xref: /petsc/src/mat/impls/dense/seq/dense.c (revision ad16ce7a71610727ce6f7208f881cce3c308c3ed)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
16ca15aa20SStefano Zampini   PetscErrorCode ierr;
178c178816SStefano Zampini 
188c178816SStefano Zampini   PetscFunctionBegin;
198c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
20ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
218c178816SStefano Zampini   if (!hermitian) {
228c178816SStefano Zampini     for (k=0;k<n;k++) {
238c178816SStefano Zampini       for (j=k;j<n;j++) {
24ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
258c178816SStefano Zampini       }
268c178816SStefano Zampini     }
278c178816SStefano Zampini   } else {
288c178816SStefano Zampini     for (k=0;k<n;k++) {
298c178816SStefano Zampini       for (j=k;j<n;j++) {
30ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
318c178816SStefano Zampini       }
328c178816SStefano Zampini     }
338c178816SStefano Zampini   }
34ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
358c178816SStefano Zampini   PetscFunctionReturn(0);
368c178816SStefano Zampini }
378c178816SStefano Zampini 
3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
398c178816SStefano Zampini {
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
5400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
558c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
5600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
57ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
588c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
598c178816SStefano Zampini     if (A->spd) {
6000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
618c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
6200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
638c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
658c178816SStefano Zampini     } else if (A->hermitian) {
668c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
678c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
6800121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
698c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7000121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
728c178816SStefano Zampini #endif
738c178816SStefano Zampini     } else { /* symmetric case */
748c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
758c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
7600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
778c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
798c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
808c178816SStefano Zampini     }
818c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
82ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
838c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
848c178816SStefano Zampini 
858c178816SStefano Zampini   A->ops->solve             = NULL;
868c178816SStefano Zampini   A->ops->matsolve          = NULL;
878c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
888c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
898c178816SStefano Zampini   A->ops->solveadd          = NULL;
908c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
918c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
928c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
938c178816SStefano Zampini   PetscFunctionReturn(0);
948c178816SStefano Zampini }
958c178816SStefano Zampini 
963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
973f49a652SStefano Zampini {
983f49a652SStefano Zampini   PetscErrorCode    ierr;
993f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1003f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
101ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
1023f49a652SStefano Zampini   const PetscScalar *xx;
1033f49a652SStefano Zampini 
1043f49a652SStefano Zampini   PetscFunctionBegin;
10576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1063f49a652SStefano Zampini     for (i=0; i<N; i++) {
1073f49a652SStefano Zampini       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1083f49a652SStefano Zampini       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1093f49a652SStefano Zampini       if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1103f49a652SStefano Zampini     }
11176bd3646SJed Brown   }
112ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1133f49a652SStefano Zampini 
1143f49a652SStefano Zampini   /* fix right hand side if needed */
1153f49a652SStefano Zampini   if (x && b) {
1166c4d906cSStefano Zampini     Vec xt;
1176c4d906cSStefano Zampini 
1186c4d906cSStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1196c4d906cSStefano Zampini     ierr = VecDuplicate(x,&xt);CHKERRQ(ierr);
1206c4d906cSStefano Zampini     ierr = VecCopy(x,xt);CHKERRQ(ierr);
1216c4d906cSStefano Zampini     ierr = VecScale(xt,-1.0);CHKERRQ(ierr);
1226c4d906cSStefano Zampini     ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr);
1236c4d906cSStefano Zampini     ierr = VecDestroy(&xt);CHKERRQ(ierr);
1243f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1253f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1263f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1273f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1283f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini 
131ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1323f49a652SStefano Zampini   for (i=0; i<N; i++) {
133ca15aa20SStefano Zampini     slot = v + rows[i]*m;
134580bdb30SBarry Smith     ierr = PetscArrayzero(slot,r);CHKERRQ(ierr);
1353f49a652SStefano Zampini   }
1363f49a652SStefano Zampini   for (i=0; i<N; i++) {
137ca15aa20SStefano Zampini     slot = v + rows[i];
1383f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1393f49a652SStefano Zampini   }
1403f49a652SStefano Zampini   if (diag != 0.0) {
1413f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1423f49a652SStefano Zampini     for (i=0; i<N; i++) {
143ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1443f49a652SStefano Zampini       *slot = diag;
1453f49a652SStefano Zampini     }
1463f49a652SStefano Zampini   }
147ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
1483f49a652SStefano Zampini   PetscFunctionReturn(0);
1493f49a652SStefano Zampini }
1503f49a652SStefano Zampini 
151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
152abc3b08eSStefano Zampini {
153abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
154abc3b08eSStefano Zampini   PetscErrorCode ierr;
155abc3b08eSStefano Zampini 
156abc3b08eSStefano Zampini   PetscFunctionBegin;
157ca15aa20SStefano Zampini   if (c->ptapwork) {
158ca15aa20SStefano Zampini     ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr);
159ca15aa20SStefano Zampini     ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr);
1604222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
161abc3b08eSStefano Zampini   PetscFunctionReturn(0);
162abc3b08eSStefano Zampini }
163abc3b08eSStefano Zampini 
1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
165abc3b08eSStefano Zampini {
166abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1677a3c3d58SStefano Zampini   PetscBool      cisdense;
168abc3b08eSStefano Zampini   PetscErrorCode ierr;
169abc3b08eSStefano Zampini 
170abc3b08eSStefano Zampini   PetscFunctionBegin;
1714222ddf1SHong Zhang   ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr);
1727a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
1737a3c3d58SStefano Zampini   if (!cisdense) {
1747a3c3d58SStefano Zampini     PetscBool flg;
1757a3c3d58SStefano Zampini 
1767a3c3d58SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
1774222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
1787a3c3d58SStefano Zampini   }
1797a3c3d58SStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
1804222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
181ca15aa20SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr);
182ca15aa20SStefano Zampini   ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr);
1837a3c3d58SStefano Zampini   ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr);
1847a3c3d58SStefano Zampini   ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr);
185abc3b08eSStefano Zampini   PetscFunctionReturn(0);
186abc3b08eSStefano Zampini }
187abc3b08eSStefano Zampini 
188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
189b49cda9fSStefano Zampini {
190a13144ffSStefano Zampini   Mat            B = NULL;
191b49cda9fSStefano Zampini   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
192b49cda9fSStefano Zampini   Mat_SeqDense   *b;
193b49cda9fSStefano Zampini   PetscErrorCode ierr;
194b49cda9fSStefano Zampini   PetscInt       *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
195b49cda9fSStefano Zampini   MatScalar      *av=a->a;
196a13144ffSStefano Zampini   PetscBool      isseqdense;
197b49cda9fSStefano Zampini 
198b49cda9fSStefano Zampini   PetscFunctionBegin;
199a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
200a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
201a32993e3SJed Brown     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
202a13144ffSStefano Zampini   }
203a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
204b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
205b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
206b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
207b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
208b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
209a13144ffSStefano Zampini   } else {
210a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
211580bdb30SBarry Smith     ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr);
212a13144ffSStefano Zampini   }
213b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
214b49cda9fSStefano Zampini     PetscInt j;
215b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
216b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
217b49cda9fSStefano Zampini       aj++;
218b49cda9fSStefano Zampini       av++;
219b49cda9fSStefano Zampini     }
220b49cda9fSStefano Zampini     ai++;
221b49cda9fSStefano Zampini   }
222b49cda9fSStefano Zampini 
223511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
224a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
225a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
227b49cda9fSStefano Zampini   } else {
228a13144ffSStefano Zampini     if (B) *newmat = B;
229a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
230a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231b49cda9fSStefano Zampini   }
232b49cda9fSStefano Zampini   PetscFunctionReturn(0);
233b49cda9fSStefano Zampini }
234b49cda9fSStefano Zampini 
235cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2366a63e612SBarry Smith {
2376a63e612SBarry Smith   Mat            B;
2386a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2396a63e612SBarry Smith   PetscErrorCode ierr;
2409399e1b8SMatthew G. Knepley   PetscInt       i, j;
2419399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2429399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2436a63e612SBarry Smith 
2446a63e612SBarry Smith   PetscFunctionBegin;
245ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2466a63e612SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2476a63e612SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2489399e1b8SMatthew G. Knepley   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2499399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2509399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) ++nnz[i];
2516a63e612SBarry Smith     aa += a->lda;
2526a63e612SBarry Smith   }
2539399e1b8SMatthew G. Knepley   ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2549399e1b8SMatthew G. Knepley   aa = a->v;
2559399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2569399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2579399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) {rows[numRows] = i; vals[numRows++] = aa[i];}
2589399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2599399e1b8SMatthew G. Knepley     aa  += a->lda;
2609399e1b8SMatthew G. Knepley   }
2619399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2626a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2636a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2646a63e612SBarry Smith 
265511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
26628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2676a63e612SBarry Smith   } else {
2686a63e612SBarry Smith     *newmat = B;
2696a63e612SBarry Smith   }
2706a63e612SBarry Smith   PetscFunctionReturn(0);
2716a63e612SBarry Smith }
2726a63e612SBarry Smith 
273ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2741987afe7SBarry Smith {
2751987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
276ca15aa20SStefano Zampini   const PetscScalar *xv;
277ca15aa20SStefano Zampini   PetscScalar       *yv;
2780805154bSBarry Smith   PetscBLASInt      N,m,ldax,lday,one = 1;
279efee365bSSatish Balay   PetscErrorCode    ierr;
2803a40ed3dSBarry Smith 
2813a40ed3dSBarry Smith   PetscFunctionBegin;
282ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr);
283ca15aa20SStefano Zampini   ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr);
284c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
285c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
286c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
287c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
288a5ce6ee0Svictorle   if (ldax>m || lday>m) {
289ca15aa20SStefano Zampini     PetscInt j;
290ca15aa20SStefano Zampini 
291d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
292ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
293a5ce6ee0Svictorle     }
294a5ce6ee0Svictorle   } else {
295ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
296a5ce6ee0Svictorle   }
297ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr);
298ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr);
2990450473dSBarry Smith   ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr);
3003a40ed3dSBarry Smith   PetscFunctionReturn(0);
3011987afe7SBarry Smith }
3021987afe7SBarry Smith 
303e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
304289bc588SBarry Smith {
305ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3063a40ed3dSBarry Smith 
3073a40ed3dSBarry Smith   PetscFunctionBegin;
3084e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
309ca15aa20SStefano Zampini   info->nz_allocated      = N;
310ca15aa20SStefano Zampini   info->nz_used           = N;
311ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
312ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3134e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3147adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3154e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3164e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3174e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
319289bc588SBarry Smith }
320289bc588SBarry Smith 
321637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
32280cd9d93SLois Curfman McInnes {
323273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
324ca15aa20SStefano Zampini   PetscScalar    *v;
325efee365bSSatish Balay   PetscErrorCode ierr;
326c5df96a5SBarry Smith   PetscBLASInt   one = 1,j,nz,lda;
32780cd9d93SLois Curfman McInnes 
3283a40ed3dSBarry Smith   PetscFunctionBegin;
329ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
330c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
331d0f46423SBarry Smith   if (lda>A->rmap->n) {
332c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
333d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
334ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
335a5ce6ee0Svictorle     }
336a5ce6ee0Svictorle   } else {
337c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
338ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
339a5ce6ee0Svictorle   }
340efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
341ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
3423a40ed3dSBarry Smith   PetscFunctionReturn(0);
34380cd9d93SLois Curfman McInnes }
34480cd9d93SLois Curfman McInnes 
345e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3461cbb95d3SBarry Smith {
3471cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
348ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
349ca15aa20SStefano Zampini   const PetscScalar *v;
350ca15aa20SStefano Zampini   PetscErrorCode    ierr;
3511cbb95d3SBarry Smith 
3521cbb95d3SBarry Smith   PetscFunctionBegin;
3531cbb95d3SBarry Smith   *fl = PETSC_FALSE;
354d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
355ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
3561cbb95d3SBarry Smith   for (i=0; i<m; i++) {
357ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
358637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
359637a0070SStefano Zampini         goto restore;
3601cbb95d3SBarry Smith       }
3611cbb95d3SBarry Smith     }
362637a0070SStefano Zampini   }
3631cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
364637a0070SStefano Zampini restore:
365637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
366637a0070SStefano Zampini   PetscFunctionReturn(0);
367637a0070SStefano Zampini }
368637a0070SStefano Zampini 
369637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
370637a0070SStefano Zampini {
371637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
372637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
373637a0070SStefano Zampini   const PetscScalar *v;
374637a0070SStefano Zampini   PetscErrorCode    ierr;
375637a0070SStefano Zampini 
376637a0070SStefano Zampini   PetscFunctionBegin;
377637a0070SStefano Zampini   *fl = PETSC_FALSE;
378637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
379637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
380637a0070SStefano Zampini   for (i=0; i<m; i++) {
381637a0070SStefano Zampini     for (j=i; j<m; j++) {
382637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
383637a0070SStefano Zampini         goto restore;
384637a0070SStefano Zampini       }
385637a0070SStefano Zampini     }
386637a0070SStefano Zampini   }
387637a0070SStefano Zampini   *fl  = PETSC_TRUE;
388637a0070SStefano Zampini restore:
389637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
3901cbb95d3SBarry Smith   PetscFunctionReturn(0);
3911cbb95d3SBarry Smith }
3921cbb95d3SBarry Smith 
393ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
394b24902e0SBarry Smith {
395ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
396b24902e0SBarry Smith   PetscErrorCode ierr;
39723fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
398b24902e0SBarry Smith 
399b24902e0SBarry Smith   PetscFunctionBegin;
400aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
401aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
40223fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
40323fc5dcaSStefano Zampini     ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr);
40423fc5dcaSStefano Zampini   }
4050298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
406b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
407ca15aa20SStefano Zampini     const PetscScalar *av;
408ca15aa20SStefano Zampini     PetscScalar       *v;
409ca15aa20SStefano Zampini 
410ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
411ca15aa20SStefano Zampini     ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr);
41223fc5dcaSStefano Zampini     ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr);
413d0f46423SBarry Smith     m    = A->rmap->n;
41423fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
415d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
41623fc5dcaSStefano Zampini         ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr);
417b24902e0SBarry Smith       }
418b24902e0SBarry Smith     } else {
419ca15aa20SStefano Zampini       ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
420b24902e0SBarry Smith     }
421ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr);
422ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
423b24902e0SBarry Smith   }
424b24902e0SBarry Smith   PetscFunctionReturn(0);
425b24902e0SBarry Smith }
426b24902e0SBarry Smith 
427ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
42802cad45dSBarry Smith {
4296849ba73SBarry Smith   PetscErrorCode ierr;
43002cad45dSBarry Smith 
4313a40ed3dSBarry Smith   PetscFunctionBegin;
432ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
433d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
4345c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
435719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
436b24902e0SBarry Smith   PetscFunctionReturn(0);
437b24902e0SBarry Smith }
438b24902e0SBarry Smith 
439e0877f53SBarry Smith static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
440289bc588SBarry Smith {
4414482741eSBarry Smith   MatFactorInfo  info;
442a093e273SMatthew Knepley   PetscErrorCode ierr;
4433a40ed3dSBarry Smith 
4443a40ed3dSBarry Smith   PetscFunctionBegin;
445c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
446ca15aa20SStefano Zampini   ierr = (*fact->ops->lufactor)(fact,0,0,&info);CHKERRQ(ierr);
4473a40ed3dSBarry Smith   PetscFunctionReturn(0);
448289bc588SBarry Smith }
4496ee01492SSatish Balay 
450e0877f53SBarry Smith static PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy)
451289bc588SBarry Smith {
452c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
4536849ba73SBarry Smith   PetscErrorCode    ierr;
454f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
455f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
456c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
45767e560aaSBarry Smith 
4583a40ed3dSBarry Smith   PetscFunctionBegin;
459c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
460f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
4611ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
462580bdb30SBarry Smith   ierr = PetscArraycpy(y,x,A->rmap->n);CHKERRQ(ierr);
463d5f3da31SBarry Smith   if (A->factortype == MAT_FACTOR_LU) {
46400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4658b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
46600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
467e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
468d5f3da31SBarry Smith   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
469a49dc2a2SStefano Zampini     if (A->spd) {
47000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4718b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
47200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
473e32f2f54SBarry Smith       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
474a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
475a49dc2a2SStefano Zampini     } else if (A->hermitian) {
47600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
477a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
47800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
479a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
480a49dc2a2SStefano Zampini #endif
481a49dc2a2SStefano Zampini     } else { /* symmetric case */
48200121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
483a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
48400121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
485a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
486a49dc2a2SStefano Zampini     }
4872205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
488f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
4891ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
490dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
4913a40ed3dSBarry Smith   PetscFunctionReturn(0);
492289bc588SBarry Smith }
4936ee01492SSatish Balay 
494e0877f53SBarry Smith static PetscErrorCode MatMatSolve_SeqDense(Mat A,Mat B,Mat X)
49585e2c93fSHong Zhang {
49685e2c93fSHong Zhang   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
49785e2c93fSHong Zhang   PetscErrorCode    ierr;
4981683a169SBarry Smith   const PetscScalar *b;
4991683a169SBarry Smith   PetscScalar       *x;
500efb80c78SLisandro Dalcin   PetscInt          n;
501783b601eSJed Brown   PetscBLASInt      nrhs,info,m;
50285e2c93fSHong Zhang 
50385e2c93fSHong Zhang   PetscFunctionBegin;
504c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
5050298fd71SBarry Smith   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
506c5df96a5SBarry Smith   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
5071683a169SBarry Smith   ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
5088c778c55SBarry Smith   ierr = MatDenseGetArray(X,&x);CHKERRQ(ierr);
50985e2c93fSHong Zhang 
510580bdb30SBarry Smith   ierr = PetscArraycpy(x,b,m*nrhs);CHKERRQ(ierr);
51185e2c93fSHong Zhang 
51285e2c93fSHong Zhang   if (A->factortype == MAT_FACTOR_LU) {
51300121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5148b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
51500121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
51685e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
51785e2c93fSHong Zhang   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
518a49dc2a2SStefano Zampini     if (A->spd) {
51900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5208b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
52100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
52285e2c93fSHong Zhang       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
523a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
524a49dc2a2SStefano Zampini     } else if (A->hermitian) {
52500121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
526a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
52700121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
528a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
529a49dc2a2SStefano Zampini #endif
530a49dc2a2SStefano Zampini     } else { /* symmetric case */
53100121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
532a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
53300121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
534a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
535a49dc2a2SStefano Zampini     }
5362205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
53785e2c93fSHong Zhang 
5381683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
5398c778c55SBarry Smith   ierr = MatDenseRestoreArray(X,&x);CHKERRQ(ierr);
54085e2c93fSHong Zhang   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
54185e2c93fSHong Zhang   PetscFunctionReturn(0);
54285e2c93fSHong Zhang }
54385e2c93fSHong Zhang 
54400121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat);
54500121966SStefano Zampini 
546e0877f53SBarry Smith static PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy)
547da3a660dSBarry Smith {
548c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
549dfbe8321SBarry Smith   PetscErrorCode    ierr;
550f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
551f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
552c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
55367e560aaSBarry Smith 
5543a40ed3dSBarry Smith   PetscFunctionBegin;
555c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
556f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5571ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
558580bdb30SBarry Smith   ierr = PetscArraycpy(y,x,A->rmap->n);CHKERRQ(ierr);
5598208b9aeSStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
56000121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5618b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
56200121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
563e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS - Bad solve");
5648208b9aeSStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
565a49dc2a2SStefano Zampini     if (A->spd) {
56600121966SStefano Zampini #if defined(PETSC_USE_COMPLEX)
56700121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
56800121966SStefano Zampini #endif
56900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5708b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
57100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
57200121966SStefano Zampini #if defined(PETSC_USE_COMPLEX)
57300121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
57400121966SStefano Zampini #endif
575a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
576a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
577a49dc2a2SStefano Zampini     } else if (A->hermitian) {
57800121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
57900121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
58000121966SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
58100121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
58200121966SStefano Zampini       ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);
583ae7cfcebSSatish Balay #endif
584a49dc2a2SStefano Zampini     } else { /* symmetric case */
58500121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
586a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
58700121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
588a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
589da3a660dSBarry Smith     }
590a49dc2a2SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
591f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5921ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
593dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
5943a40ed3dSBarry Smith   PetscFunctionReturn(0);
595da3a660dSBarry Smith }
5966ee01492SSatish Balay 
597db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
598db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
599db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
600ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
601db4efbfdSBarry Smith {
602db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
603db4efbfdSBarry Smith   PetscErrorCode ierr;
604db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
605db4efbfdSBarry Smith 
606db4efbfdSBarry Smith   PetscFunctionBegin;
607c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
608c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
609db4efbfdSBarry Smith   if (!mat->pivots) {
6108208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
6113bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
612db4efbfdSBarry Smith   }
613db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
6148e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
6158b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
6168e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
6178e57ea43SSatish Balay 
618e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
619e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
6208208b9aeSStefano Zampini 
621db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6228208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
623db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
624d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
625db4efbfdSBarry Smith 
626f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
627f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
628f6224b95SHong Zhang 
629dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
630db4efbfdSBarry Smith   PetscFunctionReturn(0);
631db4efbfdSBarry Smith }
632db4efbfdSBarry Smith 
633a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
634ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
635db4efbfdSBarry Smith {
636db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
637db4efbfdSBarry Smith   PetscErrorCode ierr;
638c5df96a5SBarry Smith   PetscBLASInt   info,n;
639db4efbfdSBarry Smith 
640db4efbfdSBarry Smith   PetscFunctionBegin;
641c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
642db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
643a49dc2a2SStefano Zampini   if (A->spd) {
64400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
6458b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
64600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
647a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
648a49dc2a2SStefano Zampini   } else if (A->hermitian) {
649a49dc2a2SStefano Zampini     if (!mat->pivots) {
650a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
651a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
652a49dc2a2SStefano Zampini     }
653a49dc2a2SStefano Zampini     if (!mat->fwork) {
654a49dc2a2SStefano Zampini       PetscScalar dummy;
655a49dc2a2SStefano Zampini 
656a49dc2a2SStefano Zampini       mat->lfwork = -1;
65700121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
658a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
65900121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
660a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
661a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
662a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
663a49dc2a2SStefano Zampini     }
66400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
665a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
66600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
667a49dc2a2SStefano Zampini #endif
668a49dc2a2SStefano Zampini   } else { /* symmetric case */
669a49dc2a2SStefano Zampini     if (!mat->pivots) {
670a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
671a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
672a49dc2a2SStefano Zampini     }
673a49dc2a2SStefano Zampini     if (!mat->fwork) {
674a49dc2a2SStefano Zampini       PetscScalar dummy;
675a49dc2a2SStefano Zampini 
676a49dc2a2SStefano Zampini       mat->lfwork = -1;
67700121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
678a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
67900121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
680a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
681a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
682a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
683a49dc2a2SStefano Zampini     }
68400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
685a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
68600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
687a49dc2a2SStefano Zampini   }
688e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
6898208b9aeSStefano Zampini 
690db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6918208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
692db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
693d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
6942205254eSKarl Rupp 
695f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
696f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
697f6224b95SHong Zhang 
698eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
699db4efbfdSBarry Smith   PetscFunctionReturn(0);
700db4efbfdSBarry Smith }
701db4efbfdSBarry Smith 
7020481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
703db4efbfdSBarry Smith {
704db4efbfdSBarry Smith   PetscErrorCode ierr;
705db4efbfdSBarry Smith   MatFactorInfo  info;
706db4efbfdSBarry Smith 
707db4efbfdSBarry Smith   PetscFunctionBegin;
708db4efbfdSBarry Smith   info.fill = 1.0;
7092205254eSKarl Rupp 
710c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
711ca15aa20SStefano Zampini   ierr = (*fact->ops->choleskyfactor)(fact,0,&info);CHKERRQ(ierr);
712db4efbfdSBarry Smith   PetscFunctionReturn(0);
713db4efbfdSBarry Smith }
714db4efbfdSBarry Smith 
715ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
716db4efbfdSBarry Smith {
717db4efbfdSBarry Smith   PetscFunctionBegin;
718c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
7191bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
720719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
721bd443b22SStefano Zampini   fact->ops->solve                 = MatSolve_SeqDense;
722bd443b22SStefano Zampini   fact->ops->matsolve              = MatMatSolve_SeqDense;
723bd443b22SStefano Zampini   fact->ops->solvetranspose        = MatSolveTranspose_SeqDense;
724db4efbfdSBarry Smith   PetscFunctionReturn(0);
725db4efbfdSBarry Smith }
726db4efbfdSBarry Smith 
727ca15aa20SStefano Zampini PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
728db4efbfdSBarry Smith {
729db4efbfdSBarry Smith   PetscFunctionBegin;
730b66fe19dSMatthew G Knepley   fact->preallocated           = PETSC_TRUE;
731c3ef05f6SHong Zhang   fact->assembled              = PETSC_TRUE;
732719d5645SBarry Smith   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
733bd443b22SStefano Zampini   fact->ops->solve             = MatSolve_SeqDense;
734bd443b22SStefano Zampini   fact->ops->matsolve          = MatMatSolve_SeqDense;
735bd443b22SStefano Zampini   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense;
736db4efbfdSBarry Smith   PetscFunctionReturn(0);
737db4efbfdSBarry Smith }
738db4efbfdSBarry Smith 
739ca15aa20SStefano Zampini /* uses LAPACK */
740cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
741db4efbfdSBarry Smith {
742db4efbfdSBarry Smith   PetscErrorCode ierr;
743db4efbfdSBarry Smith 
744db4efbfdSBarry Smith   PetscFunctionBegin;
745ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
746db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
747ca15aa20SStefano Zampini   ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr);
748db4efbfdSBarry Smith   if (ftype == MAT_FACTOR_LU) {
749db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
750db4efbfdSBarry Smith   } else {
751db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
752db4efbfdSBarry Smith   }
753d5f3da31SBarry Smith   (*fact)->factortype = ftype;
75400c67f3bSHong Zhang 
75500c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
75600c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
757db4efbfdSBarry Smith   PetscFunctionReturn(0);
758db4efbfdSBarry Smith }
759db4efbfdSBarry Smith 
760289bc588SBarry Smith /* ------------------------------------------------------------------*/
761e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
762289bc588SBarry Smith {
763c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
764d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
765d9ca1df4SBarry Smith   const PetscScalar *b;
766dfbe8321SBarry Smith   PetscErrorCode    ierr;
767d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
768c5df96a5SBarry Smith   PetscBLASInt      o = 1,bm;
769289bc588SBarry Smith 
7703a40ed3dSBarry Smith   PetscFunctionBegin;
771ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
772c70f7ee4SJunchao Zhang   if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
773ca15aa20SStefano Zampini #endif
774422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
775c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
776289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
7773bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
7782dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
779289bc588SBarry Smith   }
7801ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
781d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
782b965ef7fSBarry Smith   its  = its*lits;
783e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
784289bc588SBarry Smith   while (its--) {
785fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
786289bc588SBarry Smith       for (i=0; i<m; i++) {
7873bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
78855a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
789289bc588SBarry Smith       }
790289bc588SBarry Smith     }
791fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
792289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
7933bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
79455a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
795289bc588SBarry Smith       }
796289bc588SBarry Smith     }
797289bc588SBarry Smith   }
798d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
7991ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8003a40ed3dSBarry Smith   PetscFunctionReturn(0);
801289bc588SBarry Smith }
802289bc588SBarry Smith 
803289bc588SBarry Smith /* -----------------------------------------------------------------*/
804ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
805289bc588SBarry Smith {
806c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
807d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
808d9ca1df4SBarry Smith   PetscScalar       *y;
809dfbe8321SBarry Smith   PetscErrorCode    ierr;
8100805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
811ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
8123a40ed3dSBarry Smith 
8133a40ed3dSBarry Smith   PetscFunctionBegin;
814c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
815c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
816d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8172bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
8185ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
8195ac36cfcSBarry Smith     PetscBLASInt i;
8205ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
8215ac36cfcSBarry Smith   } else {
8228b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
8235ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
8245ac36cfcSBarry Smith   }
825d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8262bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
828289bc588SBarry Smith }
829800995b7SMatthew Knepley 
830ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
831289bc588SBarry Smith {
832c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
833d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
834dfbe8321SBarry Smith   PetscErrorCode    ierr;
8350805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
836d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
839c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
840c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
841d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8422bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
8435ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
8445ac36cfcSBarry Smith     PetscBLASInt i;
8455ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
8465ac36cfcSBarry Smith   } else {
8478b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
8485ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
8495ac36cfcSBarry Smith   }
850d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8512bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
8523a40ed3dSBarry Smith   PetscFunctionReturn(0);
853289bc588SBarry Smith }
8546ee01492SSatish Balay 
855ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
856289bc588SBarry Smith {
857c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
858d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
859d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
860dfbe8321SBarry Smith   PetscErrorCode    ierr;
8610805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
8623a40ed3dSBarry Smith 
8633a40ed3dSBarry Smith   PetscFunctionBegin;
864c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
865c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
866d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
867600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
868d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8691ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8708b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
871d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8721ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
873dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8743a40ed3dSBarry Smith   PetscFunctionReturn(0);
875289bc588SBarry Smith }
8766ee01492SSatish Balay 
877ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
878289bc588SBarry Smith {
879c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
880d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
881d9ca1df4SBarry Smith   PetscScalar       *y;
882dfbe8321SBarry Smith   PetscErrorCode    ierr;
8830805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
88487828ca2SBarry Smith   PetscScalar       _DOne=1.0;
8853a40ed3dSBarry Smith 
8863a40ed3dSBarry Smith   PetscFunctionBegin;
887c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
888c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
889d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
890600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
891d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8921ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8938b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
894d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8951ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
896dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8973a40ed3dSBarry Smith   PetscFunctionReturn(0);
898289bc588SBarry Smith }
899289bc588SBarry Smith 
900289bc588SBarry Smith /* -----------------------------------------------------------------*/
901e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
902289bc588SBarry Smith {
903c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9046849ba73SBarry Smith   PetscErrorCode ierr;
90513f74950SBarry Smith   PetscInt       i;
90667e560aaSBarry Smith 
9073a40ed3dSBarry Smith   PetscFunctionBegin;
908d0f46423SBarry Smith   *ncols = A->cmap->n;
909289bc588SBarry Smith   if (cols) {
910854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr);
911d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
912289bc588SBarry Smith   }
913289bc588SBarry Smith   if (vals) {
914ca15aa20SStefano Zampini     const PetscScalar *v;
915ca15aa20SStefano Zampini 
916ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
917854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr);
918ca15aa20SStefano Zampini     v   += row;
919d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
920ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
921289bc588SBarry Smith   }
9223a40ed3dSBarry Smith   PetscFunctionReturn(0);
923289bc588SBarry Smith }
9246ee01492SSatish Balay 
925e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
926289bc588SBarry Smith {
927dfbe8321SBarry Smith   PetscErrorCode ierr;
9286e111a19SKarl Rupp 
929606d414cSSatish Balay   PetscFunctionBegin;
930606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
931606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
9323a40ed3dSBarry Smith   PetscFunctionReturn(0);
933289bc588SBarry Smith }
934289bc588SBarry Smith /* ----------------------------------------------------------------*/
935e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
936289bc588SBarry Smith {
937c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
938ca15aa20SStefano Zampini   PetscScalar      *av;
93913f74950SBarry Smith   PetscInt         i,j,idx=0;
940ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
941c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
942ca15aa20SStefano Zampini #endif
943ca15aa20SStefano Zampini   PetscErrorCode   ierr;
944d6dfbf8fSBarry Smith 
9453a40ed3dSBarry Smith   PetscFunctionBegin;
946ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr);
947289bc588SBarry Smith   if (!mat->roworiented) {
948dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
949289bc588SBarry Smith       for (j=0; j<n; j++) {
950cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
951cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
952289bc588SBarry Smith         for (i=0; i<m; i++) {
953cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
954cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
955ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
956289bc588SBarry Smith         }
957289bc588SBarry Smith       }
9583a40ed3dSBarry Smith     } else {
959289bc588SBarry Smith       for (j=0; j<n; j++) {
960cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
961cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
962289bc588SBarry Smith         for (i=0; i<m; i++) {
963cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
964cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
965ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
966289bc588SBarry Smith         }
967289bc588SBarry Smith       }
968289bc588SBarry Smith     }
9693a40ed3dSBarry Smith   } else {
970dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
971e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
972cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
973cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
974e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
975cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
976cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
977ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
978e8d4e0b9SBarry Smith         }
979e8d4e0b9SBarry Smith       }
9803a40ed3dSBarry Smith     } else {
981289bc588SBarry Smith       for (i=0; i<m; i++) {
982cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
983cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
984289bc588SBarry Smith         for (j=0; j<n; j++) {
985cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
986cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
987ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
988289bc588SBarry Smith         }
989289bc588SBarry Smith       }
990289bc588SBarry Smith     }
991e8d4e0b9SBarry Smith   }
992ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
993ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
994c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
995c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
996ca15aa20SStefano Zampini #endif
997ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr);
998ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
999c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1000ca15aa20SStefano Zampini #endif
10013a40ed3dSBarry Smith   PetscFunctionReturn(0);
1002289bc588SBarry Smith }
1003e8d4e0b9SBarry Smith 
1004e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1005ae80bb75SLois Curfman McInnes {
1006ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1007ca15aa20SStefano Zampini   const PetscScalar *vv;
100813f74950SBarry Smith   PetscInt          i,j;
1009ca15aa20SStefano Zampini   PetscErrorCode    ierr;
1010ae80bb75SLois Curfman McInnes 
10113a40ed3dSBarry Smith   PetscFunctionBegin;
1012ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1013ae80bb75SLois Curfman McInnes   /* row-oriented output */
1014ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
101597e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1016e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1017ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
10186f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1019e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
1020ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1021ae80bb75SLois Curfman McInnes     }
1022ae80bb75SLois Curfman McInnes   }
1023ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
10243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1025ae80bb75SLois Curfman McInnes }
1026ae80bb75SLois Curfman McInnes 
1027289bc588SBarry Smith /* -----------------------------------------------------------------*/
1028289bc588SBarry Smith 
10298491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1030aabbc4fbSShri Abhyankar {
1031aabbc4fbSShri Abhyankar   PetscErrorCode    ierr;
10328491ab44SLisandro Dalcin   PetscBool         skipHeader;
10338491ab44SLisandro Dalcin   PetscViewerFormat format;
10348491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
10358491ab44SLisandro Dalcin   const PetscScalar *v;
10368491ab44SLisandro Dalcin   PetscScalar       *vwork;
1037aabbc4fbSShri Abhyankar 
1038aabbc4fbSShri Abhyankar   PetscFunctionBegin;
10398491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10408491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
10418491ab44SLisandro Dalcin   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
10428491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1043aabbc4fbSShri Abhyankar 
10448491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
10458491ab44SLisandro Dalcin 
10468491ab44SLisandro Dalcin   /* write matrix header */
10478491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
10488491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
10498491ab44SLisandro Dalcin   if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);}
10508491ab44SLisandro Dalcin 
10518491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
10528491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
10538491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
10548491ab44SLisandro Dalcin     /* store row lengths for each row */
10558491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr);
10568491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
10578491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
10588491ab44SLisandro Dalcin     /* store column indices (zero start index) */
10598491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
10608491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
10618491ab44SLisandro Dalcin         iwork[k] = j;
10628491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
10638491ab44SLisandro Dalcin     ierr = PetscFree(iwork);CHKERRQ(ierr);
10648491ab44SLisandro Dalcin   }
10658491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
10668491ab44SLisandro Dalcin   ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr);
10678491ab44SLisandro Dalcin   ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr);
10688491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
10698491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
10708491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
10718491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
10728491ab44SLisandro Dalcin   ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr);
10738491ab44SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
10748491ab44SLisandro Dalcin   ierr = PetscFree(vwork);CHKERRQ(ierr);
10758491ab44SLisandro Dalcin   PetscFunctionReturn(0);
10768491ab44SLisandro Dalcin }
10778491ab44SLisandro Dalcin 
10788491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
10798491ab44SLisandro Dalcin {
10808491ab44SLisandro Dalcin   PetscErrorCode ierr;
10818491ab44SLisandro Dalcin   PetscBool      skipHeader;
10828491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
10838491ab44SLisandro Dalcin   PetscInt       rows,cols;
10848491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
10858491ab44SLisandro Dalcin 
10868491ab44SLisandro Dalcin   PetscFunctionBegin;
10878491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10888491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
10898491ab44SLisandro Dalcin 
10908491ab44SLisandro Dalcin   if (!skipHeader) {
10918491ab44SLisandro Dalcin     ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
10928491ab44SLisandro Dalcin     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
10938491ab44SLisandro Dalcin     M = header[1]; N = header[2];
10948491ab44SLisandro Dalcin     if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
10958491ab44SLisandro Dalcin     if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
10968491ab44SLisandro Dalcin     nz = header[3];
10978491ab44SLisandro Dalcin     if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz);
1098aabbc4fbSShri Abhyankar   } else {
10998491ab44SLisandro Dalcin     ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
11008491ab44SLisandro Dalcin     if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
11018491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1102e6324fbbSBarry Smith   }
1103aabbc4fbSShri Abhyankar 
11048491ab44SLisandro Dalcin   /* setup global sizes if not set */
11058491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
11068491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
11078491ab44SLisandro Dalcin   ierr = MatSetUp(mat);CHKERRQ(ierr);
11088491ab44SLisandro Dalcin   /* check if global sizes are correct */
11098491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
11108491ab44SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
1111aabbc4fbSShri Abhyankar 
11128491ab44SLisandro Dalcin   ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr);
11138491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
11148491ab44SLisandro Dalcin   ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr);
11158491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
11168491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
11178491ab44SLisandro Dalcin     PetscInt nnz = m*N;
11188491ab44SLisandro Dalcin     /* read in matrix values */
11198491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr);
11208491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
11218491ab44SLisandro Dalcin     /* store values in column major order */
11228491ab44SLisandro Dalcin     for (j=0; j<N; j++)
11238491ab44SLisandro Dalcin       for (i=0; i<m; i++)
11248491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
11258491ab44SLisandro Dalcin     ierr = PetscFree(vwork);CHKERRQ(ierr);
11268491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
11278491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
11288491ab44SLisandro Dalcin     /* read in row lengths */
11298491ab44SLisandro Dalcin     ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr);
11308491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
11318491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
11328491ab44SLisandro Dalcin     /* read in column indices and values */
11338491ab44SLisandro Dalcin     ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr);
11348491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
11358491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
11368491ab44SLisandro Dalcin     /* store values in column major order */
11378491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
11388491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
11398491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
11408491ab44SLisandro Dalcin     ierr = PetscFree(rlens);CHKERRQ(ierr);
11418491ab44SLisandro Dalcin     ierr = PetscFree2(icols,vwork);CHKERRQ(ierr);
1142aabbc4fbSShri Abhyankar   }
11438491ab44SLisandro Dalcin   ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr);
11448491ab44SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11458491ab44SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1146aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1147aabbc4fbSShri Abhyankar }
1148aabbc4fbSShri Abhyankar 
1149eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1150eb91f321SVaclav Hapla {
1151eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1152eb91f321SVaclav Hapla   PetscErrorCode ierr;
1153eb91f321SVaclav Hapla 
1154eb91f321SVaclav Hapla   PetscFunctionBegin;
1155eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1156eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1157eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1158eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1159eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1160eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
1161eb91f321SVaclav Hapla   if (isbinary) {
11628491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1163eb91f321SVaclav Hapla   } else if (ishdf5) {
1164eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
1165eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1166eb91f321SVaclav Hapla #else
1167eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1168eb91f321SVaclav Hapla #endif
1169eb91f321SVaclav Hapla   } else {
1170eb91f321SVaclav Hapla     SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1171eb91f321SVaclav Hapla   }
1172eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1173eb91f321SVaclav Hapla }
1174eb91f321SVaclav Hapla 
11756849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1176289bc588SBarry Smith {
1177932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1178dfbe8321SBarry Smith   PetscErrorCode    ierr;
117913f74950SBarry Smith   PetscInt          i,j;
11802dcb1b2aSMatthew Knepley   const char        *name;
1181ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1182f3ef73ceSBarry Smith   PetscViewerFormat format;
11835f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1184ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
11855f481a85SSatish Balay #endif
1186932b0c3eSLois Curfman McInnes 
11873a40ed3dSBarry Smith   PetscFunctionBegin;
1188ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1189b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1190456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
11913a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1192fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1193d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1194d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1195ca15aa20SStefano Zampini       v    = av + i;
119677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1197d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1198aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1199329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
120057622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1201329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
120257622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
12036831982aSBarry Smith         }
120480cd9d93SLois Curfman McInnes #else
12056831982aSBarry Smith         if (*v) {
120657622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
12076831982aSBarry Smith         }
120880cd9d93SLois Curfman McInnes #endif
12091b807ce4Svictorle         v += a->lda;
121080cd9d93SLois Curfman McInnes       }
1211b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
121280cd9d93SLois Curfman McInnes     }
1213d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
12143a40ed3dSBarry Smith   } else {
1215d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1216aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
121747989497SBarry Smith     /* determine if matrix has all real values */
1218ca15aa20SStefano Zampini     v = av;
1219d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1220ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
122147989497SBarry Smith     }
122247989497SBarry Smith #endif
1223fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
12243a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1225d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1226d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1227fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1228ffac6cdbSBarry Smith     }
1229ffac6cdbSBarry Smith 
1230d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1231ca15aa20SStefano Zampini       v = av + i;
1232d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1233aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
123447989497SBarry Smith         if (allreal) {
1235c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
123647989497SBarry Smith         } else {
1237c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
123847989497SBarry Smith         }
1239289bc588SBarry Smith #else
1240c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1241289bc588SBarry Smith #endif
12421b807ce4Svictorle         v += a->lda;
1243289bc588SBarry Smith       }
1244b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1245289bc588SBarry Smith     }
1246fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1247b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1248ffac6cdbSBarry Smith     }
1249d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1250da3a660dSBarry Smith   }
1251ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1252b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
12533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1254289bc588SBarry Smith }
1255289bc588SBarry Smith 
12569804daf3SBarry Smith #include <petscdraw.h>
1257e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1258f1af5d2fSBarry Smith {
1259f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
12606849ba73SBarry Smith   PetscErrorCode    ierr;
1261383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1262383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1263ca15aa20SStefano Zampini   const PetscScalar *v;
1264b0a32e0cSBarry Smith   PetscViewer       viewer;
1265b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1266f3ef73ceSBarry Smith   PetscViewerFormat format;
1267f1af5d2fSBarry Smith 
1268f1af5d2fSBarry Smith   PetscFunctionBegin;
1269f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1270b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1271b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1272f1af5d2fSBarry Smith 
1273f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1274ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1275fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1276383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1277f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1278f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1279383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1280f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1281f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1282f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1283ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1284ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1285ca15aa20SStefano Zampini         else continue;
1286b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1287f1af5d2fSBarry Smith       }
1288f1af5d2fSBarry Smith     }
1289383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1290f1af5d2fSBarry Smith   } else {
1291f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1292f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1293b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1294b05fc000SLisandro Dalcin     PetscDraw popup;
1295b05fc000SLisandro Dalcin 
1296f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1297f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1298f1af5d2fSBarry Smith     }
1299383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1300b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
130145f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1302383922c3SLisandro Dalcin 
1303383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1304f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1305f1af5d2fSBarry Smith       x_l = j;
1306f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1307f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1308f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1309f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1310b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1311b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1312f1af5d2fSBarry Smith       }
1313f1af5d2fSBarry Smith     }
1314383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1315f1af5d2fSBarry Smith   }
1316ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1317f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1318f1af5d2fSBarry Smith }
1319f1af5d2fSBarry Smith 
1320e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1321f1af5d2fSBarry Smith {
1322b0a32e0cSBarry Smith   PetscDraw      draw;
1323ace3abfcSBarry Smith   PetscBool      isnull;
1324329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326f1af5d2fSBarry Smith 
1327f1af5d2fSBarry Smith   PetscFunctionBegin;
1328b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1329b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1330abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1331f1af5d2fSBarry Smith 
1332d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1333f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1334b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1335832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1336b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
13370298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1338832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1339f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1340f1af5d2fSBarry Smith }
1341f1af5d2fSBarry Smith 
1342dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1343932b0c3eSLois Curfman McInnes {
1344dfbe8321SBarry Smith   PetscErrorCode ierr;
1345ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1346932b0c3eSLois Curfman McInnes 
13473a40ed3dSBarry Smith   PetscFunctionBegin;
1348251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1349251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1350251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
13510f5bd95cSBarry Smith 
1352c45a1595SBarry Smith   if (iascii) {
1353c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
13540f5bd95cSBarry Smith   } else if (isbinary) {
1355637a0070SStefano Zampini     ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr);
1356f1af5d2fSBarry Smith   } else if (isdraw) {
1357f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1358932b0c3eSLois Curfman McInnes   }
13593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1360932b0c3eSLois Curfman McInnes }
1361289bc588SBarry Smith 
1362637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1363d3042a70SBarry Smith {
1364d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1365d3042a70SBarry Smith 
1366d3042a70SBarry Smith   PetscFunctionBegin;
13676947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1368d5ea218eSStefano Zampini   if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray first");
1369d3042a70SBarry Smith   a->unplacedarray       = a->v;
1370d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1371d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1372637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1373ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1374c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1375ca15aa20SStefano Zampini #endif
1376d3042a70SBarry Smith   PetscFunctionReturn(0);
1377d3042a70SBarry Smith }
1378d3042a70SBarry Smith 
1379d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1380d3042a70SBarry Smith {
1381d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1382d3042a70SBarry Smith 
1383d3042a70SBarry Smith   PetscFunctionBegin;
13846947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1385d3042a70SBarry Smith   a->v             = a->unplacedarray;
1386d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1387d3042a70SBarry Smith   a->unplacedarray = NULL;
1388ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1389c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1390ca15aa20SStefano Zampini #endif
1391d3042a70SBarry Smith   PetscFunctionReturn(0);
1392d3042a70SBarry Smith }
1393d3042a70SBarry Smith 
1394d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1395d5ea218eSStefano Zampini {
1396d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1397d5ea218eSStefano Zampini   PetscErrorCode ierr;
1398d5ea218eSStefano Zampini 
1399d5ea218eSStefano Zampini   PetscFunctionBegin;
1400d5ea218eSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1401d5ea218eSStefano Zampini   if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); }
1402d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1403d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1404d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1405d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1406d5ea218eSStefano Zampini #endif
1407d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1408d5ea218eSStefano Zampini }
1409d5ea218eSStefano Zampini 
1410ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1411289bc588SBarry Smith {
1412ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1413dfbe8321SBarry Smith   PetscErrorCode ierr;
141490f02eecSBarry Smith 
14153a40ed3dSBarry Smith   PetscFunctionBegin;
1416aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1417d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1418a5a9c739SBarry Smith #endif
141905b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1420a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1421abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
14226857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1423637a0070SStefano Zampini   if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);}
14246947451fSStefano Zampini   ierr = VecDestroy(&l->cvec);CHKERRQ(ierr);
1425bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1426dbd8c25aSHong Zhang 
1427dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
142849a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
1429*ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
1430bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
143152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
1432d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1433d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1434d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
143552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
143652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
14376947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
14386947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
14398baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
14408baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14418baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
14428baccfbdSHong Zhang #endif
14432bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
14442bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr);
14454222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr);
14464222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr);
14474222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaijcusparse_seqdense_C",NULL);CHKERRQ(ierr);
14482bf066beSStefano Zampini #endif
1449bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
14504222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14514222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr);
1452bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
1453bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14544222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
1455a001520aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
1456a001520aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
14574222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
1458c2916339SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
1459c2916339SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
146052c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaijperm_seqdense_C",NULL);CHKERRQ(ierr);
146152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaijperm_seqdense_C",NULL);CHKERRQ(ierr);
146252c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaijsell_seqdense_C",NULL);CHKERRQ(ierr);
146352c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaijsell_seqdense_C",NULL);CHKERRQ(ierr);
146452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaijmkl_seqdense_C",NULL);CHKERRQ(ierr);
146552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaijmkl_seqdense_C",NULL);CHKERRQ(ierr);
146652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_seqdense_C",NULL);CHKERRQ(ierr);
146752c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_seqdense_C",NULL);CHKERRQ(ierr);
146852c5f739Sprj- 
14693bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14703bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
147152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaijperm_seqdense_C",NULL);CHKERRQ(ierr);
147252c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaijperm_seqdense_C",NULL);CHKERRQ(ierr);
147352c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaijsell_seqdense_C",NULL);CHKERRQ(ierr);
147452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaijsell_seqdense_C",NULL);CHKERRQ(ierr);
147552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaijmkl_seqdense_C",NULL);CHKERRQ(ierr);
147652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaijmkl_seqdense_C",NULL);CHKERRQ(ierr);
147786aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
147886aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
14796947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
14806947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
14816947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
14826947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
14836947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
14846947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
14853a40ed3dSBarry Smith   PetscFunctionReturn(0);
1486289bc588SBarry Smith }
1487289bc588SBarry Smith 
1488e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1489289bc588SBarry Smith {
1490c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
14916849ba73SBarry Smith   PetscErrorCode ierr;
149213f74950SBarry Smith   PetscInt       k,j,m,n,M;
149387828ca2SBarry Smith   PetscScalar    *v,tmp;
149448b35521SBarry Smith 
14953a40ed3dSBarry Smith   PetscFunctionBegin;
1496ca15aa20SStefano Zampini   m = A->rmap->n; M = mat->lda; n = A->cmap->n;
14972847e3fdSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX && m == n) { /* in place transpose */
1498ca15aa20SStefano Zampini     ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1499d3e5ee88SLois Curfman McInnes     for (j=0; j<m; j++) {
1500289bc588SBarry Smith       for (k=0; k<j; k++) {
15011b807ce4Svictorle         tmp        = v[j + k*M];
15021b807ce4Svictorle         v[j + k*M] = v[k + j*M];
15031b807ce4Svictorle         v[k + j*M] = tmp;
1504289bc588SBarry Smith       }
1505289bc588SBarry Smith     }
1506ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
15073a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1508d3e5ee88SLois Curfman McInnes     Mat          tmat;
1509ec8511deSBarry Smith     Mat_SeqDense *tmatd;
151087828ca2SBarry Smith     PetscScalar  *v2;
1511af36a384SStefano Zampini     PetscInt     M2;
1512ea709b57SSatish Balay 
15132847e3fdSStefano Zampini     if (reuse != MAT_REUSE_MATRIX) {
1514ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1515d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
15167adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
15170298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1518ca15aa20SStefano Zampini     } else tmat = *matout;
1519ca15aa20SStefano Zampini 
1520ca15aa20SStefano Zampini     ierr  = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
1521ca15aa20SStefano Zampini     ierr  = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr);
1522ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1523ca15aa20SStefano Zampini     M2    = tmatd->lda;
1524d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1525af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1526d3e5ee88SLois Curfman McInnes     }
1527ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr);
1528ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
15296d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15306d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15312847e3fdSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = tmat;
15322847e3fdSStefano Zampini     else {
15332847e3fdSStefano Zampini       ierr = MatHeaderMerge(A,&tmat);CHKERRQ(ierr);
15342847e3fdSStefano Zampini     }
153548b35521SBarry Smith   }
15363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1537289bc588SBarry Smith }
1538289bc588SBarry Smith 
1539e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1540289bc588SBarry Smith {
1541c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1542c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1543ca15aa20SStefano Zampini   PetscInt          i;
1544ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
1545ca15aa20SStefano Zampini   PetscErrorCode    ierr;
15469ea5d5aeSSatish Balay 
15473a40ed3dSBarry Smith   PetscFunctionBegin;
1548d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1549d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1550ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr);
1551ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr);
1552ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
1553ca15aa20SStefano Zampini     ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr);
1554ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1555ca15aa20SStefano Zampini     v1 += mat1->lda;
1556ca15aa20SStefano Zampini     v2 += mat2->lda;
15571b807ce4Svictorle   }
1558ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr);
1559ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr);
156077c4ece6SBarry Smith   *flg = PETSC_TRUE;
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1562289bc588SBarry Smith }
1563289bc588SBarry Smith 
1564e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1565289bc588SBarry Smith {
1566c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
156713f74950SBarry Smith   PetscInt          i,n,len;
1568ca15aa20SStefano Zampini   PetscScalar       *x;
1569ca15aa20SStefano Zampini   const PetscScalar *vv;
1570ca15aa20SStefano Zampini   PetscErrorCode    ierr;
157144cd7ae7SLois Curfman McInnes 
15723a40ed3dSBarry Smith   PetscFunctionBegin;
15737a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
15741ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1575d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1576ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1577e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
157844cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1579ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1580289bc588SBarry Smith   }
1581ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
15821ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
15833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1584289bc588SBarry Smith }
1585289bc588SBarry Smith 
1586e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1587289bc588SBarry Smith {
1588c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1589f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1590ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1591dfbe8321SBarry Smith   PetscErrorCode    ierr;
1592d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
159355659b69SBarry Smith 
15943a40ed3dSBarry Smith   PetscFunctionBegin;
1595ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr);
159628988994SBarry Smith   if (ll) {
15977a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1598f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1599e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1600da3a660dSBarry Smith     for (i=0; i<m; i++) {
1601da3a660dSBarry Smith       x = l[i];
1602ca15aa20SStefano Zampini       v = vv + i;
1603b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1604da3a660dSBarry Smith     }
1605f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1606eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1607da3a660dSBarry Smith   }
160828988994SBarry Smith   if (rr) {
16097a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1610f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1611e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1612da3a660dSBarry Smith     for (i=0; i<n; i++) {
1613da3a660dSBarry Smith       x = r[i];
1614ca15aa20SStefano Zampini       v = vv + i*mat->lda;
16152205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1616da3a660dSBarry Smith     }
1617f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1618eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1619da3a660dSBarry Smith   }
1620ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr);
16213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1622289bc588SBarry Smith }
1623289bc588SBarry Smith 
1624ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1625289bc588SBarry Smith {
1626c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1627ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1628329f5518SBarry Smith   PetscReal         sum  = 0.0;
1629d0f46423SBarry Smith   PetscInt          lda  =mat->lda,m=A->rmap->n,i,j;
1630efee365bSSatish Balay   PetscErrorCode    ierr;
163155659b69SBarry Smith 
16323a40ed3dSBarry Smith   PetscFunctionBegin;
1633ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
1634ca15aa20SStefano Zampini   v    = vv;
1635289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1636a5ce6ee0Svictorle     if (lda>m) {
1637d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1638ca15aa20SStefano Zampini         v = vv+j*lda;
1639a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1640a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1641a5ce6ee0Svictorle         }
1642a5ce6ee0Svictorle       }
1643a5ce6ee0Svictorle     } else {
1644570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1645570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
1646570b7f6dSBarry Smith       *nrm = BLASnrm2_(&cnt,v,&one);
1647570b7f6dSBarry Smith     }
1648570b7f6dSBarry Smith #else
1649d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1650329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1651289bc588SBarry Smith       }
1652a5ce6ee0Svictorle     }
16538f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
1654570b7f6dSBarry Smith #endif
1655dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
16563a40ed3dSBarry Smith   } else if (type == NORM_1) {
1657064f8208SBarry Smith     *nrm = 0.0;
1658d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1659ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
1660289bc588SBarry Smith       sum = 0.0;
1661d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
166233a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1663289bc588SBarry Smith       }
1664064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1665289bc588SBarry Smith     }
1666eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
16673a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1668064f8208SBarry Smith     *nrm = 0.0;
1669d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
1670ca15aa20SStefano Zampini       v   = vv + j;
1671289bc588SBarry Smith       sum = 0.0;
1672d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
16731b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1674289bc588SBarry Smith       }
1675064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1676289bc588SBarry Smith     }
1677eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
1678e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
1679ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
16803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1681289bc588SBarry Smith }
1682289bc588SBarry Smith 
1683e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
1684289bc588SBarry Smith {
1685c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
168663ba0a88SBarry Smith   PetscErrorCode ierr;
168767e560aaSBarry Smith 
16883a40ed3dSBarry Smith   PetscFunctionBegin;
1689b5a2b587SKris Buschelman   switch (op) {
1690b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
16914e0d8c25SBarry Smith     aij->roworiented = flg;
1692b5a2b587SKris Buschelman     break;
1693512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1694b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16953971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
16964e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
169713fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
1698b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1699b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
17000f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
17015021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
1702071fcb05SBarry Smith   case MAT_SORTED_FULL:
17035021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
17045021d80fSJed Brown     break;
17055021d80fSJed Brown   case MAT_SPD:
170677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
170777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
17089a4540c5SBarry Smith   case MAT_HERMITIAN:
17099a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
17105021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
171177e54ba9SKris Buschelman     break;
1712b5a2b587SKris Buschelman   default:
1713e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
17143a40ed3dSBarry Smith   }
17153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1716289bc588SBarry Smith }
1717289bc588SBarry Smith 
1718e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
17196f0a148fSBarry Smith {
1720ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
17216849ba73SBarry Smith   PetscErrorCode ierr;
1722d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
1723ca15aa20SStefano Zampini   PetscScalar    *v;
17243a40ed3dSBarry Smith 
17253a40ed3dSBarry Smith   PetscFunctionBegin;
1726ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1727a5ce6ee0Svictorle   if (lda>m) {
1728d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1729ca15aa20SStefano Zampini       ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr);
1730a5ce6ee0Svictorle     }
1731a5ce6ee0Svictorle   } else {
1732ca15aa20SStefano Zampini     ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
1733a5ce6ee0Svictorle   }
1734ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
17353a40ed3dSBarry Smith   PetscFunctionReturn(0);
17366f0a148fSBarry Smith }
17376f0a148fSBarry Smith 
1738e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17396f0a148fSBarry Smith {
174097b48c8fSBarry Smith   PetscErrorCode    ierr;
1741ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1742b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
1743ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
174497b48c8fSBarry Smith   const PetscScalar *xx;
174555659b69SBarry Smith 
17463a40ed3dSBarry Smith   PetscFunctionBegin;
174776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1748b9679d65SBarry Smith     for (i=0; i<N; i++) {
1749b9679d65SBarry Smith       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1750b9679d65SBarry Smith       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1751b9679d65SBarry Smith     }
175276bd3646SJed Brown   }
1753ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1754b9679d65SBarry Smith 
175597b48c8fSBarry Smith   /* fix right hand side if needed */
175697b48c8fSBarry Smith   if (x && b) {
175797b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
175897b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
17592205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
176097b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
176197b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
176297b48c8fSBarry Smith   }
176397b48c8fSBarry Smith 
1764ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
17656f0a148fSBarry Smith   for (i=0; i<N; i++) {
1766ca15aa20SStefano Zampini     slot = v + rows[i];
1767b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
17686f0a148fSBarry Smith   }
1769f4df32b1SMatthew Knepley   if (diag != 0.0) {
1770b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
17716f0a148fSBarry Smith     for (i=0; i<N; i++) {
1772ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1773f4df32b1SMatthew Knepley       *slot = diag;
17746f0a148fSBarry Smith     }
17756f0a148fSBarry Smith   }
1776ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
17773a40ed3dSBarry Smith   PetscFunctionReturn(0);
17786f0a148fSBarry Smith }
1779557bce09SLois Curfman McInnes 
178049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
178149a6ff4bSBarry Smith {
178249a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
178349a6ff4bSBarry Smith 
178449a6ff4bSBarry Smith   PetscFunctionBegin;
178549a6ff4bSBarry Smith   *lda = mat->lda;
178649a6ff4bSBarry Smith   PetscFunctionReturn(0);
178749a6ff4bSBarry Smith }
178849a6ff4bSBarry Smith 
1789637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
179064e87e97SBarry Smith {
1791c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
17923a40ed3dSBarry Smith 
17933a40ed3dSBarry Smith   PetscFunctionBegin;
179464e87e97SBarry Smith   *array = mat->v;
17953a40ed3dSBarry Smith   PetscFunctionReturn(0);
179664e87e97SBarry Smith }
17970754003eSLois Curfman McInnes 
1798637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
1799ff14e315SSatish Balay {
18003a40ed3dSBarry Smith   PetscFunctionBegin;
1801637a0070SStefano Zampini   *array = NULL;
18023a40ed3dSBarry Smith   PetscFunctionReturn(0);
1803ff14e315SSatish Balay }
18040754003eSLois Curfman McInnes 
1805dec5eb66SMatthew G Knepley /*@C
180649a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
180749a6ff4bSBarry Smith 
1808*ad16ce7aSStefano Zampini    Not collective
180949a6ff4bSBarry Smith 
181049a6ff4bSBarry Smith    Input Parameter:
181149a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
181249a6ff4bSBarry Smith 
181349a6ff4bSBarry Smith    Output Parameter:
181449a6ff4bSBarry Smith .   lda - the leading dimension
181549a6ff4bSBarry Smith 
181649a6ff4bSBarry Smith    Level: intermediate
181749a6ff4bSBarry Smith 
1818*ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
181949a6ff4bSBarry Smith @*/
182049a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
182149a6ff4bSBarry Smith {
182249a6ff4bSBarry Smith   PetscErrorCode ierr;
182349a6ff4bSBarry Smith 
182449a6ff4bSBarry Smith   PetscFunctionBegin;
1825d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1826d5ea218eSStefano Zampini   PetscValidPointer(lda,2);
182749a6ff4bSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr);
182849a6ff4bSBarry Smith   PetscFunctionReturn(0);
182949a6ff4bSBarry Smith }
183049a6ff4bSBarry Smith 
183149a6ff4bSBarry Smith /*@C
1832*ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
1833*ad16ce7aSStefano Zampini 
1834*ad16ce7aSStefano Zampini    Not collective
1835*ad16ce7aSStefano Zampini 
1836*ad16ce7aSStefano Zampini    Input Parameter:
1837*ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
1838*ad16ce7aSStefano Zampini -  lda - the leading dimension
1839*ad16ce7aSStefano Zampini 
1840*ad16ce7aSStefano Zampini    Level: intermediate
1841*ad16ce7aSStefano Zampini 
1842*ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
1843*ad16ce7aSStefano Zampini @*/
1844*ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
1845*ad16ce7aSStefano Zampini {
1846*ad16ce7aSStefano Zampini   PetscErrorCode ierr;
1847*ad16ce7aSStefano Zampini 
1848*ad16ce7aSStefano Zampini   PetscFunctionBegin;
1849*ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1850*ad16ce7aSStefano Zampini   ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr);
1851*ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
1852*ad16ce7aSStefano Zampini }
1853*ad16ce7aSStefano Zampini 
1854*ad16ce7aSStefano Zampini /*@C
18556947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
185673a71a0fSBarry Smith 
18578572280aSBarry Smith    Logically Collective on Mat
185873a71a0fSBarry Smith 
185973a71a0fSBarry Smith    Input Parameter:
18606947451fSStefano Zampini .  mat - a dense matrix
186173a71a0fSBarry Smith 
186273a71a0fSBarry Smith    Output Parameter:
186373a71a0fSBarry Smith .   array - pointer to the data
186473a71a0fSBarry Smith 
186573a71a0fSBarry Smith    Level: intermediate
186673a71a0fSBarry Smith 
18676947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
186873a71a0fSBarry Smith @*/
18698c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
187073a71a0fSBarry Smith {
187173a71a0fSBarry Smith   PetscErrorCode ierr;
187273a71a0fSBarry Smith 
187373a71a0fSBarry Smith   PetscFunctionBegin;
1874d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1875d5ea218eSStefano Zampini   PetscValidPointer(array,2);
18768c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
187773a71a0fSBarry Smith   PetscFunctionReturn(0);
187873a71a0fSBarry Smith }
187973a71a0fSBarry Smith 
1880dec5eb66SMatthew G Knepley /*@C
1881579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
188273a71a0fSBarry Smith 
18838572280aSBarry Smith    Logically Collective on Mat
18848572280aSBarry Smith 
18858572280aSBarry Smith    Input Parameters:
18866947451fSStefano Zampini +  mat - a dense matrix
1887a2b725a8SWilliam Gropp -  array - pointer to the data
18888572280aSBarry Smith 
18898572280aSBarry Smith    Level: intermediate
18908572280aSBarry Smith 
18916947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
18928572280aSBarry Smith @*/
18938572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
18948572280aSBarry Smith {
18958572280aSBarry Smith   PetscErrorCode ierr;
18968572280aSBarry Smith 
18978572280aSBarry Smith   PetscFunctionBegin;
1898d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1899d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19008572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
19018572280aSBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1902637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1903637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1904637a0070SStefano Zampini #endif
19058572280aSBarry Smith   PetscFunctionReturn(0);
19068572280aSBarry Smith }
19078572280aSBarry Smith 
19088572280aSBarry Smith /*@C
19096947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
19108572280aSBarry Smith 
19118572280aSBarry Smith    Not Collective
19128572280aSBarry Smith 
19138572280aSBarry Smith    Input Parameter:
19146947451fSStefano Zampini .  mat - a dense matrix
19158572280aSBarry Smith 
19168572280aSBarry Smith    Output Parameter:
19178572280aSBarry Smith .   array - pointer to the data
19188572280aSBarry Smith 
19198572280aSBarry Smith    Level: intermediate
19208572280aSBarry Smith 
19216947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
19228572280aSBarry Smith @*/
19238572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
19248572280aSBarry Smith {
19258572280aSBarry Smith   PetscErrorCode ierr;
19268572280aSBarry Smith 
19278572280aSBarry Smith   PetscFunctionBegin;
1928d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1929d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19308572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
19318572280aSBarry Smith   PetscFunctionReturn(0);
19328572280aSBarry Smith }
19338572280aSBarry Smith 
19348572280aSBarry Smith /*@C
19356947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
19368572280aSBarry Smith 
193773a71a0fSBarry Smith    Not Collective
193873a71a0fSBarry Smith 
193973a71a0fSBarry Smith    Input Parameters:
19406947451fSStefano Zampini +  mat - a dense matrix
1941a2b725a8SWilliam Gropp -  array - pointer to the data
194273a71a0fSBarry Smith 
194373a71a0fSBarry Smith    Level: intermediate
194473a71a0fSBarry Smith 
19456947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
194673a71a0fSBarry Smith @*/
19478572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
194873a71a0fSBarry Smith {
194973a71a0fSBarry Smith   PetscErrorCode ierr;
195073a71a0fSBarry Smith 
195173a71a0fSBarry Smith   PetscFunctionBegin;
1952d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1953d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19548572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
195573a71a0fSBarry Smith   PetscFunctionReturn(0);
195673a71a0fSBarry Smith }
195773a71a0fSBarry Smith 
19586947451fSStefano Zampini /*@C
19596947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
19606947451fSStefano Zampini 
19616947451fSStefano Zampini    Not Collective
19626947451fSStefano Zampini 
19636947451fSStefano Zampini    Input Parameter:
19646947451fSStefano Zampini .  mat - a dense matrix
19656947451fSStefano Zampini 
19666947451fSStefano Zampini    Output Parameter:
19676947451fSStefano Zampini .   array - pointer to the data
19686947451fSStefano Zampini 
19696947451fSStefano Zampini    Level: intermediate
19706947451fSStefano Zampini 
19716947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
19726947451fSStefano Zampini @*/
19736947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
19746947451fSStefano Zampini {
19756947451fSStefano Zampini   PetscErrorCode ierr;
19766947451fSStefano Zampini 
19776947451fSStefano Zampini   PetscFunctionBegin;
1978d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1979d5ea218eSStefano Zampini   PetscValidPointer(array,2);
19806947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
19816947451fSStefano Zampini   PetscFunctionReturn(0);
19826947451fSStefano Zampini }
19836947451fSStefano Zampini 
19846947451fSStefano Zampini /*@C
19856947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
19866947451fSStefano Zampini 
19876947451fSStefano Zampini    Not Collective
19886947451fSStefano Zampini 
19896947451fSStefano Zampini    Input Parameters:
19906947451fSStefano Zampini +  mat - a dense matrix
19916947451fSStefano Zampini -  array - pointer to the data
19926947451fSStefano Zampini 
19936947451fSStefano Zampini    Level: intermediate
19946947451fSStefano Zampini 
19956947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
19966947451fSStefano Zampini @*/
19976947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
19986947451fSStefano Zampini {
19996947451fSStefano Zampini   PetscErrorCode ierr;
20006947451fSStefano Zampini 
20016947451fSStefano Zampini   PetscFunctionBegin;
2002d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2003d5ea218eSStefano Zampini   PetscValidPointer(array,2);
20046947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
20056947451fSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
20066947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
20076947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
20086947451fSStefano Zampini #endif
20096947451fSStefano Zampini   PetscFunctionReturn(0);
20106947451fSStefano Zampini }
20116947451fSStefano Zampini 
20127dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
20130754003eSLois Curfman McInnes {
2014c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
20156849ba73SBarry Smith   PetscErrorCode ierr;
2016ca15aa20SStefano Zampini   PetscInt       i,j,nrows,ncols,blda;
20175d0c19d7SBarry Smith   const PetscInt *irow,*icol;
201887828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
20190754003eSLois Curfman McInnes   Mat            newmat;
20200754003eSLois Curfman McInnes 
20213a40ed3dSBarry Smith   PetscFunctionBegin;
202278b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
202378b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
2024e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
2025e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
20260754003eSLois Curfman McInnes 
2027182d2002SSatish Balay   /* Check submatrixcall */
2028182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
202913f74950SBarry Smith     PetscInt n_cols,n_rows;
2030182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
203121a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2032f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
2033c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
203421a2c019SBarry Smith     }
2035182d2002SSatish Balay     newmat = *B;
2036182d2002SSatish Balay   } else {
20370754003eSLois Curfman McInnes     /* Create and fill new matrix */
2038ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2039f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
20407adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
20410298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
2042182d2002SSatish Balay   }
2043182d2002SSatish Balay 
2044182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
2045ca15aa20SStefano Zampini   ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr);
2046ca15aa20SStefano Zampini   ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr);
2047182d2002SSatish Balay   for (i=0; i<ncols; i++) {
20486de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2049ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2050ca15aa20SStefano Zampini     bv += blda;
20510754003eSLois Curfman McInnes   }
2052ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr);
2053182d2002SSatish Balay 
2054182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
20556d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20566d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20570754003eSLois Curfman McInnes 
20580754003eSLois Curfman McInnes   /* Free work space */
205978b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
206078b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
2061182d2002SSatish Balay   *B   = newmat;
20623a40ed3dSBarry Smith   PetscFunctionReturn(0);
20630754003eSLois Curfman McInnes }
20640754003eSLois Curfman McInnes 
20657dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2066905e6a2fSBarry Smith {
20676849ba73SBarry Smith   PetscErrorCode ierr;
206813f74950SBarry Smith   PetscInt       i;
2069905e6a2fSBarry Smith 
20703a40ed3dSBarry Smith   PetscFunctionBegin;
2071905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
2072df750dc8SHong Zhang     ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr);
2073905e6a2fSBarry Smith   }
2074905e6a2fSBarry Smith 
2075905e6a2fSBarry Smith   for (i=0; i<n; i++) {
20767dae84e0SHong Zhang     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr);
2077905e6a2fSBarry Smith   }
20783a40ed3dSBarry Smith   PetscFunctionReturn(0);
2079905e6a2fSBarry Smith }
2080905e6a2fSBarry Smith 
2081e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2082c0aa2d19SHong Zhang {
2083c0aa2d19SHong Zhang   PetscFunctionBegin;
2084c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2085c0aa2d19SHong Zhang }
2086c0aa2d19SHong Zhang 
2087e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2088c0aa2d19SHong Zhang {
2089c0aa2d19SHong Zhang   PetscFunctionBegin;
2090c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2091c0aa2d19SHong Zhang }
2092c0aa2d19SHong Zhang 
2093e0877f53SBarry Smith static PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
20944b0e389bSBarry Smith {
20954b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
20966849ba73SBarry Smith   PetscErrorCode    ierr;
2097ca15aa20SStefano Zampini   const PetscScalar *va;
2098ca15aa20SStefano Zampini   PetscScalar       *vb;
2099d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
21003a40ed3dSBarry Smith 
21013a40ed3dSBarry Smith   PetscFunctionBegin;
210233f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
210333f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
2104cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
21053a40ed3dSBarry Smith     PetscFunctionReturn(0);
21063a40ed3dSBarry Smith   }
2107e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
2108ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr);
2109ca15aa20SStefano Zampini   ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr);
2110a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
21110dbb7854Svictorle     for (j=0; j<n; j++) {
2112ca15aa20SStefano Zampini       ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr);
2113a5ce6ee0Svictorle     }
2114a5ce6ee0Svictorle   } else {
2115ca15aa20SStefano Zampini     ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2116a5ce6ee0Svictorle   }
2117ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr);
2118ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr);
2119ca15aa20SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2120ca15aa20SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2121273d9f13SBarry Smith   PetscFunctionReturn(0);
2122273d9f13SBarry Smith }
2123273d9f13SBarry Smith 
2124e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
2125273d9f13SBarry Smith {
2126dfbe8321SBarry Smith   PetscErrorCode ierr;
2127273d9f13SBarry Smith 
2128273d9f13SBarry Smith   PetscFunctionBegin;
212918992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
213018992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
213118992e5dSStefano Zampini   if (!A->preallocated) {
2132273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr);
213318992e5dSStefano Zampini   }
21343a40ed3dSBarry Smith   PetscFunctionReturn(0);
21354b0e389bSBarry Smith }
21364b0e389bSBarry Smith 
2137ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2138ba337c44SJed Brown {
2139ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2140ca15aa20SStefano Zampini   PetscScalar    *aa;
2141ca15aa20SStefano Zampini   PetscErrorCode ierr;
2142ba337c44SJed Brown 
2143ba337c44SJed Brown   PetscFunctionBegin;
2144ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2145ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
2146ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2147ba337c44SJed Brown   PetscFunctionReturn(0);
2148ba337c44SJed Brown }
2149ba337c44SJed Brown 
2150ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2151ba337c44SJed Brown {
2152ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2153ca15aa20SStefano Zampini   PetscScalar    *aa;
2154ca15aa20SStefano Zampini   PetscErrorCode ierr;
2155ba337c44SJed Brown 
2156ba337c44SJed Brown   PetscFunctionBegin;
2157ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2158ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
2159ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2160ba337c44SJed Brown   PetscFunctionReturn(0);
2161ba337c44SJed Brown }
2162ba337c44SJed Brown 
2163ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2164ba337c44SJed Brown {
2165ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2166ca15aa20SStefano Zampini   PetscScalar    *aa;
2167ca15aa20SStefano Zampini   PetscErrorCode ierr;
2168ba337c44SJed Brown 
2169ba337c44SJed Brown   PetscFunctionBegin;
2170ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2171ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
2172ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2173ba337c44SJed Brown   PetscFunctionReturn(0);
2174ba337c44SJed Brown }
2175284134d9SBarry Smith 
2176a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
21774222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2178a9fe9ddaSSatish Balay {
2179ee16a9a1SHong Zhang   PetscErrorCode ierr;
2180d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
21817a3c3d58SStefano Zampini   PetscBool      cisdense;
2182a9fe9ddaSSatish Balay 
2183ee16a9a1SHong Zhang   PetscFunctionBegin;
21844222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
21857a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
21867a3c3d58SStefano Zampini   if (!cisdense) {
21877a3c3d58SStefano Zampini     PetscBool flg;
21887a3c3d58SStefano Zampini 
2189ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
21904222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
21917a3c3d58SStefano Zampini   }
219218992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2193ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2194ee16a9a1SHong Zhang }
2195a9fe9ddaSSatish Balay 
2196a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2197a9fe9ddaSSatish Balay {
219852c5f739Sprj-   Mat_SeqDense       *a,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
21990805154bSBarry Smith   PetscBLASInt       m,n,k;
2200ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2201ca15aa20SStefano Zampini   PetscScalar       *cv;
2202a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2203fd4e9aacSBarry Smith   PetscBool         flg;
2204c2916339SPierre Jolivet   PetscErrorCode    (*numeric)(Mat,Mat,Mat)=NULL;
2205c2916339SPierre Jolivet   PetscErrorCode    ierr;
2206a9fe9ddaSSatish Balay 
2207a9fe9ddaSSatish Balay   PetscFunctionBegin;
2208fd4e9aacSBarry Smith   /* Handle case where where user provided the final C matrix rather than calling MatMatMult() with MAT_INITIAL_MATRIX*/
2209fd4e9aacSBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);CHKERRQ(ierr);
2210c2916339SPierre Jolivet   if (flg) numeric = MatMatMultNumeric_SeqAIJ_SeqDense;
2211a001520aSPierre Jolivet   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&flg);CHKERRQ(ierr);
2212c2916339SPierre Jolivet   if (flg) numeric = MatMatMultNumeric_SeqBAIJ_SeqDense;
2213c2916339SPierre Jolivet   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQSBAIJ,&flg);CHKERRQ(ierr);
2214c2916339SPierre Jolivet   if (flg) numeric = MatMatMultNumeric_SeqSBAIJ_SeqDense;
221552c5f739Sprj-   ierr = PetscObjectTypeCompare((PetscObject)A,MATNEST,&flg);CHKERRQ(ierr);
2216c2916339SPierre Jolivet   if (flg) numeric = MatMatMultNumeric_Nest_Dense;
2217c2916339SPierre Jolivet   if (numeric) {
2218c2916339SPierre Jolivet     C->ops->matmultnumeric = numeric;
2219c2916339SPierre Jolivet     ierr = (*numeric)(A,B,C);CHKERRQ(ierr);
222052c5f739Sprj-     PetscFunctionReturn(0);
222152c5f739Sprj-   }
222252c5f739Sprj-   a = (Mat_SeqDense*)A->data;
22238208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
22248208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2225c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
222649d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2227ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2228ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
2229ca15aa20SStefano Zampini   ierr = MatDenseGetArray(C,&cv);CHKERRQ(ierr);
2230ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2231ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2232ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2233ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
2234ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(C,&cv);CHKERRQ(ierr);
2235a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2236a9fe9ddaSSatish Balay }
2237a9fe9ddaSSatish Balay 
22384222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
223969f65d41SStefano Zampini {
224069f65d41SStefano Zampini   PetscErrorCode ierr;
224169f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
22427a3c3d58SStefano Zampini   PetscBool      cisdense;
224369f65d41SStefano Zampini 
224469f65d41SStefano Zampini   PetscFunctionBegin;
22454222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
22467a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
22477a3c3d58SStefano Zampini   if (!cisdense) {
22487a3c3d58SStefano Zampini     PetscBool flg;
22497a3c3d58SStefano Zampini 
2250ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
22514222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
22527a3c3d58SStefano Zampini   }
225318992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
225469f65d41SStefano Zampini   PetscFunctionReturn(0);
225569f65d41SStefano Zampini }
225669f65d41SStefano Zampini 
225769f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
225869f65d41SStefano Zampini {
225969f65d41SStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
226069f65d41SStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
226169f65d41SStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
226269f65d41SStefano Zampini   PetscBLASInt   m,n,k;
226369f65d41SStefano Zampini   PetscScalar    _DOne=1.0,_DZero=0.0;
226469f65d41SStefano Zampini   PetscErrorCode ierr;
226569f65d41SStefano Zampini 
226669f65d41SStefano Zampini   PetscFunctionBegin;
226749d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
226849d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
226969f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
227049d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
227169f65d41SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda));
2272ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
227369f65d41SStefano Zampini   PetscFunctionReturn(0);
227469f65d41SStefano Zampini }
227569f65d41SStefano Zampini 
22764222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2277a9fe9ddaSSatish Balay {
2278ee16a9a1SHong Zhang   PetscErrorCode ierr;
2279d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
22807a3c3d58SStefano Zampini   PetscBool      cisdense;
2281a9fe9ddaSSatish Balay 
2282ee16a9a1SHong Zhang   PetscFunctionBegin;
22834222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
22847a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
22857a3c3d58SStefano Zampini   if (!cisdense) {
22867a3c3d58SStefano Zampini     PetscBool flg;
22877a3c3d58SStefano Zampini 
2288ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
22894222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
22907a3c3d58SStefano Zampini   }
229118992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2292ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2293ee16a9a1SHong Zhang }
2294a9fe9ddaSSatish Balay 
229575648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2296a9fe9ddaSSatish Balay {
2297a9fe9ddaSSatish Balay   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2298a9fe9ddaSSatish Balay   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
2299a9fe9ddaSSatish Balay   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
23000805154bSBarry Smith   PetscBLASInt   m,n,k;
2301a9fe9ddaSSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
2302c5df96a5SBarry Smith   PetscErrorCode ierr;
2303a9fe9ddaSSatish Balay 
2304a9fe9ddaSSatish Balay   PetscFunctionBegin;
23058208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
23068208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2307c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
230849d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
23095ca1cc5dSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda));
2310ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2311a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2312a9fe9ddaSSatish Balay }
2313985db425SBarry Smith 
23144222ddf1SHong Zhang /* ----------------------------------------------- */
23154222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
23164222ddf1SHong Zhang {
23174222ddf1SHong Zhang   PetscFunctionBegin;
23184222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
23194222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
23204222ddf1SHong Zhang   /* dense mat may not call MatProductSymbolic(), thus set C->ops->productnumeric here */
23214222ddf1SHong Zhang   C->ops->productnumeric  = MatProductNumeric_AB;
23224222ddf1SHong Zhang   PetscFunctionReturn(0);
23234222ddf1SHong Zhang }
23244222ddf1SHong Zhang 
23254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
23264222ddf1SHong Zhang {
23274222ddf1SHong Zhang   PetscFunctionBegin;
23284222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
23294222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
23304222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_AtB;
23314222ddf1SHong Zhang   PetscFunctionReturn(0);
23324222ddf1SHong Zhang }
23334222ddf1SHong Zhang 
23344222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
23354222ddf1SHong Zhang {
23364222ddf1SHong Zhang   PetscFunctionBegin;
23374222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
23384222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
23394222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_ABt;
23404222ddf1SHong Zhang   PetscFunctionReturn(0);
23414222ddf1SHong Zhang }
23424222ddf1SHong Zhang 
23434222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_PtAP(Mat C)
23444222ddf1SHong Zhang {
23454222ddf1SHong Zhang   PetscFunctionBegin;
23464222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_Basic;
23474222ddf1SHong Zhang   PetscFunctionReturn(0);
23484222ddf1SHong Zhang }
23494222ddf1SHong Zhang 
23504222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
23514222ddf1SHong Zhang {
23524222ddf1SHong Zhang   PetscErrorCode ierr;
23534222ddf1SHong Zhang   Mat_Product    *product = C->product;
23544222ddf1SHong Zhang 
23554222ddf1SHong Zhang   PetscFunctionBegin;
23564222ddf1SHong Zhang   switch (product->type) {
23574222ddf1SHong Zhang   case MATPRODUCT_AB:
23584222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr);
23594222ddf1SHong Zhang     break;
23604222ddf1SHong Zhang   case MATPRODUCT_AtB:
23614222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr);
23624222ddf1SHong Zhang     break;
23634222ddf1SHong Zhang   case MATPRODUCT_ABt:
23644222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr);
23654222ddf1SHong Zhang     break;
23664222ddf1SHong Zhang   case MATPRODUCT_PtAP:
23675aae2c7aSStefano Zampini   case MATPRODUCT_RARt:
23684222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_PtAP(C);CHKERRQ(ierr);
23694222ddf1SHong Zhang     break;
2370544a5e07SHong Zhang   default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for SeqDense and SeqDense matrices",MatProductTypes[product->type]);
23714222ddf1SHong Zhang   }
23724222ddf1SHong Zhang   PetscFunctionReturn(0);
23734222ddf1SHong Zhang }
23744222ddf1SHong Zhang /* ----------------------------------------------- */
23754222ddf1SHong Zhang 
2376e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2377985db425SBarry Smith {
2378985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2379985db425SBarry Smith   PetscErrorCode     ierr;
2380d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2381985db425SBarry Smith   PetscScalar        *x;
2382ca15aa20SStefano Zampini   const PetscScalar *aa;
2383985db425SBarry Smith 
2384985db425SBarry Smith   PetscFunctionBegin;
2385e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2386985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2387985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2388ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2389e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2390985db425SBarry Smith   for (i=0; i<m; i++) {
2391985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2392985db425SBarry Smith     for (j=1; j<n; j++) {
2393ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2394985db425SBarry Smith     }
2395985db425SBarry Smith   }
2396ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2397985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2398985db425SBarry Smith   PetscFunctionReturn(0);
2399985db425SBarry Smith }
2400985db425SBarry Smith 
2401e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2402985db425SBarry Smith {
2403985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2404985db425SBarry Smith   PetscErrorCode    ierr;
2405d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2406985db425SBarry Smith   PetscScalar       *x;
2407985db425SBarry Smith   PetscReal         atmp;
2408ca15aa20SStefano Zampini   const PetscScalar *aa;
2409985db425SBarry Smith 
2410985db425SBarry Smith   PetscFunctionBegin;
2411e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2412985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2413985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2414ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2415e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2416985db425SBarry Smith   for (i=0; i<m; i++) {
24179189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2418985db425SBarry Smith     for (j=1; j<n; j++) {
2419ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2420985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2421985db425SBarry Smith     }
2422985db425SBarry Smith   }
2423ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2424985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2425985db425SBarry Smith   PetscFunctionReturn(0);
2426985db425SBarry Smith }
2427985db425SBarry Smith 
2428e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2429985db425SBarry Smith {
2430985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2431985db425SBarry Smith   PetscErrorCode    ierr;
2432d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2433985db425SBarry Smith   PetscScalar       *x;
2434ca15aa20SStefano Zampini   const PetscScalar *aa;
2435985db425SBarry Smith 
2436985db425SBarry Smith   PetscFunctionBegin;
2437e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2438ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2439985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2440985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2441e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2442985db425SBarry Smith   for (i=0; i<m; i++) {
2443985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2444985db425SBarry Smith     for (j=1; j<n; j++) {
2445ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2446985db425SBarry Smith     }
2447985db425SBarry Smith   }
2448985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2449ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2450985db425SBarry Smith   PetscFunctionReturn(0);
2451985db425SBarry Smith }
2452985db425SBarry Smith 
2453637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
24548d0534beSBarry Smith {
24558d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
24568d0534beSBarry Smith   PetscErrorCode    ierr;
24578d0534beSBarry Smith   PetscScalar       *x;
2458ca15aa20SStefano Zampini   const PetscScalar *aa;
24598d0534beSBarry Smith 
24608d0534beSBarry Smith   PetscFunctionBegin;
2461e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2462ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
24638d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2464ca15aa20SStefano Zampini   ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr);
24658d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2466ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
24678d0534beSBarry Smith   PetscFunctionReturn(0);
24688d0534beSBarry Smith }
24698d0534beSBarry Smith 
247052c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
24710716a85fSBarry Smith {
24720716a85fSBarry Smith   PetscErrorCode    ierr;
24730716a85fSBarry Smith   PetscInt          i,j,m,n;
24741683a169SBarry Smith   const PetscScalar *a;
24750716a85fSBarry Smith 
24760716a85fSBarry Smith   PetscFunctionBegin;
24770716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2478580bdb30SBarry Smith   ierr = PetscArrayzero(norms,n);CHKERRQ(ierr);
24791683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
24800716a85fSBarry Smith   if (type == NORM_2) {
24810716a85fSBarry Smith     for (i=0; i<n; i++) {
24820716a85fSBarry Smith       for (j=0; j<m; j++) {
24830716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
24840716a85fSBarry Smith       }
24850716a85fSBarry Smith       a += m;
24860716a85fSBarry Smith     }
24870716a85fSBarry Smith   } else if (type == NORM_1) {
24880716a85fSBarry Smith     for (i=0; i<n; i++) {
24890716a85fSBarry Smith       for (j=0; j<m; j++) {
24900716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
24910716a85fSBarry Smith       }
24920716a85fSBarry Smith       a += m;
24930716a85fSBarry Smith     }
24940716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
24950716a85fSBarry Smith     for (i=0; i<n; i++) {
24960716a85fSBarry Smith       for (j=0; j<m; j++) {
24970716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
24980716a85fSBarry Smith       }
24990716a85fSBarry Smith       a += m;
25000716a85fSBarry Smith     }
2501ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
25021683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr);
25030716a85fSBarry Smith   if (type == NORM_2) {
25048f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
25050716a85fSBarry Smith   }
25060716a85fSBarry Smith   PetscFunctionReturn(0);
25070716a85fSBarry Smith }
25080716a85fSBarry Smith 
250973a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
251073a71a0fSBarry Smith {
251173a71a0fSBarry Smith   PetscErrorCode ierr;
251273a71a0fSBarry Smith   PetscScalar    *a;
2513637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
251473a71a0fSBarry Smith 
251573a71a0fSBarry Smith   PetscFunctionBegin;
251673a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
2517637a0070SStefano Zampini   ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr);
25188c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
2519637a0070SStefano Zampini   for (j=0; j<n; j++) {
2520637a0070SStefano Zampini     for (i=0; i<m; i++) {
2521637a0070SStefano Zampini       ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr);
2522637a0070SStefano Zampini     }
252373a71a0fSBarry Smith   }
25248c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
252573a71a0fSBarry Smith   PetscFunctionReturn(0);
252673a71a0fSBarry Smith }
252773a71a0fSBarry Smith 
25283b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
25293b49f96aSBarry Smith {
25303b49f96aSBarry Smith   PetscFunctionBegin;
25313b49f96aSBarry Smith   *missing = PETSC_FALSE;
25323b49f96aSBarry Smith   PetscFunctionReturn(0);
25333b49f96aSBarry Smith }
253473a71a0fSBarry Smith 
2535ca15aa20SStefano Zampini /* vals is not const */
2536af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
253786aefd0dSHong Zhang {
2538ca15aa20SStefano Zampini   PetscErrorCode ierr;
253986aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2540ca15aa20SStefano Zampini   PetscScalar    *v;
254186aefd0dSHong Zhang 
254286aefd0dSHong Zhang   PetscFunctionBegin;
254386aefd0dSHong Zhang   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2544ca15aa20SStefano Zampini   ierr  = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2545ca15aa20SStefano Zampini   *vals = v+col*a->lda;
2546ca15aa20SStefano Zampini   ierr  = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
254786aefd0dSHong Zhang   PetscFunctionReturn(0);
254886aefd0dSHong Zhang }
254986aefd0dSHong Zhang 
2550af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
255186aefd0dSHong Zhang {
255286aefd0dSHong Zhang   PetscFunctionBegin;
255386aefd0dSHong Zhang   *vals = 0; /* user cannot accidently use the array later */
255486aefd0dSHong Zhang   PetscFunctionReturn(0);
255586aefd0dSHong Zhang }
2556abc3b08eSStefano Zampini 
2557289bc588SBarry Smith /* -------------------------------------------------------------------*/
2558a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2559905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2560905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2561905e6a2fSBarry Smith                                         MatMult_SeqDense,
256297304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
25637c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
25647c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2565db4efbfdSBarry Smith                                         0,
2566db4efbfdSBarry Smith                                         0,
2567db4efbfdSBarry Smith                                         0,
2568db4efbfdSBarry Smith                                 /* 10*/ 0,
2569905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2570905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
257141f059aeSBarry Smith                                         MatSOR_SeqDense,
2572ec8511deSBarry Smith                                         MatTranspose_SeqDense,
257397304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2574905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2575905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2576905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2577905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2578c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2579c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2580905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2581905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2582d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2583db4efbfdSBarry Smith                                         0,
2584db4efbfdSBarry Smith                                         0,
2585db4efbfdSBarry Smith                                         0,
2586db4efbfdSBarry Smith                                         0,
25874994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2588273d9f13SBarry Smith                                         0,
2589905e6a2fSBarry Smith                                         0,
259073a71a0fSBarry Smith                                         0,
259173a71a0fSBarry Smith                                         0,
2592d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2593a5ae1ecdSBarry Smith                                         0,
2594a5ae1ecdSBarry Smith                                         0,
2595a5ae1ecdSBarry Smith                                         0,
2596a5ae1ecdSBarry Smith                                         0,
2597d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
25987dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2599a5ae1ecdSBarry Smith                                         0,
26004b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2601a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2602d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2603a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
26047d68702bSBarry Smith                                         MatShift_Basic,
2605a5ae1ecdSBarry Smith                                         0,
26063f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
260773a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2608a5ae1ecdSBarry Smith                                         0,
2609a5ae1ecdSBarry Smith                                         0,
2610a5ae1ecdSBarry Smith                                         0,
2611a5ae1ecdSBarry Smith                                         0,
2612d519adbfSMatthew Knepley                                 /* 54*/ 0,
2613a5ae1ecdSBarry Smith                                         0,
2614a5ae1ecdSBarry Smith                                         0,
2615a5ae1ecdSBarry Smith                                         0,
2616a5ae1ecdSBarry Smith                                         0,
2617d519adbfSMatthew Knepley                                 /* 59*/ 0,
2618e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2619e03a110bSBarry Smith                                         MatView_SeqDense,
2620357abbc8SBarry Smith                                         0,
262197304618SKris Buschelman                                         0,
2622d519adbfSMatthew Knepley                                 /* 64*/ 0,
262397304618SKris Buschelman                                         0,
262497304618SKris Buschelman                                         0,
262597304618SKris Buschelman                                         0,
262697304618SKris Buschelman                                         0,
2627d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
262897304618SKris Buschelman                                         0,
262997304618SKris Buschelman                                         0,
263097304618SKris Buschelman                                         0,
263197304618SKris Buschelman                                         0,
2632d519adbfSMatthew Knepley                                 /* 74*/ 0,
263397304618SKris Buschelman                                         0,
263497304618SKris Buschelman                                         0,
263597304618SKris Buschelman                                         0,
263697304618SKris Buschelman                                         0,
2637d519adbfSMatthew Knepley                                 /* 79*/ 0,
263897304618SKris Buschelman                                         0,
263997304618SKris Buschelman                                         0,
264097304618SKris Buschelman                                         0,
26415bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2642637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
26431cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2644865e5f61SKris Buschelman                                         0,
2645865e5f61SKris Buschelman                                         0,
2646865e5f61SKris Buschelman                                         0,
26474222ddf1SHong Zhang                                 /* 89*/ 0,
26484222ddf1SHong Zhang                                         0,
2649a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
26504222ddf1SHong Zhang                                         0,
26514222ddf1SHong Zhang                                         0,
26524222ddf1SHong Zhang                                 /* 94*/ 0,
26534222ddf1SHong Zhang                                         0,
26544222ddf1SHong Zhang                                         0,
265569f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2656284134d9SBarry Smith                                         0,
26574222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2658284134d9SBarry Smith                                         0,
2659284134d9SBarry Smith                                         0,
2660ba337c44SJed Brown                                         MatConjugate_SeqDense,
2661f73d5cc4SBarry Smith                                         0,
2662ba337c44SJed Brown                                 /*104*/ 0,
2663ba337c44SJed Brown                                         MatRealPart_SeqDense,
2664ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
2665985db425SBarry Smith                                         0,
2666985db425SBarry Smith                                         0,
26678208b9aeSStefano Zampini                                 /*109*/ 0,
2668985db425SBarry Smith                                         0,
26698d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
2670aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
26713b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
2672aabbc4fbSShri Abhyankar                                 /*114*/ 0,
2673aabbc4fbSShri Abhyankar                                         0,
2674aabbc4fbSShri Abhyankar                                         0,
2675aabbc4fbSShri Abhyankar                                         0,
2676aabbc4fbSShri Abhyankar                                         0,
2677aabbc4fbSShri Abhyankar                                 /*119*/ 0,
2678aabbc4fbSShri Abhyankar                                         0,
2679aabbc4fbSShri Abhyankar                                         0,
26800716a85fSBarry Smith                                         0,
26810716a85fSBarry Smith                                         0,
26820716a85fSBarry Smith                                 /*124*/ 0,
26835df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
26845df89d91SHong Zhang                                         0,
26855df89d91SHong Zhang                                         0,
26865df89d91SHong Zhang                                         0,
26875df89d91SHong Zhang                                 /*129*/ 0,
26884222ddf1SHong Zhang                                         0,
26894222ddf1SHong Zhang                                         0,
269075648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
26913964eb88SJed Brown                                         0,
26923964eb88SJed Brown                                 /*134*/ 0,
26933964eb88SJed Brown                                         0,
26943964eb88SJed Brown                                         0,
26953964eb88SJed Brown                                         0,
26963964eb88SJed Brown                                         0,
26973964eb88SJed Brown                                 /*139*/ 0,
2698f9426fe0SMark Adams                                         0,
2699d528f656SJakub Kruzik                                         0,
2700d528f656SJakub Kruzik                                         0,
2701d528f656SJakub Kruzik                                         0,
27024222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
27034222ddf1SHong Zhang                                 /*145*/ 0,
27044222ddf1SHong Zhang                                         0,
27054222ddf1SHong Zhang                                         0
2706985db425SBarry Smith };
270790ace30eSBarry Smith 
27084b828684SBarry Smith /*@C
2709fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
2710d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
2711d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
2712289bc588SBarry Smith 
2713d083f849SBarry Smith    Collective
2714db81eaa0SLois Curfman McInnes 
271520563c6bSBarry Smith    Input Parameters:
2716db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
27170c775827SLois Curfman McInnes .  m - number of rows
271818f449edSLois Curfman McInnes .  n - number of columns
27190298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
2720dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
272120563c6bSBarry Smith 
272220563c6bSBarry Smith    Output Parameter:
272344cd7ae7SLois Curfman McInnes .  A - the matrix
272420563c6bSBarry Smith 
2725b259b22eSLois Curfman McInnes    Notes:
272618f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
272718f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
27280298fd71SBarry Smith    set data=NULL.
272918f449edSLois Curfman McInnes 
2730027ccd11SLois Curfman McInnes    Level: intermediate
2731027ccd11SLois Curfman McInnes 
273269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
273320563c6bSBarry Smith @*/
27347087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
2735289bc588SBarry Smith {
2736dfbe8321SBarry Smith   PetscErrorCode ierr;
27373b2fbd54SBarry Smith 
27383a40ed3dSBarry Smith   PetscFunctionBegin;
2739f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2740f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2741273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2742273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
2743273d9f13SBarry Smith   PetscFunctionReturn(0);
2744273d9f13SBarry Smith }
2745273d9f13SBarry Smith 
2746273d9f13SBarry Smith /*@C
2747273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
2748273d9f13SBarry Smith 
2749d083f849SBarry Smith    Collective
2750273d9f13SBarry Smith 
2751273d9f13SBarry Smith    Input Parameters:
27521c4f3114SJed Brown +  B - the matrix
27530298fd71SBarry Smith -  data - the array (or NULL)
2754273d9f13SBarry Smith 
2755273d9f13SBarry Smith    Notes:
2756273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
2757273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
2758284134d9SBarry Smith    need not call this routine.
2759273d9f13SBarry Smith 
2760273d9f13SBarry Smith    Level: intermediate
2761273d9f13SBarry Smith 
2762*ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
2763867c911aSBarry Smith 
2764273d9f13SBarry Smith @*/
27657087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
2766273d9f13SBarry Smith {
27674ac538c5SBarry Smith   PetscErrorCode ierr;
2768a23d5eceSKris Buschelman 
2769a23d5eceSKris Buschelman   PetscFunctionBegin;
2770d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
27714ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
2772a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2773a23d5eceSKris Buschelman }
2774a23d5eceSKris Buschelman 
27757087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
2776a23d5eceSKris Buschelman {
2777*ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
2778dfbe8321SBarry Smith   PetscErrorCode ierr;
2779273d9f13SBarry Smith 
2780273d9f13SBarry Smith   PetscFunctionBegin;
2781273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2782a868139aSShri Abhyankar 
278334ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
278434ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
278534ef9618SShri Abhyankar 
2786*ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
278786d161a7SShri Abhyankar 
2788*ad16ce7aSStefano Zampini   ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr);
27899e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
27909e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2791*ad16ce7aSStefano Zampini     ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr);
2792*ad16ce7aSStefano Zampini     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
27932205254eSKarl Rupp 
27949e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
2795273d9f13SBarry Smith   } else { /* user-allocated storage */
27969e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2797273d9f13SBarry Smith     b->v          = data;
2798273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
2799273d9f13SBarry Smith   }
28000450473dSBarry Smith   B->assembled = PETSC_TRUE;
2801273d9f13SBarry Smith   PetscFunctionReturn(0);
2802273d9f13SBarry Smith }
2803273d9f13SBarry Smith 
280465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2805cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
28068baccfbdSHong Zhang {
2807d77f618aSHong Zhang   Mat               mat_elemental;
2808d77f618aSHong Zhang   PetscErrorCode    ierr;
28091683a169SBarry Smith   const PetscScalar *array;
28101683a169SBarry Smith   PetscScalar       *v_colwise;
2811d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
2812d77f618aSHong Zhang 
28138baccfbdSHong Zhang   PetscFunctionBegin;
2814d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
28151683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr);
2816d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
2817d77f618aSHong Zhang   k = 0;
2818d77f618aSHong Zhang   for (j=0; j<N; j++) {
2819d77f618aSHong Zhang     cols[j] = j;
2820d77f618aSHong Zhang     for (i=0; i<M; i++) {
2821d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
2822d77f618aSHong Zhang     }
2823d77f618aSHong Zhang   }
2824d77f618aSHong Zhang   for (i=0; i<M; i++) {
2825d77f618aSHong Zhang     rows[i] = i;
2826d77f618aSHong Zhang   }
28271683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr);
2828d77f618aSHong Zhang 
2829d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
2830d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
2831d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
2832d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
2833d77f618aSHong Zhang 
2834d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
2835d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
2836d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2837d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2838d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
2839d77f618aSHong Zhang 
2840511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
284128be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
2842d77f618aSHong Zhang   } else {
2843d77f618aSHong Zhang     *newmat = mat_elemental;
2844d77f618aSHong Zhang   }
28458baccfbdSHong Zhang   PetscFunctionReturn(0);
28468baccfbdSHong Zhang }
284765b80a83SHong Zhang #endif
28488baccfbdSHong Zhang 
2849*ad16ce7aSStefano Zampini static PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
28501b807ce4Svictorle {
28511b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
285221a2c019SBarry Smith 
28531b807ce4Svictorle   PetscFunctionBegin;
2854e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
28551b807ce4Svictorle   b->lda = lda;
28561b807ce4Svictorle   PetscFunctionReturn(0);
28571b807ce4Svictorle }
28581b807ce4Svictorle 
2859d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
2860d528f656SJakub Kruzik {
2861d528f656SJakub Kruzik   PetscErrorCode ierr;
2862d528f656SJakub Kruzik   PetscMPIInt    size;
2863d528f656SJakub Kruzik 
2864d528f656SJakub Kruzik   PetscFunctionBegin;
2865d528f656SJakub Kruzik   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2866d528f656SJakub Kruzik   if (size == 1) {
2867d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
2868d528f656SJakub Kruzik       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
2869d528f656SJakub Kruzik     } else {
2870d528f656SJakub Kruzik       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
2871d528f656SJakub Kruzik     }
2872d528f656SJakub Kruzik   } else {
2873d528f656SJakub Kruzik     ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
2874d528f656SJakub Kruzik   }
2875d528f656SJakub Kruzik   PetscFunctionReturn(0);
2876d528f656SJakub Kruzik }
2877d528f656SJakub Kruzik 
28786947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
28796947451fSStefano Zampini {
28806947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28816947451fSStefano Zampini   PetscErrorCode ierr;
28826947451fSStefano Zampini 
28836947451fSStefano Zampini   PetscFunctionBegin;
28846947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
28856947451fSStefano Zampini   if (!a->cvec) {
28866947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
28876947451fSStefano Zampini   }
28886947451fSStefano Zampini   a->vecinuse = col + 1;
28896947451fSStefano Zampini   ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
28906947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
28916947451fSStefano Zampini   *v   = a->cvec;
28926947451fSStefano Zampini   PetscFunctionReturn(0);
28936947451fSStefano Zampini }
28946947451fSStefano Zampini 
28956947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
28966947451fSStefano Zampini {
28976947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
28986947451fSStefano Zampini   PetscErrorCode ierr;
28996947451fSStefano Zampini 
29006947451fSStefano Zampini   PetscFunctionBegin;
29016947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
29026947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
29036947451fSStefano Zampini   a->vecinuse = 0;
29046947451fSStefano Zampini   ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
29056947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
29066947451fSStefano Zampini   *v   = NULL;
29076947451fSStefano Zampini   PetscFunctionReturn(0);
29086947451fSStefano Zampini }
29096947451fSStefano Zampini 
29106947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
29116947451fSStefano Zampini {
29126947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29136947451fSStefano Zampini   PetscErrorCode ierr;
29146947451fSStefano Zampini 
29156947451fSStefano Zampini   PetscFunctionBegin;
29166947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
29176947451fSStefano Zampini   if (!a->cvec) {
29186947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
29196947451fSStefano Zampini   }
29206947451fSStefano Zampini   a->vecinuse = col + 1;
29216947451fSStefano Zampini   ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
29226947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
29236947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
29246947451fSStefano Zampini   *v   = a->cvec;
29256947451fSStefano Zampini   PetscFunctionReturn(0);
29266947451fSStefano Zampini }
29276947451fSStefano Zampini 
29286947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
29296947451fSStefano Zampini {
29306947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29316947451fSStefano Zampini   PetscErrorCode ierr;
29326947451fSStefano Zampini 
29336947451fSStefano Zampini   PetscFunctionBegin;
29346947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
29356947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
29366947451fSStefano Zampini   a->vecinuse = 0;
29376947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
29386947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
29396947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
29406947451fSStefano Zampini   *v   = NULL;
29416947451fSStefano Zampini   PetscFunctionReturn(0);
29426947451fSStefano Zampini }
29436947451fSStefano Zampini 
29446947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
29456947451fSStefano Zampini {
29466947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29476947451fSStefano Zampini   PetscErrorCode ierr;
29486947451fSStefano Zampini 
29496947451fSStefano Zampini   PetscFunctionBegin;
29506947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
29516947451fSStefano Zampini   if (!a->cvec) {
29526947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
29536947451fSStefano Zampini   }
29546947451fSStefano Zampini   a->vecinuse = col + 1;
29556947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
29566947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
29576947451fSStefano Zampini   *v   = a->cvec;
29586947451fSStefano Zampini   PetscFunctionReturn(0);
29596947451fSStefano Zampini }
29606947451fSStefano Zampini 
29616947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
29626947451fSStefano Zampini {
29636947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
29646947451fSStefano Zampini   PetscErrorCode ierr;
29656947451fSStefano Zampini 
29666947451fSStefano Zampini   PetscFunctionBegin;
29676947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
29686947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
29696947451fSStefano Zampini   a->vecinuse = 0;
29706947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
29716947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
29726947451fSStefano Zampini   *v   = NULL;
29736947451fSStefano Zampini   PetscFunctionReturn(0);
29746947451fSStefano Zampini }
29756947451fSStefano Zampini 
29760bad9183SKris Buschelman /*MC
2977fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
29780bad9183SKris Buschelman 
29790bad9183SKris Buschelman    Options Database Keys:
29800bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
29810bad9183SKris Buschelman 
29820bad9183SKris Buschelman   Level: beginner
29830bad9183SKris Buschelman 
298489665df3SBarry Smith .seealso: MatCreateSeqDense()
298589665df3SBarry Smith 
29860bad9183SKris Buschelman M*/
2987ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
2988273d9f13SBarry Smith {
2989273d9f13SBarry Smith   Mat_SeqDense   *b;
2990dfbe8321SBarry Smith   PetscErrorCode ierr;
29917c334f02SBarry Smith   PetscMPIInt    size;
2992273d9f13SBarry Smith 
2993273d9f13SBarry Smith   PetscFunctionBegin;
2994ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2995e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
299655659b69SBarry Smith 
2997b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2998549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
299944cd7ae7SLois Curfman McInnes   B->data = (void*)b;
300018f449edSLois Curfman McInnes 
3001273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
30024e220ebcSLois Curfman McInnes 
300349a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr);
3004*ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr);
3005bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
30068572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3007d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
3008d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
3009d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr);
30108572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
3011715b7558SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
30126947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
30136947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3014bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
30158baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
30168baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
30178baccfbdSHong Zhang #endif
30182bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
30192bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr);
30204222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
30214222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
3022637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
30234222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaijcusparse_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
30242bf066beSStefano Zampini #endif
3025bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
30264222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
30274222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
3028bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
3029bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
30304222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
3031a001520aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqbaij_seqdense_C",MatMatMultSymbolic_SeqBAIJ_SeqDense);CHKERRQ(ierr);
3032a001520aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqbaij_seqdense_C",MatMatMultNumeric_SeqBAIJ_SeqDense);CHKERRQ(ierr);
30334222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
3034c2916339SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqsbaij_seqdense_C",MatMatMultSymbolic_SeqSBAIJ_SeqDense);CHKERRQ(ierr);
3035c2916339SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqsbaij_seqdense_C",MatMatMultNumeric_SeqSBAIJ_SeqDense);CHKERRQ(ierr);
30364099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijperm_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
30374099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijperm_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
3038e9e4f4a6SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijsell_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
3039e9e4f4a6SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijsell_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
304096e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijmkl_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
304196e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijmkl_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
304252c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_nest_seqdense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr);
304352c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_nest_seqdense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr);
304496e6d5c4SRichard Tran Mills 
30453bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
30463bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaij_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
30474099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijperm_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
30484099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijperm_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
3049e9e4f4a6SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijsell_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
3050e9e4f4a6SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijsell_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
305196e6d5c4SRichard Tran Mills 
305296e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijmkl_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
305396e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijmkl_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
3054af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr);
3055af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr);
30566947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr);
30576947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr);
30586947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr);
30596947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr);
30606947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr);
30616947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr);
306217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
30633a40ed3dSBarry Smith   PetscFunctionReturn(0);
3064289bc588SBarry Smith }
306586aefd0dSHong Zhang 
306686aefd0dSHong Zhang /*@C
3067af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
306886aefd0dSHong Zhang 
306986aefd0dSHong Zhang    Not Collective
307086aefd0dSHong Zhang 
307186aefd0dSHong Zhang    Input Parameter:
307286aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
307386aefd0dSHong Zhang -  col - column index
307486aefd0dSHong Zhang 
307586aefd0dSHong Zhang    Output Parameter:
307686aefd0dSHong Zhang .  vals - pointer to the data
307786aefd0dSHong Zhang 
307886aefd0dSHong Zhang    Level: intermediate
307986aefd0dSHong Zhang 
308086aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
308186aefd0dSHong Zhang @*/
308286aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
308386aefd0dSHong Zhang {
308486aefd0dSHong Zhang   PetscErrorCode ierr;
308586aefd0dSHong Zhang 
308686aefd0dSHong Zhang   PetscFunctionBegin;
3087d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3088d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3089d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
309086aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr);
309186aefd0dSHong Zhang   PetscFunctionReturn(0);
309286aefd0dSHong Zhang }
309386aefd0dSHong Zhang 
309486aefd0dSHong Zhang /*@C
309586aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
309686aefd0dSHong Zhang 
309786aefd0dSHong Zhang    Not Collective
309886aefd0dSHong Zhang 
309986aefd0dSHong Zhang    Input Parameter:
310086aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
310186aefd0dSHong Zhang 
310286aefd0dSHong Zhang    Output Parameter:
310386aefd0dSHong Zhang .  vals - pointer to the data
310486aefd0dSHong Zhang 
310586aefd0dSHong Zhang    Level: intermediate
310686aefd0dSHong Zhang 
310786aefd0dSHong Zhang .seealso: MatDenseGetColumn()
310886aefd0dSHong Zhang @*/
310986aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
311086aefd0dSHong Zhang {
311186aefd0dSHong Zhang   PetscErrorCode ierr;
311286aefd0dSHong Zhang 
311386aefd0dSHong Zhang   PetscFunctionBegin;
3114d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3115d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
311686aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr);
311786aefd0dSHong Zhang   PetscFunctionReturn(0);
311886aefd0dSHong Zhang }
31196947451fSStefano Zampini 
31206947451fSStefano Zampini /*@C
31216947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
31226947451fSStefano Zampini 
31236947451fSStefano Zampini    Collective
31246947451fSStefano Zampini 
31256947451fSStefano Zampini    Input Parameter:
31266947451fSStefano Zampini +  mat - the Mat object
31276947451fSStefano Zampini -  col - the column index
31286947451fSStefano Zampini 
31296947451fSStefano Zampini    Output Parameter:
31306947451fSStefano Zampini .  v - the vector
31316947451fSStefano Zampini 
31326947451fSStefano Zampini    Notes:
31336947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
31346947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
31356947451fSStefano Zampini 
31366947451fSStefano Zampini    Level: intermediate
31376947451fSStefano Zampini 
31386947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
31396947451fSStefano Zampini @*/
31406947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
31416947451fSStefano Zampini {
31426947451fSStefano Zampini   PetscErrorCode ierr;
31436947451fSStefano Zampini 
31446947451fSStefano Zampini   PetscFunctionBegin;
31456947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
31466947451fSStefano Zampini   PetscValidType(A,1);
31476947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
31486947451fSStefano Zampini   PetscValidPointer(v,3);
31496947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
31506947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
31516947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
31526947451fSStefano Zampini   PetscFunctionReturn(0);
31536947451fSStefano Zampini }
31546947451fSStefano Zampini 
31556947451fSStefano Zampini /*@C
31566947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
31576947451fSStefano Zampini 
31586947451fSStefano Zampini    Collective
31596947451fSStefano Zampini 
31606947451fSStefano Zampini    Input Parameter:
31616947451fSStefano Zampini +  mat - the Mat object
31626947451fSStefano Zampini .  col - the column index
31636947451fSStefano Zampini -  v - the Vec object
31646947451fSStefano Zampini 
31656947451fSStefano Zampini    Level: intermediate
31666947451fSStefano Zampini 
31676947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
31686947451fSStefano Zampini @*/
31696947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
31706947451fSStefano Zampini {
31716947451fSStefano Zampini   PetscErrorCode ierr;
31726947451fSStefano Zampini 
31736947451fSStefano Zampini   PetscFunctionBegin;
31746947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
31756947451fSStefano Zampini   PetscValidType(A,1);
31766947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
31776947451fSStefano Zampini   PetscValidPointer(v,3);
31786947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
31796947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
31806947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
31816947451fSStefano Zampini   PetscFunctionReturn(0);
31826947451fSStefano Zampini }
31836947451fSStefano Zampini 
31846947451fSStefano Zampini /*@C
31856947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
31866947451fSStefano Zampini 
31876947451fSStefano Zampini    Collective
31886947451fSStefano Zampini 
31896947451fSStefano Zampini    Input Parameter:
31906947451fSStefano Zampini +  mat - the Mat object
31916947451fSStefano Zampini -  col - the column index
31926947451fSStefano Zampini 
31936947451fSStefano Zampini    Output Parameter:
31946947451fSStefano Zampini .  v - the vector
31956947451fSStefano Zampini 
31966947451fSStefano Zampini    Notes:
31976947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
31986947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
31996947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
32006947451fSStefano Zampini 
32016947451fSStefano Zampini    Level: intermediate
32026947451fSStefano Zampini 
32036947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
32046947451fSStefano Zampini @*/
32056947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
32066947451fSStefano Zampini {
32076947451fSStefano Zampini   PetscErrorCode ierr;
32086947451fSStefano Zampini 
32096947451fSStefano Zampini   PetscFunctionBegin;
32106947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32116947451fSStefano Zampini   PetscValidType(A,1);
32126947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
32136947451fSStefano Zampini   PetscValidPointer(v,3);
32146947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
32156947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
32166947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
32176947451fSStefano Zampini   PetscFunctionReturn(0);
32186947451fSStefano Zampini }
32196947451fSStefano Zampini 
32206947451fSStefano Zampini /*@C
32216947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
32226947451fSStefano Zampini 
32236947451fSStefano Zampini    Collective
32246947451fSStefano Zampini 
32256947451fSStefano Zampini    Input Parameter:
32266947451fSStefano Zampini +  mat - the Mat object
32276947451fSStefano Zampini .  col - the column index
32286947451fSStefano Zampini -  v - the Vec object
32296947451fSStefano Zampini 
32306947451fSStefano Zampini    Level: intermediate
32316947451fSStefano Zampini 
32326947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
32336947451fSStefano Zampini @*/
32346947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
32356947451fSStefano Zampini {
32366947451fSStefano Zampini   PetscErrorCode ierr;
32376947451fSStefano Zampini 
32386947451fSStefano Zampini   PetscFunctionBegin;
32396947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32406947451fSStefano Zampini   PetscValidType(A,1);
32416947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
32426947451fSStefano Zampini   PetscValidPointer(v,3);
32436947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
32446947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
32456947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
32466947451fSStefano Zampini   PetscFunctionReturn(0);
32476947451fSStefano Zampini }
32486947451fSStefano Zampini 
32496947451fSStefano Zampini /*@C
32506947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
32516947451fSStefano Zampini 
32526947451fSStefano Zampini    Collective
32536947451fSStefano Zampini 
32546947451fSStefano Zampini    Input Parameter:
32556947451fSStefano Zampini +  mat - the Mat object
32566947451fSStefano Zampini -  col - the column index
32576947451fSStefano Zampini 
32586947451fSStefano Zampini    Output Parameter:
32596947451fSStefano Zampini .  v - the vector
32606947451fSStefano Zampini 
32616947451fSStefano Zampini    Notes:
32626947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
32636947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
32646947451fSStefano Zampini 
32656947451fSStefano Zampini    Level: intermediate
32666947451fSStefano Zampini 
32676947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
32686947451fSStefano Zampini @*/
32696947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
32706947451fSStefano Zampini {
32716947451fSStefano Zampini   PetscErrorCode ierr;
32726947451fSStefano Zampini 
32736947451fSStefano Zampini   PetscFunctionBegin;
32746947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32756947451fSStefano Zampini   PetscValidType(A,1);
32766947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
32776947451fSStefano Zampini   PetscValidPointer(v,3);
32786947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
32796947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
32806947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
32816947451fSStefano Zampini   PetscFunctionReturn(0);
32826947451fSStefano Zampini }
32836947451fSStefano Zampini 
32846947451fSStefano Zampini /*@C
32856947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
32866947451fSStefano Zampini 
32876947451fSStefano Zampini    Collective
32886947451fSStefano Zampini 
32896947451fSStefano Zampini    Input Parameter:
32906947451fSStefano Zampini +  mat - the Mat object
32916947451fSStefano Zampini .  col - the column index
32926947451fSStefano Zampini -  v - the Vec object
32936947451fSStefano Zampini 
32946947451fSStefano Zampini    Level: intermediate
32956947451fSStefano Zampini 
32966947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
32976947451fSStefano Zampini @*/
32986947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
32996947451fSStefano Zampini {
33006947451fSStefano Zampini   PetscErrorCode ierr;
33016947451fSStefano Zampini 
33026947451fSStefano Zampini   PetscFunctionBegin;
33036947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
33046947451fSStefano Zampini   PetscValidType(A,1);
33056947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
33066947451fSStefano Zampini   PetscValidPointer(v,3);
33076947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
33086947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
33096947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
33106947451fSStefano Zampini   PetscFunctionReturn(0);
33116947451fSStefano Zampini }
3312