1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 367e560aaSBarry Smith /* 467e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 770f55243SBarry Smith #include "src/mat/impls/dense/seq/dense.h" 8b4c862e0SSatish Balay #include "petscblaslapack.h" 9289bc588SBarry Smith 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense" 12f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 131987afe7SBarry Smith { 141987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 15f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 1613f74950SBarry Smith PetscInt j; 170805154bSBarry Smith PetscBLASInt N,m,ldax,lday,one = 1; 18efee365bSSatish Balay PetscErrorCode ierr; 193a40ed3dSBarry Smith 203a40ed3dSBarry Smith PetscFunctionBegin; 21d0f46423SBarry Smith N = PetscBLASIntCast(X->rmap->n*X->cmap->n); 22d0f46423SBarry Smith m = PetscBLASIntCast(X->rmap->n); 230805154bSBarry Smith ldax = PetscBLASIntCast(x->lda); 240805154bSBarry Smith lday = PetscBLASIntCast(y->lda); 25a5ce6ee0Svictorle if (ldax>m || lday>m) { 26d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 27f4df32b1SMatthew Knepley BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one); 28a5ce6ee0Svictorle } 29a5ce6ee0Svictorle } else { 30f4df32b1SMatthew Knepley BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one); 31a5ce6ee0Svictorle } 32efee365bSSatish Balay ierr = PetscLogFlops(2*N-1);CHKERRQ(ierr); 333a40ed3dSBarry Smith PetscFunctionReturn(0); 341987afe7SBarry Smith } 351987afe7SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense" 38dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 39289bc588SBarry Smith { 40d0f46423SBarry Smith PetscInt N = A->rmap->n*A->cmap->n; 413a40ed3dSBarry Smith 423a40ed3dSBarry Smith PetscFunctionBegin; 43d0f46423SBarry Smith info->rows_global = (double)A->rmap->n; 44d0f46423SBarry Smith info->columns_global = (double)A->cmap->n; 45d0f46423SBarry Smith info->rows_local = (double)A->rmap->n; 46d0f46423SBarry Smith info->columns_local = (double)A->cmap->n; 474e220ebcSLois Curfman McInnes info->block_size = 1.0; 484e220ebcSLois Curfman McInnes info->nz_allocated = (double)N; 496de62eeeSBarry Smith info->nz_used = (double)N; 506de62eeeSBarry Smith info->nz_unneeded = (double)0; 514e220ebcSLois Curfman McInnes info->assemblies = (double)A->num_ass; 524e220ebcSLois Curfman McInnes info->mallocs = 0; 537adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 544e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 554e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 564e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 573a40ed3dSBarry Smith PetscFunctionReturn(0); 58289bc588SBarry Smith } 59289bc588SBarry Smith 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense" 62f4df32b1SMatthew Knepley PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 6380cd9d93SLois Curfman McInnes { 64273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 65f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 66efee365bSSatish Balay PetscErrorCode ierr; 670805154bSBarry Smith PetscBLASInt one = 1,j,nz,lda = PetscBLASIntCast(a->lda); 6880cd9d93SLois Curfman McInnes 693a40ed3dSBarry Smith PetscFunctionBegin; 70d0f46423SBarry Smith if (lda>A->rmap->n) { 71d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n); 72d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 73f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v+j*lda,&one); 74a5ce6ee0Svictorle } 75a5ce6ee0Svictorle } else { 76d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n*A->cmap->n); 77f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 78a5ce6ee0Svictorle } 79efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 803a40ed3dSBarry Smith PetscFunctionReturn(0); 8180cd9d93SLois Curfman McInnes } 8280cd9d93SLois Curfman McInnes 831cbb95d3SBarry Smith #undef __FUNCT__ 841cbb95d3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqDense" 851cbb95d3SBarry Smith PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscTruth *fl) 861cbb95d3SBarry Smith { 871cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 88d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,N; 891cbb95d3SBarry Smith PetscScalar *v = a->v; 901cbb95d3SBarry Smith 911cbb95d3SBarry Smith PetscFunctionBegin; 921cbb95d3SBarry Smith *fl = PETSC_FALSE; 93d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 941cbb95d3SBarry Smith N = a->lda; 951cbb95d3SBarry Smith 961cbb95d3SBarry Smith for (i=0; i<m; i++) { 971cbb95d3SBarry Smith for (j=i+1; j<m; j++) { 981cbb95d3SBarry Smith if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0); 991cbb95d3SBarry Smith } 1001cbb95d3SBarry Smith } 1011cbb95d3SBarry Smith *fl = PETSC_TRUE; 1021cbb95d3SBarry Smith PetscFunctionReturn(0); 1031cbb95d3SBarry Smith } 1041cbb95d3SBarry Smith 105b24902e0SBarry Smith #undef __FUNCT__ 106b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqDense" 107719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 108b24902e0SBarry Smith { 109b24902e0SBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l; 110b24902e0SBarry Smith PetscErrorCode ierr; 111b24902e0SBarry Smith PetscInt lda = (PetscInt)mat->lda,j,m; 112b24902e0SBarry Smith 113b24902e0SBarry Smith PetscFunctionBegin; 114719d5645SBarry Smith ierr = MatSeqDenseSetPreallocation(newi,PETSC_NULL);CHKERRQ(ierr); 115b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 116b24902e0SBarry Smith l = (Mat_SeqDense*)newi->data; 117d0f46423SBarry Smith if (lda>A->rmap->n) { 118d0f46423SBarry Smith m = A->rmap->n; 119d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 120b24902e0SBarry Smith ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 121b24902e0SBarry Smith } 122b24902e0SBarry Smith } else { 123d0f46423SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 124b24902e0SBarry Smith } 125b24902e0SBarry Smith } 126b24902e0SBarry Smith newi->assembled = PETSC_TRUE; 127b24902e0SBarry Smith PetscFunctionReturn(0); 128b24902e0SBarry Smith } 129b24902e0SBarry Smith 1304a2ae208SSatish Balay #undef __FUNCT__ 1314a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense" 132dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 13302cad45dSBarry Smith { 1346849ba73SBarry Smith PetscErrorCode ierr; 13502cad45dSBarry Smith 1363a40ed3dSBarry Smith PetscFunctionBegin; 1375c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,newmat);CHKERRQ(ierr); 138d0f46423SBarry Smith ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1395c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 140719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr); 141b24902e0SBarry Smith PetscFunctionReturn(0); 142b24902e0SBarry Smith } 143b24902e0SBarry Smith 1446ee01492SSatish Balay 1450481f469SBarry Smith extern PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*); 146719d5645SBarry Smith 1474a2ae208SSatish Balay #undef __FUNCT__ 1484a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense" 1490481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 150289bc588SBarry Smith { 1514482741eSBarry Smith MatFactorInfo info; 152a093e273SMatthew Knepley PetscErrorCode ierr; 1533a40ed3dSBarry Smith 1543a40ed3dSBarry Smith PetscFunctionBegin; 155*c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 156719d5645SBarry Smith ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr); 1573a40ed3dSBarry Smith PetscFunctionReturn(0); 158289bc588SBarry Smith } 1596ee01492SSatish Balay 1600b4b3355SBarry Smith #undef __FUNCT__ 1614a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense" 162dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy) 163289bc588SBarry Smith { 164c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1656849ba73SBarry Smith PetscErrorCode ierr; 16687828ca2SBarry Smith PetscScalar *x,*y; 167d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 16867e560aaSBarry Smith 1693a40ed3dSBarry Smith PetscFunctionBegin; 1701ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1711ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 172d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1735c9eb25fSBarry Smith if (A->factor == MAT_FACTOR_LU) { 174ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 17580444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 176ae7cfcebSSatish Balay #else 17771044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 1784ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve"); 179ae7cfcebSSatish Balay #endif 1805c9eb25fSBarry Smith } else if (A->factor == MAT_FACTOR_CHOLESKY){ 181ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 18280444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 183ae7cfcebSSatish Balay #else 18471044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 1854ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve"); 186ae7cfcebSSatish Balay #endif 187289bc588SBarry Smith } 18829bbc08cSBarry Smith else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 1891ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1901ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 191d0f46423SBarry Smith ierr = PetscLogFlops(2*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 1923a40ed3dSBarry Smith PetscFunctionReturn(0); 193289bc588SBarry Smith } 1946ee01492SSatish Balay 1954a2ae208SSatish Balay #undef __FUNCT__ 1964a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense" 197dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy) 198da3a660dSBarry Smith { 199c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 200dfbe8321SBarry Smith PetscErrorCode ierr; 20187828ca2SBarry Smith PetscScalar *x,*y; 202d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 20367e560aaSBarry Smith 2043a40ed3dSBarry Smith PetscFunctionBegin; 2051ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2061ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 207d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 208752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 209da3a660dSBarry Smith if (mat->pivots) { 210ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 21180444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 212ae7cfcebSSatish Balay #else 21371044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2144ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 215ae7cfcebSSatish Balay #endif 2167a97a34bSBarry Smith } else { 217ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 21880444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 219ae7cfcebSSatish Balay #else 22071044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2214ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 222ae7cfcebSSatish Balay #endif 223da3a660dSBarry Smith } 2241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2251ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 226d0f46423SBarry Smith ierr = PetscLogFlops(2*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 2273a40ed3dSBarry Smith PetscFunctionReturn(0); 228da3a660dSBarry Smith } 2296ee01492SSatish Balay 2304a2ae208SSatish Balay #undef __FUNCT__ 2314a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense" 232dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 233da3a660dSBarry Smith { 234c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 235dfbe8321SBarry Smith PetscErrorCode ierr; 23687828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 237da3a660dSBarry Smith Vec tmp = 0; 238d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 23967e560aaSBarry Smith 2403a40ed3dSBarry Smith PetscFunctionBegin; 2411ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2421ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 243d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 244da3a660dSBarry Smith if (yy == zz) { 24578b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 24652e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 24778b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 248da3a660dSBarry Smith } 249d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 250752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 251da3a660dSBarry Smith if (mat->pivots) { 252ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 25380444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 254ae7cfcebSSatish Balay #else 25571044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2562ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 257ae7cfcebSSatish Balay #endif 258a8c6a408SBarry Smith } else { 259ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 26080444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 261ae7cfcebSSatish Balay #else 26271044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2632ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 264ae7cfcebSSatish Balay #endif 265da3a660dSBarry Smith } 2662dcb1b2aSMatthew Knepley if (tmp) {ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);} 2672dcb1b2aSMatthew Knepley else {ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);} 2681ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2691ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 270d0f46423SBarry Smith ierr = PetscLogFlops(2*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 272da3a660dSBarry Smith } 27367e560aaSBarry Smith 2744a2ae208SSatish Balay #undef __FUNCT__ 2754a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense" 276dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 277da3a660dSBarry Smith { 278c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2796849ba73SBarry Smith PetscErrorCode ierr; 28087828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 281da3a660dSBarry Smith Vec tmp; 282d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 28367e560aaSBarry Smith 2843a40ed3dSBarry Smith PetscFunctionBegin; 285d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 2861ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2871ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 288da3a660dSBarry Smith if (yy == zz) { 28978b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 29052e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 29178b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 292da3a660dSBarry Smith } 293d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 294752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 295da3a660dSBarry Smith if (mat->pivots) { 296ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 29780444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 298ae7cfcebSSatish Balay #else 29971044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 3002ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 301ae7cfcebSSatish Balay #endif 3023a40ed3dSBarry Smith } else { 303ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 30480444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 305ae7cfcebSSatish Balay #else 30671044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3072ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 308ae7cfcebSSatish Balay #endif 309da3a660dSBarry Smith } 31090f02eecSBarry Smith if (tmp) { 3112dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 31290f02eecSBarry Smith ierr = VecDestroy(tmp);CHKERRQ(ierr); 3133a40ed3dSBarry Smith } else { 3142dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 31590f02eecSBarry Smith } 3161ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3171ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 318d0f46423SBarry Smith ierr = PetscLogFlops(2*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 3193a40ed3dSBarry Smith PetscFunctionReturn(0); 320da3a660dSBarry Smith } 321db4efbfdSBarry Smith 322db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 323db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 324db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 325db4efbfdSBarry Smith #undef __FUNCT__ 326db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactor_SeqDense" 3270481f469SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 328db4efbfdSBarry Smith { 329db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF) 330db4efbfdSBarry Smith PetscFunctionBegin; 331db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable."); 332db4efbfdSBarry Smith #else 333db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 334db4efbfdSBarry Smith PetscErrorCode ierr; 335db4efbfdSBarry Smith PetscBLASInt n,m,info; 336db4efbfdSBarry Smith 337db4efbfdSBarry Smith PetscFunctionBegin; 338db4efbfdSBarry Smith n = PetscBLASIntCast(A->cmap->n); 339db4efbfdSBarry Smith m = PetscBLASIntCast(A->rmap->n); 340db4efbfdSBarry Smith if (!mat->pivots) { 341db4efbfdSBarry Smith ierr = PetscMalloc((A->rmap->n+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr); 342db4efbfdSBarry Smith ierr = PetscLogObjectMemory(A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 343db4efbfdSBarry Smith } 344db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 345db4efbfdSBarry Smith LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info); 346db4efbfdSBarry Smith if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization"); 347db4efbfdSBarry Smith if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 348db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 349db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 350db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 351db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 352db4efbfdSBarry Smith A->factor = MAT_FACTOR_LU; 353db4efbfdSBarry Smith 354db4efbfdSBarry Smith ierr = PetscLogFlops((2*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 355db4efbfdSBarry Smith #endif 356db4efbfdSBarry Smith PetscFunctionReturn(0); 357db4efbfdSBarry Smith } 358db4efbfdSBarry Smith 359db4efbfdSBarry Smith #undef __FUNCT__ 360db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactor_SeqDense" 3610481f469SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 362db4efbfdSBarry Smith { 363db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF) 364db4efbfdSBarry Smith PetscFunctionBegin; 365db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 366db4efbfdSBarry Smith #else 367db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 368db4efbfdSBarry Smith PetscErrorCode ierr; 369db4efbfdSBarry Smith PetscBLASInt info,n = PetscBLASIntCast(A->cmap->n); 370db4efbfdSBarry Smith 371db4efbfdSBarry Smith PetscFunctionBegin; 372db4efbfdSBarry Smith ierr = PetscFree(mat->pivots);CHKERRQ(ierr); 373db4efbfdSBarry Smith mat->pivots = 0; 374db4efbfdSBarry Smith 375db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 376db4efbfdSBarry Smith LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info); 377db4efbfdSBarry Smith if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 378db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 379db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 380db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 381db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 382db4efbfdSBarry Smith A->factor = MAT_FACTOR_CHOLESKY; 383db4efbfdSBarry Smith ierr = PetscLogFlops((A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 384db4efbfdSBarry Smith #endif 385db4efbfdSBarry Smith PetscFunctionReturn(0); 386db4efbfdSBarry Smith } 387db4efbfdSBarry Smith 388db4efbfdSBarry Smith 389db4efbfdSBarry Smith #undef __FUNCT__ 390db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense" 3910481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 392db4efbfdSBarry Smith { 393db4efbfdSBarry Smith PetscErrorCode ierr; 394db4efbfdSBarry Smith MatFactorInfo info; 395db4efbfdSBarry Smith 396db4efbfdSBarry Smith PetscFunctionBegin; 397db4efbfdSBarry Smith info.fill = 1.0; 398*c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 399719d5645SBarry Smith ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr); 400db4efbfdSBarry Smith PetscFunctionReturn(0); 401db4efbfdSBarry Smith } 402db4efbfdSBarry Smith 403db4efbfdSBarry Smith #undef __FUNCT__ 404db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense" 4050481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 406db4efbfdSBarry Smith { 407db4efbfdSBarry Smith PetscFunctionBegin; 408*c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 409719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 410db4efbfdSBarry Smith PetscFunctionReturn(0); 411db4efbfdSBarry Smith } 412db4efbfdSBarry Smith 413db4efbfdSBarry Smith #undef __FUNCT__ 414db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_SeqDense" 4150481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 416db4efbfdSBarry Smith { 417db4efbfdSBarry Smith PetscFunctionBegin; 418*c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 419719d5645SBarry Smith fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 420db4efbfdSBarry Smith PetscFunctionReturn(0); 421db4efbfdSBarry Smith } 422db4efbfdSBarry Smith 423db4efbfdSBarry Smith #undef __FUNCT__ 424db4efbfdSBarry Smith #define __FUNCT__ "MatGetFactor_seqdense_petsc" 425db4efbfdSBarry Smith PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 426db4efbfdSBarry Smith { 427db4efbfdSBarry Smith PetscErrorCode ierr; 428db4efbfdSBarry Smith 429db4efbfdSBarry Smith PetscFunctionBegin; 430db4efbfdSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,fact);CHKERRQ(ierr); 431db4efbfdSBarry Smith ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 432db4efbfdSBarry Smith ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr); 433db4efbfdSBarry Smith if (ftype == MAT_FACTOR_LU){ 434db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 435db4efbfdSBarry Smith } else { 436db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 437db4efbfdSBarry Smith } 438db4efbfdSBarry Smith (*fact)->factor = ftype; 439db4efbfdSBarry Smith PetscFunctionReturn(0); 440db4efbfdSBarry Smith } 441db4efbfdSBarry Smith 442289bc588SBarry Smith /* ------------------------------------------------------------------*/ 4434a2ae208SSatish Balay #undef __FUNCT__ 4444a2ae208SSatish Balay #define __FUNCT__ "MatRelax_SeqDense" 44513f74950SBarry Smith PetscErrorCode MatRelax_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 446289bc588SBarry Smith { 447c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 44887828ca2SBarry Smith PetscScalar *x,*b,*v = mat->v,zero = 0.0,xt; 449dfbe8321SBarry Smith PetscErrorCode ierr; 450d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 451aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX) 4520805154bSBarry Smith PetscBLASInt o = 1,bm = PetscBLASIntCast(m); 453bc1b551cSSatish Balay #endif 454289bc588SBarry Smith 4553a40ed3dSBarry Smith PetscFunctionBegin; 456289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 45771044d3cSBarry Smith /* this is a hack fix, should have another version without the second BLASdot */ 4582dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 459289bc588SBarry Smith } 4601ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4611ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 462b965ef7fSBarry Smith its = its*lits; 46377431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 464289bc588SBarry Smith while (its--) { 465fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 466289bc588SBarry Smith for (i=0; i<m; i++) { 467aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 468f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 469f1747703SBarry Smith not happy about returning a double complex */ 47013f74950SBarry Smith PetscInt _i; 47187828ca2SBarry Smith PetscScalar sum = b[i]; 472f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4733f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 474f1747703SBarry Smith } 475f1747703SBarry Smith xt = sum; 476f1747703SBarry Smith #else 47771044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 478f1747703SBarry Smith #endif 47955a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 480289bc588SBarry Smith } 481289bc588SBarry Smith } 482fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 483289bc588SBarry Smith for (i=m-1; i>=0; i--) { 484aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 485f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 486f1747703SBarry Smith not happy about returning a double complex */ 48713f74950SBarry Smith PetscInt _i; 48887828ca2SBarry Smith PetscScalar sum = b[i]; 489f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4903f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 491f1747703SBarry Smith } 492f1747703SBarry Smith xt = sum; 493f1747703SBarry Smith #else 49471044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 495f1747703SBarry Smith #endif 49655a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 497289bc588SBarry Smith } 498289bc588SBarry Smith } 499289bc588SBarry Smith } 5001ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 5011ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5023a40ed3dSBarry Smith PetscFunctionReturn(0); 503289bc588SBarry Smith } 504289bc588SBarry Smith 505289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5064a2ae208SSatish Balay #undef __FUNCT__ 5074a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense" 508dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 509289bc588SBarry Smith { 510c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 51187828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 512dfbe8321SBarry Smith PetscErrorCode ierr; 5130805154bSBarry Smith PetscBLASInt m, n,_One=1; 514ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 5153a40ed3dSBarry Smith 5163a40ed3dSBarry Smith PetscFunctionBegin; 517d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 518d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 519d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5201ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5211ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 52271044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One); 5231ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5241ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 525d0f46423SBarry Smith ierr = PetscLogFlops(2*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 5263a40ed3dSBarry Smith PetscFunctionReturn(0); 527289bc588SBarry Smith } 5286ee01492SSatish Balay 5294a2ae208SSatish Balay #undef __FUNCT__ 5304a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense" 531dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 532289bc588SBarry Smith { 533c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 53487828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0; 535dfbe8321SBarry Smith PetscErrorCode ierr; 5360805154bSBarry Smith PetscBLASInt m, n, _One=1; 5373a40ed3dSBarry Smith 5383a40ed3dSBarry Smith PetscFunctionBegin; 539d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 540d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 541d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5421ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5431ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 54471044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One); 5451ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5461ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 547d0f46423SBarry Smith ierr = PetscLogFlops(2*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr); 5483a40ed3dSBarry Smith PetscFunctionReturn(0); 549289bc588SBarry Smith } 5506ee01492SSatish Balay 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense" 553dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 554289bc588SBarry Smith { 555c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 55687828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0; 557dfbe8321SBarry Smith PetscErrorCode ierr; 5580805154bSBarry Smith PetscBLASInt m, n, _One=1; 5593a40ed3dSBarry Smith 5603a40ed3dSBarry Smith PetscFunctionBegin; 561d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 562d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 563d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 564600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5651ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5661ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 56771044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5681ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5691ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 570d0f46423SBarry Smith ierr = PetscLogFlops(2*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5713a40ed3dSBarry Smith PetscFunctionReturn(0); 572289bc588SBarry Smith } 5736ee01492SSatish Balay 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense" 576dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 577289bc588SBarry Smith { 578c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 57987828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 580dfbe8321SBarry Smith PetscErrorCode ierr; 5810805154bSBarry Smith PetscBLASInt m, n, _One=1; 58287828ca2SBarry Smith PetscScalar _DOne=1.0; 5833a40ed3dSBarry Smith 5843a40ed3dSBarry Smith PetscFunctionBegin; 585d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 586d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 587d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 588600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5891ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5901ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 59171044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5921ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5931ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 594d0f46423SBarry Smith ierr = PetscLogFlops(2*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5953a40ed3dSBarry Smith PetscFunctionReturn(0); 596289bc588SBarry Smith } 597289bc588SBarry Smith 598289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5994a2ae208SSatish Balay #undef __FUNCT__ 6004a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense" 60113f74950SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 602289bc588SBarry Smith { 603c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 60487828ca2SBarry Smith PetscScalar *v; 6056849ba73SBarry Smith PetscErrorCode ierr; 60613f74950SBarry Smith PetscInt i; 60767e560aaSBarry Smith 6083a40ed3dSBarry Smith PetscFunctionBegin; 609d0f46423SBarry Smith *ncols = A->cmap->n; 610289bc588SBarry Smith if (cols) { 611d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscInt),cols);CHKERRQ(ierr); 612d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 613289bc588SBarry Smith } 614289bc588SBarry Smith if (vals) { 615d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr); 616289bc588SBarry Smith v = mat->v + row; 617d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 618289bc588SBarry Smith } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620289bc588SBarry Smith } 6216ee01492SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense" 62413f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 625289bc588SBarry Smith { 626dfbe8321SBarry Smith PetscErrorCode ierr; 627606d414cSSatish Balay PetscFunctionBegin; 628606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 629606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 6303a40ed3dSBarry Smith PetscFunctionReturn(0); 631289bc588SBarry Smith } 632289bc588SBarry Smith /* ----------------------------------------------------------------*/ 6334a2ae208SSatish Balay #undef __FUNCT__ 6344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense" 63513f74950SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 636289bc588SBarry Smith { 637c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 63813f74950SBarry Smith PetscInt i,j,idx=0; 639d6dfbf8fSBarry Smith 6403a40ed3dSBarry Smith PetscFunctionBegin; 641289bc588SBarry Smith if (!mat->roworiented) { 642dbb450caSBarry Smith if (addv == INSERT_VALUES) { 643289bc588SBarry Smith for (j=0; j<n; j++) { 644cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 646d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 64758804f6dSBarry Smith #endif 648289bc588SBarry Smith for (i=0; i<m; i++) { 649cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6502515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 651d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 65258804f6dSBarry Smith #endif 653cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 654289bc588SBarry Smith } 655289bc588SBarry Smith } 6563a40ed3dSBarry Smith } else { 657289bc588SBarry Smith for (j=0; j<n; j++) { 658cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6592515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 660d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 66158804f6dSBarry Smith #endif 662289bc588SBarry Smith for (i=0; i<m; i++) { 663cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 665d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 66658804f6dSBarry Smith #endif 667cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 668289bc588SBarry Smith } 669289bc588SBarry Smith } 670289bc588SBarry Smith } 6713a40ed3dSBarry Smith } else { 672dbb450caSBarry Smith if (addv == INSERT_VALUES) { 673e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 674cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 676d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 67758804f6dSBarry Smith #endif 678e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 679cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 681d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 68258804f6dSBarry Smith #endif 683cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 684e8d4e0b9SBarry Smith } 685e8d4e0b9SBarry Smith } 6863a40ed3dSBarry Smith } else { 687289bc588SBarry Smith for (i=0; i<m; i++) { 688cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 690d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 69158804f6dSBarry Smith #endif 692289bc588SBarry Smith for (j=0; j<n; j++) { 693cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 695d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 69658804f6dSBarry Smith #endif 697cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 698289bc588SBarry Smith } 699289bc588SBarry Smith } 700289bc588SBarry Smith } 701e8d4e0b9SBarry Smith } 7023a40ed3dSBarry Smith PetscFunctionReturn(0); 703289bc588SBarry Smith } 704e8d4e0b9SBarry Smith 7054a2ae208SSatish Balay #undef __FUNCT__ 7064a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense" 70713f74950SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 708ae80bb75SLois Curfman McInnes { 709ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 71013f74950SBarry Smith PetscInt i,j; 711ae80bb75SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713ae80bb75SLois Curfman McInnes /* row-oriented output */ 714ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 71597e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 716d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n); 717ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 7186f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 719d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n); 72097e567efSBarry Smith *v++ = mat->v[indexn[j]*mat->lda + indexm[i]]; 721ae80bb75SLois Curfman McInnes } 722ae80bb75SLois Curfman McInnes } 7233a40ed3dSBarry Smith PetscFunctionReturn(0); 724ae80bb75SLois Curfman McInnes } 725ae80bb75SLois Curfman McInnes 726289bc588SBarry Smith /* -----------------------------------------------------------------*/ 727289bc588SBarry Smith 728e090d566SSatish Balay #include "petscsys.h" 72988e32edaSLois Curfman McInnes 7304a2ae208SSatish Balay #undef __FUNCT__ 7314a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense" 732a313700dSBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer, const MatType type,Mat *A) 73388e32edaSLois Curfman McInnes { 73488e32edaSLois Curfman McInnes Mat_SeqDense *a; 73588e32edaSLois Curfman McInnes Mat B; 7366849ba73SBarry Smith PetscErrorCode ierr; 73713f74950SBarry Smith PetscInt *scols,i,j,nz,header[4]; 73813f74950SBarry Smith int fd; 73913f74950SBarry Smith PetscMPIInt size; 74013f74950SBarry Smith PetscInt *rowlengths = 0,M,N,*cols; 74187828ca2SBarry Smith PetscScalar *vals,*svals,*v,*w; 74219bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 74388e32edaSLois Curfman McInnes 7443a40ed3dSBarry Smith PetscFunctionBegin; 745d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 74629bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 747b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 7480752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 749552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object"); 75088e32edaSLois Curfman McInnes M = header[1]; N = header[2]; nz = header[3]; 75188e32edaSLois Curfman McInnes 75290ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */ 753f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 754f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 755be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7565c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 75790ace30eSBarry Smith B = *A; 75890ace30eSBarry Smith a = (Mat_SeqDense*)B->data; 7594a41a4d3SSatish Balay v = a->v; 7604a41a4d3SSatish Balay /* Allocate some temp space to read in the values and then flip them 7614a41a4d3SSatish Balay from row major to column major */ 762b72907f3SBarry Smith ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr); 76390ace30eSBarry Smith /* read in nonzero values */ 7644a41a4d3SSatish Balay ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr); 7654a41a4d3SSatish Balay /* now flip the values and store them in the matrix*/ 7664a41a4d3SSatish Balay for (j=0; j<N; j++) { 7674a41a4d3SSatish Balay for (i=0; i<M; i++) { 7684a41a4d3SSatish Balay *v++ =w[i*N+j]; 7694a41a4d3SSatish Balay } 7704a41a4d3SSatish Balay } 771606d414cSSatish Balay ierr = PetscFree(w);CHKERRQ(ierr); 7726d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7736d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 77490ace30eSBarry Smith } else { 77588e32edaSLois Curfman McInnes /* read row lengths */ 77613f74950SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 7770752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 77888e32edaSLois Curfman McInnes 77988e32edaSLois Curfman McInnes /* create our matrix */ 780f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 781f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 782be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7835c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 78488e32edaSLois Curfman McInnes B = *A; 78588e32edaSLois Curfman McInnes a = (Mat_SeqDense*)B->data; 78688e32edaSLois Curfman McInnes v = a->v; 78788e32edaSLois Curfman McInnes 78888e32edaSLois Curfman McInnes /* read column indices and nonzeros */ 78913f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&scols);CHKERRQ(ierr); 790b0a32e0cSBarry Smith cols = scols; 7910752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 79287828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr); 793b0a32e0cSBarry Smith vals = svals; 7940752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 79588e32edaSLois Curfman McInnes 79688e32edaSLois Curfman McInnes /* insert into matrix */ 79788e32edaSLois Curfman McInnes for (i=0; i<M; i++) { 79888e32edaSLois Curfman McInnes for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j]; 79988e32edaSLois Curfman McInnes svals += rowlengths[i]; scols += rowlengths[i]; 80088e32edaSLois Curfman McInnes } 801606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 802606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 803606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 80488e32edaSLois Curfman McInnes 8056d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8066d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 80790ace30eSBarry Smith } 8083a40ed3dSBarry Smith PetscFunctionReturn(0); 80988e32edaSLois Curfman McInnes } 81088e32edaSLois Curfman McInnes 811e090d566SSatish Balay #include "petscsys.h" 812932b0c3eSLois Curfman McInnes 8134a2ae208SSatish Balay #undef __FUNCT__ 8144a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII" 8156849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 816289bc588SBarry Smith { 817932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 818dfbe8321SBarry Smith PetscErrorCode ierr; 81913f74950SBarry Smith PetscInt i,j; 8202dcb1b2aSMatthew Knepley const char *name; 82187828ca2SBarry Smith PetscScalar *v; 822f3ef73ceSBarry Smith PetscViewerFormat format; 8235f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 8245f481a85SSatish Balay PetscTruth allreal = PETSC_TRUE; 8255f481a85SSatish Balay #endif 826932b0c3eSLois Curfman McInnes 8273a40ed3dSBarry Smith PetscFunctionBegin; 828435da068SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 829b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 830456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 8313a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 832fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 833b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 834d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 83544cd7ae7SLois Curfman McInnes v = a->v + i; 83677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 837d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 838aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 839329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 840a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 841329f5518SBarry Smith } else if (PetscRealPart(*v)) { 842a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,PetscRealPart(*v));CHKERRQ(ierr); 8436831982aSBarry Smith } 84480cd9d93SLois Curfman McInnes #else 8456831982aSBarry Smith if (*v) { 846a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,*v);CHKERRQ(ierr); 8476831982aSBarry Smith } 84880cd9d93SLois Curfman McInnes #endif 8491b807ce4Svictorle v += a->lda; 85080cd9d93SLois Curfman McInnes } 851b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 85280cd9d93SLois Curfman McInnes } 853b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 8543a40ed3dSBarry Smith } else { 855b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 856aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 85747989497SBarry Smith /* determine if matrix has all real values */ 85847989497SBarry Smith v = a->v; 859d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 860ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;} 86147989497SBarry Smith } 86247989497SBarry Smith #endif 863fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 8643a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 865d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr); 866d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 867fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 868ffac6cdbSBarry Smith } 869ffac6cdbSBarry Smith 870d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 871932b0c3eSLois Curfman McInnes v = a->v + i; 872d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 873aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 87447989497SBarry Smith if (allreal) { 875f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr); 87647989497SBarry Smith } else { 877f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 87847989497SBarry Smith } 879289bc588SBarry Smith #else 880f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr); 881289bc588SBarry Smith #endif 8821b807ce4Svictorle v += a->lda; 883289bc588SBarry Smith } 884b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 885289bc588SBarry Smith } 886fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 887b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 888ffac6cdbSBarry Smith } 889b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 890da3a660dSBarry Smith } 891b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8923a40ed3dSBarry Smith PetscFunctionReturn(0); 893289bc588SBarry Smith } 894289bc588SBarry Smith 8954a2ae208SSatish Balay #undef __FUNCT__ 8964a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary" 8976849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer) 898932b0c3eSLois Curfman McInnes { 899932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 9006849ba73SBarry Smith PetscErrorCode ierr; 90113f74950SBarry Smith int fd; 902d0f46423SBarry Smith PetscInt ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n; 90387828ca2SBarry Smith PetscScalar *v,*anonz,*vals; 904f3ef73ceSBarry Smith PetscViewerFormat format; 905932b0c3eSLois Curfman McInnes 9063a40ed3dSBarry Smith PetscFunctionBegin; 907b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 90890ace30eSBarry Smith 909b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 910fb9695e5SSatish Balay if (format == PETSC_VIEWER_BINARY_NATIVE) { 91190ace30eSBarry Smith /* store the matrix as a dense matrix */ 91213f74950SBarry Smith ierr = PetscMalloc(4*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 913552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 91490ace30eSBarry Smith col_lens[1] = m; 91590ace30eSBarry Smith col_lens[2] = n; 91690ace30eSBarry Smith col_lens[3] = MATRIX_BINARY_FORMAT_DENSE; 9176f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 918606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 91990ace30eSBarry Smith 92090ace30eSBarry Smith /* write out matrix, by rows */ 92187828ca2SBarry Smith ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 92290ace30eSBarry Smith v = a->v; 92390ace30eSBarry Smith for (j=0; j<n; j++) { 924578230a0SSatish Balay for (i=0; i<m; i++) { 925578230a0SSatish Balay vals[j + i*n] = *v++; 92690ace30eSBarry Smith } 92790ace30eSBarry Smith } 9286f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 929606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 93090ace30eSBarry Smith } else { 93113f74950SBarry Smith ierr = PetscMalloc((4+nz)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 932552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 933932b0c3eSLois Curfman McInnes col_lens[1] = m; 934932b0c3eSLois Curfman McInnes col_lens[2] = n; 935932b0c3eSLois Curfman McInnes col_lens[3] = nz; 936932b0c3eSLois Curfman McInnes 937932b0c3eSLois Curfman McInnes /* store lengths of each row and write (including header) to file */ 938932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) col_lens[4+i] = n; 9396f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 940932b0c3eSLois Curfman McInnes 941932b0c3eSLois Curfman McInnes /* Possibly should write in smaller increments, not whole matrix at once? */ 942932b0c3eSLois Curfman McInnes /* store column indices (zero start index) */ 943932b0c3eSLois Curfman McInnes ict = 0; 944932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 945932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) col_lens[ict++] = j; 946932b0c3eSLois Curfman McInnes } 9476f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 948606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 949932b0c3eSLois Curfman McInnes 950932b0c3eSLois Curfman McInnes /* store nonzero values */ 95187828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr); 952932b0c3eSLois Curfman McInnes ict = 0; 953932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 954932b0c3eSLois Curfman McInnes v = a->v + i; 955932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) { 9561b807ce4Svictorle anonz[ict++] = *v; v += a->lda; 957932b0c3eSLois Curfman McInnes } 958932b0c3eSLois Curfman McInnes } 9596f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 960606d414cSSatish Balay ierr = PetscFree(anonz);CHKERRQ(ierr); 96190ace30eSBarry Smith } 9623a40ed3dSBarry Smith PetscFunctionReturn(0); 963932b0c3eSLois Curfman McInnes } 964932b0c3eSLois Curfman McInnes 9654a2ae208SSatish Balay #undef __FUNCT__ 9664a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom" 967dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 968f1af5d2fSBarry Smith { 969f1af5d2fSBarry Smith Mat A = (Mat) Aa; 970f1af5d2fSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 9716849ba73SBarry Smith PetscErrorCode ierr; 972d0f46423SBarry Smith PetscInt m = A->rmap->n,n = A->cmap->n,color,i,j; 97387828ca2SBarry Smith PetscScalar *v = a->v; 974b0a32e0cSBarry Smith PetscViewer viewer; 975b0a32e0cSBarry Smith PetscDraw popup; 976329f5518SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0; 977f3ef73ceSBarry Smith PetscViewerFormat format; 978f1af5d2fSBarry Smith 979f1af5d2fSBarry Smith PetscFunctionBegin; 980f1af5d2fSBarry Smith 981f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 982b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 983b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 984f1af5d2fSBarry Smith 985f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 986fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 987f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 988b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 989f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 990f1af5d2fSBarry Smith x_l = j; 991f1af5d2fSBarry Smith x_r = x_l + 1.0; 992f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 993f1af5d2fSBarry Smith y_l = m - i - 1.0; 994f1af5d2fSBarry Smith y_r = y_l + 1.0; 995f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX) 996329f5518SBarry Smith if (PetscRealPart(v[j*m+i]) > 0.) { 997b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 998329f5518SBarry Smith } else if (PetscRealPart(v[j*m+i]) < 0.) { 999b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1000f1af5d2fSBarry Smith } else { 1001f1af5d2fSBarry Smith continue; 1002f1af5d2fSBarry Smith } 1003f1af5d2fSBarry Smith #else 1004f1af5d2fSBarry Smith if (v[j*m+i] > 0.) { 1005b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 1006f1af5d2fSBarry Smith } else if (v[j*m+i] < 0.) { 1007b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1008f1af5d2fSBarry Smith } else { 1009f1af5d2fSBarry Smith continue; 1010f1af5d2fSBarry Smith } 1011f1af5d2fSBarry Smith #endif 1012b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1013f1af5d2fSBarry Smith } 1014f1af5d2fSBarry Smith } 1015f1af5d2fSBarry Smith } else { 1016f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1017f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1018f1af5d2fSBarry Smith for(i = 0; i < m*n; i++) { 1019f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1020f1af5d2fSBarry Smith } 1021b0a32e0cSBarry Smith scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv; 1022b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1023b0a32e0cSBarry Smith if (popup) {ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);} 1024f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 1025f1af5d2fSBarry Smith x_l = j; 1026f1af5d2fSBarry Smith x_r = x_l + 1.0; 1027f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 1028f1af5d2fSBarry Smith y_l = m - i - 1.0; 1029f1af5d2fSBarry Smith y_r = y_l + 1.0; 1030b0a32e0cSBarry Smith color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i])); 1031b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1032f1af5d2fSBarry Smith } 1033f1af5d2fSBarry Smith } 1034f1af5d2fSBarry Smith } 1035f1af5d2fSBarry Smith PetscFunctionReturn(0); 1036f1af5d2fSBarry Smith } 1037f1af5d2fSBarry Smith 10384a2ae208SSatish Balay #undef __FUNCT__ 10394a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw" 1040dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1041f1af5d2fSBarry Smith { 1042b0a32e0cSBarry Smith PetscDraw draw; 1043f1af5d2fSBarry Smith PetscTruth isnull; 1044329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1045dfbe8321SBarry Smith PetscErrorCode ierr; 1046f1af5d2fSBarry Smith 1047f1af5d2fSBarry Smith PetscFunctionBegin; 1048b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1049b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1050abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1051f1af5d2fSBarry Smith 1052f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1053d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1054f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1055b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1056b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 1057f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 1058f1af5d2fSBarry Smith PetscFunctionReturn(0); 1059f1af5d2fSBarry Smith } 1060f1af5d2fSBarry Smith 10614a2ae208SSatish Balay #undef __FUNCT__ 10624a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense" 1063dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1064932b0c3eSLois Curfman McInnes { 1065dfbe8321SBarry Smith PetscErrorCode ierr; 10666805f65bSBarry Smith PetscTruth iascii,isbinary,isdraw; 1067932b0c3eSLois Curfman McInnes 10683a40ed3dSBarry Smith PetscFunctionBegin; 106932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1070fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1071fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10720f5bd95cSBarry Smith 1073c45a1595SBarry Smith if (iascii) { 1074c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 10750f5bd95cSBarry Smith } else if (isbinary) { 10763a40ed3dSBarry Smith ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr); 1077f1af5d2fSBarry Smith } else if (isdraw) { 1078f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 10795cd90555SBarry Smith } else { 1080958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name); 1081932b0c3eSLois Curfman McInnes } 10823a40ed3dSBarry Smith PetscFunctionReturn(0); 1083932b0c3eSLois Curfman McInnes } 1084289bc588SBarry Smith 10854a2ae208SSatish Balay #undef __FUNCT__ 10864a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense" 1087dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat) 1088289bc588SBarry Smith { 1089ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1090dfbe8321SBarry Smith PetscErrorCode ierr; 109190f02eecSBarry Smith 10923a40ed3dSBarry Smith PetscFunctionBegin; 1093aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1094d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n); 1095a5a9c739SBarry Smith #endif 109605b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 10976857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1098606d414cSSatish Balay ierr = PetscFree(l);CHKERRQ(ierr); 1099dbd8c25aSHong Zhang 1100dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1101901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 11024ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11034ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11044ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11053a40ed3dSBarry Smith PetscFunctionReturn(0); 1106289bc588SBarry Smith } 1107289bc588SBarry Smith 11084a2ae208SSatish Balay #undef __FUNCT__ 11094a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense" 1110fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1111289bc588SBarry Smith { 1112c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 11136849ba73SBarry Smith PetscErrorCode ierr; 111413f74950SBarry Smith PetscInt k,j,m,n,M; 111587828ca2SBarry Smith PetscScalar *v,tmp; 111648b35521SBarry Smith 11173a40ed3dSBarry Smith PetscFunctionBegin; 1118d0f46423SBarry Smith v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n; 1119e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && *matout == A) { /* in place transpose */ 1120a5ce6ee0Svictorle if (m != n) { 1121634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place"); 1122d64ed03dSBarry Smith } else { 1123d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1124289bc588SBarry Smith for (k=0; k<j; k++) { 11251b807ce4Svictorle tmp = v[j + k*M]; 11261b807ce4Svictorle v[j + k*M] = v[k + j*M]; 11271b807ce4Svictorle v[k + j*M] = tmp; 1128289bc588SBarry Smith } 1129289bc588SBarry Smith } 1130d64ed03dSBarry Smith } 11313a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1132d3e5ee88SLois Curfman McInnes Mat tmat; 1133ec8511deSBarry Smith Mat_SeqDense *tmatd; 113487828ca2SBarry Smith PetscScalar *v2; 1135ea709b57SSatish Balay 1136fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 11377adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&tmat);CHKERRQ(ierr); 1138d0f46423SBarry Smith ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr); 11397adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 11405c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr); 1141fc4dec0aSBarry Smith } else { 1142fc4dec0aSBarry Smith tmat = *matout; 1143fc4dec0aSBarry Smith } 1144ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 11450de55854SLois Curfman McInnes v = mat->v; v2 = tmatd->v; 1146d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 11471b807ce4Svictorle for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M]; 1148d3e5ee88SLois Curfman McInnes } 11496d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11506d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1151d3e5ee88SLois Curfman McInnes *matout = tmat; 115248b35521SBarry Smith } 11533a40ed3dSBarry Smith PetscFunctionReturn(0); 1154289bc588SBarry Smith } 1155289bc588SBarry Smith 11564a2ae208SSatish Balay #undef __FUNCT__ 11574a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense" 1158dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg) 1159289bc588SBarry Smith { 1160c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1161c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 116213f74950SBarry Smith PetscInt i,j; 116387828ca2SBarry Smith PetscScalar *v1 = mat1->v,*v2 = mat2->v; 11649ea5d5aeSSatish Balay 11653a40ed3dSBarry Smith PetscFunctionBegin; 1166d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1167d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1168d0f46423SBarry Smith for (i=0; i<A1->rmap->n; i++) { 11691b807ce4Svictorle v1 = mat1->v+i; v2 = mat2->v+i; 1170d0f46423SBarry Smith for (j=0; j<A1->cmap->n; j++) { 11713a40ed3dSBarry Smith if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 11721b807ce4Svictorle v1 += mat1->lda; v2 += mat2->lda; 11731b807ce4Svictorle } 1174289bc588SBarry Smith } 117577c4ece6SBarry Smith *flg = PETSC_TRUE; 11763a40ed3dSBarry Smith PetscFunctionReturn(0); 1177289bc588SBarry Smith } 1178289bc588SBarry Smith 11794a2ae208SSatish Balay #undef __FUNCT__ 11804a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense" 1181dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1182289bc588SBarry Smith { 1183c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1184dfbe8321SBarry Smith PetscErrorCode ierr; 118513f74950SBarry Smith PetscInt i,n,len; 118687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 118744cd7ae7SLois Curfman McInnes 11883a40ed3dSBarry Smith PetscFunctionBegin; 11892dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 11907a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 11911ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1192d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 1193d0f46423SBarry Smith if (n != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 119444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 11951b807ce4Svictorle x[i] = mat->v[i*mat->lda + i]; 1196289bc588SBarry Smith } 11971ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 11983a40ed3dSBarry Smith PetscFunctionReturn(0); 1199289bc588SBarry Smith } 1200289bc588SBarry Smith 12014a2ae208SSatish Balay #undef __FUNCT__ 12024a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense" 1203dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1204289bc588SBarry Smith { 1205c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 120687828ca2SBarry Smith PetscScalar *l,*r,x,*v; 1207dfbe8321SBarry Smith PetscErrorCode ierr; 1208d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 120955659b69SBarry Smith 12103a40ed3dSBarry Smith PetscFunctionBegin; 121128988994SBarry Smith if (ll) { 12127a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 12131ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 1214d0f46423SBarry Smith if (m != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1215da3a660dSBarry Smith for (i=0; i<m; i++) { 1216da3a660dSBarry Smith x = l[i]; 1217da3a660dSBarry Smith v = mat->v + i; 1218da3a660dSBarry Smith for (j=0; j<n; j++) { (*v) *= x; v+= m;} 1219da3a660dSBarry Smith } 12201ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 1221efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1222da3a660dSBarry Smith } 122328988994SBarry Smith if (rr) { 12247a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 12251ebc52fbSHong Zhang ierr = VecGetArray(rr,&r);CHKERRQ(ierr); 1226d0f46423SBarry Smith if (n != A->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1227da3a660dSBarry Smith for (i=0; i<n; i++) { 1228da3a660dSBarry Smith x = r[i]; 1229da3a660dSBarry Smith v = mat->v + i*m; 1230da3a660dSBarry Smith for (j=0; j<m; j++) { (*v++) *= x;} 1231da3a660dSBarry Smith } 12321ebc52fbSHong Zhang ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr); 1233efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1234da3a660dSBarry Smith } 12353a40ed3dSBarry Smith PetscFunctionReturn(0); 1236289bc588SBarry Smith } 1237289bc588SBarry Smith 12384a2ae208SSatish Balay #undef __FUNCT__ 12394a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense" 1240dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1241289bc588SBarry Smith { 1242c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 124387828ca2SBarry Smith PetscScalar *v = mat->v; 1244329f5518SBarry Smith PetscReal sum = 0.0; 1245d0f46423SBarry Smith PetscInt lda=mat->lda,m=A->rmap->n,i,j; 1246efee365bSSatish Balay PetscErrorCode ierr; 124755659b69SBarry Smith 12483a40ed3dSBarry Smith PetscFunctionBegin; 1249289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1250a5ce6ee0Svictorle if (lda>m) { 1251d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1252a5ce6ee0Svictorle v = mat->v+j*lda; 1253a5ce6ee0Svictorle for (i=0; i<m; i++) { 1254a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX) 1255a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1256a5ce6ee0Svictorle #else 1257a5ce6ee0Svictorle sum += (*v)*(*v); v++; 1258a5ce6ee0Svictorle #endif 1259a5ce6ee0Svictorle } 1260a5ce6ee0Svictorle } 1261a5ce6ee0Svictorle } else { 1262d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 1263aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1264329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1265289bc588SBarry Smith #else 1266289bc588SBarry Smith sum += (*v)*(*v); v++; 1267289bc588SBarry Smith #endif 1268289bc588SBarry Smith } 1269a5ce6ee0Svictorle } 1270064f8208SBarry Smith *nrm = sqrt(sum); 1271d0f46423SBarry Smith ierr = PetscLogFlops(2*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12723a40ed3dSBarry Smith } else if (type == NORM_1) { 1273064f8208SBarry Smith *nrm = 0.0; 1274d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 12751b807ce4Svictorle v = mat->v + j*mat->lda; 1276289bc588SBarry Smith sum = 0.0; 1277d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 127833a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1279289bc588SBarry Smith } 1280064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1281289bc588SBarry Smith } 1282d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12833a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1284064f8208SBarry Smith *nrm = 0.0; 1285d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 1286289bc588SBarry Smith v = mat->v + j; 1287289bc588SBarry Smith sum = 0.0; 1288d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 12891b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1290289bc588SBarry Smith } 1291064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1292289bc588SBarry Smith } 1293d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12943a40ed3dSBarry Smith } else { 129529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No two norm"); 1296289bc588SBarry Smith } 12973a40ed3dSBarry Smith PetscFunctionReturn(0); 1298289bc588SBarry Smith } 1299289bc588SBarry Smith 13004a2ae208SSatish Balay #undef __FUNCT__ 13014a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense" 13024e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscTruth flg) 1303289bc588SBarry Smith { 1304c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 130563ba0a88SBarry Smith PetscErrorCode ierr; 130667e560aaSBarry Smith 13073a40ed3dSBarry Smith PetscFunctionBegin; 1308b5a2b587SKris Buschelman switch (op) { 1309b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 13104e0d8c25SBarry Smith aij->roworiented = flg; 1311b5a2b587SKris Buschelman break; 1312512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1313b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 13143971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 13154e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1316b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1317b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 131877e54ba9SKris Buschelman case MAT_SYMMETRIC: 131977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13209a4540c5SBarry Smith case MAT_HERMITIAN: 13219a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1322600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 1323290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 132477e54ba9SKris Buschelman break; 1325b5a2b587SKris Buschelman default: 1326600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 13273a40ed3dSBarry Smith } 13283a40ed3dSBarry Smith PetscFunctionReturn(0); 1329289bc588SBarry Smith } 1330289bc588SBarry Smith 13314a2ae208SSatish Balay #undef __FUNCT__ 13324a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense" 1333dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A) 13346f0a148fSBarry Smith { 1335ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 13366849ba73SBarry Smith PetscErrorCode ierr; 1337d0f46423SBarry Smith PetscInt lda=l->lda,m=A->rmap->n,j; 13383a40ed3dSBarry Smith 13393a40ed3dSBarry Smith PetscFunctionBegin; 1340a5ce6ee0Svictorle if (lda>m) { 1341d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1342a5ce6ee0Svictorle ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 1343a5ce6ee0Svictorle } 1344a5ce6ee0Svictorle } else { 1345d0f46423SBarry Smith ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1346a5ce6ee0Svictorle } 13473a40ed3dSBarry Smith PetscFunctionReturn(0); 13486f0a148fSBarry Smith } 13496f0a148fSBarry Smith 13504a2ae208SSatish Balay #undef __FUNCT__ 13514a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense" 1352f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 13536f0a148fSBarry Smith { 1354ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1355d0f46423SBarry Smith PetscInt n = A->cmap->n,i,j; 135687828ca2SBarry Smith PetscScalar *slot; 135755659b69SBarry Smith 13583a40ed3dSBarry Smith PetscFunctionBegin; 13596f0a148fSBarry Smith for (i=0; i<N; i++) { 13606f0a148fSBarry Smith slot = l->v + rows[i]; 13616f0a148fSBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += n;} 13626f0a148fSBarry Smith } 1363f4df32b1SMatthew Knepley if (diag != 0.0) { 13646f0a148fSBarry Smith for (i=0; i<N; i++) { 13656f0a148fSBarry Smith slot = l->v + (n+1)*rows[i]; 1366f4df32b1SMatthew Knepley *slot = diag; 13676f0a148fSBarry Smith } 13686f0a148fSBarry Smith } 13693a40ed3dSBarry Smith PetscFunctionReturn(0); 13706f0a148fSBarry Smith } 1371557bce09SLois Curfman McInnes 13724a2ae208SSatish Balay #undef __FUNCT__ 13734a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense" 1374dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[]) 137564e87e97SBarry Smith { 1376c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13773a40ed3dSBarry Smith 13783a40ed3dSBarry Smith PetscFunctionBegin; 1379d0f46423SBarry Smith if (mat->lda != A->rmap->n) SETERRQ(PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows"); 138064e87e97SBarry Smith *array = mat->v; 13813a40ed3dSBarry Smith PetscFunctionReturn(0); 138264e87e97SBarry Smith } 13830754003eSLois Curfman McInnes 13844a2ae208SSatish Balay #undef __FUNCT__ 13854a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense" 1386dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[]) 1387ff14e315SSatish Balay { 13883a40ed3dSBarry Smith PetscFunctionBegin; 138909b544d4SBarry Smith *array = 0; /* user cannot accidently use the array later */ 13903a40ed3dSBarry Smith PetscFunctionReturn(0); 1391ff14e315SSatish Balay } 13920754003eSLois Curfman McInnes 13934a2ae208SSatish Balay #undef __FUNCT__ 13944a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense" 139513f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 13960754003eSLois Curfman McInnes { 1397c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13986849ba73SBarry Smith PetscErrorCode ierr; 13995d0c19d7SBarry Smith PetscInt i,j,nrows,ncols; 14005d0c19d7SBarry Smith const PetscInt *irow,*icol; 140187828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 14020754003eSLois Curfman McInnes Mat newmat; 14030754003eSLois Curfman McInnes 14043a40ed3dSBarry Smith PetscFunctionBegin; 140578b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 140678b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 1407e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 1408e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 14090754003eSLois Curfman McInnes 1410182d2002SSatish Balay /* Check submatrixcall */ 1411182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 141213f74950SBarry Smith PetscInt n_cols,n_rows; 1413182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 141421a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 141521a2c019SBarry Smith /* resize the result result matrix to match number of requested rows/columns */ 141621a2c019SBarry Smith ierr = MatSetSizes(*B,nrows,nrows,nrows,nrows);CHKERRQ(ierr); 141721a2c019SBarry Smith } 1418182d2002SSatish Balay newmat = *B; 1419182d2002SSatish Balay } else { 14200754003eSLois Curfman McInnes /* Create and fill new matrix */ 14217adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 1422f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 14237adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 14245c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 1425182d2002SSatish Balay } 1426182d2002SSatish Balay 1427182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 1428182d2002SSatish Balay bv = ((Mat_SeqDense*)newmat->data)->v; 1429182d2002SSatish Balay 1430182d2002SSatish Balay for (i=0; i<ncols; i++) { 14316de62eeeSBarry Smith av = v + mat->lda*icol[i]; 1432182d2002SSatish Balay for (j=0; j<nrows; j++) { 1433182d2002SSatish Balay *bv++ = av[irow[j]]; 14340754003eSLois Curfman McInnes } 14350754003eSLois Curfman McInnes } 1436182d2002SSatish Balay 1437182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 14386d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14396d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14400754003eSLois Curfman McInnes 14410754003eSLois Curfman McInnes /* Free work space */ 144278b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 144378b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 1444182d2002SSatish Balay *B = newmat; 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 14460754003eSLois Curfman McInnes } 14470754003eSLois Curfman McInnes 14484a2ae208SSatish Balay #undef __FUNCT__ 14494a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense" 145013f74950SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1451905e6a2fSBarry Smith { 14526849ba73SBarry Smith PetscErrorCode ierr; 145313f74950SBarry Smith PetscInt i; 1454905e6a2fSBarry Smith 14553a40ed3dSBarry Smith PetscFunctionBegin; 1456905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 1457b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr); 1458905e6a2fSBarry Smith } 1459905e6a2fSBarry Smith 1460905e6a2fSBarry Smith for (i=0; i<n; i++) { 14616a6a5d1dSBarry Smith ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr); 1462905e6a2fSBarry Smith } 14633a40ed3dSBarry Smith PetscFunctionReturn(0); 1464905e6a2fSBarry Smith } 1465905e6a2fSBarry Smith 14664a2ae208SSatish Balay #undef __FUNCT__ 1467c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyBegin_SeqDense" 1468c0aa2d19SHong Zhang PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 1469c0aa2d19SHong Zhang { 1470c0aa2d19SHong Zhang PetscFunctionBegin; 1471c0aa2d19SHong Zhang PetscFunctionReturn(0); 1472c0aa2d19SHong Zhang } 1473c0aa2d19SHong Zhang 1474c0aa2d19SHong Zhang #undef __FUNCT__ 1475c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyEnd_SeqDense" 1476c0aa2d19SHong Zhang PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 1477c0aa2d19SHong Zhang { 1478c0aa2d19SHong Zhang PetscFunctionBegin; 1479c0aa2d19SHong Zhang PetscFunctionReturn(0); 1480c0aa2d19SHong Zhang } 1481c0aa2d19SHong Zhang 1482c0aa2d19SHong Zhang #undef __FUNCT__ 14834a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense" 1484dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 14854b0e389bSBarry Smith { 14864b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data; 14876849ba73SBarry Smith PetscErrorCode ierr; 1488d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 14893a40ed3dSBarry Smith 14903a40ed3dSBarry Smith PetscFunctionBegin; 149133f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 149233f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 1493cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 14943a40ed3dSBarry Smith PetscFunctionReturn(0); 14953a40ed3dSBarry Smith } 1496d0f46423SBarry Smith if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 1497a5ce6ee0Svictorle if (lda1>m || lda2>m) { 14980dbb7854Svictorle for (j=0; j<n; j++) { 1499a5ce6ee0Svictorle ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 1500a5ce6ee0Svictorle } 1501a5ce6ee0Svictorle } else { 1502d0f46423SBarry Smith ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1503a5ce6ee0Svictorle } 1504273d9f13SBarry Smith PetscFunctionReturn(0); 1505273d9f13SBarry Smith } 1506273d9f13SBarry Smith 15074a2ae208SSatish Balay #undef __FUNCT__ 15084a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense" 1509dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A) 1510273d9f13SBarry Smith { 1511dfbe8321SBarry Smith PetscErrorCode ierr; 1512273d9f13SBarry Smith 1513273d9f13SBarry Smith PetscFunctionBegin; 1514273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr); 15153a40ed3dSBarry Smith PetscFunctionReturn(0); 15164b0e389bSBarry Smith } 15174b0e389bSBarry Smith 1518284134d9SBarry Smith #undef __FUNCT__ 1519284134d9SBarry Smith #define __FUNCT__ "MatSetSizes_SeqDense" 1520284134d9SBarry Smith PetscErrorCode MatSetSizes_SeqDense(Mat A,PetscInt m,PetscInt n,PetscInt M,PetscInt N) 1521284134d9SBarry Smith { 1522284134d9SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 152321a2c019SBarry Smith PetscErrorCode ierr; 1524284134d9SBarry Smith PetscFunctionBegin; 152521a2c019SBarry Smith /* this will not be called before lda, Mmax, and Nmax have been set */ 1526284134d9SBarry Smith m = PetscMax(m,M); 1527284134d9SBarry Smith n = PetscMax(n,N); 152821a2c019SBarry Smith if (m > a->Mmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number rows of dense matrix larger then its initial size %d, requested %d",a->lda,(int)m); 1529284134d9SBarry Smith if (n > a->Nmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number columns of dense matrix larger then its initial size %d, requested %d",a->Nmax,(int)n); 1530d0f46423SBarry Smith A->rmap->n = A->rmap->n = m; 1531d0f46423SBarry Smith A->cmap->n = A->cmap->N = n; 153221a2c019SBarry Smith if (a->changelda) a->lda = m; 153321a2c019SBarry Smith ierr = PetscMemzero(a->v,m*n*sizeof(PetscScalar));CHKERRQ(ierr); 1534284134d9SBarry Smith PetscFunctionReturn(0); 1535284134d9SBarry Smith } 1536170fe5c8SBarry Smith 1537284134d9SBarry Smith 1538a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 1539a9fe9ddaSSatish Balay #undef __FUNCT__ 1540a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMult_SeqDense_SeqDense" 1541a9fe9ddaSSatish Balay PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1542a9fe9ddaSSatish Balay { 1543a9fe9ddaSSatish Balay PetscErrorCode ierr; 1544a9fe9ddaSSatish Balay 1545a9fe9ddaSSatish Balay PetscFunctionBegin; 1546a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1547a9fe9ddaSSatish Balay ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1548a9fe9ddaSSatish Balay } 1549a9fe9ddaSSatish Balay ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1550a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1551a9fe9ddaSSatish Balay } 1552a9fe9ddaSSatish Balay 1553a9fe9ddaSSatish Balay #undef __FUNCT__ 1554a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultSymbolic_SeqDense_SeqDense" 1555a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1556a9fe9ddaSSatish Balay { 1557ee16a9a1SHong Zhang PetscErrorCode ierr; 1558d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 1559ee16a9a1SHong Zhang Mat Cmat; 1560a9fe9ddaSSatish Balay 1561ee16a9a1SHong Zhang PetscFunctionBegin; 1562d0f46423SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 1563ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1564ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1565ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1566ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1567ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1568ee16a9a1SHong Zhang *C = Cmat; 1569ee16a9a1SHong Zhang PetscFunctionReturn(0); 1570ee16a9a1SHong Zhang } 1571a9fe9ddaSSatish Balay 157298a3b096SSatish Balay #undef __FUNCT__ 1573a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultNumeric_SeqDense_SeqDense" 1574a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1575a9fe9ddaSSatish Balay { 1576a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1577a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1578a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 15790805154bSBarry Smith PetscBLASInt m,n,k; 1580a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1581a9fe9ddaSSatish Balay 1582a9fe9ddaSSatish Balay PetscFunctionBegin; 1583d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 1584d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1585d0f46423SBarry Smith k = PetscBLASIntCast(A->cmap->n); 1586a9fe9ddaSSatish Balay BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1587a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1588a9fe9ddaSSatish Balay } 1589a9fe9ddaSSatish Balay 1590a9fe9ddaSSatish Balay #undef __FUNCT__ 1591a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTranspose_SeqDense_SeqDense" 1592a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTranspose_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1593a9fe9ddaSSatish Balay { 1594a9fe9ddaSSatish Balay PetscErrorCode ierr; 1595a9fe9ddaSSatish Balay 1596a9fe9ddaSSatish Balay PetscFunctionBegin; 1597a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1598a9fe9ddaSSatish Balay ierr = MatMatMultTransposeSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1599a9fe9ddaSSatish Balay } 1600a9fe9ddaSSatish Balay ierr = MatMatMultTransposeNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1601a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1602a9fe9ddaSSatish Balay } 1603a9fe9ddaSSatish Balay 1604a9fe9ddaSSatish Balay #undef __FUNCT__ 1605a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeSymbolic_SeqDense_SeqDense" 1606a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1607a9fe9ddaSSatish Balay { 1608ee16a9a1SHong Zhang PetscErrorCode ierr; 1609d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 1610ee16a9a1SHong Zhang Mat Cmat; 1611a9fe9ddaSSatish Balay 1612ee16a9a1SHong Zhang PetscFunctionBegin; 1613d0f46423SBarry Smith if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n); 1614ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1615ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1616ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1617ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1618ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1619ee16a9a1SHong Zhang *C = Cmat; 1620ee16a9a1SHong Zhang PetscFunctionReturn(0); 1621ee16a9a1SHong Zhang } 1622a9fe9ddaSSatish Balay 1623a9fe9ddaSSatish Balay #undef __FUNCT__ 1624a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeNumeric_SeqDense_SeqDense" 1625a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1626a9fe9ddaSSatish Balay { 1627a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1628a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1629a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16300805154bSBarry Smith PetscBLASInt m,n,k; 1631a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1632a9fe9ddaSSatish Balay 1633a9fe9ddaSSatish Balay PetscFunctionBegin; 1634d0f46423SBarry Smith m = PetscBLASIntCast(A->cmap->n); 1635d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1636d0f46423SBarry Smith k = PetscBLASIntCast(A->rmap->n); 16372fbe02b9SBarry Smith /* 16382fbe02b9SBarry Smith Note the m and n arguments below are the number rows and columns of A', not A! 16392fbe02b9SBarry Smith */ 1640a9fe9ddaSSatish Balay BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1641a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1642a9fe9ddaSSatish Balay } 1643985db425SBarry Smith 1644985db425SBarry Smith #undef __FUNCT__ 1645985db425SBarry Smith #define __FUNCT__ "MatGetRowMax_SeqDense" 1646985db425SBarry Smith PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 1647985db425SBarry Smith { 1648985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1649985db425SBarry Smith PetscErrorCode ierr; 1650d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1651985db425SBarry Smith PetscScalar *x; 1652985db425SBarry Smith MatScalar *aa = a->v; 1653985db425SBarry Smith 1654985db425SBarry Smith PetscFunctionBegin; 1655985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1656985db425SBarry Smith 1657985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1658985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1659985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1660d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1661985db425SBarry Smith for (i=0; i<m; i++) { 1662985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1663985db425SBarry Smith for (j=1; j<n; j++){ 1664985db425SBarry Smith if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1665985db425SBarry Smith } 1666985db425SBarry Smith } 1667985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1668985db425SBarry Smith PetscFunctionReturn(0); 1669985db425SBarry Smith } 1670985db425SBarry Smith 1671985db425SBarry Smith #undef __FUNCT__ 1672985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqDense" 1673985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 1674985db425SBarry Smith { 1675985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1676985db425SBarry Smith PetscErrorCode ierr; 1677d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1678985db425SBarry Smith PetscScalar *x; 1679985db425SBarry Smith PetscReal atmp; 1680985db425SBarry Smith MatScalar *aa = a->v; 1681985db425SBarry Smith 1682985db425SBarry Smith PetscFunctionBegin; 1683985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1684985db425SBarry Smith 1685985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1686985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1687985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1688d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1689985db425SBarry Smith for (i=0; i<m; i++) { 16909189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 1691985db425SBarry Smith for (j=1; j<n; j++){ 1692985db425SBarry Smith atmp = PetscAbsScalar(aa[i+m*j]); 1693985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 1694985db425SBarry Smith } 1695985db425SBarry Smith } 1696985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1697985db425SBarry Smith PetscFunctionReturn(0); 1698985db425SBarry Smith } 1699985db425SBarry Smith 1700985db425SBarry Smith #undef __FUNCT__ 1701985db425SBarry Smith #define __FUNCT__ "MatGetRowMin_SeqDense" 1702985db425SBarry Smith PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 1703985db425SBarry Smith { 1704985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1705985db425SBarry Smith PetscErrorCode ierr; 1706d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1707985db425SBarry Smith PetscScalar *x; 1708985db425SBarry Smith MatScalar *aa = a->v; 1709985db425SBarry Smith 1710985db425SBarry Smith PetscFunctionBegin; 1711985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1712985db425SBarry Smith 1713985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1714985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1715985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1716d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1717985db425SBarry Smith for (i=0; i<m; i++) { 1718985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1719985db425SBarry Smith for (j=1; j<n; j++){ 1720985db425SBarry Smith if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1721985db425SBarry Smith } 1722985db425SBarry Smith } 1723985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1724985db425SBarry Smith PetscFunctionReturn(0); 1725985db425SBarry Smith } 1726985db425SBarry Smith 17278d0534beSBarry Smith #undef __FUNCT__ 17288d0534beSBarry Smith #define __FUNCT__ "MatGetColumnVector_SeqDense" 17298d0534beSBarry Smith PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 17308d0534beSBarry Smith { 17318d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 17328d0534beSBarry Smith PetscErrorCode ierr; 17338d0534beSBarry Smith PetscScalar *x; 17348d0534beSBarry Smith 17358d0534beSBarry Smith PetscFunctionBegin; 17368d0534beSBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 17378d0534beSBarry Smith 17388d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1739d0f46423SBarry Smith ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 17408d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 17418d0534beSBarry Smith PetscFunctionReturn(0); 17428d0534beSBarry Smith } 17438d0534beSBarry Smith 1744289bc588SBarry Smith /* -------------------------------------------------------------------*/ 1745a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 1746905e6a2fSBarry Smith MatGetRow_SeqDense, 1747905e6a2fSBarry Smith MatRestoreRow_SeqDense, 1748905e6a2fSBarry Smith MatMult_SeqDense, 174997304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 17507c922b88SBarry Smith MatMultTranspose_SeqDense, 17517c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 1752db4efbfdSBarry Smith 0, 1753db4efbfdSBarry Smith 0, 1754db4efbfdSBarry Smith 0, 1755db4efbfdSBarry Smith /*10*/ 0, 1756905e6a2fSBarry Smith MatLUFactor_SeqDense, 1757905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 1758ec8511deSBarry Smith MatRelax_SeqDense, 1759ec8511deSBarry Smith MatTranspose_SeqDense, 176097304618SKris Buschelman /*15*/ MatGetInfo_SeqDense, 1761905e6a2fSBarry Smith MatEqual_SeqDense, 1762905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 1763905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 1764905e6a2fSBarry Smith MatNorm_SeqDense, 1765c0aa2d19SHong Zhang /*20*/ MatAssemblyBegin_SeqDense, 1766c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 1767905e6a2fSBarry Smith 0, 1768905e6a2fSBarry Smith MatSetOption_SeqDense, 1769905e6a2fSBarry Smith MatZeroEntries_SeqDense, 177097304618SKris Buschelman /*25*/ MatZeroRows_SeqDense, 1771db4efbfdSBarry Smith 0, 1772db4efbfdSBarry Smith 0, 1773db4efbfdSBarry Smith 0, 1774db4efbfdSBarry Smith 0, 177597304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqDense, 1776273d9f13SBarry Smith 0, 1777905e6a2fSBarry Smith 0, 1778905e6a2fSBarry Smith MatGetArray_SeqDense, 1779905e6a2fSBarry Smith MatRestoreArray_SeqDense, 178097304618SKris Buschelman /*35*/ MatDuplicate_SeqDense, 1781a5ae1ecdSBarry Smith 0, 1782a5ae1ecdSBarry Smith 0, 1783a5ae1ecdSBarry Smith 0, 1784a5ae1ecdSBarry Smith 0, 178597304618SKris Buschelman /*40*/ MatAXPY_SeqDense, 1786a5ae1ecdSBarry Smith MatGetSubMatrices_SeqDense, 1787a5ae1ecdSBarry Smith 0, 17884b0e389bSBarry Smith MatGetValues_SeqDense, 1789a5ae1ecdSBarry Smith MatCopy_SeqDense, 1790985db425SBarry Smith /*45*/ MatGetRowMax_SeqDense, 1791a5ae1ecdSBarry Smith MatScale_SeqDense, 1792a5ae1ecdSBarry Smith 0, 1793a5ae1ecdSBarry Smith 0, 1794a5ae1ecdSBarry Smith 0, 1795521d7252SBarry Smith /*50*/ 0, 1796a5ae1ecdSBarry Smith 0, 1797a5ae1ecdSBarry Smith 0, 1798a5ae1ecdSBarry Smith 0, 1799a5ae1ecdSBarry Smith 0, 180097304618SKris Buschelman /*55*/ 0, 1801a5ae1ecdSBarry Smith 0, 1802a5ae1ecdSBarry Smith 0, 1803a5ae1ecdSBarry Smith 0, 1804a5ae1ecdSBarry Smith 0, 180597304618SKris Buschelman /*60*/ 0, 1806e03a110bSBarry Smith MatDestroy_SeqDense, 1807e03a110bSBarry Smith MatView_SeqDense, 1808357abbc8SBarry Smith 0, 180997304618SKris Buschelman 0, 181097304618SKris Buschelman /*65*/ 0, 181197304618SKris Buschelman 0, 181297304618SKris Buschelman 0, 181397304618SKris Buschelman 0, 181497304618SKris Buschelman 0, 1815985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqDense, 181697304618SKris Buschelman 0, 181797304618SKris Buschelman 0, 181897304618SKris Buschelman 0, 181997304618SKris Buschelman 0, 182097304618SKris Buschelman /*75*/ 0, 182197304618SKris Buschelman 0, 182297304618SKris Buschelman 0, 182397304618SKris Buschelman 0, 182497304618SKris Buschelman 0, 182597304618SKris Buschelman /*80*/ 0, 182697304618SKris Buschelman 0, 182797304618SKris Buschelman 0, 182897304618SKris Buschelman 0, 1829865e5f61SKris Buschelman /*84*/ MatLoad_SeqDense, 1830865e5f61SKris Buschelman 0, 18311cbb95d3SBarry Smith MatIsHermitian_SeqDense, 1832865e5f61SKris Buschelman 0, 1833865e5f61SKris Buschelman 0, 1834865e5f61SKris Buschelman 0, 1835a9fe9ddaSSatish Balay /*90*/ MatMatMult_SeqDense_SeqDense, 1836a9fe9ddaSSatish Balay MatMatMultSymbolic_SeqDense_SeqDense, 1837a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 1838865e5f61SKris Buschelman 0, 1839865e5f61SKris Buschelman 0, 1840865e5f61SKris Buschelman /*95*/ 0, 1841a9fe9ddaSSatish Balay MatMatMultTranspose_SeqDense_SeqDense, 1842a9fe9ddaSSatish Balay MatMatMultTransposeSymbolic_SeqDense_SeqDense, 1843a9fe9ddaSSatish Balay MatMatMultTransposeNumeric_SeqDense_SeqDense, 1844284134d9SBarry Smith 0, 1845284134d9SBarry Smith /*100*/0, 1846284134d9SBarry Smith 0, 1847284134d9SBarry Smith 0, 1848284134d9SBarry Smith 0, 1849985db425SBarry Smith MatSetSizes_SeqDense, 1850985db425SBarry Smith 0, 1851985db425SBarry Smith 0, 1852985db425SBarry Smith 0, 1853985db425SBarry Smith 0, 1854985db425SBarry Smith 0, 1855985db425SBarry Smith /*110*/0, 1856985db425SBarry Smith 0, 18578d0534beSBarry Smith MatGetRowMin_SeqDense, 18588d0534beSBarry Smith MatGetColumnVector_SeqDense 1859985db425SBarry Smith }; 186090ace30eSBarry Smith 18614a2ae208SSatish Balay #undef __FUNCT__ 18624a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense" 18634b828684SBarry Smith /*@C 1864fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 1865d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 1866d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 1867289bc588SBarry Smith 1868db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1869db81eaa0SLois Curfman McInnes 187020563c6bSBarry Smith Input Parameters: 1871db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 18720c775827SLois Curfman McInnes . m - number of rows 187318f449edSLois Curfman McInnes . n - number of columns 1874db81eaa0SLois Curfman McInnes - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1875dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 187620563c6bSBarry Smith 187720563c6bSBarry Smith Output Parameter: 187844cd7ae7SLois Curfman McInnes . A - the matrix 187920563c6bSBarry Smith 1880b259b22eSLois Curfman McInnes Notes: 188118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 188218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1883b4fd4287SBarry Smith set data=PETSC_NULL. 188418f449edSLois Curfman McInnes 1885027ccd11SLois Curfman McInnes Level: intermediate 1886027ccd11SLois Curfman McInnes 1887dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS 1888d65003e9SLois Curfman McInnes 1889db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 189020563c6bSBarry Smith @*/ 1891be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 1892289bc588SBarry Smith { 1893dfbe8321SBarry Smith PetscErrorCode ierr; 18943b2fbd54SBarry Smith 18953a40ed3dSBarry Smith PetscFunctionBegin; 1896f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1897f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 1898273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1899273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1900273d9f13SBarry Smith PetscFunctionReturn(0); 1901273d9f13SBarry Smith } 1902273d9f13SBarry Smith 19034a2ae208SSatish Balay #undef __FUNCT__ 1904afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation" 1905273d9f13SBarry Smith /*@C 1906273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 1907273d9f13SBarry Smith 1908273d9f13SBarry Smith Collective on MPI_Comm 1909273d9f13SBarry Smith 1910273d9f13SBarry Smith Input Parameters: 1911273d9f13SBarry Smith + A - the matrix 1912273d9f13SBarry Smith - data - the array (or PETSC_NULL) 1913273d9f13SBarry Smith 1914273d9f13SBarry Smith Notes: 1915273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1916273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1917284134d9SBarry Smith need not call this routine. 1918273d9f13SBarry Smith 1919273d9f13SBarry Smith Level: intermediate 1920273d9f13SBarry Smith 1921273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS 1922273d9f13SBarry Smith 1923273d9f13SBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 1924273d9f13SBarry Smith @*/ 1925be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 1926273d9f13SBarry Smith { 1927dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar[]); 1928a23d5eceSKris Buschelman 1929a23d5eceSKris Buschelman PetscFunctionBegin; 1930a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1931a23d5eceSKris Buschelman if (f) { 1932a23d5eceSKris Buschelman ierr = (*f)(B,data);CHKERRQ(ierr); 1933a23d5eceSKris Buschelman } 1934a23d5eceSKris Buschelman PetscFunctionReturn(0); 1935a23d5eceSKris Buschelman } 1936a23d5eceSKris Buschelman 1937a23d5eceSKris Buschelman EXTERN_C_BEGIN 1938a23d5eceSKris Buschelman #undef __FUNCT__ 1939afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation_SeqDense" 1940be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 1941a23d5eceSKris Buschelman { 1942273d9f13SBarry Smith Mat_SeqDense *b; 1943dfbe8321SBarry Smith PetscErrorCode ierr; 1944273d9f13SBarry Smith 1945273d9f13SBarry Smith PetscFunctionBegin; 1946273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1947273d9f13SBarry Smith b = (Mat_SeqDense*)B->data; 1948d0f46423SBarry Smith if (b->lda <= 0) b->lda = B->rmap->n; 19499e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 19509e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 19515afd5e0cSBarry Smith ierr = PetscMalloc(b->lda*b->Nmax*sizeof(PetscScalar),&b->v);CHKERRQ(ierr); 1952284134d9SBarry Smith ierr = PetscMemzero(b->v,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 1953284134d9SBarry Smith ierr = PetscLogObjectMemory(B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 19549e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 1955273d9f13SBarry Smith } else { /* user-allocated storage */ 19569e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 1957273d9f13SBarry Smith b->v = data; 1958273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 1959273d9f13SBarry Smith } 1960273d9f13SBarry Smith PetscFunctionReturn(0); 1961273d9f13SBarry Smith } 1962a23d5eceSKris Buschelman EXTERN_C_END 1963273d9f13SBarry Smith 19641b807ce4Svictorle #undef __FUNCT__ 19651b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA" 19661b807ce4Svictorle /*@C 19671b807ce4Svictorle MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array 19681b807ce4Svictorle 19691b807ce4Svictorle Input parameter: 19701b807ce4Svictorle + A - the matrix 19711b807ce4Svictorle - lda - the leading dimension 19721b807ce4Svictorle 19731b807ce4Svictorle Notes: 19741b807ce4Svictorle This routine is to be used in conjunction with MatSeqDenseSetPreallocation; 19751b807ce4Svictorle it asserts that the preallocation has a leading dimension (the LDA parameter 19761b807ce4Svictorle of Blas and Lapack fame) larger than M, the first dimension of the matrix. 19771b807ce4Svictorle 19781b807ce4Svictorle Level: intermediate 19791b807ce4Svictorle 19801b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS 19811b807ce4Svictorle 1982284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize() 19831b807ce4Svictorle @*/ 1984be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat B,PetscInt lda) 19851b807ce4Svictorle { 19861b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 198721a2c019SBarry Smith 19881b807ce4Svictorle PetscFunctionBegin; 1989d0f46423SBarry Smith if (lda < B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n); 19901b807ce4Svictorle b->lda = lda; 199121a2c019SBarry Smith b->changelda = PETSC_FALSE; 199221a2c019SBarry Smith b->Mmax = PetscMax(b->Mmax,lda); 19931b807ce4Svictorle PetscFunctionReturn(0); 19941b807ce4Svictorle } 19951b807ce4Svictorle 19960bad9183SKris Buschelman /*MC 1997fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 19980bad9183SKris Buschelman 19990bad9183SKris Buschelman Options Database Keys: 20000bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 20010bad9183SKris Buschelman 20020bad9183SKris Buschelman Level: beginner 20030bad9183SKris Buschelman 200489665df3SBarry Smith .seealso: MatCreateSeqDense() 200589665df3SBarry Smith 20060bad9183SKris Buschelman M*/ 20070bad9183SKris Buschelman 2008273d9f13SBarry Smith EXTERN_C_BEGIN 20094a2ae208SSatish Balay #undef __FUNCT__ 20104a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense" 2011be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqDense(Mat B) 2012273d9f13SBarry Smith { 2013273d9f13SBarry Smith Mat_SeqDense *b; 2014dfbe8321SBarry Smith PetscErrorCode ierr; 20157c334f02SBarry Smith PetscMPIInt size; 2016273d9f13SBarry Smith 2017273d9f13SBarry Smith PetscFunctionBegin; 20187adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 201929bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 202055659b69SBarry Smith 2021d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = 1; 2022d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2023d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2024273d9f13SBarry Smith 202538f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqDense,&b);CHKERRQ(ierr); 2026549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 202790f02eecSBarry Smith B->mapping = 0; 202844cd7ae7SLois Curfman McInnes B->data = (void*)b; 202918f449edSLois Curfman McInnes 2030a5ae1ecdSBarry Smith 203144cd7ae7SLois Curfman McInnes b->pivots = 0; 2032273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2033273d9f13SBarry Smith b->v = 0; 2034d0f46423SBarry Smith b->lda = B->rmap->n; 203521a2c019SBarry Smith b->changelda = PETSC_FALSE; 2036d0f46423SBarry Smith b->Mmax = B->rmap->n; 2037d0f46423SBarry Smith b->Nmax = B->cmap->n; 20384e220ebcSLois Curfman McInnes 2039b24902e0SBarry Smith 2040b24902e0SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqdense_petsc_C", 2041b24902e0SBarry Smith "MatGetFactor_seqdense_petsc", 2042b24902e0SBarry Smith MatGetFactor_seqdense_petsc);CHKERRQ(ierr); 2043a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C", 2044a23d5eceSKris Buschelman "MatSeqDenseSetPreallocation_SeqDense", 2045a23d5eceSKris Buschelman MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 20464ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMult_seqaij_seqdense_C", 20474ae313f4SHong Zhang "MatMatMult_SeqAIJ_SeqDense", 20484ae313f4SHong Zhang MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 20494ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C", 20504ae313f4SHong Zhang "MatMatMultSymbolic_SeqAIJ_SeqDense", 20514ae313f4SHong Zhang MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 20524ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C", 20534ae313f4SHong Zhang "MatMatMultNumeric_SeqAIJ_SeqDense", 20544ae313f4SHong Zhang MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 205517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 20563a40ed3dSBarry Smith PetscFunctionReturn(0); 2057289bc588SBarry Smith } 2058c0aa2d19SHong Zhang 2059c0aa2d19SHong Zhang 2060273d9f13SBarry Smith EXTERN_C_END 2061