xref: /petsc/src/mat/impls/dense/seq/dense.c (revision cb4a9cd983ac3d290112a22799de943606cf2961)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
16ca15aa20SStefano Zampini   PetscErrorCode ierr;
178c178816SStefano Zampini 
188c178816SStefano Zampini   PetscFunctionBegin;
198c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
20ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
218c178816SStefano Zampini   if (!hermitian) {
228c178816SStefano Zampini     for (k=0;k<n;k++) {
238c178816SStefano Zampini       for (j=k;j<n;j++) {
24ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
258c178816SStefano Zampini       }
268c178816SStefano Zampini     }
278c178816SStefano Zampini   } else {
288c178816SStefano Zampini     for (k=0;k<n;k++) {
298c178816SStefano Zampini       for (j=k;j<n;j++) {
30ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
318c178816SStefano Zampini       }
328c178816SStefano Zampini     }
338c178816SStefano Zampini   }
34ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
358c178816SStefano Zampini   PetscFunctionReturn(0);
368c178816SStefano Zampini }
378c178816SStefano Zampini 
3805709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
398c178816SStefano Zampini {
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
5400121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
558c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
5600121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
57ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
588c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
598c178816SStefano Zampini     if (A->spd) {
6000121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
618c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
6200121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
638c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
648c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
658c178816SStefano Zampini     } else if (A->hermitian) {
668c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
678c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
6800121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
698c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7000121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
728c178816SStefano Zampini #endif
738c178816SStefano Zampini     } else { /* symmetric case */
748c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
758c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
7600121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
778c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
7800121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
798c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
808c178816SStefano Zampini     }
818c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
82ca15aa20SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
838c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
848c178816SStefano Zampini 
858c178816SStefano Zampini   A->ops->solve             = NULL;
868c178816SStefano Zampini   A->ops->matsolve          = NULL;
878c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
888c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
898c178816SStefano Zampini   A->ops->solveadd          = NULL;
908c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
918c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
928c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
938c178816SStefano Zampini   PetscFunctionReturn(0);
948c178816SStefano Zampini }
958c178816SStefano Zampini 
963f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
973f49a652SStefano Zampini {
983f49a652SStefano Zampini   PetscErrorCode    ierr;
993f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1003f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
101ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
1023f49a652SStefano Zampini   const PetscScalar *xx;
1033f49a652SStefano Zampini 
1043f49a652SStefano Zampini   PetscFunctionBegin;
10576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1063f49a652SStefano Zampini     for (i=0; i<N; i++) {
1073f49a652SStefano Zampini       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1083f49a652SStefano Zampini       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1093f49a652SStefano Zampini       if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1103f49a652SStefano Zampini     }
11176bd3646SJed Brown   }
112ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1133f49a652SStefano Zampini 
1143f49a652SStefano Zampini   /* fix right hand side if needed */
1153f49a652SStefano Zampini   if (x && b) {
1166c4d906cSStefano Zampini     Vec xt;
1176c4d906cSStefano Zampini 
1186c4d906cSStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1196c4d906cSStefano Zampini     ierr = VecDuplicate(x,&xt);CHKERRQ(ierr);
1206c4d906cSStefano Zampini     ierr = VecCopy(x,xt);CHKERRQ(ierr);
1216c4d906cSStefano Zampini     ierr = VecScale(xt,-1.0);CHKERRQ(ierr);
1226c4d906cSStefano Zampini     ierr = MatMultAdd(A,xt,b,b);CHKERRQ(ierr);
1236c4d906cSStefano Zampini     ierr = VecDestroy(&xt);CHKERRQ(ierr);
1243f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1253f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1263f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1273f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1283f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini 
131ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1323f49a652SStefano Zampini   for (i=0; i<N; i++) {
133ca15aa20SStefano Zampini     slot = v + rows[i]*m;
134580bdb30SBarry Smith     ierr = PetscArrayzero(slot,r);CHKERRQ(ierr);
1353f49a652SStefano Zampini   }
1363f49a652SStefano Zampini   for (i=0; i<N; i++) {
137ca15aa20SStefano Zampini     slot = v + rows[i];
1383f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1393f49a652SStefano Zampini   }
1403f49a652SStefano Zampini   if (diag != 0.0) {
1413f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1423f49a652SStefano Zampini     for (i=0; i<N; i++) {
143ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1443f49a652SStefano Zampini       *slot = diag;
1453f49a652SStefano Zampini     }
1463f49a652SStefano Zampini   }
147ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
1483f49a652SStefano Zampini   PetscFunctionReturn(0);
1493f49a652SStefano Zampini }
1503f49a652SStefano Zampini 
151abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
152abc3b08eSStefano Zampini {
153abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
154abc3b08eSStefano Zampini   PetscErrorCode ierr;
155abc3b08eSStefano Zampini 
156abc3b08eSStefano Zampini   PetscFunctionBegin;
157ca15aa20SStefano Zampini   if (c->ptapwork) {
158ca15aa20SStefano Zampini     ierr = (*C->ops->matmultnumeric)(A,P,c->ptapwork);CHKERRQ(ierr);
159ca15aa20SStefano Zampini     ierr = (*C->ops->transposematmultnumeric)(P,c->ptapwork,C);CHKERRQ(ierr);
1604222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
161abc3b08eSStefano Zampini   PetscFunctionReturn(0);
162abc3b08eSStefano Zampini }
163abc3b08eSStefano Zampini 
1644222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
165abc3b08eSStefano Zampini {
166abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1677a3c3d58SStefano Zampini   PetscBool      cisdense;
168abc3b08eSStefano Zampini   PetscErrorCode ierr;
169abc3b08eSStefano Zampini 
170abc3b08eSStefano Zampini   PetscFunctionBegin;
1714222ddf1SHong Zhang   ierr = MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N);CHKERRQ(ierr);
1727a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
1737a3c3d58SStefano Zampini   if (!cisdense) {
1747a3c3d58SStefano Zampini     PetscBool flg;
1757a3c3d58SStefano Zampini 
1767a3c3d58SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
1774222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
1787a3c3d58SStefano Zampini   }
1797a3c3d58SStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
1804222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
181ca15aa20SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork);CHKERRQ(ierr);
182ca15aa20SStefano Zampini   ierr = MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N);CHKERRQ(ierr);
1837a3c3d58SStefano Zampini   ierr = MatSetType(c->ptapwork,((PetscObject)C)->type_name);CHKERRQ(ierr);
1847a3c3d58SStefano Zampini   ierr = MatSetUp(c->ptapwork);CHKERRQ(ierr);
185abc3b08eSStefano Zampini   PetscFunctionReturn(0);
186abc3b08eSStefano Zampini }
187abc3b08eSStefano Zampini 
188cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
189b49cda9fSStefano Zampini {
190a13144ffSStefano Zampini   Mat             B = NULL;
191b49cda9fSStefano Zampini   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)A->data;
192b49cda9fSStefano Zampini   Mat_SeqDense    *b;
193b49cda9fSStefano Zampini   PetscErrorCode  ierr;
194b49cda9fSStefano Zampini   PetscInt        *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
1952e5835c6SStefano Zampini   const MatScalar *av;
196a13144ffSStefano Zampini   PetscBool       isseqdense;
197b49cda9fSStefano Zampini 
198b49cda9fSStefano Zampini   PetscFunctionBegin;
199a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
200a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
201a32993e3SJed Brown     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
202a13144ffSStefano Zampini   }
203a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
204b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
205b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
206b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
207b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
208b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
209a13144ffSStefano Zampini   } else {
210a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
211580bdb30SBarry Smith     ierr = PetscArrayzero(b->v,m*n);CHKERRQ(ierr);
212a13144ffSStefano Zampini   }
2132e5835c6SStefano Zampini   ierr = MatSeqAIJGetArrayRead(A,&av);CHKERRQ(ierr);
214b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
215b49cda9fSStefano Zampini     PetscInt j;
216b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
217b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
218b49cda9fSStefano Zampini       aj++;
219b49cda9fSStefano Zampini       av++;
220b49cda9fSStefano Zampini     }
221b49cda9fSStefano Zampini     ai++;
222b49cda9fSStefano Zampini   }
2232e5835c6SStefano Zampini   ierr = MatSeqAIJRestoreArrayRead(A,&av);CHKERRQ(ierr);
224b49cda9fSStefano Zampini 
225511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
226a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22828be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
229b49cda9fSStefano Zampini   } else {
230a13144ffSStefano Zampini     if (B) *newmat = B;
231a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233b49cda9fSStefano Zampini   }
234b49cda9fSStefano Zampini   PetscFunctionReturn(0);
235b49cda9fSStefano Zampini }
236b49cda9fSStefano Zampini 
237cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2386a63e612SBarry Smith {
2396d4ec7b0SPierre Jolivet   Mat            B = NULL;
2406a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2416a63e612SBarry Smith   PetscErrorCode ierr;
2429399e1b8SMatthew G. Knepley   PetscInt       i, j;
2439399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2449399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2456a63e612SBarry Smith 
2466a63e612SBarry Smith   PetscFunctionBegin;
2476d4ec7b0SPierre Jolivet   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2486d4ec7b0SPierre Jolivet   if (reuse != MAT_REUSE_MATRIX) {
249ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2506a63e612SBarry Smith     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2516a63e612SBarry Smith     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2529399e1b8SMatthew G. Knepley     for (j=0; j<A->cmap->n; j++) {
2536d4ec7b0SPierre Jolivet       for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i];
2546a63e612SBarry Smith       aa += a->lda;
2556a63e612SBarry Smith     }
2569399e1b8SMatthew G. Knepley     ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2576d4ec7b0SPierre Jolivet   } else B = *newmat;
2589399e1b8SMatthew G. Knepley   aa = a->v;
2599399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2609399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2616d4ec7b0SPierre Jolivet     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];}
2629399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2639399e1b8SMatthew G. Knepley     aa  += a->lda;
2649399e1b8SMatthew G. Knepley   }
2659399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2666a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2676a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2686a63e612SBarry Smith 
269511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
27028be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2716d4ec7b0SPierre Jolivet   } else if (reuse != MAT_REUSE_MATRIX) *newmat = B;
2726a63e612SBarry Smith   PetscFunctionReturn(0);
2736a63e612SBarry Smith }
2746a63e612SBarry Smith 
275ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2761987afe7SBarry Smith {
2771987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
278ca15aa20SStefano Zampini   const PetscScalar *xv;
279ca15aa20SStefano Zampini   PetscScalar       *yv;
28023fff9afSBarry Smith   PetscBLASInt      N,m,ldax = 0,lday = 0,one = 1;
281efee365bSSatish Balay   PetscErrorCode    ierr;
2823a40ed3dSBarry Smith 
2833a40ed3dSBarry Smith   PetscFunctionBegin;
284ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(X,&xv);CHKERRQ(ierr);
285ca15aa20SStefano Zampini   ierr = MatDenseGetArray(Y,&yv);CHKERRQ(ierr);
286c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
287c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
288c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
289c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
290a5ce6ee0Svictorle   if (ldax>m || lday>m) {
291ca15aa20SStefano Zampini     PetscInt j;
292ca15aa20SStefano Zampini 
293d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
294ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
295a5ce6ee0Svictorle     }
296a5ce6ee0Svictorle   } else {
297ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
298a5ce6ee0Svictorle   }
299ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(X,&xv);CHKERRQ(ierr);
300ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(Y,&yv);CHKERRQ(ierr);
301ca0c957dSBarry Smith   ierr = PetscLogFlops(PetscMax(2.0*N-1,0));CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3031987afe7SBarry Smith }
3041987afe7SBarry Smith 
305e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
306289bc588SBarry Smith {
307ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3083a40ed3dSBarry Smith 
3093a40ed3dSBarry Smith   PetscFunctionBegin;
3104e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
311ca15aa20SStefano Zampini   info->nz_allocated      = N;
312ca15aa20SStefano Zampini   info->nz_used           = N;
313ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
314ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3154e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3167adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3174e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3184e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3194e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3203a40ed3dSBarry Smith   PetscFunctionReturn(0);
321289bc588SBarry Smith }
322289bc588SBarry Smith 
323637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
32480cd9d93SLois Curfman McInnes {
325273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
326ca15aa20SStefano Zampini   PetscScalar    *v;
327efee365bSSatish Balay   PetscErrorCode ierr;
32823fff9afSBarry Smith   PetscBLASInt   one = 1,j,nz,lda = 0;
32980cd9d93SLois Curfman McInnes 
3303a40ed3dSBarry Smith   PetscFunctionBegin;
331ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
332c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
333d0f46423SBarry Smith   if (lda>A->rmap->n) {
334c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
335d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
336ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
337a5ce6ee0Svictorle     }
338a5ce6ee0Svictorle   } else {
339c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
340ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
341a5ce6ee0Svictorle   }
342efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
343ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
3443a40ed3dSBarry Smith   PetscFunctionReturn(0);
34580cd9d93SLois Curfman McInnes }
34680cd9d93SLois Curfman McInnes 
347e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3481cbb95d3SBarry Smith {
3491cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
350ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
351ca15aa20SStefano Zampini   const PetscScalar *v;
352ca15aa20SStefano Zampini   PetscErrorCode    ierr;
3531cbb95d3SBarry Smith 
3541cbb95d3SBarry Smith   PetscFunctionBegin;
3551cbb95d3SBarry Smith   *fl = PETSC_FALSE;
356d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
357ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
3581cbb95d3SBarry Smith   for (i=0; i<m; i++) {
359ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
360637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
361637a0070SStefano Zampini         goto restore;
3621cbb95d3SBarry Smith       }
3631cbb95d3SBarry Smith     }
364637a0070SStefano Zampini   }
3651cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
366637a0070SStefano Zampini restore:
367637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
368637a0070SStefano Zampini   PetscFunctionReturn(0);
369637a0070SStefano Zampini }
370637a0070SStefano Zampini 
371637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
372637a0070SStefano Zampini {
373637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
374637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
375637a0070SStefano Zampini   const PetscScalar *v;
376637a0070SStefano Zampini   PetscErrorCode    ierr;
377637a0070SStefano Zampini 
378637a0070SStefano Zampini   PetscFunctionBegin;
379637a0070SStefano Zampini   *fl = PETSC_FALSE;
380637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
381637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
382637a0070SStefano Zampini   for (i=0; i<m; i++) {
383637a0070SStefano Zampini     for (j=i; j<m; j++) {
384637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
385637a0070SStefano Zampini         goto restore;
386637a0070SStefano Zampini       }
387637a0070SStefano Zampini     }
388637a0070SStefano Zampini   }
389637a0070SStefano Zampini   *fl  = PETSC_TRUE;
390637a0070SStefano Zampini restore:
391637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
3921cbb95d3SBarry Smith   PetscFunctionReturn(0);
3931cbb95d3SBarry Smith }
3941cbb95d3SBarry Smith 
395ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
396b24902e0SBarry Smith {
397ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
398b24902e0SBarry Smith   PetscErrorCode ierr;
39923fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
400b24902e0SBarry Smith 
401b24902e0SBarry Smith   PetscFunctionBegin;
402aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
403aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
40423fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
40523fc5dcaSStefano Zampini     ierr = MatDenseSetLDA(newi,lda);CHKERRQ(ierr);
40623fc5dcaSStefano Zampini   }
4070298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
408b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
409ca15aa20SStefano Zampini     const PetscScalar *av;
410ca15aa20SStefano Zampini     PetscScalar       *v;
411ca15aa20SStefano Zampini 
412ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
413ca15aa20SStefano Zampini     ierr = MatDenseGetArray(newi,&v);CHKERRQ(ierr);
41423fc5dcaSStefano Zampini     ierr = MatDenseGetLDA(newi,&nlda);CHKERRQ(ierr);
415d0f46423SBarry Smith     m    = A->rmap->n;
41623fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
417d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
41823fc5dcaSStefano Zampini         ierr = PetscArraycpy(v+j*nlda,av+j*lda,m);CHKERRQ(ierr);
419b24902e0SBarry Smith       }
420b24902e0SBarry Smith     } else {
421ca15aa20SStefano Zampini       ierr = PetscArraycpy(v,av,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
422b24902e0SBarry Smith     }
423ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(newi,&v);CHKERRQ(ierr);
424ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
425b24902e0SBarry Smith   }
426b24902e0SBarry Smith   PetscFunctionReturn(0);
427b24902e0SBarry Smith }
428b24902e0SBarry Smith 
429ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
43002cad45dSBarry Smith {
4316849ba73SBarry Smith   PetscErrorCode ierr;
43202cad45dSBarry Smith 
4333a40ed3dSBarry Smith   PetscFunctionBegin;
434ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
435d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
4365c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
437719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
438b24902e0SBarry Smith   PetscFunctionReturn(0);
439b24902e0SBarry Smith }
440b24902e0SBarry Smith 
4414396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
442289bc588SBarry Smith {
443c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4444396437dSToby Isaac   PetscBLASInt    info;
4456849ba73SBarry Smith   PetscErrorCode  ierr;
44667e560aaSBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
44800121966SStefano Zampini   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4494396437dSToby Isaac   PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
45000121966SStefano Zampini   ierr = PetscFPTrapPop();CHKERRQ(ierr);
45185e2c93fSHong Zhang   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
4524905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4534396437dSToby Isaac   PetscFunctionReturn(0);
4544396437dSToby Isaac }
4554396437dSToby Isaac 
4564396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat);
4574396437dSToby Isaac 
4584396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
4594396437dSToby Isaac {
4604396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4614396437dSToby Isaac   PetscBLASInt    info;
4624396437dSToby Isaac   PetscErrorCode  ierr;
4634396437dSToby Isaac 
4644396437dSToby Isaac   PetscFunctionBegin;
465a49dc2a2SStefano Zampini   if (A->spd) {
4664396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
46700121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
4688b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
46900121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
47085e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
4714396437dSToby Isaac     if (PetscDefined(USE_COMPLEX) && T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
472a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
473a49dc2a2SStefano Zampini   } else if (A->hermitian) {
4744396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
47500121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
476a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
47700121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
478a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
4794396437dSToby Isaac     if (T) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
480a49dc2a2SStefano Zampini #endif
481a49dc2a2SStefano Zampini   } else { /* symmetric case */
48200121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
483a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
48400121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
485a49dc2a2SStefano Zampini     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
486a49dc2a2SStefano Zampini   }
4874905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
4884396437dSToby Isaac   PetscFunctionReturn(0);
4894396437dSToby Isaac }
49085e2c93fSHong Zhang 
4914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
4924396437dSToby Isaac {
4934396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4944396437dSToby Isaac   PetscBLASInt    info;
4954396437dSToby Isaac   char            trans;
4964396437dSToby Isaac   PetscErrorCode  ierr;
4974396437dSToby Isaac 
4984396437dSToby Isaac   PetscFunctionBegin;
4994905a7bcSToby Isaac   if (PetscDefined(USE_COMPLEX)) {
5004905a7bcSToby Isaac     trans = 'C';
5014905a7bcSToby Isaac   } else {
5024905a7bcSToby Isaac     trans = 'T';
5034905a7bcSToby Isaac   }
5044905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5054905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5064905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5074905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5084905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5094905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5104905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
5114905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5124905a7bcSToby Isaac   for (PetscInt j = 0; j < nrhs; j++) {
5134905a7bcSToby Isaac     for (PetscInt i = mat->rank; i < k; i++) {
5144905a7bcSToby Isaac       x[j*xlda + i] = 0.;
5154905a7bcSToby Isaac     }
5164905a7bcSToby Isaac   }
5174905a7bcSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5184905a7bcSToby Isaac   PetscFunctionReturn(0);
5194905a7bcSToby Isaac }
5204905a7bcSToby Isaac 
5214396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt xlda, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
5224905a7bcSToby Isaac {
5234396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
5244396437dSToby Isaac   PetscBLASInt      info;
5254905a7bcSToby Isaac   PetscErrorCode    ierr;
5264396437dSToby Isaac 
5274396437dSToby Isaac   PetscFunctionBegin;
5284396437dSToby Isaac   if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) {
5294396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5304396437dSToby Isaac     PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&xlda,&info));
5314396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5324396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5334396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5344396437dSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
5354396437dSToby Isaac     PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&xlda,mat->fwork,&mat->lfwork,&info));
5364396437dSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
5374396437dSToby Isaac     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5384396437dSToby Isaac     if (PetscDefined(USE_COMPLEX)) {ierr = MatConjugate_SeqDense(A);CHKERRQ(ierr);}
5394396437dSToby Isaac   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve");
5404396437dSToby Isaac   ierr = PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank)));CHKERRQ(ierr);
5414396437dSToby Isaac   PetscFunctionReturn(0);
5424396437dSToby Isaac }
5434396437dSToby Isaac 
5444396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5454396437dSToby Isaac {
5464396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense *) A->data;
5474905a7bcSToby Isaac   PetscScalar       *y;
5484905a7bcSToby Isaac   PetscBLASInt      m=0, k=0;
5494396437dSToby Isaac   PetscErrorCode    ierr;
5504905a7bcSToby Isaac 
5514905a7bcSToby Isaac   PetscFunctionBegin;
5524905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
5534905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
5544905a7bcSToby Isaac   if (k < m) {
5554396437dSToby Isaac     ierr = VecCopy(xx, mat->qrrhs);CHKERRQ(ierr);
5564396437dSToby Isaac     ierr = VecGetArray(mat->qrrhs,&y);CHKERRQ(ierr);
5574905a7bcSToby Isaac   } else {
5584396437dSToby Isaac     ierr = VecCopy(xx, yy);CHKERRQ(ierr);
5594905a7bcSToby Isaac     ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
5604905a7bcSToby Isaac   }
5614396437dSToby Isaac   *_y = y;
5624396437dSToby Isaac   *_k = k;
5634396437dSToby Isaac   *_m = m;
5644396437dSToby Isaac   PetscFunctionReturn(0);
5654396437dSToby Isaac }
5664396437dSToby Isaac 
5674396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5684396437dSToby Isaac {
5694396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
57042e9364cSSatish Balay   PetscScalar    *y = NULL;
5714396437dSToby Isaac   PetscBLASInt   m, k;
5724396437dSToby Isaac   PetscErrorCode ierr;
5734396437dSToby Isaac 
5744396437dSToby Isaac   PetscFunctionBegin;
5754396437dSToby Isaac   y   = *_y;
5764396437dSToby Isaac   *_y = NULL;
5774396437dSToby Isaac   k   = *_k;
5784396437dSToby Isaac   m   = *_m;
5794905a7bcSToby Isaac   if (k < m) {
5804905a7bcSToby Isaac     PetscScalar *yv;
5814905a7bcSToby Isaac     ierr = VecGetArray(yy,&yv);CHKERRQ(ierr);
5824905a7bcSToby Isaac     ierr = PetscArraycpy(yv, y, k);CHKERRQ(ierr);
5834905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&yv);CHKERRQ(ierr);
5844396437dSToby Isaac     ierr = VecRestoreArray(mat->qrrhs, &y);CHKERRQ(ierr);
5854905a7bcSToby Isaac   } else {
5864905a7bcSToby Isaac     ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
5874905a7bcSToby Isaac   }
5884905a7bcSToby Isaac   PetscFunctionReturn(0);
5894905a7bcSToby Isaac }
5904905a7bcSToby Isaac 
5914396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy)
5924396437dSToby Isaac {
59342e9364cSSatish Balay   PetscScalar    *y = NULL;
59442e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
5954396437dSToby Isaac   PetscErrorCode ierr;
5964396437dSToby Isaac 
5974396437dSToby Isaac   PetscFunctionBegin;
5984396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
5994396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6004396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6014396437dSToby Isaac   PetscFunctionReturn(0);
6024396437dSToby Isaac }
6034396437dSToby Isaac 
6044396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy)
6054396437dSToby Isaac {
60642e9364cSSatish Balay   PetscScalar    *y = NULL;
60742e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6084396437dSToby Isaac   PetscErrorCode ierr;
6094396437dSToby Isaac 
6104396437dSToby Isaac   PetscFunctionBegin;
6114396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6124396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6134396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6144396437dSToby Isaac   PetscFunctionReturn(0);
6154396437dSToby Isaac }
6164396437dSToby Isaac 
6174396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6184396437dSToby Isaac {
619e54beecaSStefano Zampini   PetscScalar    *y = NULL;
620e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6214396437dSToby Isaac   PetscErrorCode ierr;
6224396437dSToby Isaac 
6234396437dSToby Isaac   PetscFunctionBegin;
6244396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6254396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE);CHKERRQ(ierr);
6264396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6274396437dSToby Isaac   PetscFunctionReturn(0);
6284396437dSToby Isaac }
6294396437dSToby Isaac 
6304396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6314396437dSToby Isaac {
632e54beecaSStefano Zampini   PetscScalar    *y = NULL;
633e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6344396437dSToby Isaac   PetscErrorCode ierr;
6354396437dSToby Isaac 
6364396437dSToby Isaac   PetscFunctionBegin;
6374396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6384396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE);CHKERRQ(ierr);
6394396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6404396437dSToby Isaac   PetscFunctionReturn(0);
6414396437dSToby Isaac }
6424396437dSToby Isaac 
6434396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy)
6444396437dSToby Isaac {
645e54beecaSStefano Zampini   PetscScalar    *y = NULL;
646e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6474396437dSToby Isaac   PetscErrorCode ierr;
6484396437dSToby Isaac 
6494396437dSToby Isaac   PetscFunctionBegin;
6504396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6514396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6524396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6534396437dSToby Isaac   PetscFunctionReturn(0);
6544396437dSToby Isaac }
6554396437dSToby Isaac 
6564396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy)
6574396437dSToby Isaac {
65842e9364cSSatish Balay   PetscScalar    *y = NULL;
65942e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6604396437dSToby Isaac   PetscErrorCode ierr;
6614396437dSToby Isaac 
6624396437dSToby Isaac   PetscFunctionBegin;
6634396437dSToby Isaac   ierr = MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6644396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k);CHKERRQ(ierr);
6654396437dSToby Isaac   ierr = MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k);CHKERRQ(ierr);
6664396437dSToby Isaac   PetscFunctionReturn(0);
6674396437dSToby Isaac }
6684396437dSToby Isaac 
6694396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
6704905a7bcSToby Isaac {
6714905a7bcSToby Isaac   PetscErrorCode    ierr;
6724905a7bcSToby Isaac   const PetscScalar *b;
6734396437dSToby Isaac   PetscScalar       *y;
6744905a7bcSToby Isaac   PetscInt          n, _blda, _xlda;
6754396437dSToby Isaac   PetscBLASInt      nrhs=0,m=0,k=0,blda=0,xlda=0,ylda=0;
6764905a7bcSToby Isaac 
6774905a7bcSToby Isaac   PetscFunctionBegin;
67837b8ee88SJose E. Roman   *_ylda=0; *_m=0; *_nrhs=0; *_k=0;
6794905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
6804905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
6814905a7bcSToby Isaac   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
6824905a7bcSToby Isaac   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
6834905a7bcSToby Isaac   ierr = MatDenseGetLDA(B,&_blda);CHKERRQ(ierr);
6844905a7bcSToby Isaac   ierr = PetscBLASIntCast(_blda, &blda);CHKERRQ(ierr);
6854905a7bcSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
6864905a7bcSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
6874905a7bcSToby Isaac   if (xlda < m) {
6884396437dSToby Isaac     ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
6894396437dSToby Isaac     ierr = PetscMalloc1(nrhs * m, &y);CHKERRQ(ierr);
6904905a7bcSToby Isaac     if (blda == m) {
6914396437dSToby Isaac       ierr = PetscArraycpy(y,b,blda*nrhs);CHKERRQ(ierr);
6924905a7bcSToby Isaac     } else {
6934905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
6944396437dSToby Isaac         ierr = PetscArraycpy(&y[j*m],&b[j*blda],m);CHKERRQ(ierr);
6954905a7bcSToby Isaac       }
6964905a7bcSToby Isaac     }
6974396437dSToby Isaac     ylda = m;
6984396437dSToby Isaac     ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
6994905a7bcSToby Isaac   } else {
7004905a7bcSToby Isaac     if (blda == xlda) {
7014396437dSToby Isaac       ierr = MatCopy(B, X, SAME_NONZERO_PATTERN);CHKERRQ(ierr);
7024396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7034905a7bcSToby Isaac     } else {
7044396437dSToby Isaac       ierr = MatDenseGetArray(X,&y);CHKERRQ(ierr);
7054396437dSToby Isaac       ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
7064905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
7074396437dSToby Isaac         ierr = PetscArraycpy(&y[j*xlda],&b[j*blda],m);CHKERRQ(ierr);
7084905a7bcSToby Isaac       }
7094396437dSToby Isaac       ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
7104905a7bcSToby Isaac     }
7114396437dSToby Isaac     ylda = xlda;
7124905a7bcSToby Isaac   }
7134396437dSToby Isaac   *_y    = y;
7144396437dSToby Isaac   *_ylda = ylda;
7154396437dSToby Isaac   *_k    = k;
7164396437dSToby Isaac   *_m    = m;
7174396437dSToby Isaac   *_nrhs = nrhs;
7184396437dSToby Isaac   PetscFunctionReturn(0);
7194396437dSToby Isaac }
7204396437dSToby Isaac 
7214396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ylda, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
7224396437dSToby Isaac {
7234396437dSToby Isaac   PetscScalar       *y;
7244396437dSToby Isaac   PetscInt          _xlda;
7254396437dSToby Isaac   PetscBLASInt      k,ylda,nrhs,xlda=0;
7264396437dSToby Isaac   PetscErrorCode    ierr;
7274396437dSToby Isaac 
7284396437dSToby Isaac   PetscFunctionBegin;
7294396437dSToby Isaac   y    = *_y;
7304396437dSToby Isaac   *_y  = NULL;
7314396437dSToby Isaac   k    = *_k;
7324396437dSToby Isaac   ylda = *_ylda;
7334396437dSToby Isaac   nrhs = *_nrhs;
7344396437dSToby Isaac   ierr = MatDenseGetLDA(X,&_xlda);CHKERRQ(ierr);
7354396437dSToby Isaac   ierr = PetscBLASIntCast(_xlda, &xlda);CHKERRQ(ierr);
7364396437dSToby Isaac   if (xlda != ylda) {
7374905a7bcSToby Isaac     PetscScalar *xv;
7384905a7bcSToby Isaac     ierr = MatDenseGetArray(X,&xv);CHKERRQ(ierr);
7394905a7bcSToby Isaac     for (PetscInt j = 0; j < nrhs; j++) {
7404396437dSToby Isaac       ierr = PetscArraycpy(&xv[j*xlda],&y[j*ylda],k);CHKERRQ(ierr);
7414905a7bcSToby Isaac     }
7424905a7bcSToby Isaac     ierr = MatDenseRestoreArray(X,&xv);CHKERRQ(ierr);
7434396437dSToby Isaac     ierr = PetscFree(y);CHKERRQ(ierr);
7444905a7bcSToby Isaac   } else {
7454396437dSToby Isaac     ierr = MatDenseRestoreArray(X,&y);CHKERRQ(ierr);
7464905a7bcSToby Isaac   }
74785e2c93fSHong Zhang   PetscFunctionReturn(0);
74885e2c93fSHong Zhang }
74985e2c93fSHong Zhang 
7504396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X)
7514396437dSToby Isaac {
7524396437dSToby Isaac   PetscScalar    *y;
7534396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7544396437dSToby Isaac   PetscErrorCode ierr;
7554396437dSToby Isaac 
7564396437dSToby Isaac   PetscFunctionBegin;
7574396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7584396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7594396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7604396437dSToby Isaac   PetscFunctionReturn(0);
7614396437dSToby Isaac }
7624396437dSToby Isaac 
7634396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X)
7644396437dSToby Isaac {
7654396437dSToby Isaac   PetscScalar    *y;
7664396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7674396437dSToby Isaac   PetscErrorCode ierr;
7684396437dSToby Isaac 
7694396437dSToby Isaac   PetscFunctionBegin;
7704396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7714396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_LU(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7724396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7734396437dSToby Isaac   PetscFunctionReturn(0);
7744396437dSToby Isaac }
7754396437dSToby Isaac 
7764396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7774396437dSToby Isaac {
7784396437dSToby Isaac   PetscScalar    *y;
7794396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7804396437dSToby Isaac   PetscErrorCode ierr;
7814396437dSToby Isaac 
7824396437dSToby Isaac   PetscFunctionBegin;
7834396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7844396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_FALSE);CHKERRQ(ierr);
7854396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7864396437dSToby Isaac   PetscFunctionReturn(0);
7874396437dSToby Isaac }
7884396437dSToby Isaac 
7894396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7904396437dSToby Isaac {
7914396437dSToby Isaac   PetscScalar    *y;
7924396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
7934396437dSToby Isaac   PetscErrorCode ierr;
7944396437dSToby Isaac 
7954396437dSToby Isaac   PetscFunctionBegin;
7964396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7974396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_Cholesky(A, y, ylda, m, nrhs, k, PETSC_TRUE);CHKERRQ(ierr);
7984396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
7994396437dSToby Isaac   PetscFunctionReturn(0);
8004396437dSToby Isaac }
8014396437dSToby Isaac 
8024396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X)
8034396437dSToby Isaac {
8044396437dSToby Isaac   PetscScalar    *y;
8054396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8064396437dSToby Isaac   PetscErrorCode ierr;
8074396437dSToby Isaac 
8084396437dSToby Isaac   PetscFunctionBegin;
8094396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8104396437dSToby Isaac   ierr = MatSolve_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8114396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8124396437dSToby Isaac   PetscFunctionReturn(0);
8134396437dSToby Isaac }
8144396437dSToby Isaac 
8154396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X)
8164396437dSToby Isaac {
8174396437dSToby Isaac   PetscScalar    *y;
8184396437dSToby Isaac   PetscBLASInt   m, k, ylda, nrhs;
8194396437dSToby Isaac   PetscErrorCode ierr;
8204396437dSToby Isaac 
8214396437dSToby Isaac   PetscFunctionBegin;
8224396437dSToby Isaac   ierr = MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8234396437dSToby Isaac   ierr = MatSolveTranspose_SeqDense_Internal_QR(A, y, ylda, m, nrhs, k);CHKERRQ(ierr);
8244396437dSToby Isaac   ierr = MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ylda, &m, &nrhs, &k);CHKERRQ(ierr);
8254396437dSToby Isaac   PetscFunctionReturn(0);
8264396437dSToby Isaac }
8274396437dSToby Isaac 
82800121966SStefano Zampini static PetscErrorCode MatConjugate_SeqDense(Mat);
82900121966SStefano Zampini 
830db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
831db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
832db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
833ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
834db4efbfdSBarry Smith {
835db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
836db4efbfdSBarry Smith   PetscErrorCode ierr;
837db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
838db4efbfdSBarry Smith 
839db4efbfdSBarry Smith   PetscFunctionBegin;
840c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
841c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
842db4efbfdSBarry Smith   if (!mat->pivots) {
8438208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
8443bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
845db4efbfdSBarry Smith   }
846db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
8478e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
8488b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
8498e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
8508e57ea43SSatish Balay 
851e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
852e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
8538208b9aeSStefano Zampini 
8544396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_LU;
8554396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_LU;
8564396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8574396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU;
858d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
859db4efbfdSBarry Smith 
860f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
861f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
862f6224b95SHong Zhang 
863dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
864db4efbfdSBarry Smith   PetscFunctionReturn(0);
865db4efbfdSBarry Smith }
866db4efbfdSBarry Smith 
8674396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
8684396437dSToby Isaac {
8694396437dSToby Isaac   MatFactorInfo  info;
8704396437dSToby Isaac   PetscErrorCode ierr;
8714396437dSToby Isaac 
8724396437dSToby Isaac   PetscFunctionBegin;
8734396437dSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
8744396437dSToby Isaac   ierr = (*fact->ops->lufactor)(fact,NULL,NULL,&info);CHKERRQ(ierr);
8754396437dSToby Isaac   PetscFunctionReturn(0);
8764396437dSToby Isaac }
8774396437dSToby Isaac 
8784396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
8794396437dSToby Isaac {
8804396437dSToby Isaac   PetscFunctionBegin;
8814396437dSToby Isaac   fact->preallocated           = PETSC_TRUE;
8824396437dSToby Isaac   fact->assembled              = PETSC_TRUE;
8834396437dSToby Isaac   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
8844396437dSToby Isaac   fact->ops->solve             = MatSolve_SeqDense_LU;
8854396437dSToby Isaac   fact->ops->matsolve          = MatMatSolve_SeqDense_LU;
8864396437dSToby Isaac   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8874396437dSToby Isaac   PetscFunctionReturn(0);
8884396437dSToby Isaac }
8894396437dSToby Isaac 
890a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
891ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
892db4efbfdSBarry Smith {
893db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
894db4efbfdSBarry Smith   PetscErrorCode ierr;
895c5df96a5SBarry Smith   PetscBLASInt   info,n;
896db4efbfdSBarry Smith 
897db4efbfdSBarry Smith   PetscFunctionBegin;
898c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
899db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
900a49dc2a2SStefano Zampini   if (A->spd) {
90100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
9028b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
90300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
904a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
905a49dc2a2SStefano Zampini   } else if (A->hermitian) {
906a49dc2a2SStefano Zampini     if (!mat->pivots) {
907a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
908a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
909a49dc2a2SStefano Zampini     }
910a49dc2a2SStefano Zampini     if (!mat->fwork) {
911a49dc2a2SStefano Zampini       PetscScalar dummy;
912a49dc2a2SStefano Zampini 
913a49dc2a2SStefano Zampini       mat->lfwork = -1;
91400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
915a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
91600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
917a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
918a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
919a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
920a49dc2a2SStefano Zampini     }
92100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
922a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
92300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
924a49dc2a2SStefano Zampini #endif
925a49dc2a2SStefano Zampini   } else { /* symmetric case */
926a49dc2a2SStefano Zampini     if (!mat->pivots) {
927a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
928a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
929a49dc2a2SStefano Zampini     }
930a49dc2a2SStefano Zampini     if (!mat->fwork) {
931a49dc2a2SStefano Zampini       PetscScalar dummy;
932a49dc2a2SStefano Zampini 
933a49dc2a2SStefano Zampini       mat->lfwork = -1;
93400121966SStefano Zampini       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
935a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
93600121966SStefano Zampini       ierr = PetscFPTrapPop();CHKERRQ(ierr);
937a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
938a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
939a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
940a49dc2a2SStefano Zampini     }
94100121966SStefano Zampini     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
942a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
94300121966SStefano Zampini     ierr = PetscFPTrapPop();CHKERRQ(ierr);
944a49dc2a2SStefano Zampini   }
945e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
9468208b9aeSStefano Zampini 
9474396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_Cholesky;
9484396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_Cholesky;
9494396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_Cholesky;
9504396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky;
951d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
9522205254eSKarl Rupp 
953f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
954f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
955f6224b95SHong Zhang 
956eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
957db4efbfdSBarry Smith   PetscFunctionReturn(0);
958db4efbfdSBarry Smith }
959db4efbfdSBarry Smith 
9604396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
961db4efbfdSBarry Smith {
962db4efbfdSBarry Smith   PetscErrorCode ierr;
963db4efbfdSBarry Smith   MatFactorInfo  info;
964db4efbfdSBarry Smith 
965db4efbfdSBarry Smith   PetscFunctionBegin;
966db4efbfdSBarry Smith   info.fill = 1.0;
9672205254eSKarl Rupp 
968c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
969f4259b30SLisandro Dalcin   ierr = (*fact->ops->choleskyfactor)(fact,NULL,&info);CHKERRQ(ierr);
970db4efbfdSBarry Smith   PetscFunctionReturn(0);
971db4efbfdSBarry Smith }
972db4efbfdSBarry Smith 
973ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
974db4efbfdSBarry Smith {
975db4efbfdSBarry Smith   PetscFunctionBegin;
976c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
9771bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
978719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
9794396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_Cholesky;
9804396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_Cholesky;
9814396437dSToby Isaac   fact->ops->solvetranspose        = MatSolve_SeqDense_Cholesky;
982db4efbfdSBarry Smith   PetscFunctionReturn(0);
983db4efbfdSBarry Smith }
984db4efbfdSBarry Smith 
9854905a7bcSToby Isaac static PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo)
9864905a7bcSToby Isaac {
9874905a7bcSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9884905a7bcSToby Isaac   PetscErrorCode ierr;
9894905a7bcSToby Isaac   PetscBLASInt   n,m,info, min, max;
9904905a7bcSToby Isaac 
9914905a7bcSToby Isaac   PetscFunctionBegin;
9924905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
9934905a7bcSToby Isaac   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
9944396437dSToby Isaac   max = PetscMax(m, n);
9954396437dSToby Isaac   min = PetscMin(m, n);
9964905a7bcSToby Isaac   if (!mat->tau) {
9974396437dSToby Isaac     ierr = PetscMalloc1(min,&mat->tau);CHKERRQ(ierr);
9984396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar));CHKERRQ(ierr);
9994396437dSToby Isaac   }
10004396437dSToby Isaac   if (!mat->pivots) {
10014396437dSToby Isaac     ierr = PetscMalloc1(m,&mat->pivots);CHKERRQ(ierr);
10024396437dSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscScalar));CHKERRQ(ierr);
10034396437dSToby Isaac   }
10044396437dSToby Isaac   if (!mat->qrrhs) {
10054396437dSToby Isaac     ierr = MatCreateVecs(A, NULL, &(mat->qrrhs));CHKERRQ(ierr);
10064905a7bcSToby Isaac   }
10074905a7bcSToby Isaac   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
10084905a7bcSToby Isaac   if (!mat->fwork) {
10094905a7bcSToby Isaac     PetscScalar dummy;
10104905a7bcSToby Isaac 
10114905a7bcSToby Isaac     mat->lfwork = -1;
10124905a7bcSToby Isaac     ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10134905a7bcSToby Isaac     PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info));
10144905a7bcSToby Isaac     ierr = PetscFPTrapPop();CHKERRQ(ierr);
10154905a7bcSToby Isaac     mat->lfwork = (PetscInt)PetscRealPart(dummy);
10164905a7bcSToby Isaac     ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
10174905a7bcSToby Isaac     ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
10184905a7bcSToby Isaac   }
10194905a7bcSToby Isaac   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
10204905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info));
10214905a7bcSToby Isaac   ierr = PetscFPTrapPop();CHKERRQ(ierr);
10224905a7bcSToby Isaac   if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization");
10234905a7bcSToby Isaac   // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR.  For now just say rank is min of m and n
10244905a7bcSToby Isaac   mat->rank = min;
10254905a7bcSToby Isaac 
10264396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_QR;
10274396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_QR;
10284905a7bcSToby Isaac   A->factortype             = MAT_FACTOR_QR;
10294905a7bcSToby Isaac   if (m == n) {
10304396437dSToby Isaac     A->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10314396437dSToby Isaac     A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10324905a7bcSToby Isaac   }
10334905a7bcSToby Isaac 
10344905a7bcSToby Isaac   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
10354905a7bcSToby Isaac   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
10364905a7bcSToby Isaac 
10374905a7bcSToby Isaac   ierr = PetscLogFlops(2.0*min*min*(max-min/3.0));CHKERRQ(ierr);
10384905a7bcSToby Isaac   PetscFunctionReturn(0);
10394905a7bcSToby Isaac }
10404905a7bcSToby Isaac 
10414905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
10424905a7bcSToby Isaac {
10434905a7bcSToby Isaac   PetscErrorCode ierr;
10444905a7bcSToby Isaac   MatFactorInfo  info;
10454905a7bcSToby Isaac 
10464905a7bcSToby Isaac   PetscFunctionBegin;
10474905a7bcSToby Isaac   info.fill = 1.0;
10484905a7bcSToby Isaac 
10494905a7bcSToby Isaac   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
10504905a7bcSToby Isaac   ierr = MatQRFactor_SeqDense(fact,NULL,&info);CHKERRQ(ierr);
10514905a7bcSToby Isaac   PetscFunctionReturn(0);
10524905a7bcSToby Isaac }
10534905a7bcSToby Isaac 
10544905a7bcSToby Isaac static PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
10554905a7bcSToby Isaac {
10564905a7bcSToby Isaac   PetscErrorCode ierr;
10574905a7bcSToby Isaac 
10584905a7bcSToby Isaac   PetscFunctionBegin;
10594905a7bcSToby Isaac   fact->assembled                  = PETSC_TRUE;
10604905a7bcSToby Isaac   fact->preallocated               = PETSC_TRUE;
10614396437dSToby Isaac   fact->ops->solve                 = MatSolve_SeqDense_QR;
10624396437dSToby Isaac   fact->ops->matsolve              = MatMatSolve_SeqDense_QR;
10634396437dSToby Isaac   if (A->cmap->n == A->rmap->n) {
10644396437dSToby Isaac     fact->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
10654396437dSToby Isaac     fact->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
10664396437dSToby Isaac   }
10674905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
10684905a7bcSToby Isaac   PetscFunctionReturn(0);
10694905a7bcSToby Isaac }
10704905a7bcSToby Isaac 
10714905a7bcSToby Isaac 
1072ca15aa20SStefano Zampini /* uses LAPACK */
1073cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
1074db4efbfdSBarry Smith {
1075db4efbfdSBarry Smith   PetscErrorCode ierr;
1076db4efbfdSBarry Smith 
1077db4efbfdSBarry Smith   PetscFunctionBegin;
1078ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
1079db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1080ca15aa20SStefano Zampini   ierr = MatSetType(*fact,MATDENSE);CHKERRQ(ierr);
10812a350339SBarry Smith   if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) {
1082db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
10832a350339SBarry Smith     (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense;
1084db4efbfdSBarry Smith   } else {
1085db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
1086db4efbfdSBarry Smith   }
1087d5f3da31SBarry Smith   (*fact)->factortype = ftype;
108800c67f3bSHong Zhang 
108900c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
109000c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
1091db4efbfdSBarry Smith   PetscFunctionReturn(0);
1092db4efbfdSBarry Smith }
1093db4efbfdSBarry Smith 
1094289bc588SBarry Smith /* ------------------------------------------------------------------*/
1095e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
1096289bc588SBarry Smith {
1097c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1098d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
1099d9ca1df4SBarry Smith   const PetscScalar *b;
1100dfbe8321SBarry Smith   PetscErrorCode    ierr;
1101d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
110223fff9afSBarry Smith   PetscBLASInt      o = 1,bm = 0;
1103289bc588SBarry Smith 
11043a40ed3dSBarry Smith   PetscFunctionBegin;
1105ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1106c70f7ee4SJunchao Zhang   if (A->offloadmask == PETSC_OFFLOAD_GPU) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
1107ca15aa20SStefano Zampini #endif
1108422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
1109c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
1110289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
11113bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
11122dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
1113289bc588SBarry Smith   }
11141ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1115d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1116b965ef7fSBarry Smith   its  = its*lits;
1117e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1118289bc588SBarry Smith   while (its--) {
1119fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1120289bc588SBarry Smith       for (i=0; i<m; i++) {
11213bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
112255a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1123289bc588SBarry Smith       }
1124289bc588SBarry Smith     }
1125fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1126289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
11273bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
112855a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1129289bc588SBarry Smith       }
1130289bc588SBarry Smith     }
1131289bc588SBarry Smith   }
1132d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
11331ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
11343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1135289bc588SBarry Smith }
1136289bc588SBarry Smith 
1137289bc588SBarry Smith /* -----------------------------------------------------------------*/
1138ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
1139289bc588SBarry Smith {
1140c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1141d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
1142d9ca1df4SBarry Smith   PetscScalar       *y;
1143dfbe8321SBarry Smith   PetscErrorCode    ierr;
11440805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
1145ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
11463a40ed3dSBarry Smith 
11473a40ed3dSBarry Smith   PetscFunctionBegin;
1148c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1149c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1150d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11512bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11525ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11535ac36cfcSBarry Smith     PetscBLASInt i;
11545ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
11555ac36cfcSBarry Smith   } else {
11568b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
11575ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
11585ac36cfcSBarry Smith   }
1159d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11602bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1162289bc588SBarry Smith }
1163800995b7SMatthew Knepley 
1164ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
1165289bc588SBarry Smith {
1166c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1167d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
1168dfbe8321SBarry Smith   PetscErrorCode    ierr;
11690805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
1170d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
11713a40ed3dSBarry Smith 
11723a40ed3dSBarry Smith   PetscFunctionBegin;
1173c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1174c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
1175d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
11762bf066beSStefano Zampini   ierr = VecGetArrayWrite(yy,&y);CHKERRQ(ierr);
11775ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11785ac36cfcSBarry Smith     PetscBLASInt i;
11795ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
11805ac36cfcSBarry Smith   } else {
11818b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
11825ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
11835ac36cfcSBarry Smith   }
1184d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
11852bf066beSStefano Zampini   ierr = VecRestoreArrayWrite(yy,&y);CHKERRQ(ierr);
11863a40ed3dSBarry Smith   PetscFunctionReturn(0);
1187289bc588SBarry Smith }
11886ee01492SSatish Balay 
1189ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1190289bc588SBarry Smith {
1191c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1192d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1193d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
1194dfbe8321SBarry Smith   PetscErrorCode    ierr;
11950805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
11963a40ed3dSBarry Smith 
11973a40ed3dSBarry Smith   PetscFunctionBegin;
1198c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1199c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
120017b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1201d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1202d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12031ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12048b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1205d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12061ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1207dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1209289bc588SBarry Smith }
12106ee01492SSatish Balay 
1211ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1212289bc588SBarry Smith {
1213c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1214d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1215d9ca1df4SBarry Smith   PetscScalar       *y;
1216dfbe8321SBarry Smith   PetscErrorCode    ierr;
12170805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
121887828ca2SBarry Smith   PetscScalar       _DOne=1.0;
12193a40ed3dSBarry Smith 
12203a40ed3dSBarry Smith   PetscFunctionBegin;
1221c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
1222c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
122317b127eeSStefano Zampini   ierr = VecCopy(zz,yy);CHKERRQ(ierr);
1224d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
1225d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
12261ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
12278b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
1228d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
12291ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
1230dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
12313a40ed3dSBarry Smith   PetscFunctionReturn(0);
1232289bc588SBarry Smith }
1233289bc588SBarry Smith 
1234289bc588SBarry Smith /* -----------------------------------------------------------------*/
1235e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1236289bc588SBarry Smith {
1237c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
12386849ba73SBarry Smith   PetscErrorCode ierr;
123913f74950SBarry Smith   PetscInt       i;
124067e560aaSBarry Smith 
12413a40ed3dSBarry Smith   PetscFunctionBegin;
1242d0f46423SBarry Smith   *ncols = A->cmap->n;
1243289bc588SBarry Smith   if (cols) {
1244854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr);
1245d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
1246289bc588SBarry Smith   }
1247289bc588SBarry Smith   if (vals) {
1248ca15aa20SStefano Zampini     const PetscScalar *v;
1249ca15aa20SStefano Zampini 
1250ca15aa20SStefano Zampini     ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1251854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr);
1252ca15aa20SStefano Zampini     v   += row;
1253d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
1254ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1255289bc588SBarry Smith   }
12563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1257289bc588SBarry Smith }
12586ee01492SSatish Balay 
1259e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1260289bc588SBarry Smith {
1261dfbe8321SBarry Smith   PetscErrorCode ierr;
12626e111a19SKarl Rupp 
1263606d414cSSatish Balay   PetscFunctionBegin;
1264*cb4a9cd9SHong Zhang   if (ncols) *ncols = 0;
1265606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
1266606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
12673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1268289bc588SBarry Smith }
1269289bc588SBarry Smith /* ----------------------------------------------------------------*/
1270e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
1271289bc588SBarry Smith {
1272c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
1273ca15aa20SStefano Zampini   PetscScalar      *av;
127413f74950SBarry Smith   PetscInt         i,j,idx=0;
1275ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1276c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
1277ca15aa20SStefano Zampini #endif
1278ca15aa20SStefano Zampini   PetscErrorCode   ierr;
1279d6dfbf8fSBarry Smith 
12803a40ed3dSBarry Smith   PetscFunctionBegin;
1281ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&av);CHKERRQ(ierr);
1282289bc588SBarry Smith   if (!mat->roworiented) {
1283dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1284289bc588SBarry Smith       for (j=0; j<n; j++) {
1285cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1286cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1287289bc588SBarry Smith         for (i=0; i<m; i++) {
1288cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1289cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1290ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1291289bc588SBarry Smith         }
1292289bc588SBarry Smith       }
12933a40ed3dSBarry Smith     } else {
1294289bc588SBarry Smith       for (j=0; j<n; j++) {
1295cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
1296cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1297289bc588SBarry Smith         for (i=0; i<m; i++) {
1298cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
1299cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1300ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1301289bc588SBarry Smith         }
1302289bc588SBarry Smith       }
1303289bc588SBarry Smith     }
13043a40ed3dSBarry Smith   } else {
1305dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1306e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
1307cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1308cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1309e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
1310cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1311cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1312ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1313e8d4e0b9SBarry Smith         }
1314e8d4e0b9SBarry Smith       }
13153a40ed3dSBarry Smith     } else {
1316289bc588SBarry Smith       for (i=0; i<m; i++) {
1317cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
1318cf9c20a2SJed Brown         if (PetscUnlikelyDebug(indexm[i] >= A->rmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
1319289bc588SBarry Smith         for (j=0; j<n; j++) {
1320cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
1321cf9c20a2SJed Brown           if (PetscUnlikelyDebug(indexn[j] >= A->cmap->n)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
1322ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1323289bc588SBarry Smith         }
1324289bc588SBarry Smith       }
1325289bc588SBarry Smith     }
1326e8d4e0b9SBarry Smith   }
1327ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
1328ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1329c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
1330c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
1331ca15aa20SStefano Zampini #endif
1332ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&av);CHKERRQ(ierr);
1333ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1334c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1335ca15aa20SStefano Zampini #endif
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337289bc588SBarry Smith }
1338e8d4e0b9SBarry Smith 
1339e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1340ae80bb75SLois Curfman McInnes {
1341ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1342ca15aa20SStefano Zampini   const PetscScalar *vv;
134313f74950SBarry Smith   PetscInt          i,j;
1344ca15aa20SStefano Zampini   PetscErrorCode    ierr;
1345ae80bb75SLois Curfman McInnes 
13463a40ed3dSBarry Smith   PetscFunctionBegin;
1347ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1348ae80bb75SLois Curfman McInnes   /* row-oriented output */
1349ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
135097e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1351e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1352ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
13536f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1354e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
1355ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1356ae80bb75SLois Curfman McInnes     }
1357ae80bb75SLois Curfman McInnes   }
1358ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
13593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1360ae80bb75SLois Curfman McInnes }
1361ae80bb75SLois Curfman McInnes 
1362289bc588SBarry Smith /* -----------------------------------------------------------------*/
1363289bc588SBarry Smith 
13648491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1365aabbc4fbSShri Abhyankar {
1366aabbc4fbSShri Abhyankar   PetscErrorCode    ierr;
13678491ab44SLisandro Dalcin   PetscBool         skipHeader;
13688491ab44SLisandro Dalcin   PetscViewerFormat format;
13698491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
13708491ab44SLisandro Dalcin   const PetscScalar *v;
13718491ab44SLisandro Dalcin   PetscScalar       *vwork;
1372aabbc4fbSShri Abhyankar 
1373aabbc4fbSShri Abhyankar   PetscFunctionBegin;
13748491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
13758491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
13768491ab44SLisandro Dalcin   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
13778491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1378aabbc4fbSShri Abhyankar 
13798491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
13808491ab44SLisandro Dalcin 
13818491ab44SLisandro Dalcin   /* write matrix header */
13828491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
13838491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
13848491ab44SLisandro Dalcin   if (!skipHeader) {ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);}
13858491ab44SLisandro Dalcin 
13868491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
13878491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
13888491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
13898491ab44SLisandro Dalcin     /* store row lengths for each row */
13908491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&iwork);CHKERRQ(ierr);
13918491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
13928491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
13938491ab44SLisandro Dalcin     /* store column indices (zero start index) */
13948491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
13958491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
13968491ab44SLisandro Dalcin         iwork[k] = j;
13978491ab44SLisandro Dalcin     ierr = PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
13988491ab44SLisandro Dalcin     ierr = PetscFree(iwork);CHKERRQ(ierr);
13998491ab44SLisandro Dalcin   }
14008491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
14018491ab44SLisandro Dalcin   ierr = PetscMalloc1(m*N,&vwork);CHKERRQ(ierr);
14028491ab44SLisandro Dalcin   ierr = MatDenseGetArrayRead(mat,&v);CHKERRQ(ierr);
14038491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14048491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
14058491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
14068491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
14078491ab44SLisandro Dalcin   ierr = MatDenseRestoreArrayRead(mat,&v);CHKERRQ(ierr);
14088491ab44SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14098491ab44SLisandro Dalcin   ierr = PetscFree(vwork);CHKERRQ(ierr);
14108491ab44SLisandro Dalcin   PetscFunctionReturn(0);
14118491ab44SLisandro Dalcin }
14128491ab44SLisandro Dalcin 
14138491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
14148491ab44SLisandro Dalcin {
14158491ab44SLisandro Dalcin   PetscErrorCode ierr;
14168491ab44SLisandro Dalcin   PetscBool      skipHeader;
14178491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
14188491ab44SLisandro Dalcin   PetscInt       rows,cols;
14198491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
14208491ab44SLisandro Dalcin 
14218491ab44SLisandro Dalcin   PetscFunctionBegin;
14228491ab44SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
14238491ab44SLisandro Dalcin   ierr = PetscViewerBinaryGetSkipHeader(viewer,&skipHeader);CHKERRQ(ierr);
14248491ab44SLisandro Dalcin 
14258491ab44SLisandro Dalcin   if (!skipHeader) {
14268491ab44SLisandro Dalcin     ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
14278491ab44SLisandro Dalcin     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
14288491ab44SLisandro Dalcin     M = header[1]; N = header[2];
14298491ab44SLisandro Dalcin     if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
14308491ab44SLisandro Dalcin     if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
14318491ab44SLisandro Dalcin     nz = header[3];
14328491ab44SLisandro Dalcin     if (nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %D in file",nz);
1433aabbc4fbSShri Abhyankar   } else {
14348491ab44SLisandro Dalcin     ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr);
14358491ab44SLisandro Dalcin     if (M < 0 || N < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
14368491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1437e6324fbbSBarry Smith   }
1438aabbc4fbSShri Abhyankar 
14398491ab44SLisandro Dalcin   /* setup global sizes if not set */
14408491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
14418491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
14428491ab44SLisandro Dalcin   ierr = MatSetUp(mat);CHKERRQ(ierr);
14438491ab44SLisandro Dalcin   /* check if global sizes are correct */
14448491ab44SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
14458491ab44SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
1446aabbc4fbSShri Abhyankar 
14478491ab44SLisandro Dalcin   ierr = MatGetSize(mat,NULL,&N);CHKERRQ(ierr);
14488491ab44SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr);
14498491ab44SLisandro Dalcin   ierr = MatDenseGetArray(mat,&v);CHKERRQ(ierr);
14508491ab44SLisandro Dalcin   ierr = MatDenseGetLDA(mat,&lda);CHKERRQ(ierr);
14518491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
14528491ab44SLisandro Dalcin     PetscInt nnz = m*N;
14538491ab44SLisandro Dalcin     /* read in matrix values */
14548491ab44SLisandro Dalcin     ierr = PetscMalloc1(nnz,&vwork);CHKERRQ(ierr);
14558491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14568491ab44SLisandro Dalcin     /* store values in column major order */
14578491ab44SLisandro Dalcin     for (j=0; j<N; j++)
14588491ab44SLisandro Dalcin       for (i=0; i<m; i++)
14598491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
14608491ab44SLisandro Dalcin     ierr = PetscFree(vwork);CHKERRQ(ierr);
14618491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
14628491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
14638491ab44SLisandro Dalcin     /* read in row lengths */
14648491ab44SLisandro Dalcin     ierr = PetscMalloc1(m,&rlens);CHKERRQ(ierr);
14658491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14668491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
14678491ab44SLisandro Dalcin     /* read in column indices and values */
14688491ab44SLisandro Dalcin     ierr = PetscMalloc2(nnz,&icols,nnz,&vwork);CHKERRQ(ierr);
14698491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
14708491ab44SLisandro Dalcin     ierr = PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
14718491ab44SLisandro Dalcin     /* store values in column major order */
14728491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
14738491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
14748491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
14758491ab44SLisandro Dalcin     ierr = PetscFree(rlens);CHKERRQ(ierr);
14768491ab44SLisandro Dalcin     ierr = PetscFree2(icols,vwork);CHKERRQ(ierr);
1477aabbc4fbSShri Abhyankar   }
14788491ab44SLisandro Dalcin   ierr = MatDenseRestoreArray(mat,&v);CHKERRQ(ierr);
14798491ab44SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14808491ab44SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1481aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1482aabbc4fbSShri Abhyankar }
1483aabbc4fbSShri Abhyankar 
1484eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1485eb91f321SVaclav Hapla {
1486eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1487eb91f321SVaclav Hapla   PetscErrorCode ierr;
1488eb91f321SVaclav Hapla 
1489eb91f321SVaclav Hapla   PetscFunctionBegin;
1490eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1491eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1492eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1493eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1494eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1495eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
1496eb91f321SVaclav Hapla   if (isbinary) {
14978491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1498eb91f321SVaclav Hapla   } else if (ishdf5) {
1499eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
1500eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1501eb91f321SVaclav Hapla #else
1502eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1503eb91f321SVaclav Hapla #endif
1504eb91f321SVaclav Hapla   } else {
1505eb91f321SVaclav Hapla     SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1506eb91f321SVaclav Hapla   }
1507eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1508eb91f321SVaclav Hapla }
1509eb91f321SVaclav Hapla 
15106849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1511289bc588SBarry Smith {
1512932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1513dfbe8321SBarry Smith   PetscErrorCode    ierr;
151413f74950SBarry Smith   PetscInt          i,j;
15152dcb1b2aSMatthew Knepley   const char        *name;
1516ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1517f3ef73ceSBarry Smith   PetscViewerFormat format;
15185f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1519ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
15205f481a85SSatish Balay #endif
1521932b0c3eSLois Curfman McInnes 
15223a40ed3dSBarry Smith   PetscFunctionBegin;
1523ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1524b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1525456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
15263a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1527fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1528d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1529d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1530ca15aa20SStefano Zampini       v    = av + i;
153177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1532d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1533aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1534329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
153557622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1536329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
153757622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
15386831982aSBarry Smith         }
153980cd9d93SLois Curfman McInnes #else
15406831982aSBarry Smith         if (*v) {
154157622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
15426831982aSBarry Smith         }
154380cd9d93SLois Curfman McInnes #endif
15441b807ce4Svictorle         v += a->lda;
154580cd9d93SLois Curfman McInnes       }
1546b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154780cd9d93SLois Curfman McInnes     }
1548d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
15493a40ed3dSBarry Smith   } else {
1550d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1551aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
155247989497SBarry Smith     /* determine if matrix has all real values */
1553ca15aa20SStefano Zampini     v = av;
1554d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1555ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
155647989497SBarry Smith     }
155747989497SBarry Smith #endif
1558fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
15593a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1560d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1561d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1562fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1563ffac6cdbSBarry Smith     }
1564ffac6cdbSBarry Smith 
1565d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1566ca15aa20SStefano Zampini       v = av + i;
1567d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1568aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
156947989497SBarry Smith         if (allreal) {
1570c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
157147989497SBarry Smith         } else {
1572c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
157347989497SBarry Smith         }
1574289bc588SBarry Smith #else
1575c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1576289bc588SBarry Smith #endif
15771b807ce4Svictorle         v += a->lda;
1578289bc588SBarry Smith       }
1579b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1580289bc588SBarry Smith     }
1581fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1582b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1583ffac6cdbSBarry Smith     }
1584d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1585da3a660dSBarry Smith   }
1586ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&av);CHKERRQ(ierr);
1587b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15883a40ed3dSBarry Smith   PetscFunctionReturn(0);
1589289bc588SBarry Smith }
1590289bc588SBarry Smith 
15919804daf3SBarry Smith #include <petscdraw.h>
1592e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1593f1af5d2fSBarry Smith {
1594f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
15956849ba73SBarry Smith   PetscErrorCode    ierr;
1596383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1597383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1598ca15aa20SStefano Zampini   const PetscScalar *v;
1599b0a32e0cSBarry Smith   PetscViewer       viewer;
1600b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1601f3ef73ceSBarry Smith   PetscViewerFormat format;
1602f1af5d2fSBarry Smith 
1603f1af5d2fSBarry Smith   PetscFunctionBegin;
1604f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1605b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1606b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1607f1af5d2fSBarry Smith 
1608f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1609ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&v);CHKERRQ(ierr);
1610fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1611383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1612f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1613f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1614383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1615f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1616f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1617f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1618ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1619ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1620ca15aa20SStefano Zampini         else continue;
1621b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1622f1af5d2fSBarry Smith       }
1623f1af5d2fSBarry Smith     }
1624383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1625f1af5d2fSBarry Smith   } else {
1626f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1627f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1628b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1629b05fc000SLisandro Dalcin     PetscDraw popup;
1630b05fc000SLisandro Dalcin 
1631f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1632f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1633f1af5d2fSBarry Smith     }
1634383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1635b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
163645f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1637383922c3SLisandro Dalcin 
1638383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1639f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1640f1af5d2fSBarry Smith       x_l = j;
1641f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1642f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1643f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1644f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1645b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1646b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1647f1af5d2fSBarry Smith       }
1648f1af5d2fSBarry Smith     }
1649383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1650f1af5d2fSBarry Smith   }
1651ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&v);CHKERRQ(ierr);
1652f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1653f1af5d2fSBarry Smith }
1654f1af5d2fSBarry Smith 
1655e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1656f1af5d2fSBarry Smith {
1657b0a32e0cSBarry Smith   PetscDraw      draw;
1658ace3abfcSBarry Smith   PetscBool      isnull;
1659329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1660dfbe8321SBarry Smith   PetscErrorCode ierr;
1661f1af5d2fSBarry Smith 
1662f1af5d2fSBarry Smith   PetscFunctionBegin;
1663b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1664b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1665abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1666f1af5d2fSBarry Smith 
1667d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1668f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1669b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1670832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1671b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
16720298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1673832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1674f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1675f1af5d2fSBarry Smith }
1676f1af5d2fSBarry Smith 
1677dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1678932b0c3eSLois Curfman McInnes {
1679dfbe8321SBarry Smith   PetscErrorCode ierr;
1680ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1681932b0c3eSLois Curfman McInnes 
16823a40ed3dSBarry Smith   PetscFunctionBegin;
1683251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1684251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1685251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
16860f5bd95cSBarry Smith 
1687c45a1595SBarry Smith   if (iascii) {
1688c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
16890f5bd95cSBarry Smith   } else if (isbinary) {
1690637a0070SStefano Zampini     ierr = MatView_Dense_Binary(A,viewer);CHKERRQ(ierr);
1691f1af5d2fSBarry Smith   } else if (isdraw) {
1692f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1693932b0c3eSLois Curfman McInnes   }
16943a40ed3dSBarry Smith   PetscFunctionReturn(0);
1695932b0c3eSLois Curfman McInnes }
1696289bc588SBarry Smith 
1697637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1698d3042a70SBarry Smith {
1699d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1700d3042a70SBarry Smith 
1701d3042a70SBarry Smith   PetscFunctionBegin;
17025ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17035ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17045ea7661aSPierre Jolivet   if (a->unplacedarray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first");
1705d3042a70SBarry Smith   a->unplacedarray       = a->v;
1706d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1707d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1708637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1709ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1710c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1711ca15aa20SStefano Zampini #endif
1712d3042a70SBarry Smith   PetscFunctionReturn(0);
1713d3042a70SBarry Smith }
1714d3042a70SBarry Smith 
1715d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1716d3042a70SBarry Smith {
1717d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1718d3042a70SBarry Smith 
1719d3042a70SBarry Smith   PetscFunctionBegin;
17205ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17215ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1722d3042a70SBarry Smith   a->v             = a->unplacedarray;
1723d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1724d3042a70SBarry Smith   a->unplacedarray = NULL;
1725ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1726c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1727ca15aa20SStefano Zampini #endif
1728d3042a70SBarry Smith   PetscFunctionReturn(0);
1729d3042a70SBarry Smith }
1730d3042a70SBarry Smith 
1731d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1732d5ea218eSStefano Zampini {
1733d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1734d5ea218eSStefano Zampini   PetscErrorCode ierr;
1735d5ea218eSStefano Zampini 
1736d5ea218eSStefano Zampini   PetscFunctionBegin;
17375ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17385ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1739d5ea218eSStefano Zampini   if (!a->user_alloc) { ierr = PetscFree(a->v);CHKERRQ(ierr); }
1740d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1741d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1742d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1743d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1744d5ea218eSStefano Zampini #endif
1745d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1746d5ea218eSStefano Zampini }
1747d5ea218eSStefano Zampini 
1748ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1749289bc588SBarry Smith {
1750ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1751dfbe8321SBarry Smith   PetscErrorCode ierr;
175290f02eecSBarry Smith 
17533a40ed3dSBarry Smith   PetscFunctionBegin;
1754aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1755d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1756a5a9c739SBarry Smith #endif
17574396437dSToby Isaac   ierr = VecDestroy(&(l->qrrhs));CHKERRQ(ierr);
17584905a7bcSToby Isaac   ierr = PetscFree(l->tau);CHKERRQ(ierr);
175905b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1760a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1761abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
17626857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1763637a0070SStefano Zampini   if (!l->unplaced_user_alloc) {ierr = PetscFree(l->unplacedarray);CHKERRQ(ierr);}
17645ea7661aSPierre Jolivet   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
17655ea7661aSPierre Jolivet   if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17666947451fSStefano Zampini   ierr = VecDestroy(&l->cvec);CHKERRQ(ierr);
17675ea7661aSPierre Jolivet   ierr = MatDestroy(&l->cmat);CHKERRQ(ierr);
1768bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1769dbd8c25aSHong Zhang 
1770f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
17714905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL);CHKERRQ(ierr);
17724905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorNumeric_C",NULL);CHKERRQ(ierr);
17734905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatQRFactorSymbolic_C",NULL);CHKERRQ(ierr);
177449a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
1775ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
1776bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
177752c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
1778d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1779d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1780d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
178152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
178252c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
17836947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
17846947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
17858baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
17868baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17878baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
17888baccfbdSHong Zhang #endif
1789d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1790d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL);CHKERRQ(ierr);
1791d24d4204SJose E. Roman #endif
17922bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
17932bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL);CHKERRQ(ierr);
17944222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL);CHKERRQ(ierr);
17954222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL);CHKERRQ(ierr);
17962bf066beSStefano Zampini #endif
1797bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
17984222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
17994222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL);CHKERRQ(ierr);
18004222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL);CHKERRQ(ierr);
18014222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL);CHKERRQ(ierr);
180252c5f739Sprj- 
180386aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
180486aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
18056947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
18066947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
18076947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
18086947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
18096947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
18106947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
18115ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr);
18125ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr);
18133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1814289bc588SBarry Smith }
1815289bc588SBarry Smith 
1816e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1817289bc588SBarry Smith {
1818c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
18196849ba73SBarry Smith   PetscErrorCode ierr;
18206536e3caSStefano Zampini   PetscInt       k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n;
182187828ca2SBarry Smith   PetscScalar    *v,tmp;
182248b35521SBarry Smith 
18233a40ed3dSBarry Smith   PetscFunctionBegin;
18246536e3caSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
18256536e3caSStefano Zampini     if (m == n) { /* in place transpose */
1826ca15aa20SStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
1827d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1828289bc588SBarry Smith         for (k=0; k<j; k++) {
18291b807ce4Svictorle           tmp        = v[j + k*M];
18301b807ce4Svictorle           v[j + k*M] = v[k + j*M];
18311b807ce4Svictorle           v[k + j*M] = tmp;
1832289bc588SBarry Smith         }
1833289bc588SBarry Smith       }
1834ca15aa20SStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18356536e3caSStefano Zampini     } else { /* reuse memory, temporary allocates new memory */
18366536e3caSStefano Zampini       PetscScalar *v2;
18376536e3caSStefano Zampini       PetscLayout tmplayout;
18386536e3caSStefano Zampini 
18396536e3caSStefano Zampini       ierr = PetscMalloc1((size_t)m*n,&v2);CHKERRQ(ierr);
18406536e3caSStefano Zampini       ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
18416536e3caSStefano Zampini       for (j=0; j<n; j++) {
18426536e3caSStefano Zampini         for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M];
18436536e3caSStefano Zampini       }
18446536e3caSStefano Zampini       ierr = PetscArraycpy(v,v2,(size_t)m*n);CHKERRQ(ierr);
18456536e3caSStefano Zampini       ierr = PetscFree(v2);CHKERRQ(ierr);
18466536e3caSStefano Zampini       ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
18476536e3caSStefano Zampini       /* cleanup size dependent quantities */
18486536e3caSStefano Zampini       ierr = VecDestroy(&mat->cvec);CHKERRQ(ierr);
18496536e3caSStefano Zampini       ierr = MatDestroy(&mat->cmat);CHKERRQ(ierr);
18506536e3caSStefano Zampini       ierr = PetscFree(mat->pivots);CHKERRQ(ierr);
18516536e3caSStefano Zampini       ierr = PetscFree(mat->fwork);CHKERRQ(ierr);
18526536e3caSStefano Zampini       ierr = MatDestroy(&mat->ptapwork);CHKERRQ(ierr);
18536536e3caSStefano Zampini       /* swap row/col layouts */
18546536e3caSStefano Zampini       mat->lda  = n;
18556536e3caSStefano Zampini       tmplayout = A->rmap;
18566536e3caSStefano Zampini       A->rmap   = A->cmap;
18576536e3caSStefano Zampini       A->cmap   = tmplayout;
18586536e3caSStefano Zampini     }
18593a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1860d3e5ee88SLois Curfman McInnes     Mat          tmat;
1861ec8511deSBarry Smith     Mat_SeqDense *tmatd;
186287828ca2SBarry Smith     PetscScalar  *v2;
1863af36a384SStefano Zampini     PetscInt     M2;
1864ea709b57SSatish Balay 
18656536e3caSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX) {
1866ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1867d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
18687adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
18690298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1870ca15aa20SStefano Zampini     } else tmat = *matout;
1871ca15aa20SStefano Zampini 
1872ca15aa20SStefano Zampini     ierr  = MatDenseGetArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
1873ca15aa20SStefano Zampini     ierr  = MatDenseGetArray(tmat,&v2);CHKERRQ(ierr);
1874ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1875ca15aa20SStefano Zampini     M2    = tmatd->lda;
1876d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1877af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1878d3e5ee88SLois Curfman McInnes     }
1879ca15aa20SStefano Zampini     ierr = MatDenseRestoreArray(tmat,&v2);CHKERRQ(ierr);
1880ca15aa20SStefano Zampini     ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&v);CHKERRQ(ierr);
18816d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18826d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18836536e3caSStefano Zampini     *matout = tmat;
188448b35521SBarry Smith   }
18853a40ed3dSBarry Smith   PetscFunctionReturn(0);
1886289bc588SBarry Smith }
1887289bc588SBarry Smith 
1888e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1889289bc588SBarry Smith {
1890c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1891c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1892ca15aa20SStefano Zampini   PetscInt          i;
1893ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
1894ca15aa20SStefano Zampini   PetscErrorCode    ierr;
18959ea5d5aeSSatish Balay 
18963a40ed3dSBarry Smith   PetscFunctionBegin;
1897d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1898d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1899ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A1,&v1);CHKERRQ(ierr);
1900ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A2,&v2);CHKERRQ(ierr);
1901ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
1902ca15aa20SStefano Zampini     ierr = PetscArraycmp(v1,v2,A1->rmap->n,flg);CHKERRQ(ierr);
1903ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1904ca15aa20SStefano Zampini     v1 += mat1->lda;
1905ca15aa20SStefano Zampini     v2 += mat2->lda;
19061b807ce4Svictorle   }
1907ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A1,&v1);CHKERRQ(ierr);
1908ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A2,&v2);CHKERRQ(ierr);
190977c4ece6SBarry Smith   *flg = PETSC_TRUE;
19103a40ed3dSBarry Smith   PetscFunctionReturn(0);
1911289bc588SBarry Smith }
1912289bc588SBarry Smith 
1913e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1914289bc588SBarry Smith {
1915c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
191613f74950SBarry Smith   PetscInt          i,n,len;
1917ca15aa20SStefano Zampini   PetscScalar       *x;
1918ca15aa20SStefano Zampini   const PetscScalar *vv;
1919ca15aa20SStefano Zampini   PetscErrorCode    ierr;
192044cd7ae7SLois Curfman McInnes 
19213a40ed3dSBarry Smith   PetscFunctionBegin;
19227a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
19231ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1924d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1925ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&vv);CHKERRQ(ierr);
1926e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
192744cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1928ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1929289bc588SBarry Smith   }
1930ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&vv);CHKERRQ(ierr);
19311ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
19323a40ed3dSBarry Smith   PetscFunctionReturn(0);
1933289bc588SBarry Smith }
1934289bc588SBarry Smith 
1935e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1936289bc588SBarry Smith {
1937c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1938f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1939ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1940dfbe8321SBarry Smith   PetscErrorCode    ierr;
1941d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
194255659b69SBarry Smith 
19433a40ed3dSBarry Smith   PetscFunctionBegin;
1944ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&vv);CHKERRQ(ierr);
194528988994SBarry Smith   if (ll) {
19467a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1947f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1948e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1949da3a660dSBarry Smith     for (i=0; i<m; i++) {
1950da3a660dSBarry Smith       x = l[i];
1951ca15aa20SStefano Zampini       v = vv + i;
1952b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1953da3a660dSBarry Smith     }
1954f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1955eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1956da3a660dSBarry Smith   }
195728988994SBarry Smith   if (rr) {
19587a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1959f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1960e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1961da3a660dSBarry Smith     for (i=0; i<n; i++) {
1962da3a660dSBarry Smith       x = r[i];
1963ca15aa20SStefano Zampini       v = vv + i*mat->lda;
19642205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1965da3a660dSBarry Smith     }
1966f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1967eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1968da3a660dSBarry Smith   }
1969ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&vv);CHKERRQ(ierr);
19703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1971289bc588SBarry Smith }
1972289bc588SBarry Smith 
1973ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1974289bc588SBarry Smith {
1975c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1976ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1977329f5518SBarry Smith   PetscReal         sum  = 0.0;
1978d0f46423SBarry Smith   PetscInt          lda  =mat->lda,m=A->rmap->n,i,j;
1979efee365bSSatish Balay   PetscErrorCode    ierr;
198055659b69SBarry Smith 
19813a40ed3dSBarry Smith   PetscFunctionBegin;
1982ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
1983ca15aa20SStefano Zampini   v    = vv;
1984289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1985a5ce6ee0Svictorle     if (lda>m) {
1986d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1987ca15aa20SStefano Zampini         v = vv+j*lda;
1988a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1989a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1990a5ce6ee0Svictorle         }
1991a5ce6ee0Svictorle       }
1992a5ce6ee0Svictorle     } else {
1993570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1994570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
199573cf7048SBarry Smith       PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one));
1996570b7f6dSBarry Smith     }
1997570b7f6dSBarry Smith #else
1998d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1999329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
2000289bc588SBarry Smith       }
2001a5ce6ee0Svictorle     }
20028f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
2003570b7f6dSBarry Smith #endif
2004dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20053a40ed3dSBarry Smith   } else if (type == NORM_1) {
2006064f8208SBarry Smith     *nrm = 0.0;
2007d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2008ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
2009289bc588SBarry Smith       sum = 0.0;
2010d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
201133a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
2012289bc588SBarry Smith       }
2013064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2014289bc588SBarry Smith     }
2015eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
20163a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
2017064f8208SBarry Smith     *nrm = 0.0;
2018d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
2019ca15aa20SStefano Zampini       v   = vv + j;
2020289bc588SBarry Smith       sum = 0.0;
2021d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
20221b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
2023289bc588SBarry Smith       }
2024064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
2025289bc588SBarry Smith     }
2026eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
2027e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
2028ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv);CHKERRQ(ierr);
20293a40ed3dSBarry Smith   PetscFunctionReturn(0);
2030289bc588SBarry Smith }
2031289bc588SBarry Smith 
2032e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
2033289bc588SBarry Smith {
2034c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
203563ba0a88SBarry Smith   PetscErrorCode ierr;
203667e560aaSBarry Smith 
20373a40ed3dSBarry Smith   PetscFunctionBegin;
2038b5a2b587SKris Buschelman   switch (op) {
2039b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
20404e0d8c25SBarry Smith     aij->roworiented = flg;
2041b5a2b587SKris Buschelman     break;
2042512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
2043b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
20443971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
20458c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
204613fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
2047b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
2048b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
20490f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
20505021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
2051071fcb05SBarry Smith   case MAT_SORTED_FULL:
20525021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
20535021d80fSJed Brown     break;
20545021d80fSJed Brown   case MAT_SPD:
205577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
205677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
20579a4540c5SBarry Smith   case MAT_HERMITIAN:
20589a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
20595021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
206077e54ba9SKris Buschelman     break;
2061b5a2b587SKris Buschelman   default:
2062e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
20633a40ed3dSBarry Smith   }
20643a40ed3dSBarry Smith   PetscFunctionReturn(0);
2065289bc588SBarry Smith }
2066289bc588SBarry Smith 
2067e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
20686f0a148fSBarry Smith {
2069ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
20706849ba73SBarry Smith   PetscErrorCode ierr;
2071d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
2072ca15aa20SStefano Zampini   PetscScalar    *v;
20733a40ed3dSBarry Smith 
20743a40ed3dSBarry Smith   PetscFunctionBegin;
2075ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2076a5ce6ee0Svictorle   if (lda>m) {
2077d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
2078ca15aa20SStefano Zampini       ierr = PetscArrayzero(v+j*lda,m);CHKERRQ(ierr);
2079a5ce6ee0Svictorle     }
2080a5ce6ee0Svictorle   } else {
2081ca15aa20SStefano Zampini     ierr = PetscArrayzero(v,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2082a5ce6ee0Svictorle   }
2083ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
20843a40ed3dSBarry Smith   PetscFunctionReturn(0);
20856f0a148fSBarry Smith }
20866f0a148fSBarry Smith 
2087e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
20886f0a148fSBarry Smith {
208997b48c8fSBarry Smith   PetscErrorCode    ierr;
2090ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
2091b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
2092ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
209397b48c8fSBarry Smith   const PetscScalar *xx;
209455659b69SBarry Smith 
20953a40ed3dSBarry Smith   PetscFunctionBegin;
209676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
2097b9679d65SBarry Smith     for (i=0; i<N; i++) {
2098b9679d65SBarry Smith       if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
2099b9679d65SBarry Smith       if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
2100b9679d65SBarry Smith     }
210176bd3646SJed Brown   }
2102ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
2103b9679d65SBarry Smith 
210497b48c8fSBarry Smith   /* fix right hand side if needed */
210597b48c8fSBarry Smith   if (x && b) {
210697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
210797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
21082205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
210997b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
211097b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
211197b48c8fSBarry Smith   }
211297b48c8fSBarry Smith 
2113ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
21146f0a148fSBarry Smith   for (i=0; i<N; i++) {
2115ca15aa20SStefano Zampini     slot = v + rows[i];
2116b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
21176f0a148fSBarry Smith   }
2118f4df32b1SMatthew Knepley   if (diag != 0.0) {
2119b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
21206f0a148fSBarry Smith     for (i=0; i<N; i++) {
2121ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
2122f4df32b1SMatthew Knepley       *slot = diag;
21236f0a148fSBarry Smith     }
21246f0a148fSBarry Smith   }
2125ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
21263a40ed3dSBarry Smith   PetscFunctionReturn(0);
21276f0a148fSBarry Smith }
2128557bce09SLois Curfman McInnes 
212949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
213049a6ff4bSBarry Smith {
213149a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
213249a6ff4bSBarry Smith 
213349a6ff4bSBarry Smith   PetscFunctionBegin;
213449a6ff4bSBarry Smith   *lda = mat->lda;
213549a6ff4bSBarry Smith   PetscFunctionReturn(0);
213649a6ff4bSBarry Smith }
213749a6ff4bSBarry Smith 
2138637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
213964e87e97SBarry Smith {
2140c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
21413a40ed3dSBarry Smith 
21423a40ed3dSBarry Smith   PetscFunctionBegin;
2143616b8fbbSStefano Zampini   if (mat->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
214464e87e97SBarry Smith   *array = mat->v;
21453a40ed3dSBarry Smith   PetscFunctionReturn(0);
214664e87e97SBarry Smith }
21470754003eSLois Curfman McInnes 
2148637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
2149ff14e315SSatish Balay {
21503a40ed3dSBarry Smith   PetscFunctionBegin;
2151637a0070SStefano Zampini   *array = NULL;
21523a40ed3dSBarry Smith   PetscFunctionReturn(0);
2153ff14e315SSatish Balay }
21540754003eSLois Curfman McInnes 
2155dec5eb66SMatthew G Knepley /*@C
215649a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
215749a6ff4bSBarry Smith 
2158ad16ce7aSStefano Zampini    Not collective
215949a6ff4bSBarry Smith 
216049a6ff4bSBarry Smith    Input Parameter:
216149a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
216249a6ff4bSBarry Smith 
216349a6ff4bSBarry Smith    Output Parameter:
216449a6ff4bSBarry Smith .   lda - the leading dimension
216549a6ff4bSBarry Smith 
216649a6ff4bSBarry Smith    Level: intermediate
216749a6ff4bSBarry Smith 
2168ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
216949a6ff4bSBarry Smith @*/
217049a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
217149a6ff4bSBarry Smith {
217249a6ff4bSBarry Smith   PetscErrorCode ierr;
217349a6ff4bSBarry Smith 
217449a6ff4bSBarry Smith   PetscFunctionBegin;
2175d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2176d5ea218eSStefano Zampini   PetscValidPointer(lda,2);
217749a6ff4bSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));CHKERRQ(ierr);
217849a6ff4bSBarry Smith   PetscFunctionReturn(0);
217949a6ff4bSBarry Smith }
218049a6ff4bSBarry Smith 
218149a6ff4bSBarry Smith /*@C
2182ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
2183ad16ce7aSStefano Zampini 
2184ad16ce7aSStefano Zampini    Not collective
2185ad16ce7aSStefano Zampini 
2186ad16ce7aSStefano Zampini    Input Parameter:
2187ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
2188ad16ce7aSStefano Zampini -  lda - the leading dimension
2189ad16ce7aSStefano Zampini 
2190ad16ce7aSStefano Zampini    Level: intermediate
2191ad16ce7aSStefano Zampini 
2192ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
2193ad16ce7aSStefano Zampini @*/
2194ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
2195ad16ce7aSStefano Zampini {
2196ad16ce7aSStefano Zampini   PetscErrorCode ierr;
2197ad16ce7aSStefano Zampini 
2198ad16ce7aSStefano Zampini   PetscFunctionBegin;
2199ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2200ad16ce7aSStefano Zampini   ierr = PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));CHKERRQ(ierr);
2201ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
2202ad16ce7aSStefano Zampini }
2203ad16ce7aSStefano Zampini 
2204ad16ce7aSStefano Zampini /*@C
22056947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
220673a71a0fSBarry Smith 
22078572280aSBarry Smith    Logically Collective on Mat
220873a71a0fSBarry Smith 
220973a71a0fSBarry Smith    Input Parameter:
22106947451fSStefano Zampini .  mat - a dense matrix
221173a71a0fSBarry Smith 
221273a71a0fSBarry Smith    Output Parameter:
221373a71a0fSBarry Smith .   array - pointer to the data
221473a71a0fSBarry Smith 
221573a71a0fSBarry Smith    Level: intermediate
221673a71a0fSBarry Smith 
22176947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
221873a71a0fSBarry Smith @*/
22198c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
222073a71a0fSBarry Smith {
222173a71a0fSBarry Smith   PetscErrorCode ierr;
222273a71a0fSBarry Smith 
222373a71a0fSBarry Smith   PetscFunctionBegin;
2224d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2225d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22268c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
222773a71a0fSBarry Smith   PetscFunctionReturn(0);
222873a71a0fSBarry Smith }
222973a71a0fSBarry Smith 
2230dec5eb66SMatthew G Knepley /*@C
2231579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
223273a71a0fSBarry Smith 
22338572280aSBarry Smith    Logically Collective on Mat
22348572280aSBarry Smith 
22358572280aSBarry Smith    Input Parameters:
22366947451fSStefano Zampini +  mat - a dense matrix
2237a2b725a8SWilliam Gropp -  array - pointer to the data
22388572280aSBarry Smith 
22398572280aSBarry Smith    Level: intermediate
22408572280aSBarry Smith 
22416947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22428572280aSBarry Smith @*/
22438572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
22448572280aSBarry Smith {
22458572280aSBarry Smith   PetscErrorCode ierr;
22468572280aSBarry Smith 
22478572280aSBarry Smith   PetscFunctionBegin;
2248d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2249d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22508572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
22518572280aSBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2252637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2253637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
2254637a0070SStefano Zampini #endif
22558572280aSBarry Smith   PetscFunctionReturn(0);
22568572280aSBarry Smith }
22578572280aSBarry Smith 
22588572280aSBarry Smith /*@C
22596947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
22608572280aSBarry Smith 
22618572280aSBarry Smith    Not Collective
22628572280aSBarry Smith 
22638572280aSBarry Smith    Input Parameter:
22646947451fSStefano Zampini .  mat - a dense matrix
22658572280aSBarry Smith 
22668572280aSBarry Smith    Output Parameter:
22678572280aSBarry Smith .   array - pointer to the data
22688572280aSBarry Smith 
22698572280aSBarry Smith    Level: intermediate
22708572280aSBarry Smith 
22716947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
22728572280aSBarry Smith @*/
22738572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
22748572280aSBarry Smith {
22758572280aSBarry Smith   PetscErrorCode ierr;
22768572280aSBarry Smith 
22778572280aSBarry Smith   PetscFunctionBegin;
2278d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2279d5ea218eSStefano Zampini   PetscValidPointer(array,2);
22808572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
22818572280aSBarry Smith   PetscFunctionReturn(0);
22828572280aSBarry Smith }
22838572280aSBarry Smith 
22848572280aSBarry Smith /*@C
22856947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
22868572280aSBarry Smith 
228773a71a0fSBarry Smith    Not Collective
228873a71a0fSBarry Smith 
228973a71a0fSBarry Smith    Input Parameters:
22906947451fSStefano Zampini +  mat - a dense matrix
2291a2b725a8SWilliam Gropp -  array - pointer to the data
229273a71a0fSBarry Smith 
229373a71a0fSBarry Smith    Level: intermediate
229473a71a0fSBarry Smith 
22956947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
229673a71a0fSBarry Smith @*/
22978572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
229873a71a0fSBarry Smith {
229973a71a0fSBarry Smith   PetscErrorCode ierr;
230073a71a0fSBarry Smith 
230173a71a0fSBarry Smith   PetscFunctionBegin;
2302d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2303d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23048572280aSBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));CHKERRQ(ierr);
230573a71a0fSBarry Smith   PetscFunctionReturn(0);
230673a71a0fSBarry Smith }
230773a71a0fSBarry Smith 
23086947451fSStefano Zampini /*@C
23096947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
23106947451fSStefano Zampini 
23116947451fSStefano Zampini    Not Collective
23126947451fSStefano Zampini 
23136947451fSStefano Zampini    Input Parameter:
23146947451fSStefano Zampini .  mat - a dense matrix
23156947451fSStefano Zampini 
23166947451fSStefano Zampini    Output Parameter:
23176947451fSStefano Zampini .   array - pointer to the data
23186947451fSStefano Zampini 
23196947451fSStefano Zampini    Level: intermediate
23206947451fSStefano Zampini 
23216947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23226947451fSStefano Zampini @*/
23236947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
23246947451fSStefano Zampini {
23256947451fSStefano Zampini   PetscErrorCode ierr;
23266947451fSStefano Zampini 
23276947451fSStefano Zampini   PetscFunctionBegin;
2328d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2329d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23306947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23316947451fSStefano Zampini   PetscFunctionReturn(0);
23326947451fSStefano Zampini }
23336947451fSStefano Zampini 
23346947451fSStefano Zampini /*@C
23356947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
23366947451fSStefano Zampini 
23376947451fSStefano Zampini    Not Collective
23386947451fSStefano Zampini 
23396947451fSStefano Zampini    Input Parameters:
23406947451fSStefano Zampini +  mat - a dense matrix
23416947451fSStefano Zampini -  array - pointer to the data
23426947451fSStefano Zampini 
23436947451fSStefano Zampini    Level: intermediate
23446947451fSStefano Zampini 
23456947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
23466947451fSStefano Zampini @*/
23476947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
23486947451fSStefano Zampini {
23496947451fSStefano Zampini   PetscErrorCode ierr;
23506947451fSStefano Zampini 
23516947451fSStefano Zampini   PetscFunctionBegin;
2352d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2353d5ea218eSStefano Zampini   PetscValidPointer(array,2);
23546947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
23556947451fSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
23566947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
23576947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
23586947451fSStefano Zampini #endif
23596947451fSStefano Zampini   PetscFunctionReturn(0);
23606947451fSStefano Zampini }
23616947451fSStefano Zampini 
2362023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
23630754003eSLois Curfman McInnes {
2364c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
23656849ba73SBarry Smith   PetscErrorCode ierr;
2366ca15aa20SStefano Zampini   PetscInt       i,j,nrows,ncols,blda;
23675d0c19d7SBarry Smith   const PetscInt *irow,*icol;
236887828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
23690754003eSLois Curfman McInnes   Mat            newmat;
23700754003eSLois Curfman McInnes 
23713a40ed3dSBarry Smith   PetscFunctionBegin;
237278b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
237378b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
2374e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
2375e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
23760754003eSLois Curfman McInnes 
2377182d2002SSatish Balay   /* Check submatrixcall */
2378182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
237913f74950SBarry Smith     PetscInt n_cols,n_rows;
2380182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
238121a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2382f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
2383c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
238421a2c019SBarry Smith     }
2385182d2002SSatish Balay     newmat = *B;
2386182d2002SSatish Balay   } else {
23870754003eSLois Curfman McInnes     /* Create and fill new matrix */
2388ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2389f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
23907adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
23910298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
2392182d2002SSatish Balay   }
2393182d2002SSatish Balay 
2394182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
2395ca15aa20SStefano Zampini   ierr = MatDenseGetArray(newmat,&bv);CHKERRQ(ierr);
2396ca15aa20SStefano Zampini   ierr = MatDenseGetLDA(newmat,&blda);CHKERRQ(ierr);
2397182d2002SSatish Balay   for (i=0; i<ncols; i++) {
23986de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2399ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2400ca15aa20SStefano Zampini     bv += blda;
24010754003eSLois Curfman McInnes   }
2402ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(newmat,&bv);CHKERRQ(ierr);
2403182d2002SSatish Balay 
2404182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
24056d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24066d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24070754003eSLois Curfman McInnes 
24080754003eSLois Curfman McInnes   /* Free work space */
240978b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
241078b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
2411182d2002SSatish Balay   *B   = newmat;
24123a40ed3dSBarry Smith   PetscFunctionReturn(0);
24130754003eSLois Curfman McInnes }
24140754003eSLois Curfman McInnes 
24157dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2416905e6a2fSBarry Smith {
24176849ba73SBarry Smith   PetscErrorCode ierr;
241813f74950SBarry Smith   PetscInt       i;
2419905e6a2fSBarry Smith 
24203a40ed3dSBarry Smith   PetscFunctionBegin;
2421905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
2422df750dc8SHong Zhang     ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr);
2423905e6a2fSBarry Smith   }
2424905e6a2fSBarry Smith 
2425905e6a2fSBarry Smith   for (i=0; i<n; i++) {
2426023c16fcSToby Isaac     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i]);CHKERRQ(ierr);
2427905e6a2fSBarry Smith   }
24283a40ed3dSBarry Smith   PetscFunctionReturn(0);
2429905e6a2fSBarry Smith }
2430905e6a2fSBarry Smith 
2431e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2432c0aa2d19SHong Zhang {
2433c0aa2d19SHong Zhang   PetscFunctionBegin;
2434c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2435c0aa2d19SHong Zhang }
2436c0aa2d19SHong Zhang 
2437e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2438c0aa2d19SHong Zhang {
2439c0aa2d19SHong Zhang   PetscFunctionBegin;
2440c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2441c0aa2d19SHong Zhang }
2442c0aa2d19SHong Zhang 
2443a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
24444b0e389bSBarry Smith {
24454b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
24466849ba73SBarry Smith   PetscErrorCode    ierr;
2447ca15aa20SStefano Zampini   const PetscScalar *va;
2448ca15aa20SStefano Zampini   PetscScalar       *vb;
2449d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
24503a40ed3dSBarry Smith 
24513a40ed3dSBarry Smith   PetscFunctionBegin;
245233f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
245333f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
2454cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
24553a40ed3dSBarry Smith     PetscFunctionReturn(0);
24563a40ed3dSBarry Smith   }
2457e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
2458ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&va);CHKERRQ(ierr);
2459ca15aa20SStefano Zampini   ierr = MatDenseGetArray(B,&vb);CHKERRQ(ierr);
2460a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
24610dbb7854Svictorle     for (j=0; j<n; j++) {
2462ca15aa20SStefano Zampini       ierr = PetscArraycpy(vb+j*lda2,va+j*lda1,m);CHKERRQ(ierr);
2463a5ce6ee0Svictorle     }
2464a5ce6ee0Svictorle   } else {
2465ca15aa20SStefano Zampini     ierr = PetscArraycpy(vb,va,A->rmap->n*A->cmap->n);CHKERRQ(ierr);
2466a5ce6ee0Svictorle   }
2467ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(B,&vb);CHKERRQ(ierr);
2468ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&va);CHKERRQ(ierr);
2469ca15aa20SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2470ca15aa20SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2471273d9f13SBarry Smith   PetscFunctionReturn(0);
2472273d9f13SBarry Smith }
2473273d9f13SBarry Smith 
2474e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
2475273d9f13SBarry Smith {
2476dfbe8321SBarry Smith   PetscErrorCode ierr;
2477273d9f13SBarry Smith 
2478273d9f13SBarry Smith   PetscFunctionBegin;
247918992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
248018992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
248118992e5dSStefano Zampini   if (!A->preallocated) {
2482f4259b30SLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
248318992e5dSStefano Zampini   }
24843a40ed3dSBarry Smith   PetscFunctionReturn(0);
24854b0e389bSBarry Smith }
24864b0e389bSBarry Smith 
2487ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2488ba337c44SJed Brown {
24894396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
2490ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
24914396437dSToby Isaac   PetscInt       min = PetscMin(A->rmap->n,A->cmap->n);
2492ca15aa20SStefano Zampini   PetscScalar    *aa;
2493ca15aa20SStefano Zampini   PetscErrorCode ierr;
2494ba337c44SJed Brown 
2495ba337c44SJed Brown   PetscFunctionBegin;
2496ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2497ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
2498ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
24994396437dSToby Isaac   if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]);
2500ba337c44SJed Brown   PetscFunctionReturn(0);
2501ba337c44SJed Brown }
2502ba337c44SJed Brown 
2503ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2504ba337c44SJed Brown {
2505ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2506ca15aa20SStefano Zampini   PetscScalar    *aa;
2507ca15aa20SStefano Zampini   PetscErrorCode ierr;
2508ba337c44SJed Brown 
2509ba337c44SJed Brown   PetscFunctionBegin;
2510ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2511ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
2512ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2513ba337c44SJed Brown   PetscFunctionReturn(0);
2514ba337c44SJed Brown }
2515ba337c44SJed Brown 
2516ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2517ba337c44SJed Brown {
2518ba337c44SJed Brown   PetscInt       i,nz = A->rmap->n*A->cmap->n;
2519ca15aa20SStefano Zampini   PetscScalar    *aa;
2520ca15aa20SStefano Zampini   PetscErrorCode ierr;
2521ba337c44SJed Brown 
2522ba337c44SJed Brown   PetscFunctionBegin;
2523ca15aa20SStefano Zampini   ierr = MatDenseGetArray(A,&aa);CHKERRQ(ierr);
2524ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
2525ca15aa20SStefano Zampini   ierr = MatDenseRestoreArray(A,&aa);CHKERRQ(ierr);
2526ba337c44SJed Brown   PetscFunctionReturn(0);
2527ba337c44SJed Brown }
2528284134d9SBarry Smith 
2529a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
25304222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2531a9fe9ddaSSatish Balay {
2532ee16a9a1SHong Zhang   PetscErrorCode ierr;
2533d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
25347a3c3d58SStefano Zampini   PetscBool      cisdense;
2535a9fe9ddaSSatish Balay 
2536ee16a9a1SHong Zhang   PetscFunctionBegin;
25374222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25387a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25397a3c3d58SStefano Zampini   if (!cisdense) {
25407a3c3d58SStefano Zampini     PetscBool flg;
25417a3c3d58SStefano Zampini 
2542ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25434222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25447a3c3d58SStefano Zampini   }
254518992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2546ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2547ee16a9a1SHong Zhang }
2548a9fe9ddaSSatish Balay 
2549a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2550a9fe9ddaSSatish Balay {
25516718818eSStefano Zampini   Mat_SeqDense       *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
25520805154bSBarry Smith   PetscBLASInt       m,n,k;
2553ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2554ca15aa20SStefano Zampini   PetscScalar       *cv;
2555a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2556c2916339SPierre Jolivet   PetscErrorCode    ierr;
2557a9fe9ddaSSatish Balay 
2558a9fe9ddaSSatish Balay   PetscFunctionBegin;
25598208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
25608208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2561c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
256249d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
2563ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
2564ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
25656718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
2566ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
2567ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2568ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
2569ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
25706718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2571a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2572a9fe9ddaSSatish Balay }
2573a9fe9ddaSSatish Balay 
25744222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
257569f65d41SStefano Zampini {
257669f65d41SStefano Zampini   PetscErrorCode ierr;
257769f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
25787a3c3d58SStefano Zampini   PetscBool      cisdense;
257969f65d41SStefano Zampini 
258069f65d41SStefano Zampini   PetscFunctionBegin;
25814222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
25827a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
25837a3c3d58SStefano Zampini   if (!cisdense) {
25847a3c3d58SStefano Zampini     PetscBool flg;
25857a3c3d58SStefano Zampini 
2586ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
25874222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
25887a3c3d58SStefano Zampini   }
258918992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
259069f65d41SStefano Zampini   PetscFunctionReturn(0);
259169f65d41SStefano Zampini }
259269f65d41SStefano Zampini 
259369f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
259469f65d41SStefano Zampini {
259569f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
259669f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
259769f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
25986718818eSStefano Zampini   const PetscScalar *av,*bv;
25996718818eSStefano Zampini   PetscScalar       *cv;
260069f65d41SStefano Zampini   PetscBLASInt      m,n,k;
260169f65d41SStefano Zampini   PetscScalar       _DOne=1.0,_DZero=0.0;
260269f65d41SStefano Zampini   PetscErrorCode    ierr;
260369f65d41SStefano Zampini 
260469f65d41SStefano Zampini   PetscFunctionBegin;
260549d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
260649d0e964SStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
260769f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
260849d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26096718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26106718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26116718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26126718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26136718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26146718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26156718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2616ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
261769f65d41SStefano Zampini   PetscFunctionReturn(0);
261869f65d41SStefano Zampini }
261969f65d41SStefano Zampini 
26204222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2621a9fe9ddaSSatish Balay {
2622ee16a9a1SHong Zhang   PetscErrorCode ierr;
2623d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
26247a3c3d58SStefano Zampini   PetscBool      cisdense;
2625a9fe9ddaSSatish Balay 
2626ee16a9a1SHong Zhang   PetscFunctionBegin;
26274222ddf1SHong Zhang   ierr = MatSetSizes(C,m,n,m,n);CHKERRQ(ierr);
26287a3c3d58SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
26297a3c3d58SStefano Zampini   if (!cisdense) {
26307a3c3d58SStefano Zampini     PetscBool flg;
26317a3c3d58SStefano Zampini 
2632ca15aa20SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg);CHKERRQ(ierr);
26334222ddf1SHong Zhang     ierr = MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE);CHKERRQ(ierr);
26347a3c3d58SStefano Zampini   }
263518992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2636ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2637ee16a9a1SHong Zhang }
2638a9fe9ddaSSatish Balay 
263975648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2640a9fe9ddaSSatish Balay {
2641a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2642a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
2643a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
26446718818eSStefano Zampini   const PetscScalar *av,*bv;
26456718818eSStefano Zampini   PetscScalar       *cv;
26460805154bSBarry Smith   PetscBLASInt      m,n,k;
2647a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2648c5df96a5SBarry Smith   PetscErrorCode    ierr;
2649a9fe9ddaSSatish Balay 
2650a9fe9ddaSSatish Balay   PetscFunctionBegin;
26518208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
26528208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2653c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
265449d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
26556718818eSStefano Zampini   ierr = MatDenseGetArrayRead(A,&av);CHKERRQ(ierr);
26566718818eSStefano Zampini   ierr = MatDenseGetArrayRead(B,&bv);CHKERRQ(ierr);
26576718818eSStefano Zampini   ierr = MatDenseGetArrayWrite(C,&cv);CHKERRQ(ierr);
26586718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
26596718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&av);CHKERRQ(ierr);
26606718818eSStefano Zampini   ierr = MatDenseRestoreArrayRead(B,&bv);CHKERRQ(ierr);
26616718818eSStefano Zampini   ierr = MatDenseRestoreArrayWrite(C,&cv);CHKERRQ(ierr);
2662ca15aa20SStefano Zampini   ierr = PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1));CHKERRQ(ierr);
2663a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2664a9fe9ddaSSatish Balay }
2665985db425SBarry Smith 
26664222ddf1SHong Zhang /* ----------------------------------------------- */
26674222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
26684222ddf1SHong Zhang {
26694222ddf1SHong Zhang   PetscFunctionBegin;
26704222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
26714222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
26724222ddf1SHong Zhang   PetscFunctionReturn(0);
26734222ddf1SHong Zhang }
26744222ddf1SHong Zhang 
26754222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
26764222ddf1SHong Zhang {
26774222ddf1SHong Zhang   PetscFunctionBegin;
26784222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
26794222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
26804222ddf1SHong Zhang   PetscFunctionReturn(0);
26814222ddf1SHong Zhang }
26824222ddf1SHong Zhang 
26834222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
26844222ddf1SHong Zhang {
26854222ddf1SHong Zhang   PetscFunctionBegin;
26864222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
26874222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
26884222ddf1SHong Zhang   PetscFunctionReturn(0);
26894222ddf1SHong Zhang }
26904222ddf1SHong Zhang 
26914222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
26924222ddf1SHong Zhang {
26934222ddf1SHong Zhang   PetscErrorCode ierr;
26944222ddf1SHong Zhang   Mat_Product    *product = C->product;
26954222ddf1SHong Zhang 
26964222ddf1SHong Zhang   PetscFunctionBegin;
26974222ddf1SHong Zhang   switch (product->type) {
26984222ddf1SHong Zhang   case MATPRODUCT_AB:
26994222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AB(C);CHKERRQ(ierr);
27004222ddf1SHong Zhang     break;
27014222ddf1SHong Zhang   case MATPRODUCT_AtB:
27024222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_AtB(C);CHKERRQ(ierr);
27034222ddf1SHong Zhang     break;
27044222ddf1SHong Zhang   case MATPRODUCT_ABt:
27054222ddf1SHong Zhang     ierr = MatProductSetFromOptions_SeqDense_ABt(C);CHKERRQ(ierr);
27064222ddf1SHong Zhang     break;
27076718818eSStefano Zampini   default:
27084222ddf1SHong Zhang     break;
27094222ddf1SHong Zhang   }
27104222ddf1SHong Zhang   PetscFunctionReturn(0);
27114222ddf1SHong Zhang }
27124222ddf1SHong Zhang /* ----------------------------------------------- */
27134222ddf1SHong Zhang 
2714e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2715985db425SBarry Smith {
2716985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2717985db425SBarry Smith   PetscErrorCode     ierr;
2718d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2719985db425SBarry Smith   PetscScalar        *x;
2720ca15aa20SStefano Zampini   const PetscScalar *aa;
2721985db425SBarry Smith 
2722985db425SBarry Smith   PetscFunctionBegin;
2723e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2724985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2725985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2726ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2727e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2728985db425SBarry Smith   for (i=0; i<m; i++) {
2729985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2730985db425SBarry Smith     for (j=1; j<n; j++) {
2731ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2732985db425SBarry Smith     }
2733985db425SBarry Smith   }
2734ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2735985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2736985db425SBarry Smith   PetscFunctionReturn(0);
2737985db425SBarry Smith }
2738985db425SBarry Smith 
2739e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2740985db425SBarry Smith {
2741985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2742985db425SBarry Smith   PetscErrorCode    ierr;
2743d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2744985db425SBarry Smith   PetscScalar       *x;
2745985db425SBarry Smith   PetscReal         atmp;
2746ca15aa20SStefano Zampini   const PetscScalar *aa;
2747985db425SBarry Smith 
2748985db425SBarry Smith   PetscFunctionBegin;
2749e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2750985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2751985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2752ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2753e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2754985db425SBarry Smith   for (i=0; i<m; i++) {
27559189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2756985db425SBarry Smith     for (j=1; j<n; j++) {
2757ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2758985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2759985db425SBarry Smith     }
2760985db425SBarry Smith   }
2761ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2762985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2763985db425SBarry Smith   PetscFunctionReturn(0);
2764985db425SBarry Smith }
2765985db425SBarry Smith 
2766e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2767985db425SBarry Smith {
2768985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2769985db425SBarry Smith   PetscErrorCode    ierr;
2770d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2771985db425SBarry Smith   PetscScalar       *x;
2772ca15aa20SStefano Zampini   const PetscScalar *aa;
2773985db425SBarry Smith 
2774985db425SBarry Smith   PetscFunctionBegin;
2775e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2776ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
2777985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2778985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2779e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2780985db425SBarry Smith   for (i=0; i<m; i++) {
2781985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2782985db425SBarry Smith     for (j=1; j<n; j++) {
2783ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2784985db425SBarry Smith     }
2785985db425SBarry Smith   }
2786985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2787ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
2788985db425SBarry Smith   PetscFunctionReturn(0);
2789985db425SBarry Smith }
2790985db425SBarry Smith 
2791637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
27928d0534beSBarry Smith {
27938d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
27948d0534beSBarry Smith   PetscErrorCode    ierr;
27958d0534beSBarry Smith   PetscScalar       *x;
2796ca15aa20SStefano Zampini   const PetscScalar *aa;
27978d0534beSBarry Smith 
27988d0534beSBarry Smith   PetscFunctionBegin;
2799e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2800ca15aa20SStefano Zampini   ierr = MatDenseGetArrayRead(A,&aa);CHKERRQ(ierr);
28018d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2802ca15aa20SStefano Zampini   ierr = PetscArraycpy(x,aa+col*a->lda,A->rmap->n);CHKERRQ(ierr);
28038d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2804ca15aa20SStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&aa);CHKERRQ(ierr);
28058d0534beSBarry Smith   PetscFunctionReturn(0);
28068d0534beSBarry Smith }
28078d0534beSBarry Smith 
280852c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
28090716a85fSBarry Smith {
28100716a85fSBarry Smith   PetscErrorCode    ierr;
28110716a85fSBarry Smith   PetscInt          i,j,m,n;
28121683a169SBarry Smith   const PetscScalar *a;
28130716a85fSBarry Smith 
28140716a85fSBarry Smith   PetscFunctionBegin;
28150716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2816580bdb30SBarry Smith   ierr = PetscArrayzero(norms,n);CHKERRQ(ierr);
28171683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
28180716a85fSBarry Smith   if (type == NORM_2) {
28190716a85fSBarry Smith     for (i=0; i<n; i++) {
28200716a85fSBarry Smith       for (j=0; j<m; j++) {
28210716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
28220716a85fSBarry Smith       }
28230716a85fSBarry Smith       a += m;
28240716a85fSBarry Smith     }
28250716a85fSBarry Smith   } else if (type == NORM_1) {
28260716a85fSBarry Smith     for (i=0; i<n; i++) {
28270716a85fSBarry Smith       for (j=0; j<m; j++) {
28280716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
28290716a85fSBarry Smith       }
28300716a85fSBarry Smith       a += m;
28310716a85fSBarry Smith     }
28320716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
28330716a85fSBarry Smith     for (i=0; i<n; i++) {
28340716a85fSBarry Smith       for (j=0; j<m; j++) {
28350716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
28360716a85fSBarry Smith       }
28370716a85fSBarry Smith       a += m;
28380716a85fSBarry Smith     }
2839ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
28401683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&a);CHKERRQ(ierr);
28410716a85fSBarry Smith   if (type == NORM_2) {
28428f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
28430716a85fSBarry Smith   }
28440716a85fSBarry Smith   PetscFunctionReturn(0);
28450716a85fSBarry Smith }
28460716a85fSBarry Smith 
284773a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
284873a71a0fSBarry Smith {
284973a71a0fSBarry Smith   PetscErrorCode ierr;
285073a71a0fSBarry Smith   PetscScalar    *a;
2851637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
285273a71a0fSBarry Smith 
285373a71a0fSBarry Smith   PetscFunctionBegin;
285473a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
2855637a0070SStefano Zampini   ierr = MatDenseGetLDA(x,&lda);CHKERRQ(ierr);
28568c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
2857637a0070SStefano Zampini   for (j=0; j<n; j++) {
2858637a0070SStefano Zampini     for (i=0; i<m; i++) {
2859637a0070SStefano Zampini       ierr = PetscRandomGetValue(rctx,a+j*lda+i);CHKERRQ(ierr);
2860637a0070SStefano Zampini     }
286173a71a0fSBarry Smith   }
28628c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
286373a71a0fSBarry Smith   PetscFunctionReturn(0);
286473a71a0fSBarry Smith }
286573a71a0fSBarry Smith 
28663b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
28673b49f96aSBarry Smith {
28683b49f96aSBarry Smith   PetscFunctionBegin;
28693b49f96aSBarry Smith   *missing = PETSC_FALSE;
28703b49f96aSBarry Smith   PetscFunctionReturn(0);
28713b49f96aSBarry Smith }
287273a71a0fSBarry Smith 
2873ca15aa20SStefano Zampini /* vals is not const */
2874af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
287586aefd0dSHong Zhang {
2876ca15aa20SStefano Zampini   PetscErrorCode ierr;
287786aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2878ca15aa20SStefano Zampini   PetscScalar    *v;
287986aefd0dSHong Zhang 
288086aefd0dSHong Zhang   PetscFunctionBegin;
288186aefd0dSHong Zhang   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2882ca15aa20SStefano Zampini   ierr  = MatDenseGetArray(A,&v);CHKERRQ(ierr);
2883ca15aa20SStefano Zampini   *vals = v+col*a->lda;
2884ca15aa20SStefano Zampini   ierr  = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
288586aefd0dSHong Zhang   PetscFunctionReturn(0);
288686aefd0dSHong Zhang }
288786aefd0dSHong Zhang 
2888af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
288986aefd0dSHong Zhang {
289086aefd0dSHong Zhang   PetscFunctionBegin;
2891f4259b30SLisandro Dalcin   *vals = NULL; /* user cannot accidently use the array later */
289286aefd0dSHong Zhang   PetscFunctionReturn(0);
289386aefd0dSHong Zhang }
2894abc3b08eSStefano Zampini 
2895289bc588SBarry Smith /* -------------------------------------------------------------------*/
2896a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2897905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2898905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2899905e6a2fSBarry Smith                                         MatMult_SeqDense,
290097304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
29017c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
29027c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2903f4259b30SLisandro Dalcin                                         NULL,
2904f4259b30SLisandro Dalcin                                         NULL,
2905f4259b30SLisandro Dalcin                                         NULL,
2906f4259b30SLisandro Dalcin                                 /* 10*/ NULL,
2907905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2908905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
290941f059aeSBarry Smith                                         MatSOR_SeqDense,
2910ec8511deSBarry Smith                                         MatTranspose_SeqDense,
291197304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2912905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2913905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2914905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2915905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2916c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2917c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2918905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2919905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2920d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2921f4259b30SLisandro Dalcin                                         NULL,
2922f4259b30SLisandro Dalcin                                         NULL,
2923f4259b30SLisandro Dalcin                                         NULL,
2924f4259b30SLisandro Dalcin                                         NULL,
29254994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2926f4259b30SLisandro Dalcin                                         NULL,
2927f4259b30SLisandro Dalcin                                         NULL,
2928f4259b30SLisandro Dalcin                                         NULL,
2929f4259b30SLisandro Dalcin                                         NULL,
2930d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2931f4259b30SLisandro Dalcin                                         NULL,
2932f4259b30SLisandro Dalcin                                         NULL,
2933f4259b30SLisandro Dalcin                                         NULL,
2934f4259b30SLisandro Dalcin                                         NULL,
2935d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
29367dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2937f4259b30SLisandro Dalcin                                         NULL,
29384b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2939a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2940d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2941a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
29427d68702bSBarry Smith                                         MatShift_Basic,
2943f4259b30SLisandro Dalcin                                         NULL,
29443f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
294573a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2946f4259b30SLisandro Dalcin                                         NULL,
2947f4259b30SLisandro Dalcin                                         NULL,
2948f4259b30SLisandro Dalcin                                         NULL,
2949f4259b30SLisandro Dalcin                                         NULL,
2950f4259b30SLisandro Dalcin                                 /* 54*/ NULL,
2951f4259b30SLisandro Dalcin                                         NULL,
2952f4259b30SLisandro Dalcin                                         NULL,
2953f4259b30SLisandro Dalcin                                         NULL,
2954f4259b30SLisandro Dalcin                                         NULL,
2955023c16fcSToby Isaac                                 /* 59*/ MatCreateSubMatrix_SeqDense,
2956e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2957e03a110bSBarry Smith                                         MatView_SeqDense,
2958f4259b30SLisandro Dalcin                                         NULL,
2959f4259b30SLisandro Dalcin                                         NULL,
2960f4259b30SLisandro Dalcin                                 /* 64*/ NULL,
2961f4259b30SLisandro Dalcin                                         NULL,
2962f4259b30SLisandro Dalcin                                         NULL,
2963f4259b30SLisandro Dalcin                                         NULL,
2964f4259b30SLisandro Dalcin                                         NULL,
2965d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
2966f4259b30SLisandro Dalcin                                         NULL,
2967f4259b30SLisandro Dalcin                                         NULL,
2968f4259b30SLisandro Dalcin                                         NULL,
2969f4259b30SLisandro Dalcin                                         NULL,
2970f4259b30SLisandro Dalcin                                 /* 74*/ NULL,
2971f4259b30SLisandro Dalcin                                         NULL,
2972f4259b30SLisandro Dalcin                                         NULL,
2973f4259b30SLisandro Dalcin                                         NULL,
2974f4259b30SLisandro Dalcin                                         NULL,
2975f4259b30SLisandro Dalcin                                 /* 79*/ NULL,
2976f4259b30SLisandro Dalcin                                         NULL,
2977f4259b30SLisandro Dalcin                                         NULL,
2978f4259b30SLisandro Dalcin                                         NULL,
29795bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2980637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
29811cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2982f4259b30SLisandro Dalcin                                         NULL,
2983f4259b30SLisandro Dalcin                                         NULL,
2984f4259b30SLisandro Dalcin                                         NULL,
2985f4259b30SLisandro Dalcin                                 /* 89*/ NULL,
2986f4259b30SLisandro Dalcin                                         NULL,
2987a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
2988f4259b30SLisandro Dalcin                                         NULL,
2989f4259b30SLisandro Dalcin                                         NULL,
2990f4259b30SLisandro Dalcin                                 /* 94*/ NULL,
2991f4259b30SLisandro Dalcin                                         NULL,
2992f4259b30SLisandro Dalcin                                         NULL,
299369f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2994f4259b30SLisandro Dalcin                                         NULL,
29954222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2996f4259b30SLisandro Dalcin                                         NULL,
2997f4259b30SLisandro Dalcin                                         NULL,
2998ba337c44SJed Brown                                         MatConjugate_SeqDense,
2999f4259b30SLisandro Dalcin                                         NULL,
3000f4259b30SLisandro Dalcin                                 /*104*/ NULL,
3001ba337c44SJed Brown                                         MatRealPart_SeqDense,
3002ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
3003f4259b30SLisandro Dalcin                                         NULL,
3004f4259b30SLisandro Dalcin                                         NULL,
3005f4259b30SLisandro Dalcin                                 /*109*/ NULL,
3006f4259b30SLisandro Dalcin                                         NULL,
30078d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
3008aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
30093b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
3010f4259b30SLisandro Dalcin                                 /*114*/ NULL,
3011f4259b30SLisandro Dalcin                                         NULL,
3012f4259b30SLisandro Dalcin                                         NULL,
3013f4259b30SLisandro Dalcin                                         NULL,
3014f4259b30SLisandro Dalcin                                         NULL,
3015f4259b30SLisandro Dalcin                                 /*119*/ NULL,
3016f4259b30SLisandro Dalcin                                         NULL,
3017f4259b30SLisandro Dalcin                                         NULL,
3018f4259b30SLisandro Dalcin                                         NULL,
3019f4259b30SLisandro Dalcin                                         NULL,
3020f4259b30SLisandro Dalcin                                 /*124*/ NULL,
30215df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
3022f4259b30SLisandro Dalcin                                         NULL,
3023f4259b30SLisandro Dalcin                                         NULL,
3024f4259b30SLisandro Dalcin                                         NULL,
3025f4259b30SLisandro Dalcin                                 /*129*/ NULL,
3026f4259b30SLisandro Dalcin                                         NULL,
3027f4259b30SLisandro Dalcin                                         NULL,
302875648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
3029f4259b30SLisandro Dalcin                                         NULL,
3030f4259b30SLisandro Dalcin                                 /*134*/ NULL,
3031f4259b30SLisandro Dalcin                                         NULL,
3032f4259b30SLisandro Dalcin                                         NULL,
3033f4259b30SLisandro Dalcin                                         NULL,
3034f4259b30SLisandro Dalcin                                         NULL,
3035f4259b30SLisandro Dalcin                                 /*139*/ NULL,
3036f4259b30SLisandro Dalcin                                         NULL,
3037f4259b30SLisandro Dalcin                                         NULL,
3038f4259b30SLisandro Dalcin                                         NULL,
3039f4259b30SLisandro Dalcin                                         NULL,
30404222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
3041f4259b30SLisandro Dalcin                                 /*145*/ NULL,
3042f4259b30SLisandro Dalcin                                         NULL,
3043f4259b30SLisandro Dalcin                                         NULL
3044985db425SBarry Smith };
304590ace30eSBarry Smith 
30464b828684SBarry Smith /*@C
3047fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
3048d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
3049d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
3050289bc588SBarry Smith 
3051d083f849SBarry Smith    Collective
3052db81eaa0SLois Curfman McInnes 
305320563c6bSBarry Smith    Input Parameters:
3054db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
30550c775827SLois Curfman McInnes .  m - number of rows
305618f449edSLois Curfman McInnes .  n - number of columns
30570298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
3058dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
305920563c6bSBarry Smith 
306020563c6bSBarry Smith    Output Parameter:
306144cd7ae7SLois Curfman McInnes .  A - the matrix
306220563c6bSBarry Smith 
3063b259b22eSLois Curfman McInnes    Notes:
306418f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
306518f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
30660298fd71SBarry Smith    set data=NULL.
306718f449edSLois Curfman McInnes 
3068027ccd11SLois Curfman McInnes    Level: intermediate
3069027ccd11SLois Curfman McInnes 
307069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
307120563c6bSBarry Smith @*/
30727087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
3073289bc588SBarry Smith {
3074dfbe8321SBarry Smith   PetscErrorCode ierr;
30753b2fbd54SBarry Smith 
30763a40ed3dSBarry Smith   PetscFunctionBegin;
3077f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3078f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3079273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
3080273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
3081273d9f13SBarry Smith   PetscFunctionReturn(0);
3082273d9f13SBarry Smith }
3083273d9f13SBarry Smith 
3084273d9f13SBarry Smith /*@C
3085273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
3086273d9f13SBarry Smith 
3087d083f849SBarry Smith    Collective
3088273d9f13SBarry Smith 
3089273d9f13SBarry Smith    Input Parameters:
30901c4f3114SJed Brown +  B - the matrix
30910298fd71SBarry Smith -  data - the array (or NULL)
3092273d9f13SBarry Smith 
3093273d9f13SBarry Smith    Notes:
3094273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
3095273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
3096284134d9SBarry Smith    need not call this routine.
3097273d9f13SBarry Smith 
3098273d9f13SBarry Smith    Level: intermediate
3099273d9f13SBarry Smith 
3100ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
3101867c911aSBarry Smith 
3102273d9f13SBarry Smith @*/
31037087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
3104273d9f13SBarry Smith {
31054ac538c5SBarry Smith   PetscErrorCode ierr;
3106a23d5eceSKris Buschelman 
3107a23d5eceSKris Buschelman   PetscFunctionBegin;
3108d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
31094ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
3110a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3111a23d5eceSKris Buschelman }
3112a23d5eceSKris Buschelman 
31137087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
3114a23d5eceSKris Buschelman {
3115ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
3116dfbe8321SBarry Smith   PetscErrorCode ierr;
3117273d9f13SBarry Smith 
3118273d9f13SBarry Smith   PetscFunctionBegin;
3119616b8fbbSStefano Zampini   if (b->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
3120273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
3121a868139aSShri Abhyankar 
312234ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
312334ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
312434ef9618SShri Abhyankar 
3125ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
312686d161a7SShri Abhyankar 
3127ad16ce7aSStefano Zampini   ierr = PetscIntMultError(b->lda,B->cmap->n,NULL);CHKERRQ(ierr);
31289e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
31299e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3130ad16ce7aSStefano Zampini     ierr = PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v);CHKERRQ(ierr);
3131ad16ce7aSStefano Zampini     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
31322205254eSKarl Rupp 
31339e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
3134273d9f13SBarry Smith   } else { /* user-allocated storage */
31359e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
3136273d9f13SBarry Smith     b->v          = data;
3137273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
3138273d9f13SBarry Smith   }
31390450473dSBarry Smith   B->assembled = PETSC_TRUE;
3140273d9f13SBarry Smith   PetscFunctionReturn(0);
3141273d9f13SBarry Smith }
3142273d9f13SBarry Smith 
314365b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
3144cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
31458baccfbdSHong Zhang {
3146d77f618aSHong Zhang   Mat               mat_elemental;
3147d77f618aSHong Zhang   PetscErrorCode    ierr;
31481683a169SBarry Smith   const PetscScalar *array;
31491683a169SBarry Smith   PetscScalar       *v_colwise;
3150d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
3151d77f618aSHong Zhang 
31528baccfbdSHong Zhang   PetscFunctionBegin;
3153d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
31541683a169SBarry Smith   ierr = MatDenseGetArrayRead(A,&array);CHKERRQ(ierr);
3155d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
3156d77f618aSHong Zhang   k = 0;
3157d77f618aSHong Zhang   for (j=0; j<N; j++) {
3158d77f618aSHong Zhang     cols[j] = j;
3159d77f618aSHong Zhang     for (i=0; i<M; i++) {
3160d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
3161d77f618aSHong Zhang     }
3162d77f618aSHong Zhang   }
3163d77f618aSHong Zhang   for (i=0; i<M; i++) {
3164d77f618aSHong Zhang     rows[i] = i;
3165d77f618aSHong Zhang   }
31661683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(A,&array);CHKERRQ(ierr);
3167d77f618aSHong Zhang 
3168d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
3169d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
3170d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
3171d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
3172d77f618aSHong Zhang 
3173d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
3174d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
3175d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3176d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3177d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
3178d77f618aSHong Zhang 
3179511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
318028be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
3181d77f618aSHong Zhang   } else {
3182d77f618aSHong Zhang     *newmat = mat_elemental;
3183d77f618aSHong Zhang   }
31848baccfbdSHong Zhang   PetscFunctionReturn(0);
31858baccfbdSHong Zhang }
318665b80a83SHong Zhang #endif
31878baccfbdSHong Zhang 
318817359960SJose E. Roman PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
31891b807ce4Svictorle {
31901b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
31917422da62SJose E. Roman   PetscBool    data;
319221a2c019SBarry Smith 
31931b807ce4Svictorle   PetscFunctionBegin;
31947422da62SJose E. Roman   data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE);
31957422da62SJose E. Roman   if (!b->user_alloc && data && b->lda!=lda) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage");
3196e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
31971b807ce4Svictorle   b->lda = lda;
31981b807ce4Svictorle   PetscFunctionReturn(0);
31991b807ce4Svictorle }
32001b807ce4Svictorle 
3201d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3202d528f656SJakub Kruzik {
3203d528f656SJakub Kruzik   PetscErrorCode ierr;
3204d528f656SJakub Kruzik   PetscMPIInt    size;
3205d528f656SJakub Kruzik 
3206d528f656SJakub Kruzik   PetscFunctionBegin;
3207ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
3208d528f656SJakub Kruzik   if (size == 1) {
3209d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
3210d528f656SJakub Kruzik       ierr = MatDuplicate(inmat,MAT_COPY_VALUES,outmat);CHKERRQ(ierr);
3211d528f656SJakub Kruzik     } else {
3212d528f656SJakub Kruzik       ierr = MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
3213d528f656SJakub Kruzik     }
3214d528f656SJakub Kruzik   } else {
3215d528f656SJakub Kruzik     ierr = MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
3216d528f656SJakub Kruzik   }
3217d528f656SJakub Kruzik   PetscFunctionReturn(0);
3218d528f656SJakub Kruzik }
3219d528f656SJakub Kruzik 
32206947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32216947451fSStefano Zampini {
32226947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32236947451fSStefano Zampini   PetscErrorCode ierr;
32246947451fSStefano Zampini 
32256947451fSStefano Zampini   PetscFunctionBegin;
32265ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32275ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32286947451fSStefano Zampini   if (!a->cvec) {
32296947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3230616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32316947451fSStefano Zampini   }
32326947451fSStefano Zampini   a->vecinuse = col + 1;
32336947451fSStefano Zampini   ierr = MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32346947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32356947451fSStefano Zampini   *v   = a->cvec;
32366947451fSStefano Zampini   PetscFunctionReturn(0);
32376947451fSStefano Zampini }
32386947451fSStefano Zampini 
32396947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
32406947451fSStefano Zampini {
32416947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32426947451fSStefano Zampini   PetscErrorCode ierr;
32436947451fSStefano Zampini 
32446947451fSStefano Zampini   PetscFunctionBegin;
32455ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32466947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32476947451fSStefano Zampini   a->vecinuse = 0;
32486947451fSStefano Zampini   ierr = MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
32496947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32506947451fSStefano Zampini   *v   = NULL;
32516947451fSStefano Zampini   PetscFunctionReturn(0);
32526947451fSStefano Zampini }
32536947451fSStefano Zampini 
32546947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32556947451fSStefano Zampini {
32566947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32576947451fSStefano Zampini   PetscErrorCode ierr;
32586947451fSStefano Zampini 
32596947451fSStefano Zampini   PetscFunctionBegin;
32605ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32615ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32626947451fSStefano Zampini   if (!a->cvec) {
32636947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3264616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
32656947451fSStefano Zampini   }
32666947451fSStefano Zampini   a->vecinuse = col + 1;
32676947451fSStefano Zampini   ierr = MatDenseGetArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32686947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
32696947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
32706947451fSStefano Zampini   *v   = a->cvec;
32716947451fSStefano Zampini   PetscFunctionReturn(0);
32726947451fSStefano Zampini }
32736947451fSStefano Zampini 
32746947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
32756947451fSStefano Zampini {
32766947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32776947451fSStefano Zampini   PetscErrorCode ierr;
32786947451fSStefano Zampini 
32796947451fSStefano Zampini   PetscFunctionBegin;
32805ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
32816947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32826947451fSStefano Zampini   a->vecinuse = 0;
32836947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(A,&a->ptrinuse);CHKERRQ(ierr);
32846947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
32856947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
32866947451fSStefano Zampini   *v   = NULL;
32876947451fSStefano Zampini   PetscFunctionReturn(0);
32886947451fSStefano Zampini }
32896947451fSStefano Zampini 
32906947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
32916947451fSStefano Zampini {
32926947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32936947451fSStefano Zampini   PetscErrorCode ierr;
32946947451fSStefano Zampini 
32956947451fSStefano Zampini   PetscFunctionBegin;
32965ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
32975ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32986947451fSStefano Zampini   if (!a->cvec) {
32996947451fSStefano Zampini     ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec);CHKERRQ(ierr);
3300616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
33016947451fSStefano Zampini   }
33026947451fSStefano Zampini   a->vecinuse = col + 1;
33036947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33046947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda);CHKERRQ(ierr);
33056947451fSStefano Zampini   *v   = a->cvec;
33066947451fSStefano Zampini   PetscFunctionReturn(0);
33076947451fSStefano Zampini }
33086947451fSStefano Zampini 
33096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
33106947451fSStefano Zampini {
33116947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33126947451fSStefano Zampini   PetscErrorCode ierr;
33136947451fSStefano Zampini 
33146947451fSStefano Zampini   PetscFunctionBegin;
33155ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
33166947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
33176947451fSStefano Zampini   a->vecinuse = 0;
33186947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
33196947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
33206947451fSStefano Zampini   *v   = NULL;
33216947451fSStefano Zampini   PetscFunctionReturn(0);
33226947451fSStefano Zampini }
33236947451fSStefano Zampini 
33245ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
33255ea7661aSPierre Jolivet {
33265ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33275ea7661aSPierre Jolivet   PetscErrorCode ierr;
33285ea7661aSPierre Jolivet 
33295ea7661aSPierre Jolivet   PetscFunctionBegin;
33305ea7661aSPierre Jolivet   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
33315ea7661aSPierre Jolivet   if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
33325ea7661aSPierre Jolivet   if (a->cmat && cend-cbegin != a->cmat->cmap->N) {
33335ea7661aSPierre Jolivet     ierr = MatDestroy(&a->cmat);CHKERRQ(ierr);
33345ea7661aSPierre Jolivet   }
33355ea7661aSPierre Jolivet   if (!a->cmat) {
3336616b8fbbSStefano Zampini     ierr = MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->v + (size_t)cbegin * (size_t)a->lda,&a->cmat);CHKERRQ(ierr);
3337616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr);
33385ea7661aSPierre Jolivet   } else {
3339616b8fbbSStefano Zampini     ierr = MatDensePlaceArray(a->cmat,a->v + (size_t)cbegin * (size_t)a->lda);CHKERRQ(ierr);
33405ea7661aSPierre Jolivet   }
3341616b8fbbSStefano Zampini   ierr = MatDenseSetLDA(a->cmat,a->lda);CHKERRQ(ierr);
33425ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
33435ea7661aSPierre Jolivet   *v = a->cmat;
33445ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33455ea7661aSPierre Jolivet }
33465ea7661aSPierre Jolivet 
33475ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v)
33485ea7661aSPierre Jolivet {
33495ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
33505ea7661aSPierre Jolivet   PetscErrorCode ierr;
33515ea7661aSPierre Jolivet 
33525ea7661aSPierre Jolivet   PetscFunctionBegin;
33535ea7661aSPierre Jolivet   if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first");
33545ea7661aSPierre Jolivet   if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix");
3355616b8fbbSStefano Zampini   if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()");
33565ea7661aSPierre Jolivet   a->matinuse = 0;
33575ea7661aSPierre Jolivet   ierr = MatDenseResetArray(a->cmat);CHKERRQ(ierr);
33585ea7661aSPierre Jolivet   *v   = NULL;
33595ea7661aSPierre Jolivet   PetscFunctionReturn(0);
33605ea7661aSPierre Jolivet }
33615ea7661aSPierre Jolivet 
33620bad9183SKris Buschelman /*MC
3363fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
33640bad9183SKris Buschelman 
33650bad9183SKris Buschelman    Options Database Keys:
33660bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
33670bad9183SKris Buschelman 
33680bad9183SKris Buschelman   Level: beginner
33690bad9183SKris Buschelman 
337089665df3SBarry Smith .seealso: MatCreateSeqDense()
337189665df3SBarry Smith 
33720bad9183SKris Buschelman M*/
3373ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
3374273d9f13SBarry Smith {
3375273d9f13SBarry Smith   Mat_SeqDense   *b;
3376dfbe8321SBarry Smith   PetscErrorCode ierr;
33777c334f02SBarry Smith   PetscMPIInt    size;
3378273d9f13SBarry Smith 
3379273d9f13SBarry Smith   PetscFunctionBegin;
3380ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
3381e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
338255659b69SBarry Smith 
3383b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
3384549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
338544cd7ae7SLois Curfman McInnes   B->data = (void*)b;
338618f449edSLois Curfman McInnes 
3387273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
33884e220ebcSLois Curfman McInnes 
33894905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense);CHKERRQ(ierr);
33904905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense);CHKERRQ(ierr);
33914905a7bcSToby Isaac   ierr = PetscObjectComposeFunction((PetscObject)B,"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense);CHKERRQ(ierr);
339249a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense);CHKERRQ(ierr);
3393ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense);CHKERRQ(ierr);
3394bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
33958572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3396d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
3397d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
3398d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense);CHKERRQ(ierr);
33998572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
3400715b7558SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
34016947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
34026947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
3403bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
34048baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
34058baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
34068baccfbdSHong Zhang #endif
3407d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
3408d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr);
3409d24d4204SJose E. Roman #endif
34102bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
34112bf066beSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA);CHKERRQ(ierr);
34124222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34134222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
3414637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34152bf066beSStefano Zampini #endif
3416bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
34174222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense);CHKERRQ(ierr);
34184222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense);CHKERRQ(ierr);
34194222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
34204222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense);CHKERRQ(ierr);
342196e6d5c4SRichard Tran Mills 
3422af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense);CHKERRQ(ierr);
3423af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense);CHKERRQ(ierr);
34246947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense);CHKERRQ(ierr);
34256947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense);CHKERRQ(ierr);
34266947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense);CHKERRQ(ierr);
34276947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense);CHKERRQ(ierr);
34286947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense);CHKERRQ(ierr);
34296947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense);CHKERRQ(ierr);
34305ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense);CHKERRQ(ierr);
34315ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense);CHKERRQ(ierr);
343217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
34333a40ed3dSBarry Smith   PetscFunctionReturn(0);
3434289bc588SBarry Smith }
343586aefd0dSHong Zhang 
343686aefd0dSHong Zhang /*@C
3437af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
343886aefd0dSHong Zhang 
343986aefd0dSHong Zhang    Not Collective
344086aefd0dSHong Zhang 
34415ea7661aSPierre Jolivet    Input Parameters:
344286aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
344386aefd0dSHong Zhang -  col - column index
344486aefd0dSHong Zhang 
344586aefd0dSHong Zhang    Output Parameter:
344686aefd0dSHong Zhang .  vals - pointer to the data
344786aefd0dSHong Zhang 
344886aefd0dSHong Zhang    Level: intermediate
344986aefd0dSHong Zhang 
345086aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
345186aefd0dSHong Zhang @*/
345286aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
345386aefd0dSHong Zhang {
345486aefd0dSHong Zhang   PetscErrorCode ierr;
345586aefd0dSHong Zhang 
345686aefd0dSHong Zhang   PetscFunctionBegin;
3457d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3458d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3459d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
346086aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));CHKERRQ(ierr);
346186aefd0dSHong Zhang   PetscFunctionReturn(0);
346286aefd0dSHong Zhang }
346386aefd0dSHong Zhang 
346486aefd0dSHong Zhang /*@C
346586aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
346686aefd0dSHong Zhang 
346786aefd0dSHong Zhang    Not Collective
346886aefd0dSHong Zhang 
346986aefd0dSHong Zhang    Input Parameter:
347086aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
347186aefd0dSHong Zhang 
347286aefd0dSHong Zhang    Output Parameter:
347386aefd0dSHong Zhang .  vals - pointer to the data
347486aefd0dSHong Zhang 
347586aefd0dSHong Zhang    Level: intermediate
347686aefd0dSHong Zhang 
347786aefd0dSHong Zhang .seealso: MatDenseGetColumn()
347886aefd0dSHong Zhang @*/
347986aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
348086aefd0dSHong Zhang {
348186aefd0dSHong Zhang   PetscErrorCode ierr;
348286aefd0dSHong Zhang 
348386aefd0dSHong Zhang   PetscFunctionBegin;
3484d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3485d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
348686aefd0dSHong Zhang   ierr = PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));CHKERRQ(ierr);
348786aefd0dSHong Zhang   PetscFunctionReturn(0);
348886aefd0dSHong Zhang }
34896947451fSStefano Zampini 
34906947451fSStefano Zampini /*@C
34916947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
34926947451fSStefano Zampini 
34936947451fSStefano Zampini    Collective
34946947451fSStefano Zampini 
34955ea7661aSPierre Jolivet    Input Parameters:
34966947451fSStefano Zampini +  mat - the Mat object
34976947451fSStefano Zampini -  col - the column index
34986947451fSStefano Zampini 
34996947451fSStefano Zampini    Output Parameter:
35006947451fSStefano Zampini .  v - the vector
35016947451fSStefano Zampini 
35026947451fSStefano Zampini    Notes:
35036947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
35046947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
35056947451fSStefano Zampini 
35066947451fSStefano Zampini    Level: intermediate
35076947451fSStefano Zampini 
35086947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35096947451fSStefano Zampini @*/
35106947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
35116947451fSStefano Zampini {
35126947451fSStefano Zampini   PetscErrorCode ierr;
35136947451fSStefano Zampini 
35146947451fSStefano Zampini   PetscFunctionBegin;
35156947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35166947451fSStefano Zampini   PetscValidType(A,1);
35176947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35186947451fSStefano Zampini   PetscValidPointer(v,3);
35196947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35206947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35216947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35226947451fSStefano Zampini   PetscFunctionReturn(0);
35236947451fSStefano Zampini }
35246947451fSStefano Zampini 
35256947451fSStefano Zampini /*@C
35266947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
35276947451fSStefano Zampini 
35286947451fSStefano Zampini    Collective
35296947451fSStefano Zampini 
35305ea7661aSPierre Jolivet    Input Parameters:
35316947451fSStefano Zampini +  mat - the Mat object
35326947451fSStefano Zampini .  col - the column index
35336947451fSStefano Zampini -  v - the Vec object
35346947451fSStefano Zampini 
35356947451fSStefano Zampini    Level: intermediate
35366947451fSStefano Zampini 
35376947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35386947451fSStefano Zampini @*/
35396947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
35406947451fSStefano Zampini {
35416947451fSStefano Zampini   PetscErrorCode ierr;
35426947451fSStefano Zampini 
35436947451fSStefano Zampini   PetscFunctionBegin;
35446947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35456947451fSStefano Zampini   PetscValidType(A,1);
35466947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35476947451fSStefano Zampini   PetscValidPointer(v,3);
35486947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35496947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35506947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35516947451fSStefano Zampini   PetscFunctionReturn(0);
35526947451fSStefano Zampini }
35536947451fSStefano Zampini 
35546947451fSStefano Zampini /*@C
35556947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
35566947451fSStefano Zampini 
35576947451fSStefano Zampini    Collective
35586947451fSStefano Zampini 
35595ea7661aSPierre Jolivet    Input Parameters:
35606947451fSStefano Zampini +  mat - the Mat object
35616947451fSStefano Zampini -  col - the column index
35626947451fSStefano Zampini 
35636947451fSStefano Zampini    Output Parameter:
35646947451fSStefano Zampini .  v - the vector
35656947451fSStefano Zampini 
35666947451fSStefano Zampini    Notes:
35676947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
35686947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
35696947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
35706947451fSStefano Zampini 
35716947451fSStefano Zampini    Level: intermediate
35726947451fSStefano Zampini 
35736947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35746947451fSStefano Zampini @*/
35756947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
35766947451fSStefano Zampini {
35776947451fSStefano Zampini   PetscErrorCode ierr;
35786947451fSStefano Zampini 
35796947451fSStefano Zampini   PetscFunctionBegin;
35806947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35816947451fSStefano Zampini   PetscValidType(A,1);
35826947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35836947451fSStefano Zampini   PetscValidPointer(v,3);
35846947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35856947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
35866947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
35876947451fSStefano Zampini   PetscFunctionReturn(0);
35886947451fSStefano Zampini }
35896947451fSStefano Zampini 
35906947451fSStefano Zampini /*@C
35916947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
35926947451fSStefano Zampini 
35936947451fSStefano Zampini    Collective
35946947451fSStefano Zampini 
35955ea7661aSPierre Jolivet    Input Parameters:
35966947451fSStefano Zampini +  mat - the Mat object
35976947451fSStefano Zampini .  col - the column index
35986947451fSStefano Zampini -  v - the Vec object
35996947451fSStefano Zampini 
36006947451fSStefano Zampini    Level: intermediate
36016947451fSStefano Zampini 
36026947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
36036947451fSStefano Zampini @*/
36046947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
36056947451fSStefano Zampini {
36066947451fSStefano Zampini   PetscErrorCode ierr;
36076947451fSStefano Zampini 
36086947451fSStefano Zampini   PetscFunctionBegin;
36096947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36106947451fSStefano Zampini   PetscValidType(A,1);
36116947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36126947451fSStefano Zampini   PetscValidPointer(v,3);
36136947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36146947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36156947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36166947451fSStefano Zampini   PetscFunctionReturn(0);
36176947451fSStefano Zampini }
36186947451fSStefano Zampini 
36196947451fSStefano Zampini /*@C
36206947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
36216947451fSStefano Zampini 
36226947451fSStefano Zampini    Collective
36236947451fSStefano Zampini 
36245ea7661aSPierre Jolivet    Input Parameters:
36256947451fSStefano Zampini +  mat - the Mat object
36266947451fSStefano Zampini -  col - the column index
36276947451fSStefano Zampini 
36286947451fSStefano Zampini    Output Parameter:
36296947451fSStefano Zampini .  v - the vector
36306947451fSStefano Zampini 
36316947451fSStefano Zampini    Notes:
36326947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
36336947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
36346947451fSStefano Zampini 
36356947451fSStefano Zampini    Level: intermediate
36366947451fSStefano Zampini 
36376947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
36386947451fSStefano Zampini @*/
36396947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
36406947451fSStefano Zampini {
36416947451fSStefano Zampini   PetscErrorCode ierr;
36426947451fSStefano Zampini 
36436947451fSStefano Zampini   PetscFunctionBegin;
36446947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36456947451fSStefano Zampini   PetscValidType(A,1);
36466947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36476947451fSStefano Zampini   PetscValidPointer(v,3);
36486947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36496947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36506947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36516947451fSStefano Zampini   PetscFunctionReturn(0);
36526947451fSStefano Zampini }
36536947451fSStefano Zampini 
36546947451fSStefano Zampini /*@C
36556947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
36566947451fSStefano Zampini 
36576947451fSStefano Zampini    Collective
36586947451fSStefano Zampini 
36595ea7661aSPierre Jolivet    Input Parameters:
36606947451fSStefano Zampini +  mat - the Mat object
36616947451fSStefano Zampini .  col - the column index
36626947451fSStefano Zampini -  v - the Vec object
36636947451fSStefano Zampini 
36646947451fSStefano Zampini    Level: intermediate
36656947451fSStefano Zampini 
36666947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
36676947451fSStefano Zampini @*/
36686947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
36696947451fSStefano Zampini {
36706947451fSStefano Zampini   PetscErrorCode ierr;
36716947451fSStefano Zampini 
36726947451fSStefano Zampini   PetscFunctionBegin;
36736947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36746947451fSStefano Zampini   PetscValidType(A,1);
36756947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
36766947451fSStefano Zampini   PetscValidPointer(v,3);
36776947451fSStefano Zampini   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
36786947451fSStefano Zampini   if (col < 0 || col > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %D, should be in [0,%D)",col,A->cmap->N);
36796947451fSStefano Zampini   ierr = PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));CHKERRQ(ierr);
36806947451fSStefano Zampini   PetscFunctionReturn(0);
36816947451fSStefano Zampini }
36825ea7661aSPierre Jolivet 
36835ea7661aSPierre Jolivet /*@C
36845ea7661aSPierre Jolivet    MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat.
36855ea7661aSPierre Jolivet 
36865ea7661aSPierre Jolivet    Collective
36875ea7661aSPierre Jolivet 
36885ea7661aSPierre Jolivet    Input Parameters:
36895ea7661aSPierre Jolivet +  mat - the Mat object
36905ea7661aSPierre Jolivet .  cbegin - the first index in the block
36915ea7661aSPierre Jolivet -  cend - the last index in the block
36925ea7661aSPierre Jolivet 
36935ea7661aSPierre Jolivet    Output Parameter:
36945ea7661aSPierre Jolivet .  v - the matrix
36955ea7661aSPierre Jolivet 
36965ea7661aSPierre Jolivet    Notes:
36975ea7661aSPierre Jolivet      The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed.
36985ea7661aSPierre Jolivet 
36995ea7661aSPierre Jolivet    Level: intermediate
37005ea7661aSPierre Jolivet 
37015ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseRestoreSubMatrix()
37025ea7661aSPierre Jolivet @*/
37035ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
37045ea7661aSPierre Jolivet {
37055ea7661aSPierre Jolivet   PetscErrorCode ierr;
37065ea7661aSPierre Jolivet 
37075ea7661aSPierre Jolivet   PetscFunctionBegin;
37085ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37095ea7661aSPierre Jolivet   PetscValidType(A,1);
37105ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cbegin,2);
37115ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cend,3);
37125ea7661aSPierre Jolivet   PetscValidPointer(v,4);
37135ea7661aSPierre Jolivet   if (!A->preallocated) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
37145ea7661aSPierre Jolivet   if (cbegin < 0 || cbegin > A->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %D, should be in [0,%D)",cbegin,A->cmap->N);
3715616b8fbbSStefano Zampini   if (cend < cbegin || cend > A->cmap->N) SETERRQ3(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %D, should be in [%D,%D)",cend,cbegin,A->cmap->N);
37165ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v));CHKERRQ(ierr);
37175ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37185ea7661aSPierre Jolivet }
37195ea7661aSPierre Jolivet 
37205ea7661aSPierre Jolivet /*@C
37215ea7661aSPierre Jolivet    MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix().
37225ea7661aSPierre Jolivet 
37235ea7661aSPierre Jolivet    Collective
37245ea7661aSPierre Jolivet 
37255ea7661aSPierre Jolivet    Input Parameters:
37265ea7661aSPierre Jolivet +  mat - the Mat object
37275ea7661aSPierre Jolivet -  v - the Mat object
37285ea7661aSPierre Jolivet 
37295ea7661aSPierre Jolivet    Level: intermediate
37305ea7661aSPierre Jolivet 
37315ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseGetSubMatrix()
37325ea7661aSPierre Jolivet @*/
37335ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v)
37345ea7661aSPierre Jolivet {
37355ea7661aSPierre Jolivet   PetscErrorCode ierr;
37365ea7661aSPierre Jolivet 
37375ea7661aSPierre Jolivet   PetscFunctionBegin;
37385ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
37395ea7661aSPierre Jolivet   PetscValidType(A,1);
37405ea7661aSPierre Jolivet   PetscValidPointer(v,2);
37415ea7661aSPierre Jolivet   ierr = PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v));CHKERRQ(ierr);
37425ea7661aSPierre Jolivet   PetscFunctionReturn(0);
37435ea7661aSPierre Jolivet }
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