGetSubMatrices_SeqDense, 1780a5ae1ecdSBarry Smith 0, 17814b0e389bSBarry Smith MatGetValues_SeqDense, 1782a5ae1ecdSBarry Smith MatCopy_SeqDense, 1783985db425SBarry Smith /*45*/ MatGetRowMax_SeqDense, 1784a5ae1ecdSBarry Smith MatScale_SeqDense, 1785a5ae1ecdSBarry Smith 0, 1786a5ae1ecdSBarry Smith 0, 1787a5ae1ecdSBarry Smith 0, 1788521d7252SBarry Smith /*50*/ 0, 1789a5ae1ecdSBarry Smith 0, 1790a5ae1ecdSBarry Smith 0, 1791a5ae1ecdSBarry Smith 0, 1792a5ae1ecdSBarry Smith 0, 179397304618SKris Buschelman /*55*/ 0, 1794a5ae1ecdSBarry Smith 0, 1795a5ae1ecdSBarry Smith 0, 1796a5ae1ecdSBarry Smith 0, 1797a5ae1ecdSBarry Smith 0, 179897304618SKris Buschelman /*60*/ 0, 1799e03a110bSBarry Smith MatDestroy_SeqDense, 1800e03a110bSBarry Smith MatView_SeqDense, 1801357abbc8SBarry Smith 0, 180297304618SKris Buschelman 0, 180397304618SKris Buschelman /*65*/ 0, 180497304618SKris Buschelman 0, 180597304618SKris Buschelman 0, 180697304618SKris Buschelman 0, 180797304618SKris Buschelman 0, 1808985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqDense, 180997304618SKris Buschelman 0, 181097304618SKris Buschelman 0, 181197304618SKris Buschelman 0, 181297304618SKris Buschelman 0, 181397304618SKris Buschelman /*75*/ 0, 181497304618SKris Buschelman 0, 181597304618SKris Buschelman 0, 181697304618SKris Buschelman 0, 181797304618SKris Buschelman 0, 181897304618SKris Buschelman /*80*/ 0, 181997304618SKris Buschelman 0, 182097304618SKris Buschelman 0, 182197304618SKris Buschelman 0, 1822865e5f61SKris Buschelman /*84*/ MatLoad_SeqDense, 1823865e5f61SKris Buschelman 0, 18241cbb95d3SBarry Smith MatIsHermitian_SeqDense, 1825865e5f61SKris Buschelman 0, 1826865e5f61SKris Buschelman 0, 1827865e5f61SKris Buschelman 0, 1828a9fe9ddaSSatish Balay /*90*/ MatMatMult_SeqDense_SeqDense, 1829a9fe9ddaSSatish Balay MatMatMultSymbolic_SeqDense_SeqDense, 1830a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 1831865e5f61SKris Buschelman 0, 1832865e5f61SKris Buschelman 0, 1833865e5f61SKris Buschelman /*95*/ 0, 1834a9fe9ddaSSatish Balay MatMatMultTranspose_SeqDense_SeqDense, 1835a9fe9ddaSSatish Balay MatMatMultTransposeSymbolic_SeqDense_SeqDense, 1836a9fe9ddaSSatish Balay MatMatMultTransposeNumeric_SeqDense_SeqDense, 1837284134d9SBarry Smith 0, 1838284134d9SBarry Smith /*100*/0, 1839284134d9SBarry Smith 0, 1840284134d9SBarry Smith 0, 1841284134d9SBarry Smith 0, 1842985db425SBarry Smith MatSetSizes_SeqDense, 1843985db425SBarry Smith 0, 1844985db425SBarry Smith 0, 1845985db425SBarry Smith 0, 1846985db425SBarry Smith 0, 1847985db425SBarry Smith 0, 1848985db425SBarry Smith /*110*/0, 1849985db425SBarry Smith 0, 18508d0534beSBarry Smith MatGetRowMin_SeqDense, 18518d0534beSBarry Smith MatGetColumnVector_SeqDense 1852985db425SBarry Smith }; 185390ace30eSBarry Smith 18544a2ae208SSatish Balay #undef __FUNCT__ 18554a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense" 18564b828684SBarry Smith /*@C 1857fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 1858d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 1859d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 1860289bc588SBarry Smith 1861db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1862db81eaa0SLois Curfman McInnes 186320563c6bSBarry Smith Input Parameters: 1864db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 18650c775827SLois Curfman McInnes . m - number of rows 186618f449edSLois Curfman McInnes . n - number of columns 1867db81eaa0SLois Curfman McInnes - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1868dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 186920563c6bSBarry Smith 187020563c6bSBarry Smith Output Parameter: 187144cd7ae7SLois Curfman McInnes . A - the matrix 187220563c6bSBarry Smith 1873b259b22eSLois Curfman McInnes Notes: 187418f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 187518f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1876b4fd4287SBarry Smith set data=PETSC_NULL. 187718f449edSLois Curfman McInnes 1878027ccd11SLois Curfman McInnes Level: intermediate 1879027ccd11SLois Curfman McInnes 1880dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS 1881d65003e9SLois Curfman McInnes 1882db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 188320563c6bSBarry Smith @*/ 1884be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 1885289bc588SBarry Smith { 1886dfbe8321SBarry Smith PetscErrorCode ierr; 18873b2fbd54SBarry Smith 18883a40ed3dSBarry Smith PetscFunctionBegin; 1889f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1890f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 1891273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1892273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1893273d9f13SBarry Smith PetscFunctionReturn(0); 1894273d9f13SBarry Smith } 1895273d9f13SBarry Smith 18964a2ae208SSatish Balay #undef __FUNCT__ 1897afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation" 1898273d9f13SBarry Smith /*@C 1899273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 1900273d9f13SBarry Smith 1901273d9f13SBarry Smith Collective on MPI_Comm 1902273d9f13SBarry Smith 1903273d9f13SBarry Smith Input Parameters: 1904273d9f13SBarry Smith + A - the matrix 1905273d9f13SBarry Smith - data - the array (or PETSC_NULL) 1906273d9f13SBarry Smith 1907273d9f13SBarry Smith Notes: 1908273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1909273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1910284134d9SBarry Smith need not call this routine. 1911273d9f13SBarry Smith 1912273d9f13SBarry Smith Level: intermediate 1913273d9f13SBarry Smith 1914273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS 1915273d9f13SBarry Smith 1916273d9f13SBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 1917273d9f13SBarry Smith @*/ 1918be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 1919273d9f13SBarry Smith { 1920dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar[]); 1921a23d5eceSKris Buschelman 1922a23d5eceSKris Buschelman PetscFunctionBegin; 1923a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1924a23d5eceSKris Buschelman if (f) { 1925a23d5eceSKris Buschelman ierr = (*f)(B,data);CHKERRQ(ierr); 1926a23d5eceSKris Buschelman } 1927a23d5eceSKris Buschelman PetscFunctionReturn(0); 1928a23d5eceSKris Buschelman } 1929a23d5eceSKris Buschelman 1930a23d5eceSKris Buschelman EXTERN_C_BEGIN 1931a23d5eceSKris Buschelman #undef __FUNCT__ 1932afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation_SeqDense" 1933be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 1934a23d5eceSKris Buschelman { 1935273d9f13SBarry Smith Mat_SeqDense *b; 1936dfbe8321SBarry Smith PetscErrorCode ierr; 1937273d9f13SBarry Smith 1938273d9f13SBarry Smith PetscFunctionBegin; 1939273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1940273d9f13SBarry Smith b = (Mat_SeqDense*)B->data; 19415afd5e0cSBarry Smith if (b->lda <= 0) b->lda = B->rmap.n; 19429e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 19439e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 19445afd5e0cSBarry Smith ierr = PetscMalloc(b->lda*b->Nmax*sizeof(PetscScalar),&b->v);CHKERRQ(ierr); 1945284134d9SBarry Smith ierr = PetscMemzero(b->v,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 1946284134d9SBarry Smith ierr = PetscLogObjectMemory(B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 19479e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 1948273d9f13SBarry Smith } else { /* user-allocated storage */ 19499e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 1950273d9f13SBarry Smith b->v = data; 1951273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 1952273d9f13SBarry Smith } 1953273d9f13SBarry Smith PetscFunctionReturn(0); 1954273d9f13SBarry Smith } 1955a23d5eceSKris Buschelman EXTERN_C_END 1956273d9f13SBarry Smith 19571b807ce4Svictorle #undef __FUNCT__ 19581b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA" 19591b807ce4Svictorle /*@C 19601b807ce4Svictorle MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array 19611b807ce4Svictorle 19621b807ce4Svictorle Input parameter: 19631b807ce4Svictorle + A - the matrix 19641b807ce4Svictorle - lda - the leading dimension 19651b807ce4Svictorle 19661b807ce4Svictorle Notes: 19671b807ce4Svictorle This routine is to be used in conjunction with MatSeqDenseSetPreallocation; 19681b807ce4Svictorle it asserts that the preallocation has a leading dimension (the LDA parameter 19691b807ce4Svictorle of Blas and Lapack fame) larger than M, the first dimension of the matrix. 19701b807ce4Svictorle 19711b807ce4Svictorle Level: intermediate 19721b807ce4Svictorle 19731b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS 19741b807ce4Svictorle 1975284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize() 19761b807ce4Svictorle @*/ 1977be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat B,PetscInt lda) 19781b807ce4Svictorle { 19791b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 198021a2c019SBarry Smith 19811b807ce4Svictorle PetscFunctionBegin; 1982899cda47SBarry Smith if (lda < B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap.n); 19831b807ce4Svictorle b->lda = lda; 198421a2c019SBarry Smith b->changelda = PETSC_FALSE; 198521a2c019SBarry Smith b->Mmax = PetscMax(b->Mmax,lda); 19861b807ce4Svictorle PetscFunctionReturn(0); 19871b807ce4Svictorle } 19881b807ce4Svictorle 19890bad9183SKris Buschelman /*MC 1990fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 19910bad9183SKris Buschelman 19920bad9183SKris Buschelman Options Database Keys: 19930bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 19940bad9183SKris Buschelman 19950bad9183SKris Buschelman Level: beginner 19960bad9183SKris Buschelman 199789665df3SBarry Smith .seealso: MatCreateSeqDense() 199889665df3SBarry Smith 19990bad9183SKris Buschelman M*/ 20000bad9183SKris Buschelman 2001273d9f13SBarry Smith EXTERN_C_BEGIN 20024a2ae208SSatish Balay #undef __FUNCT__ 20034a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense" 2004be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqDense(Mat B) 2005273d9f13SBarry Smith { 2006273d9f13SBarry Smith Mat_SeqDense *b; 2007dfbe8321SBarry Smith PetscErrorCode ierr; 20087c334f02SBarry Smith PetscMPIInt size; 2009273d9f13SBarry Smith 2010273d9f13SBarry Smith PetscFunctionBegin; 20117adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 201229bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 201355659b69SBarry Smith 2014899cda47SBarry Smith B->rmap.bs = B->cmap.bs = 1; 20156148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 20166148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 2017273d9f13SBarry Smith 201838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqDense,&b);CHKERRQ(ierr); 2019549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 202090f02eecSBarry Smith B->mapping = 0; 202144cd7ae7SLois Curfman McInnes B->data = (void*)b; 202218f449edSLois Curfman McInnes 2023a5ae1ecdSBarry Smith 202444cd7ae7SLois Curfman McInnes b->pivots = 0; 2025273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2026273d9f13SBarry Smith b->v = 0; 2027899cda47SBarry Smith b->lda = B->rmap.n; 202821a2c019SBarry Smith b->changelda = PETSC_FALSE; 2029899cda47SBarry Smith b->Mmax = B->rmap.n; 2030899cda47SBarry Smith b->Nmax = B->cmap.n; 20314e220ebcSLois Curfman McInnes 2032b24902e0SBarry Smith 2033b24902e0SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqdense_petsc_C", 2034b24902e0SBarry Smith "MatGetFactor_seqdense_petsc", 2035b24902e0SBarry Smith MatGetFactor_seqdense_petsc);CHKERRQ(ierr); 2036a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C", 2037a23d5eceSKris Buschelman "MatSeqDenseSetPreallocation_SeqDense", 2038a23d5eceSKris Buschelman MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 20394ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMult_seqaij_seqdense_C", 20404ae313f4SHong Zhang "MatMatMult_SeqAIJ_SeqDense", 20414ae313f4SHong Zhang MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 20424ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C", 20434ae313f4SHong Zhang "MatMatMultSymbolic_SeqAIJ_SeqDense", 20444ae313f4SHong Zhang MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 20454ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C", 20464ae313f4SHong Zhang "MatMatMultNumeric_SeqAIJ_SeqDense", 20474ae313f4SHong Zhang MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 204817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 20493a40ed3dSBarry Smith PetscFunctionReturn(0); 2050289bc588SBarry Smith } 2051c0aa2d19SHong Zhang 2052c0aa2d19SHong Zhang 2053273d9f13SBarry Smith EXTERN_C_END 2054