xref: /petsc/src/mat/impls/dense/seq/dense.c (revision ec1065ed1313a9b9cd7de820fe29091efccf671c)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
367e560aaSBarry Smith /*
467e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
567e560aaSBarry Smith */
6289bc588SBarry Smith 
77c4f633dSBarry Smith #include "../src/mat/impls/dense/seq/dense.h"
8b4c862e0SSatish Balay #include "petscblaslapack.h"
9289bc588SBarry Smith 
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense"
12f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
131987afe7SBarry Smith {
141987afe7SBarry Smith   Mat_SeqDense   *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
15f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
1613f74950SBarry Smith   PetscInt       j;
170805154bSBarry Smith   PetscBLASInt   N,m,ldax,lday,one = 1;
18efee365bSSatish Balay   PetscErrorCode ierr;
193a40ed3dSBarry Smith 
203a40ed3dSBarry Smith   PetscFunctionBegin;
21d0f46423SBarry Smith   N    = PetscBLASIntCast(X->rmap->n*X->cmap->n);
22d0f46423SBarry Smith   m    = PetscBLASIntCast(X->rmap->n);
230805154bSBarry Smith   ldax = PetscBLASIntCast(x->lda);
240805154bSBarry Smith   lday = PetscBLASIntCast(y->lda);
25a5ce6ee0Svictorle   if (ldax>m || lday>m) {
26d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
27f4df32b1SMatthew Knepley       BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one);
28a5ce6ee0Svictorle     }
29a5ce6ee0Svictorle   } else {
30f4df32b1SMatthew Knepley     BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one);
31a5ce6ee0Svictorle   }
320450473dSBarry Smith   ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr);
333a40ed3dSBarry Smith   PetscFunctionReturn(0);
341987afe7SBarry Smith }
351987afe7SBarry Smith 
364a2ae208SSatish Balay #undef __FUNCT__
374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense"
38dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
39289bc588SBarry Smith {
40d0f46423SBarry Smith   PetscInt     N = A->rmap->n*A->cmap->n;
413a40ed3dSBarry Smith 
423a40ed3dSBarry Smith   PetscFunctionBegin;
434e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
444e220ebcSLois Curfman McInnes   info->nz_allocated      = (double)N;
456de62eeeSBarry Smith   info->nz_used           = (double)N;
466de62eeeSBarry Smith   info->nz_unneeded       = (double)0;
474e220ebcSLois Curfman McInnes   info->assemblies        = (double)A->num_ass;
484e220ebcSLois Curfman McInnes   info->mallocs           = 0;
497adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
504e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
514e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
524e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
533a40ed3dSBarry Smith   PetscFunctionReturn(0);
54289bc588SBarry Smith }
55289bc588SBarry Smith 
564a2ae208SSatish Balay #undef __FUNCT__
574a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense"
58f4df32b1SMatthew Knepley PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
5980cd9d93SLois Curfman McInnes {
60273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
61f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
62efee365bSSatish Balay   PetscErrorCode ierr;
630805154bSBarry Smith   PetscBLASInt   one = 1,j,nz,lda = PetscBLASIntCast(a->lda);
6480cd9d93SLois Curfman McInnes 
653a40ed3dSBarry Smith   PetscFunctionBegin;
66d0f46423SBarry Smith   if (lda>A->rmap->n) {
67d0f46423SBarry Smith     nz = PetscBLASIntCast(A->rmap->n);
68d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
69f4df32b1SMatthew Knepley       BLASscal_(&nz,&oalpha,a->v+j*lda,&one);
70a5ce6ee0Svictorle     }
71a5ce6ee0Svictorle   } else {
72d0f46423SBarry Smith     nz = PetscBLASIntCast(A->rmap->n*A->cmap->n);
73f4df32b1SMatthew Knepley     BLASscal_(&nz,&oalpha,a->v,&one);
74a5ce6ee0Svictorle   }
75efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
763a40ed3dSBarry Smith   PetscFunctionReturn(0);
7780cd9d93SLois Curfman McInnes }
7880cd9d93SLois Curfman McInnes 
791cbb95d3SBarry Smith #undef __FUNCT__
801cbb95d3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqDense"
811cbb95d3SBarry Smith PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscTruth *fl)
821cbb95d3SBarry Smith {
831cbb95d3SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
84d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,N;
851cbb95d3SBarry Smith   PetscScalar    *v = a->v;
861cbb95d3SBarry Smith 
871cbb95d3SBarry Smith   PetscFunctionBegin;
881cbb95d3SBarry Smith   *fl = PETSC_FALSE;
89d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
901cbb95d3SBarry Smith   N = a->lda;
911cbb95d3SBarry Smith 
921cbb95d3SBarry Smith   for (i=0; i<m; i++) {
931cbb95d3SBarry Smith     for (j=i+1; j<m; j++) {
941cbb95d3SBarry Smith       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0);
951cbb95d3SBarry Smith     }
961cbb95d3SBarry Smith   }
971cbb95d3SBarry Smith   *fl = PETSC_TRUE;
981cbb95d3SBarry Smith   PetscFunctionReturn(0);
991cbb95d3SBarry Smith }
1001cbb95d3SBarry Smith 
101b24902e0SBarry Smith #undef __FUNCT__
102b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqDense"
103719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
104b24902e0SBarry Smith {
105b24902e0SBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data,*l;
106b24902e0SBarry Smith   PetscErrorCode ierr;
107b24902e0SBarry Smith   PetscInt       lda = (PetscInt)mat->lda,j,m;
108b24902e0SBarry Smith 
109b24902e0SBarry Smith   PetscFunctionBegin;
110719d5645SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,PETSC_NULL);CHKERRQ(ierr);
111b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
112b24902e0SBarry Smith     l = (Mat_SeqDense*)newi->data;
113d0f46423SBarry Smith     if (lda>A->rmap->n) {
114d0f46423SBarry Smith       m = A->rmap->n;
115d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
116b24902e0SBarry Smith 	ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
117b24902e0SBarry Smith       }
118b24902e0SBarry Smith     } else {
119d0f46423SBarry Smith       ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
120b24902e0SBarry Smith     }
121b24902e0SBarry Smith   }
122b24902e0SBarry Smith   newi->assembled = PETSC_TRUE;
123b24902e0SBarry Smith   PetscFunctionReturn(0);
124b24902e0SBarry Smith }
125b24902e0SBarry Smith 
1264a2ae208SSatish Balay #undef __FUNCT__
1274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense"
128dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
12902cad45dSBarry Smith {
1306849ba73SBarry Smith   PetscErrorCode ierr;
13102cad45dSBarry Smith 
1323a40ed3dSBarry Smith   PetscFunctionBegin;
1335c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,newmat);CHKERRQ(ierr);
134d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1355c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
136719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
137b24902e0SBarry Smith   PetscFunctionReturn(0);
138b24902e0SBarry Smith }
139b24902e0SBarry Smith 
1406ee01492SSatish Balay 
1410481f469SBarry Smith extern PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*);
142719d5645SBarry Smith 
1434a2ae208SSatish Balay #undef __FUNCT__
1444a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense"
1450481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
146289bc588SBarry Smith {
1474482741eSBarry Smith   MatFactorInfo  info;
148a093e273SMatthew Knepley   PetscErrorCode ierr;
1493a40ed3dSBarry Smith 
1503a40ed3dSBarry Smith   PetscFunctionBegin;
151c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
152719d5645SBarry Smith   ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr);
1533a40ed3dSBarry Smith   PetscFunctionReturn(0);
154289bc588SBarry Smith }
1556ee01492SSatish Balay 
1560b4b3355SBarry Smith #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense"
158dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy)
159289bc588SBarry Smith {
160c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
1616849ba73SBarry Smith   PetscErrorCode ierr;
16287828ca2SBarry Smith   PetscScalar    *x,*y;
163d0f46423SBarry Smith   PetscBLASInt   one = 1,info,m = PetscBLASIntCast(A->rmap->n);
16467e560aaSBarry Smith 
1653a40ed3dSBarry Smith   PetscFunctionBegin;
1661ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1671ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
168d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1695c9eb25fSBarry Smith   if (A->factor == MAT_FACTOR_LU) {
170ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
17180444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
172ae7cfcebSSatish Balay #else
17371044d3cSBarry Smith     LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
1744ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve");
175ae7cfcebSSatish Balay #endif
1765c9eb25fSBarry Smith   } else if (A->factor == MAT_FACTOR_CHOLESKY){
177ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
17880444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
179ae7cfcebSSatish Balay #else
18071044d3cSBarry Smith     LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
1814ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve");
182ae7cfcebSSatish Balay #endif
183289bc588SBarry Smith   }
18429bbc08cSBarry Smith   else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
1851ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1861ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
187dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
1883a40ed3dSBarry Smith   PetscFunctionReturn(0);
189289bc588SBarry Smith }
1906ee01492SSatish Balay 
1914a2ae208SSatish Balay #undef __FUNCT__
1924a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense"
193dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy)
194da3a660dSBarry Smith {
195c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
196dfbe8321SBarry Smith   PetscErrorCode ierr;
19787828ca2SBarry Smith   PetscScalar    *x,*y;
198d0f46423SBarry Smith   PetscBLASInt   one = 1,info,m = PetscBLASIntCast(A->rmap->n);
19967e560aaSBarry Smith 
2003a40ed3dSBarry Smith   PetscFunctionBegin;
2011ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2021ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
203d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
204752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
205da3a660dSBarry Smith   if (mat->pivots) {
206ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
20780444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
208ae7cfcebSSatish Balay #else
20971044d3cSBarry Smith     LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
2104ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve");
211ae7cfcebSSatish Balay #endif
2127a97a34bSBarry Smith   } else {
213ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
21480444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
215ae7cfcebSSatish Balay #else
21671044d3cSBarry Smith     LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
2174ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve");
218ae7cfcebSSatish Balay #endif
219da3a660dSBarry Smith   }
2201ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2211ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
222dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
2233a40ed3dSBarry Smith   PetscFunctionReturn(0);
224da3a660dSBarry Smith }
2256ee01492SSatish Balay 
2264a2ae208SSatish Balay #undef __FUNCT__
2274a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense"
228dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
229da3a660dSBarry Smith {
230c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
231dfbe8321SBarry Smith   PetscErrorCode ierr;
23287828ca2SBarry Smith   PetscScalar    *x,*y,sone = 1.0;
233da3a660dSBarry Smith   Vec            tmp = 0;
234d0f46423SBarry Smith   PetscBLASInt   one = 1,info,m = PetscBLASIntCast(A->rmap->n);
23567e560aaSBarry Smith 
2363a40ed3dSBarry Smith   PetscFunctionBegin;
2371ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2381ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
239d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
240da3a660dSBarry Smith   if (yy == zz) {
24178b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
24252e6d16bSBarry Smith     ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr);
24378b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
244da3a660dSBarry Smith   }
245d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
246752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
247da3a660dSBarry Smith   if (mat->pivots) {
248ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
24980444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
250ae7cfcebSSatish Balay #else
25171044d3cSBarry Smith     LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
2522ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
253ae7cfcebSSatish Balay #endif
254a8c6a408SBarry Smith   } else {
255ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
25680444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
257ae7cfcebSSatish Balay #else
25871044d3cSBarry Smith     LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
2592ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
260ae7cfcebSSatish Balay #endif
261da3a660dSBarry Smith   }
2622dcb1b2aSMatthew Knepley   if (tmp) {ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);}
2632dcb1b2aSMatthew Knepley   else     {ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);}
2641ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2651ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
266dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr);
2673a40ed3dSBarry Smith   PetscFunctionReturn(0);
268da3a660dSBarry Smith }
26967e560aaSBarry Smith 
2704a2ae208SSatish Balay #undef __FUNCT__
2714a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense"
272dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
273da3a660dSBarry Smith {
274c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
2756849ba73SBarry Smith   PetscErrorCode ierr;
27687828ca2SBarry Smith   PetscScalar    *x,*y,sone = 1.0;
277da3a660dSBarry Smith   Vec            tmp;
278d0f46423SBarry Smith   PetscBLASInt   one = 1,info,m = PetscBLASIntCast(A->rmap->n);
27967e560aaSBarry Smith 
2803a40ed3dSBarry Smith   PetscFunctionBegin;
281d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
2821ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2831ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
284da3a660dSBarry Smith   if (yy == zz) {
28578b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
28652e6d16bSBarry Smith     ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr);
28778b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
288da3a660dSBarry Smith   }
289d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
290752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
291da3a660dSBarry Smith   if (mat->pivots) {
292ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
29380444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
294ae7cfcebSSatish Balay #else
29571044d3cSBarry Smith     LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
2962ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
297ae7cfcebSSatish Balay #endif
2983a40ed3dSBarry Smith   } else {
299ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
30080444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
301ae7cfcebSSatish Balay #else
30271044d3cSBarry Smith     LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
3032ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
304ae7cfcebSSatish Balay #endif
305da3a660dSBarry Smith   }
30690f02eecSBarry Smith   if (tmp) {
3072dcb1b2aSMatthew Knepley     ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr);
30890f02eecSBarry Smith     ierr = VecDestroy(tmp);CHKERRQ(ierr);
3093a40ed3dSBarry Smith   } else {
3102dcb1b2aSMatthew Knepley     ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);
31190f02eecSBarry Smith   }
3121ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3131ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
314dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr);
3153a40ed3dSBarry Smith   PetscFunctionReturn(0);
316da3a660dSBarry Smith }
317db4efbfdSBarry Smith 
318db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
319db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
320db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
321db4efbfdSBarry Smith #undef __FUNCT__
322db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactor_SeqDense"
3230481f469SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
324db4efbfdSBarry Smith {
325db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF)
326db4efbfdSBarry Smith   PetscFunctionBegin;
327db4efbfdSBarry Smith   SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable.");
328db4efbfdSBarry Smith #else
329db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
330db4efbfdSBarry Smith   PetscErrorCode ierr;
331db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
332db4efbfdSBarry Smith 
333db4efbfdSBarry Smith   PetscFunctionBegin;
334db4efbfdSBarry Smith   n = PetscBLASIntCast(A->cmap->n);
335db4efbfdSBarry Smith   m = PetscBLASIntCast(A->rmap->n);
336db4efbfdSBarry Smith   if (!mat->pivots) {
337db4efbfdSBarry Smith     ierr = PetscMalloc((A->rmap->n+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr);
338db4efbfdSBarry Smith     ierr = PetscLogObjectMemory(A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
339db4efbfdSBarry Smith   }
340db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
341db4efbfdSBarry Smith   LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info);
342db4efbfdSBarry Smith   if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization");
343db4efbfdSBarry Smith   if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
344db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
345db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
346db4efbfdSBarry Smith   A->ops->solveadd          = MatSolveAdd_SeqDense;
347db4efbfdSBarry Smith   A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense;
348db4efbfdSBarry Smith   A->factor = MAT_FACTOR_LU;
349db4efbfdSBarry Smith 
350dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
351db4efbfdSBarry Smith #endif
352db4efbfdSBarry Smith   PetscFunctionReturn(0);
353db4efbfdSBarry Smith }
354db4efbfdSBarry Smith 
355db4efbfdSBarry Smith #undef __FUNCT__
356db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactor_SeqDense"
3570481f469SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
358db4efbfdSBarry Smith {
359db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF)
360db4efbfdSBarry Smith   PetscFunctionBegin;
361db4efbfdSBarry Smith   SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable.");
362db4efbfdSBarry Smith #else
363db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
364db4efbfdSBarry Smith   PetscErrorCode ierr;
365db4efbfdSBarry Smith   PetscBLASInt   info,n = PetscBLASIntCast(A->cmap->n);
366db4efbfdSBarry Smith 
367db4efbfdSBarry Smith   PetscFunctionBegin;
368db4efbfdSBarry Smith   ierr = PetscFree(mat->pivots);CHKERRQ(ierr);
369db4efbfdSBarry Smith   mat->pivots = 0;
370db4efbfdSBarry Smith 
371db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
372db4efbfdSBarry Smith   LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info);
373db4efbfdSBarry Smith   if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
374db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
375db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
376db4efbfdSBarry Smith   A->ops->solveadd          = MatSolveAdd_SeqDense;
377db4efbfdSBarry Smith   A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense;
378db4efbfdSBarry Smith   A->factor = MAT_FACTOR_CHOLESKY;
379dc0b31edSSatish Balay   ierr = PetscLogFlops((A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
380db4efbfdSBarry Smith #endif
381db4efbfdSBarry Smith   PetscFunctionReturn(0);
382db4efbfdSBarry Smith }
383db4efbfdSBarry Smith 
384db4efbfdSBarry Smith 
385db4efbfdSBarry Smith #undef __FUNCT__
386db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense"
3870481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
388db4efbfdSBarry Smith {
389db4efbfdSBarry Smith   PetscErrorCode ierr;
390db4efbfdSBarry Smith   MatFactorInfo  info;
391db4efbfdSBarry Smith 
392db4efbfdSBarry Smith   PetscFunctionBegin;
393db4efbfdSBarry Smith   info.fill = 1.0;
394c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
395719d5645SBarry Smith   ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr);
396db4efbfdSBarry Smith   PetscFunctionReturn(0);
397db4efbfdSBarry Smith }
398db4efbfdSBarry Smith 
399db4efbfdSBarry Smith #undef __FUNCT__
400db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense"
4010481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
402db4efbfdSBarry Smith {
403db4efbfdSBarry Smith   PetscFunctionBegin;
404c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
405719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
406db4efbfdSBarry Smith   PetscFunctionReturn(0);
407db4efbfdSBarry Smith }
408db4efbfdSBarry Smith 
409db4efbfdSBarry Smith #undef __FUNCT__
410db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_SeqDense"
4110481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
412db4efbfdSBarry Smith {
413db4efbfdSBarry Smith   PetscFunctionBegin;
414c3ef05f6SHong Zhang   fact->assembled            = PETSC_TRUE;
415719d5645SBarry Smith   fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense;
416db4efbfdSBarry Smith   PetscFunctionReturn(0);
417db4efbfdSBarry Smith }
418db4efbfdSBarry Smith 
419bb5747d9SMatthew Knepley EXTERN_C_BEGIN
420db4efbfdSBarry Smith #undef __FUNCT__
421db4efbfdSBarry Smith #define __FUNCT__ "MatGetFactor_seqdense_petsc"
422db4efbfdSBarry Smith PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
423db4efbfdSBarry Smith {
424db4efbfdSBarry Smith   PetscErrorCode ierr;
425db4efbfdSBarry Smith 
426db4efbfdSBarry Smith   PetscFunctionBegin;
427db4efbfdSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,fact);CHKERRQ(ierr);
428db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
429db4efbfdSBarry Smith   ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr);
430db4efbfdSBarry Smith   if (ftype == MAT_FACTOR_LU){
431db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
432db4efbfdSBarry Smith   } else {
433db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
434db4efbfdSBarry Smith   }
435db4efbfdSBarry Smith   (*fact)->factor = ftype;
436db4efbfdSBarry Smith   PetscFunctionReturn(0);
437db4efbfdSBarry Smith }
438bb5747d9SMatthew Knepley EXTERN_C_END
439db4efbfdSBarry Smith 
440289bc588SBarry Smith /* ------------------------------------------------------------------*/
4414a2ae208SSatish Balay #undef __FUNCT__
4424a2ae208SSatish Balay #define __FUNCT__ "MatRelax_SeqDense"
44313f74950SBarry Smith PetscErrorCode MatRelax_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
444289bc588SBarry Smith {
445c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
44687828ca2SBarry Smith   PetscScalar    *x,*b,*v = mat->v,zero = 0.0,xt;
447dfbe8321SBarry Smith   PetscErrorCode ierr;
448d0f46423SBarry Smith   PetscInt       m = A->rmap->n,i;
449aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX)
4500805154bSBarry Smith   PetscBLASInt   o = 1,bm = PetscBLASIntCast(m);
451bc1b551cSSatish Balay #endif
452289bc588SBarry Smith 
4533a40ed3dSBarry Smith   PetscFunctionBegin;
454289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
45571044d3cSBarry Smith     /* this is a hack fix, should have another version without the second BLASdot */
4562dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
457289bc588SBarry Smith   }
4581ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4591ebc52fbSHong Zhang   ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
460b965ef7fSBarry Smith   its  = its*lits;
46177431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
462289bc588SBarry Smith   while (its--) {
463fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
464289bc588SBarry Smith       for (i=0; i<m; i++) {
465aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
466f1747703SBarry Smith         /* cannot use BLAS dot for complex because compiler/linker is
467f1747703SBarry Smith            not happy about returning a double complex */
46813f74950SBarry Smith         PetscInt    _i;
46987828ca2SBarry Smith         PetscScalar sum = b[i];
470f1747703SBarry Smith         for (_i=0; _i<m; _i++) {
4713f6de6efSSatish Balay           sum -= PetscConj(v[i+_i*m])*x[_i];
472f1747703SBarry Smith         }
473f1747703SBarry Smith         xt = sum;
474f1747703SBarry Smith #else
47571044d3cSBarry Smith         xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o);
476f1747703SBarry Smith #endif
47755a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
478289bc588SBarry Smith       }
479289bc588SBarry Smith     }
480fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
481289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
482aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
483f1747703SBarry Smith         /* cannot use BLAS dot for complex because compiler/linker is
484f1747703SBarry Smith            not happy about returning a double complex */
48513f74950SBarry Smith         PetscInt    _i;
48687828ca2SBarry Smith         PetscScalar sum = b[i];
487f1747703SBarry Smith         for (_i=0; _i<m; _i++) {
4883f6de6efSSatish Balay           sum -= PetscConj(v[i+_i*m])*x[_i];
489f1747703SBarry Smith         }
490f1747703SBarry Smith         xt = sum;
491f1747703SBarry Smith #else
49271044d3cSBarry Smith         xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o);
493f1747703SBarry Smith #endif
49455a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
495289bc588SBarry Smith       }
496289bc588SBarry Smith     }
497289bc588SBarry Smith   }
4981ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
4991ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5003a40ed3dSBarry Smith   PetscFunctionReturn(0);
501289bc588SBarry Smith }
502289bc588SBarry Smith 
503289bc588SBarry Smith /* -----------------------------------------------------------------*/
5044a2ae208SSatish Balay #undef __FUNCT__
5054a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense"
506dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
507289bc588SBarry Smith {
508c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
50987828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y;
510dfbe8321SBarry Smith   PetscErrorCode ierr;
5110805154bSBarry Smith   PetscBLASInt   m, n,_One=1;
512ea709b57SSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
5133a40ed3dSBarry Smith 
5143a40ed3dSBarry Smith   PetscFunctionBegin;
515d0f46423SBarry Smith   m = PetscBLASIntCast(A->rmap->n);
516d0f46423SBarry Smith   n = PetscBLASIntCast(A->cmap->n);
517d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
5181ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5191ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
52071044d3cSBarry Smith   BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One);
5211ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5221ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
523dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
5243a40ed3dSBarry Smith   PetscFunctionReturn(0);
525289bc588SBarry Smith }
5266ee01492SSatish Balay 
5274a2ae208SSatish Balay #undef __FUNCT__
5284a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense"
529dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
530289bc588SBarry Smith {
531c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
53287828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0;
533dfbe8321SBarry Smith   PetscErrorCode ierr;
5340805154bSBarry Smith   PetscBLASInt   m, n, _One=1;
5353a40ed3dSBarry Smith 
5363a40ed3dSBarry Smith   PetscFunctionBegin;
537d0f46423SBarry Smith   m = PetscBLASIntCast(A->rmap->n);
538d0f46423SBarry Smith   n = PetscBLASIntCast(A->cmap->n);
539d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
5401ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5411ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
54271044d3cSBarry Smith   BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One);
5431ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5441ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
545dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
5463a40ed3dSBarry Smith   PetscFunctionReturn(0);
547289bc588SBarry Smith }
5486ee01492SSatish Balay 
5494a2ae208SSatish Balay #undef __FUNCT__
5504a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense"
551dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
552289bc588SBarry Smith {
553c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
55487828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y,_DOne=1.0;
555dfbe8321SBarry Smith   PetscErrorCode ierr;
5560805154bSBarry Smith   PetscBLASInt   m, n, _One=1;
5573a40ed3dSBarry Smith 
5583a40ed3dSBarry Smith   PetscFunctionBegin;
559d0f46423SBarry Smith   m = PetscBLASIntCast(A->rmap->n);
560d0f46423SBarry Smith   n = PetscBLASIntCast(A->cmap->n);
561d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
562600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
5631ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5641ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
56571044d3cSBarry Smith   BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One);
5661ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5671ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
568dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
5693a40ed3dSBarry Smith   PetscFunctionReturn(0);
570289bc588SBarry Smith }
5716ee01492SSatish Balay 
5724a2ae208SSatish Balay #undef __FUNCT__
5734a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense"
574dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
575289bc588SBarry Smith {
576c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
57787828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y;
578dfbe8321SBarry Smith   PetscErrorCode ierr;
5790805154bSBarry Smith   PetscBLASInt   m, n, _One=1;
58087828ca2SBarry Smith   PetscScalar    _DOne=1.0;
5813a40ed3dSBarry Smith 
5823a40ed3dSBarry Smith   PetscFunctionBegin;
583d0f46423SBarry Smith   m = PetscBLASIntCast(A->rmap->n);
584d0f46423SBarry Smith   n = PetscBLASIntCast(A->cmap->n);
585d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
586600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
5871ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5881ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
58971044d3cSBarry Smith   BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One);
5901ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5911ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
592dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
5933a40ed3dSBarry Smith   PetscFunctionReturn(0);
594289bc588SBarry Smith }
595289bc588SBarry Smith 
596289bc588SBarry Smith /* -----------------------------------------------------------------*/
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense"
59913f74950SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
600289bc588SBarry Smith {
601c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
60287828ca2SBarry Smith   PetscScalar    *v;
6036849ba73SBarry Smith   PetscErrorCode ierr;
60413f74950SBarry Smith   PetscInt       i;
60567e560aaSBarry Smith 
6063a40ed3dSBarry Smith   PetscFunctionBegin;
607d0f46423SBarry Smith   *ncols = A->cmap->n;
608289bc588SBarry Smith   if (cols) {
609d0f46423SBarry Smith     ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscInt),cols);CHKERRQ(ierr);
610d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
611289bc588SBarry Smith   }
612289bc588SBarry Smith   if (vals) {
613d0f46423SBarry Smith     ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr);
614289bc588SBarry Smith     v    = mat->v + row;
615d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
616289bc588SBarry Smith   }
6173a40ed3dSBarry Smith   PetscFunctionReturn(0);
618289bc588SBarry Smith }
6196ee01492SSatish Balay 
6204a2ae208SSatish Balay #undef __FUNCT__
6214a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense"
62213f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
623289bc588SBarry Smith {
624dfbe8321SBarry Smith   PetscErrorCode ierr;
625606d414cSSatish Balay   PetscFunctionBegin;
626606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
627606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
6283a40ed3dSBarry Smith   PetscFunctionReturn(0);
629289bc588SBarry Smith }
630289bc588SBarry Smith /* ----------------------------------------------------------------*/
6314a2ae208SSatish Balay #undef __FUNCT__
6324a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense"
63313f74950SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
634289bc588SBarry Smith {
635c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
63613f74950SBarry Smith   PetscInt     i,j,idx=0;
637d6dfbf8fSBarry Smith 
6383a40ed3dSBarry Smith   PetscFunctionBegin;
639289bc588SBarry Smith   if (!mat->roworiented) {
640dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
641289bc588SBarry Smith       for (j=0; j<n; j++) {
642cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
6432515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
644d0f46423SBarry Smith         if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
64558804f6dSBarry Smith #endif
646289bc588SBarry Smith         for (i=0; i<m; i++) {
647cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
6482515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
649d0f46423SBarry Smith           if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
65058804f6dSBarry Smith #endif
651cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
652289bc588SBarry Smith         }
653289bc588SBarry Smith       }
6543a40ed3dSBarry Smith     } else {
655289bc588SBarry Smith       for (j=0; j<n; j++) {
656cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
6572515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
658d0f46423SBarry Smith         if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
65958804f6dSBarry Smith #endif
660289bc588SBarry Smith         for (i=0; i<m; i++) {
661cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
6622515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
663d0f46423SBarry Smith           if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
66458804f6dSBarry Smith #endif
665cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
666289bc588SBarry Smith         }
667289bc588SBarry Smith       }
668289bc588SBarry Smith     }
6693a40ed3dSBarry Smith   } else {
670dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
671e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
672cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
6732515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
674d0f46423SBarry Smith         if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
67558804f6dSBarry Smith #endif
676e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
677cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
6782515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
679d0f46423SBarry Smith           if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
68058804f6dSBarry Smith #endif
681cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
682e8d4e0b9SBarry Smith         }
683e8d4e0b9SBarry Smith       }
6843a40ed3dSBarry Smith     } else {
685289bc588SBarry Smith       for (i=0; i<m; i++) {
686cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
6872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
688d0f46423SBarry Smith         if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
68958804f6dSBarry Smith #endif
690289bc588SBarry Smith         for (j=0; j<n; j++) {
691cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
6922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
693d0f46423SBarry Smith           if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
69458804f6dSBarry Smith #endif
695cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
696289bc588SBarry Smith         }
697289bc588SBarry Smith       }
698289bc588SBarry Smith     }
699e8d4e0b9SBarry Smith   }
7003a40ed3dSBarry Smith   PetscFunctionReturn(0);
701289bc588SBarry Smith }
702e8d4e0b9SBarry Smith 
7034a2ae208SSatish Balay #undef __FUNCT__
7044a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense"
70513f74950SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
706ae80bb75SLois Curfman McInnes {
707ae80bb75SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
70813f74950SBarry Smith   PetscInt     i,j;
709ae80bb75SLois Curfman McInnes 
7103a40ed3dSBarry Smith   PetscFunctionBegin;
711ae80bb75SLois Curfman McInnes   /* row-oriented output */
712ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
71397e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
714d0f46423SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
715ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
7166f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
717d0f46423SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
71897e567efSBarry Smith       *v++ = mat->v[indexn[j]*mat->lda + indexm[i]];
719ae80bb75SLois Curfman McInnes     }
720ae80bb75SLois Curfman McInnes   }
7213a40ed3dSBarry Smith   PetscFunctionReturn(0);
722ae80bb75SLois Curfman McInnes }
723ae80bb75SLois Curfman McInnes 
724289bc588SBarry Smith /* -----------------------------------------------------------------*/
725289bc588SBarry Smith 
726e090d566SSatish Balay #include "petscsys.h"
72788e32edaSLois Curfman McInnes 
7284a2ae208SSatish Balay #undef __FUNCT__
7294a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense"
730a313700dSBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer, const MatType type,Mat *A)
73188e32edaSLois Curfman McInnes {
73288e32edaSLois Curfman McInnes   Mat_SeqDense   *a;
73388e32edaSLois Curfman McInnes   Mat            B;
7346849ba73SBarry Smith   PetscErrorCode ierr;
73513f74950SBarry Smith   PetscInt       *scols,i,j,nz,header[4];
73613f74950SBarry Smith   int            fd;
73713f74950SBarry Smith   PetscMPIInt    size;
73813f74950SBarry Smith   PetscInt       *rowlengths = 0,M,N,*cols;
73987828ca2SBarry Smith   PetscScalar    *vals,*svals,*v,*w;
74019bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
74188e32edaSLois Curfman McInnes 
7423a40ed3dSBarry Smith   PetscFunctionBegin;
743d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
74429bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
745b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
7460752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
747552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object");
74888e32edaSLois Curfman McInnes   M = header[1]; N = header[2]; nz = header[3];
74988e32edaSLois Curfman McInnes 
75090ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */
751f69a0ea3SMatthew Knepley     ierr = MatCreate(comm,A);CHKERRQ(ierr);
752f69a0ea3SMatthew Knepley     ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr);
753be5d1d56SKris Buschelman     ierr = MatSetType(*A,type);CHKERRQ(ierr);
7545c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr);
75590ace30eSBarry Smith     B    = *A;
75690ace30eSBarry Smith     a    = (Mat_SeqDense*)B->data;
7574a41a4d3SSatish Balay     v    = a->v;
7584a41a4d3SSatish Balay     /* Allocate some temp space to read in the values and then flip them
7594a41a4d3SSatish Balay        from row major to column major */
760b72907f3SBarry Smith     ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr);
76190ace30eSBarry Smith     /* read in nonzero values */
7624a41a4d3SSatish Balay     ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr);
7634a41a4d3SSatish Balay     /* now flip the values and store them in the matrix*/
7644a41a4d3SSatish Balay     for (j=0; j<N; j++) {
7654a41a4d3SSatish Balay       for (i=0; i<M; i++) {
7664a41a4d3SSatish Balay         *v++ =w[i*N+j];
7674a41a4d3SSatish Balay       }
7684a41a4d3SSatish Balay     }
769606d414cSSatish Balay     ierr = PetscFree(w);CHKERRQ(ierr);
7706d4a8577SBarry Smith     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7716d4a8577SBarry Smith     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
77290ace30eSBarry Smith   } else {
77388e32edaSLois Curfman McInnes     /* read row lengths */
77413f74950SBarry Smith     ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
7750752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
77688e32edaSLois Curfman McInnes 
77788e32edaSLois Curfman McInnes     /* create our matrix */
778f69a0ea3SMatthew Knepley     ierr = MatCreate(comm,A);CHKERRQ(ierr);
779f69a0ea3SMatthew Knepley     ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr);
780be5d1d56SKris Buschelman     ierr = MatSetType(*A,type);CHKERRQ(ierr);
7815c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr);
78288e32edaSLois Curfman McInnes     B = *A;
78388e32edaSLois Curfman McInnes     a = (Mat_SeqDense*)B->data;
78488e32edaSLois Curfman McInnes     v = a->v;
78588e32edaSLois Curfman McInnes 
78688e32edaSLois Curfman McInnes     /* read column indices and nonzeros */
78713f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&scols);CHKERRQ(ierr);
788b0a32e0cSBarry Smith     cols = scols;
7890752156aSBarry Smith     ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
79087828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr);
791b0a32e0cSBarry Smith     vals = svals;
7920752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
79388e32edaSLois Curfman McInnes 
79488e32edaSLois Curfman McInnes     /* insert into matrix */
79588e32edaSLois Curfman McInnes     for (i=0; i<M; i++) {
79688e32edaSLois Curfman McInnes       for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j];
79788e32edaSLois Curfman McInnes       svals += rowlengths[i]; scols += rowlengths[i];
79888e32edaSLois Curfman McInnes     }
799606d414cSSatish Balay     ierr = PetscFree(vals);CHKERRQ(ierr);
800606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
801606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
80288e32edaSLois Curfman McInnes 
8036d4a8577SBarry Smith     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8046d4a8577SBarry Smith     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
80590ace30eSBarry Smith   }
8063a40ed3dSBarry Smith   PetscFunctionReturn(0);
80788e32edaSLois Curfman McInnes }
80888e32edaSLois Curfman McInnes 
809e090d566SSatish Balay #include "petscsys.h"
810932b0c3eSLois Curfman McInnes 
8114a2ae208SSatish Balay #undef __FUNCT__
8124a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII"
8136849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
814289bc588SBarry Smith {
815932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
816dfbe8321SBarry Smith   PetscErrorCode    ierr;
81713f74950SBarry Smith   PetscInt          i,j;
8182dcb1b2aSMatthew Knepley   const char        *name;
81987828ca2SBarry Smith   PetscScalar       *v;
820f3ef73ceSBarry Smith   PetscViewerFormat format;
8215f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
8225f481a85SSatish Balay   PetscTruth        allreal = PETSC_TRUE;
8235f481a85SSatish Balay #endif
824932b0c3eSLois Curfman McInnes 
8253a40ed3dSBarry Smith   PetscFunctionBegin;
826435da068SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
827b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
828456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
8293a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
830fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
831b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
832d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
83344cd7ae7SLois Curfman McInnes       v = a->v + i;
83477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
835d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
836aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
837329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
838a83599f4SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr);
839329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
840a83599f4SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,PetscRealPart(*v));CHKERRQ(ierr);
8416831982aSBarry Smith         }
84280cd9d93SLois Curfman McInnes #else
8436831982aSBarry Smith         if (*v) {
844a83599f4SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,*v);CHKERRQ(ierr);
8456831982aSBarry Smith         }
84680cd9d93SLois Curfman McInnes #endif
8471b807ce4Svictorle         v += a->lda;
84880cd9d93SLois Curfman McInnes       }
849b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
85080cd9d93SLois Curfman McInnes     }
851b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
8523a40ed3dSBarry Smith   } else {
853b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
854aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
85547989497SBarry Smith     /* determine if matrix has all real values */
85647989497SBarry Smith     v = a->v;
857d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
858ffac6cdbSBarry Smith 	if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;}
85947989497SBarry Smith     }
86047989497SBarry Smith #endif
861fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
8623a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
863d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
864d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
865fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
866ffac6cdbSBarry Smith     }
867ffac6cdbSBarry Smith 
868d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
869932b0c3eSLois Curfman McInnes       v = a->v + i;
870d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
871aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
87247989497SBarry Smith         if (allreal) {
873f32d5d43SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr);
87447989497SBarry Smith         } else {
875f32d5d43SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr);
87647989497SBarry Smith         }
877289bc588SBarry Smith #else
878f32d5d43SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr);
879289bc588SBarry Smith #endif
8801b807ce4Svictorle 	v += a->lda;
881289bc588SBarry Smith       }
882b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
883289bc588SBarry Smith     }
884fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
885b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
886ffac6cdbSBarry Smith     }
887b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
888da3a660dSBarry Smith   }
889b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8903a40ed3dSBarry Smith   PetscFunctionReturn(0);
891289bc588SBarry Smith }
892289bc588SBarry Smith 
8934a2ae208SSatish Balay #undef __FUNCT__
8944a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary"
8956849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer)
896932b0c3eSLois Curfman McInnes {
897932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
8986849ba73SBarry Smith   PetscErrorCode    ierr;
89913f74950SBarry Smith   int               fd;
900d0f46423SBarry Smith   PetscInt          ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n;
90187828ca2SBarry Smith   PetscScalar       *v,*anonz,*vals;
902f3ef73ceSBarry Smith   PetscViewerFormat format;
903932b0c3eSLois Curfman McInnes 
9043a40ed3dSBarry Smith   PetscFunctionBegin;
905b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
90690ace30eSBarry Smith 
907b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
9087973ad04SBarry Smith   if (format == PETSC_VIEWER_NATIVE) {
90990ace30eSBarry Smith     /* store the matrix as a dense matrix */
91013f74950SBarry Smith     ierr = PetscMalloc(4*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
911552e946dSBarry Smith     col_lens[0] = MAT_FILE_COOKIE;
91290ace30eSBarry Smith     col_lens[1] = m;
91390ace30eSBarry Smith     col_lens[2] = n;
91490ace30eSBarry Smith     col_lens[3] = MATRIX_BINARY_FORMAT_DENSE;
9156f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
916606d414cSSatish Balay     ierr = PetscFree(col_lens);CHKERRQ(ierr);
91790ace30eSBarry Smith 
91890ace30eSBarry Smith     /* write out matrix, by rows */
91987828ca2SBarry Smith     ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
92090ace30eSBarry Smith     v    = a->v;
92190ace30eSBarry Smith     for (j=0; j<n; j++) {
922578230a0SSatish Balay       for (i=0; i<m; i++) {
923578230a0SSatish Balay         vals[j + i*n] = *v++;
92490ace30eSBarry Smith       }
92590ace30eSBarry Smith     }
9266f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
927606d414cSSatish Balay     ierr = PetscFree(vals);CHKERRQ(ierr);
92890ace30eSBarry Smith   } else {
92913f74950SBarry Smith     ierr = PetscMalloc((4+nz)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
930552e946dSBarry Smith     col_lens[0] = MAT_FILE_COOKIE;
931932b0c3eSLois Curfman McInnes     col_lens[1] = m;
932932b0c3eSLois Curfman McInnes     col_lens[2] = n;
933932b0c3eSLois Curfman McInnes     col_lens[3] = nz;
934932b0c3eSLois Curfman McInnes 
935932b0c3eSLois Curfman McInnes     /* store lengths of each row and write (including header) to file */
936932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) col_lens[4+i] = n;
9376f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
938932b0c3eSLois Curfman McInnes 
939932b0c3eSLois Curfman McInnes     /* Possibly should write in smaller increments, not whole matrix at once? */
940932b0c3eSLois Curfman McInnes     /* store column indices (zero start index) */
941932b0c3eSLois Curfman McInnes     ict = 0;
942932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
943932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) col_lens[ict++] = j;
944932b0c3eSLois Curfman McInnes     }
9456f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
946606d414cSSatish Balay     ierr = PetscFree(col_lens);CHKERRQ(ierr);
947932b0c3eSLois Curfman McInnes 
948932b0c3eSLois Curfman McInnes     /* store nonzero values */
94987828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr);
950932b0c3eSLois Curfman McInnes     ict  = 0;
951932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
952932b0c3eSLois Curfman McInnes       v = a->v + i;
953932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) {
9541b807ce4Svictorle         anonz[ict++] = *v; v += a->lda;
955932b0c3eSLois Curfman McInnes       }
956932b0c3eSLois Curfman McInnes     }
9576f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
958606d414cSSatish Balay     ierr = PetscFree(anonz);CHKERRQ(ierr);
95990ace30eSBarry Smith   }
9603a40ed3dSBarry Smith   PetscFunctionReturn(0);
961932b0c3eSLois Curfman McInnes }
962932b0c3eSLois Curfman McInnes 
9634a2ae208SSatish Balay #undef __FUNCT__
9644a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom"
965dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
966f1af5d2fSBarry Smith {
967f1af5d2fSBarry Smith   Mat               A = (Mat) Aa;
968f1af5d2fSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
9696849ba73SBarry Smith   PetscErrorCode    ierr;
970d0f46423SBarry Smith   PetscInt          m = A->rmap->n,n = A->cmap->n,color,i,j;
97187828ca2SBarry Smith   PetscScalar       *v = a->v;
972b0a32e0cSBarry Smith   PetscViewer       viewer;
973b0a32e0cSBarry Smith   PetscDraw         popup;
974329f5518SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0;
975f3ef73ceSBarry Smith   PetscViewerFormat format;
976f1af5d2fSBarry Smith 
977f1af5d2fSBarry Smith   PetscFunctionBegin;
978f1af5d2fSBarry Smith 
979f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
980b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
981b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
982f1af5d2fSBarry Smith 
983f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
984fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
985f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
986b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
987f1af5d2fSBarry Smith     for(j = 0; j < n; j++) {
988f1af5d2fSBarry Smith       x_l = j;
989f1af5d2fSBarry Smith       x_r = x_l + 1.0;
990f1af5d2fSBarry Smith       for(i = 0; i < m; i++) {
991f1af5d2fSBarry Smith         y_l = m - i - 1.0;
992f1af5d2fSBarry Smith         y_r = y_l + 1.0;
993f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX)
994329f5518SBarry Smith         if (PetscRealPart(v[j*m+i]) >  0.) {
995b0a32e0cSBarry Smith           color = PETSC_DRAW_RED;
996329f5518SBarry Smith         } else if (PetscRealPart(v[j*m+i]) <  0.) {
997b0a32e0cSBarry Smith           color = PETSC_DRAW_BLUE;
998f1af5d2fSBarry Smith         } else {
999f1af5d2fSBarry Smith           continue;
1000f1af5d2fSBarry Smith         }
1001f1af5d2fSBarry Smith #else
1002f1af5d2fSBarry Smith         if (v[j*m+i] >  0.) {
1003b0a32e0cSBarry Smith           color = PETSC_DRAW_RED;
1004f1af5d2fSBarry Smith         } else if (v[j*m+i] <  0.) {
1005b0a32e0cSBarry Smith           color = PETSC_DRAW_BLUE;
1006f1af5d2fSBarry Smith         } else {
1007f1af5d2fSBarry Smith           continue;
1008f1af5d2fSBarry Smith         }
1009f1af5d2fSBarry Smith #endif
1010b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1011f1af5d2fSBarry Smith       }
1012f1af5d2fSBarry Smith     }
1013f1af5d2fSBarry Smith   } else {
1014f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1015f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1016f1af5d2fSBarry Smith     for(i = 0; i < m*n; i++) {
1017f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1018f1af5d2fSBarry Smith     }
1019b0a32e0cSBarry Smith     scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv;
1020b0a32e0cSBarry Smith     ierr  = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1021b0a32e0cSBarry Smith     if (popup) {ierr  = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);}
1022f1af5d2fSBarry Smith     for(j = 0; j < n; j++) {
1023f1af5d2fSBarry Smith       x_l = j;
1024f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1025f1af5d2fSBarry Smith       for(i = 0; i < m; i++) {
1026f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1027f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1028b0a32e0cSBarry Smith         color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i]));
1029b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1030f1af5d2fSBarry Smith       }
1031f1af5d2fSBarry Smith     }
1032f1af5d2fSBarry Smith   }
1033f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1034f1af5d2fSBarry Smith }
1035f1af5d2fSBarry Smith 
10364a2ae208SSatish Balay #undef __FUNCT__
10374a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw"
1038dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1039f1af5d2fSBarry Smith {
1040b0a32e0cSBarry Smith   PetscDraw      draw;
1041f1af5d2fSBarry Smith   PetscTruth     isnull;
1042329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1043dfbe8321SBarry Smith   PetscErrorCode ierr;
1044f1af5d2fSBarry Smith 
1045f1af5d2fSBarry Smith   PetscFunctionBegin;
1046b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1047b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1048abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1049f1af5d2fSBarry Smith 
1050f1af5d2fSBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1051d0f46423SBarry Smith   xr  = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1052f1af5d2fSBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1053b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1054b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
1055f1af5d2fSBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
1056f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1057f1af5d2fSBarry Smith }
1058f1af5d2fSBarry Smith 
10594a2ae208SSatish Balay #undef __FUNCT__
10604a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense"
1061dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1062932b0c3eSLois Curfman McInnes {
1063dfbe8321SBarry Smith   PetscErrorCode ierr;
10646805f65bSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
1065932b0c3eSLois Curfman McInnes 
10663a40ed3dSBarry Smith   PetscFunctionBegin;
106732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1068fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1069fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
10700f5bd95cSBarry Smith 
1071c45a1595SBarry Smith   if (iascii) {
1072c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
10730f5bd95cSBarry Smith   } else if (isbinary) {
10743a40ed3dSBarry Smith     ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr);
1075f1af5d2fSBarry Smith   } else if (isdraw) {
1076f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
10775cd90555SBarry Smith   } else {
1078958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name);
1079932b0c3eSLois Curfman McInnes   }
10803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1081932b0c3eSLois Curfman McInnes }
1082289bc588SBarry Smith 
10834a2ae208SSatish Balay #undef __FUNCT__
10844a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense"
1085dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat)
1086289bc588SBarry Smith {
1087ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1088dfbe8321SBarry Smith   PetscErrorCode ierr;
108990f02eecSBarry Smith 
10903a40ed3dSBarry Smith   PetscFunctionBegin;
1091aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1092d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1093a5a9c739SBarry Smith #endif
109405b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
10956857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1096606d414cSSatish Balay   ierr = PetscFree(l);CHKERRQ(ierr);
1097dbd8c25aSHong Zhang 
1098dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1099901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
11004ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr);
11014ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr);
11024ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr);
11033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1104289bc588SBarry Smith }
1105289bc588SBarry Smith 
11064a2ae208SSatish Balay #undef __FUNCT__
11074a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense"
1108fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1109289bc588SBarry Smith {
1110c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
11116849ba73SBarry Smith   PetscErrorCode ierr;
111213f74950SBarry Smith   PetscInt       k,j,m,n,M;
111387828ca2SBarry Smith   PetscScalar    *v,tmp;
111448b35521SBarry Smith 
11153a40ed3dSBarry Smith   PetscFunctionBegin;
1116d0f46423SBarry Smith   v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n;
1117e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && *matout == A) { /* in place transpose */
1118a5ce6ee0Svictorle     if (m != n) {
1119634064b4SBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place");
1120d64ed03dSBarry Smith     } else {
1121d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1122289bc588SBarry Smith         for (k=0; k<j; k++) {
11231b807ce4Svictorle           tmp = v[j + k*M];
11241b807ce4Svictorle           v[j + k*M] = v[k + j*M];
11251b807ce4Svictorle           v[k + j*M] = tmp;
1126289bc588SBarry Smith         }
1127289bc588SBarry Smith       }
1128d64ed03dSBarry Smith     }
11293a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1130d3e5ee88SLois Curfman McInnes     Mat          tmat;
1131ec8511deSBarry Smith     Mat_SeqDense *tmatd;
113287828ca2SBarry Smith     PetscScalar  *v2;
1133ea709b57SSatish Balay 
1134fc4dec0aSBarry Smith     if (reuse == MAT_INITIAL_MATRIX) {
11357adad957SLisandro Dalcin       ierr  = MatCreate(((PetscObject)A)->comm,&tmat);CHKERRQ(ierr);
1136d0f46423SBarry Smith       ierr  = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
11377adad957SLisandro Dalcin       ierr  = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
11385c5985e7SKris Buschelman       ierr  = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr);
1139fc4dec0aSBarry Smith     } else {
1140fc4dec0aSBarry Smith       tmat = *matout;
1141fc4dec0aSBarry Smith     }
1142ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
11430de55854SLois Curfman McInnes     v = mat->v; v2 = tmatd->v;
1144d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
11451b807ce4Svictorle       for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M];
1146d3e5ee88SLois Curfman McInnes     }
11476d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11486d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1149d3e5ee88SLois Curfman McInnes     *matout = tmat;
115048b35521SBarry Smith   }
11513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1152289bc588SBarry Smith }
1153289bc588SBarry Smith 
11544a2ae208SSatish Balay #undef __FUNCT__
11554a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense"
1156dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg)
1157289bc588SBarry Smith {
1158c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data;
1159c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data;
116013f74950SBarry Smith   PetscInt     i,j;
116187828ca2SBarry Smith   PetscScalar  *v1 = mat1->v,*v2 = mat2->v;
11629ea5d5aeSSatish Balay 
11633a40ed3dSBarry Smith   PetscFunctionBegin;
1164d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1165d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1166d0f46423SBarry Smith   for (i=0; i<A1->rmap->n; i++) {
11671b807ce4Svictorle     v1 = mat1->v+i; v2 = mat2->v+i;
1168d0f46423SBarry Smith     for (j=0; j<A1->cmap->n; j++) {
11693a40ed3dSBarry Smith       if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
11701b807ce4Svictorle       v1 += mat1->lda; v2 += mat2->lda;
11711b807ce4Svictorle     }
1172289bc588SBarry Smith   }
117377c4ece6SBarry Smith   *flg = PETSC_TRUE;
11743a40ed3dSBarry Smith   PetscFunctionReturn(0);
1175289bc588SBarry Smith }
1176289bc588SBarry Smith 
11774a2ae208SSatish Balay #undef __FUNCT__
11784a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense"
1179dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1180289bc588SBarry Smith {
1181c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
1182dfbe8321SBarry Smith   PetscErrorCode ierr;
118313f74950SBarry Smith   PetscInt       i,n,len;
118487828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
118544cd7ae7SLois Curfman McInnes 
11863a40ed3dSBarry Smith   PetscFunctionBegin;
11872dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
11887a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
11891ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1190d0f46423SBarry Smith   len = PetscMin(A->rmap->n,A->cmap->n);
1191d0f46423SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
119244cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
11931b807ce4Svictorle     x[i] = mat->v[i*mat->lda + i];
1194289bc588SBarry Smith   }
11951ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
11963a40ed3dSBarry Smith   PetscFunctionReturn(0);
1197289bc588SBarry Smith }
1198289bc588SBarry Smith 
11994a2ae208SSatish Balay #undef __FUNCT__
12004a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense"
1201dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1202289bc588SBarry Smith {
1203c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
120487828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
1205dfbe8321SBarry Smith   PetscErrorCode ierr;
1206d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n;
120755659b69SBarry Smith 
12083a40ed3dSBarry Smith   PetscFunctionBegin;
120928988994SBarry Smith   if (ll) {
12107a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
12111ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
1212d0f46423SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1213da3a660dSBarry Smith     for (i=0; i<m; i++) {
1214da3a660dSBarry Smith       x = l[i];
1215da3a660dSBarry Smith       v = mat->v + i;
1216da3a660dSBarry Smith       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
1217da3a660dSBarry Smith     }
12181ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
1219efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
1220da3a660dSBarry Smith   }
122128988994SBarry Smith   if (rr) {
12227a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
12231ebc52fbSHong Zhang     ierr = VecGetArray(rr,&r);CHKERRQ(ierr);
1224d0f46423SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1225da3a660dSBarry Smith     for (i=0; i<n; i++) {
1226da3a660dSBarry Smith       x = r[i];
1227da3a660dSBarry Smith       v = mat->v + i*m;
1228da3a660dSBarry Smith       for (j=0; j<m; j++) { (*v++) *= x;}
1229da3a660dSBarry Smith     }
12301ebc52fbSHong Zhang     ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr);
1231efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
1232da3a660dSBarry Smith   }
12333a40ed3dSBarry Smith   PetscFunctionReturn(0);
1234289bc588SBarry Smith }
1235289bc588SBarry Smith 
12364a2ae208SSatish Balay #undef __FUNCT__
12374a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense"
1238dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1239289bc588SBarry Smith {
1240c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
124187828ca2SBarry Smith   PetscScalar  *v = mat->v;
1242329f5518SBarry Smith   PetscReal    sum = 0.0;
1243d0f46423SBarry Smith   PetscInt     lda=mat->lda,m=A->rmap->n,i,j;
1244efee365bSSatish Balay   PetscErrorCode ierr;
124555659b69SBarry Smith 
12463a40ed3dSBarry Smith   PetscFunctionBegin;
1247289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1248a5ce6ee0Svictorle     if (lda>m) {
1249d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1250a5ce6ee0Svictorle 	v = mat->v+j*lda;
1251a5ce6ee0Svictorle 	for (i=0; i<m; i++) {
1252a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX)
1253a5ce6ee0Svictorle 	  sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1254a5ce6ee0Svictorle #else
1255a5ce6ee0Svictorle 	  sum += (*v)*(*v); v++;
1256a5ce6ee0Svictorle #endif
1257a5ce6ee0Svictorle 	}
1258a5ce6ee0Svictorle       }
1259a5ce6ee0Svictorle     } else {
1260d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1261aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1262329f5518SBarry Smith 	sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1263289bc588SBarry Smith #else
1264289bc588SBarry Smith 	sum += (*v)*(*v); v++;
1265289bc588SBarry Smith #endif
1266289bc588SBarry Smith       }
1267a5ce6ee0Svictorle     }
1268064f8208SBarry Smith     *nrm = sqrt(sum);
1269dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
12703a40ed3dSBarry Smith   } else if (type == NORM_1) {
1271064f8208SBarry Smith     *nrm = 0.0;
1272d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
12731b807ce4Svictorle       v = mat->v + j*mat->lda;
1274289bc588SBarry Smith       sum = 0.0;
1275d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
127633a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1277289bc588SBarry Smith       }
1278064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1279289bc588SBarry Smith     }
1280d0f46423SBarry Smith     ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
12813a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1282064f8208SBarry Smith     *nrm = 0.0;
1283d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
1284289bc588SBarry Smith       v = mat->v + j;
1285289bc588SBarry Smith       sum = 0.0;
1286d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
12871b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1288289bc588SBarry Smith       }
1289064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1290289bc588SBarry Smith     }
1291d0f46423SBarry Smith     ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
12923a40ed3dSBarry Smith   } else {
129329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"No two norm");
1294289bc588SBarry Smith   }
12953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1296289bc588SBarry Smith }
1297289bc588SBarry Smith 
12984a2ae208SSatish Balay #undef __FUNCT__
12994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense"
13004e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscTruth flg)
1301289bc588SBarry Smith {
1302c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
130363ba0a88SBarry Smith   PetscErrorCode ierr;
130467e560aaSBarry Smith 
13053a40ed3dSBarry Smith   PetscFunctionBegin;
1306b5a2b587SKris Buschelman   switch (op) {
1307b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
13084e0d8c25SBarry Smith     aij->roworiented = flg;
1309b5a2b587SKris Buschelman     break;
1310512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1311b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
13123971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
13134e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1314b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1315b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
131677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
131777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13189a4540c5SBarry Smith   case MAT_HERMITIAN:
13199a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1320600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
1321290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
132277e54ba9SKris Buschelman     break;
1323b5a2b587SKris Buschelman   default:
1324600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
13253a40ed3dSBarry Smith   }
13263a40ed3dSBarry Smith   PetscFunctionReturn(0);
1327289bc588SBarry Smith }
1328289bc588SBarry Smith 
13294a2ae208SSatish Balay #undef __FUNCT__
13304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense"
1331dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A)
13326f0a148fSBarry Smith {
1333ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
13346849ba73SBarry Smith   PetscErrorCode ierr;
1335d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
13363a40ed3dSBarry Smith 
13373a40ed3dSBarry Smith   PetscFunctionBegin;
1338a5ce6ee0Svictorle   if (lda>m) {
1339d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1340a5ce6ee0Svictorle       ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
1341a5ce6ee0Svictorle     }
1342a5ce6ee0Svictorle   } else {
1343d0f46423SBarry Smith     ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1344a5ce6ee0Svictorle   }
13453a40ed3dSBarry Smith   PetscFunctionReturn(0);
13466f0a148fSBarry Smith }
13476f0a148fSBarry Smith 
13484a2ae208SSatish Balay #undef __FUNCT__
13494a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense"
1350f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
13516f0a148fSBarry Smith {
1352ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
1353d0f46423SBarry Smith   PetscInt       n = A->cmap->n,i,j;
135487828ca2SBarry Smith   PetscScalar    *slot;
135555659b69SBarry Smith 
13563a40ed3dSBarry Smith   PetscFunctionBegin;
13576f0a148fSBarry Smith   for (i=0; i<N; i++) {
13586f0a148fSBarry Smith     slot = l->v + rows[i];
13596f0a148fSBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += n;}
13606f0a148fSBarry Smith   }
1361f4df32b1SMatthew Knepley   if (diag != 0.0) {
13626f0a148fSBarry Smith     for (i=0; i<N; i++) {
13636f0a148fSBarry Smith       slot = l->v + (n+1)*rows[i];
1364f4df32b1SMatthew Knepley       *slot = diag;
13656f0a148fSBarry Smith     }
13666f0a148fSBarry Smith   }
13673a40ed3dSBarry Smith   PetscFunctionReturn(0);
13686f0a148fSBarry Smith }
1369557bce09SLois Curfman McInnes 
13704a2ae208SSatish Balay #undef __FUNCT__
13714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense"
1372dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[])
137364e87e97SBarry Smith {
1374c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
13753a40ed3dSBarry Smith 
13763a40ed3dSBarry Smith   PetscFunctionBegin;
1377d0f46423SBarry Smith   if (mat->lda != A->rmap->n) SETERRQ(PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows");
137864e87e97SBarry Smith   *array = mat->v;
13793a40ed3dSBarry Smith   PetscFunctionReturn(0);
138064e87e97SBarry Smith }
13810754003eSLois Curfman McInnes 
13824a2ae208SSatish Balay #undef __FUNCT__
13834a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense"
1384dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[])
1385ff14e315SSatish Balay {
13863a40ed3dSBarry Smith   PetscFunctionBegin;
138709b544d4SBarry Smith   *array = 0; /* user cannot accidently use the array later */
13883a40ed3dSBarry Smith   PetscFunctionReturn(0);
1389ff14e315SSatish Balay }
13900754003eSLois Curfman McInnes 
13914a2ae208SSatish Balay #undef __FUNCT__
13924a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense"
139313f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
13940754003eSLois Curfman McInnes {
1395c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
13966849ba73SBarry Smith   PetscErrorCode ierr;
13975d0c19d7SBarry Smith   PetscInt       i,j,nrows,ncols;
13985d0c19d7SBarry Smith   const PetscInt *irow,*icol;
139987828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
14000754003eSLois Curfman McInnes   Mat            newmat;
14010754003eSLois Curfman McInnes 
14023a40ed3dSBarry Smith   PetscFunctionBegin;
140378b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
140478b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
1405e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
1406e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
14070754003eSLois Curfman McInnes 
1408182d2002SSatish Balay   /* Check submatrixcall */
1409182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
141013f74950SBarry Smith     PetscInt n_cols,n_rows;
1411182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
141221a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
141321a2c019SBarry Smith       /* resize the result result matrix to match number of requested rows/columns */
1414c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
141521a2c019SBarry Smith     }
1416182d2002SSatish Balay     newmat = *B;
1417182d2002SSatish Balay   } else {
14180754003eSLois Curfman McInnes     /* Create and fill new matrix */
14197adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
1420f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
14217adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
14225c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
1423182d2002SSatish Balay   }
1424182d2002SSatish Balay 
1425182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
1426182d2002SSatish Balay   bv = ((Mat_SeqDense*)newmat->data)->v;
1427182d2002SSatish Balay 
1428182d2002SSatish Balay   for (i=0; i<ncols; i++) {
14296de62eeeSBarry Smith     av = v + mat->lda*icol[i];
1430182d2002SSatish Balay     for (j=0; j<nrows; j++) {
1431182d2002SSatish Balay       *bv++ = av[irow[j]];
14320754003eSLois Curfman McInnes     }
14330754003eSLois Curfman McInnes   }
1434182d2002SSatish Balay 
1435182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
14366d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14376d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14380754003eSLois Curfman McInnes 
14390754003eSLois Curfman McInnes   /* Free work space */
144078b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
144178b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
1442182d2002SSatish Balay   *B = newmat;
14433a40ed3dSBarry Smith   PetscFunctionReturn(0);
14440754003eSLois Curfman McInnes }
14450754003eSLois Curfman McInnes 
14464a2ae208SSatish Balay #undef __FUNCT__
14474a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense"
144813f74950SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1449905e6a2fSBarry Smith {
14506849ba73SBarry Smith   PetscErrorCode ierr;
145113f74950SBarry Smith   PetscInt       i;
1452905e6a2fSBarry Smith 
14533a40ed3dSBarry Smith   PetscFunctionBegin;
1454905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
1455b0a32e0cSBarry Smith     ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr);
1456905e6a2fSBarry Smith   }
1457905e6a2fSBarry Smith 
1458905e6a2fSBarry Smith   for (i=0; i<n; i++) {
14596a6a5d1dSBarry Smith     ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr);
1460905e6a2fSBarry Smith   }
14613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1462905e6a2fSBarry Smith }
1463905e6a2fSBarry Smith 
14644a2ae208SSatish Balay #undef __FUNCT__
1465c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyBegin_SeqDense"
1466c0aa2d19SHong Zhang PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
1467c0aa2d19SHong Zhang {
1468c0aa2d19SHong Zhang   PetscFunctionBegin;
1469c0aa2d19SHong Zhang   PetscFunctionReturn(0);
1470c0aa2d19SHong Zhang }
1471c0aa2d19SHong Zhang 
1472c0aa2d19SHong Zhang #undef __FUNCT__
1473c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyEnd_SeqDense"
1474c0aa2d19SHong Zhang PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
1475c0aa2d19SHong Zhang {
1476c0aa2d19SHong Zhang   PetscFunctionBegin;
1477c0aa2d19SHong Zhang   PetscFunctionReturn(0);
1478c0aa2d19SHong Zhang }
1479c0aa2d19SHong Zhang 
1480c0aa2d19SHong Zhang #undef __FUNCT__
14814a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense"
1482dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
14834b0e389bSBarry Smith {
14844b0e389bSBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data;
14856849ba73SBarry Smith   PetscErrorCode ierr;
1486d0f46423SBarry Smith   PetscInt       lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
14873a40ed3dSBarry Smith 
14883a40ed3dSBarry Smith   PetscFunctionBegin;
148933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
149033f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
1491cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
14923a40ed3dSBarry Smith     PetscFunctionReturn(0);
14933a40ed3dSBarry Smith   }
1494d0f46423SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
1495a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
14960dbb7854Svictorle     for (j=0; j<n; j++) {
1497a5ce6ee0Svictorle       ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr);
1498a5ce6ee0Svictorle     }
1499a5ce6ee0Svictorle   } else {
1500d0f46423SBarry Smith     ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1501a5ce6ee0Svictorle   }
1502273d9f13SBarry Smith   PetscFunctionReturn(0);
1503273d9f13SBarry Smith }
1504273d9f13SBarry Smith 
15054a2ae208SSatish Balay #undef __FUNCT__
15064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense"
1507dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A)
1508273d9f13SBarry Smith {
1509dfbe8321SBarry Smith   PetscErrorCode ierr;
1510273d9f13SBarry Smith 
1511273d9f13SBarry Smith   PetscFunctionBegin;
1512273d9f13SBarry Smith   ierr =  MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr);
15133a40ed3dSBarry Smith   PetscFunctionReturn(0);
15144b0e389bSBarry Smith }
15154b0e389bSBarry Smith 
1516284134d9SBarry Smith #undef __FUNCT__
1517284134d9SBarry Smith #define __FUNCT__ "MatSetSizes_SeqDense"
1518284134d9SBarry Smith PetscErrorCode MatSetSizes_SeqDense(Mat A,PetscInt m,PetscInt n,PetscInt M,PetscInt N)
1519284134d9SBarry Smith {
1520284134d9SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1521284134d9SBarry Smith   PetscFunctionBegin;
152221a2c019SBarry Smith   /* this will not be called before lda, Mmax,  and Nmax have been set */
1523284134d9SBarry Smith   m = PetscMax(m,M);
1524284134d9SBarry Smith   n = PetscMax(n,N);
152521a2c019SBarry Smith   if (m > a->Mmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number rows of dense matrix larger then its initial size %d, requested %d",a->lda,(int)m);
1526284134d9SBarry Smith   if (n > a->Nmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number columns of dense matrix larger then its initial size %d, requested %d",a->Nmax,(int)n);
1527d0f46423SBarry Smith   A->rmap->n = A->rmap->n = m;
1528d0f46423SBarry Smith   A->cmap->n = A->cmap->N = n;
152921a2c019SBarry Smith   if (a->changelda) a->lda = m;
1530284134d9SBarry Smith   PetscFunctionReturn(0);
1531284134d9SBarry Smith }
1532170fe5c8SBarry Smith 
1533284134d9SBarry Smith 
1534a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
1535a9fe9ddaSSatish Balay #undef __FUNCT__
1536a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMult_SeqDense_SeqDense"
1537a9fe9ddaSSatish Balay PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1538a9fe9ddaSSatish Balay {
1539a9fe9ddaSSatish Balay   PetscErrorCode ierr;
1540a9fe9ddaSSatish Balay 
1541a9fe9ddaSSatish Balay   PetscFunctionBegin;
1542a9fe9ddaSSatish Balay   if (scall == MAT_INITIAL_MATRIX){
1543a9fe9ddaSSatish Balay     ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr);
1544a9fe9ddaSSatish Balay   }
1545a9fe9ddaSSatish Balay   ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr);
1546a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1547a9fe9ddaSSatish Balay }
1548a9fe9ddaSSatish Balay 
1549a9fe9ddaSSatish Balay #undef __FUNCT__
1550a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultSymbolic_SeqDense_SeqDense"
1551a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C)
1552a9fe9ddaSSatish Balay {
1553ee16a9a1SHong Zhang   PetscErrorCode ierr;
1554d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
1555ee16a9a1SHong Zhang   Mat            Cmat;
1556a9fe9ddaSSatish Balay 
1557ee16a9a1SHong Zhang   PetscFunctionBegin;
1558d0f46423SBarry Smith   if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n);
1559ee16a9a1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr);
1560ee16a9a1SHong Zhang   ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr);
1561ee16a9a1SHong Zhang   ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr);
1562ee16a9a1SHong Zhang   ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr);
1563ee16a9a1SHong Zhang   Cmat->assembled = PETSC_TRUE;
1564ee16a9a1SHong Zhang   *C = Cmat;
1565ee16a9a1SHong Zhang   PetscFunctionReturn(0);
1566ee16a9a1SHong Zhang }
1567a9fe9ddaSSatish Balay 
156898a3b096SSatish Balay #undef __FUNCT__
1569a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultNumeric_SeqDense_SeqDense"
1570a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
1571a9fe9ddaSSatish Balay {
1572a9fe9ddaSSatish Balay   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1573a9fe9ddaSSatish Balay   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
1574a9fe9ddaSSatish Balay   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
15750805154bSBarry Smith   PetscBLASInt   m,n,k;
1576a9fe9ddaSSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
1577a9fe9ddaSSatish Balay 
1578a9fe9ddaSSatish Balay   PetscFunctionBegin;
1579d0f46423SBarry Smith   m = PetscBLASIntCast(A->rmap->n);
1580d0f46423SBarry Smith   n = PetscBLASIntCast(B->cmap->n);
1581d0f46423SBarry Smith   k = PetscBLASIntCast(A->cmap->n);
1582a9fe9ddaSSatish Balay   BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda);
1583a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1584a9fe9ddaSSatish Balay }
1585a9fe9ddaSSatish Balay 
1586a9fe9ddaSSatish Balay #undef __FUNCT__
1587a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTranspose_SeqDense_SeqDense"
1588a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTranspose_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1589a9fe9ddaSSatish Balay {
1590a9fe9ddaSSatish Balay   PetscErrorCode ierr;
1591a9fe9ddaSSatish Balay 
1592a9fe9ddaSSatish Balay   PetscFunctionBegin;
1593a9fe9ddaSSatish Balay   if (scall == MAT_INITIAL_MATRIX){
1594a9fe9ddaSSatish Balay     ierr = MatMatMultTransposeSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr);
1595a9fe9ddaSSatish Balay   }
1596a9fe9ddaSSatish Balay   ierr = MatMatMultTransposeNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr);
1597a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1598a9fe9ddaSSatish Balay }
1599a9fe9ddaSSatish Balay 
1600a9fe9ddaSSatish Balay #undef __FUNCT__
1601a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeSymbolic_SeqDense_SeqDense"
1602a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C)
1603a9fe9ddaSSatish Balay {
1604ee16a9a1SHong Zhang   PetscErrorCode ierr;
1605d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
1606ee16a9a1SHong Zhang   Mat            Cmat;
1607a9fe9ddaSSatish Balay 
1608ee16a9a1SHong Zhang   PetscFunctionBegin;
1609d0f46423SBarry Smith   if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n);
1610ee16a9a1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr);
1611ee16a9a1SHong Zhang   ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr);
1612ee16a9a1SHong Zhang   ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr);
1613ee16a9a1SHong Zhang   ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr);
1614ee16a9a1SHong Zhang   Cmat->assembled = PETSC_TRUE;
1615ee16a9a1SHong Zhang   *C = Cmat;
1616ee16a9a1SHong Zhang   PetscFunctionReturn(0);
1617ee16a9a1SHong Zhang }
1618a9fe9ddaSSatish Balay 
1619a9fe9ddaSSatish Balay #undef __FUNCT__
1620a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeNumeric_SeqDense_SeqDense"
1621a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
1622a9fe9ddaSSatish Balay {
1623a9fe9ddaSSatish Balay   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1624a9fe9ddaSSatish Balay   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
1625a9fe9ddaSSatish Balay   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
16260805154bSBarry Smith   PetscBLASInt   m,n,k;
1627a9fe9ddaSSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
1628a9fe9ddaSSatish Balay 
1629a9fe9ddaSSatish Balay   PetscFunctionBegin;
1630d0f46423SBarry Smith   m = PetscBLASIntCast(A->cmap->n);
1631d0f46423SBarry Smith   n = PetscBLASIntCast(B->cmap->n);
1632d0f46423SBarry Smith   k = PetscBLASIntCast(A->rmap->n);
16332fbe02b9SBarry Smith   /*
16342fbe02b9SBarry Smith      Note the m and n arguments below are the number rows and columns of A', not A!
16352fbe02b9SBarry Smith   */
1636a9fe9ddaSSatish Balay   BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda);
1637a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1638a9fe9ddaSSatish Balay }
1639985db425SBarry Smith 
1640985db425SBarry Smith #undef __FUNCT__
1641985db425SBarry Smith #define __FUNCT__ "MatGetRowMax_SeqDense"
1642985db425SBarry Smith PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
1643985db425SBarry Smith {
1644985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1645985db425SBarry Smith   PetscErrorCode ierr;
1646d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
1647985db425SBarry Smith   PetscScalar    *x;
1648985db425SBarry Smith   MatScalar      *aa = a->v;
1649985db425SBarry Smith 
1650985db425SBarry Smith   PetscFunctionBegin;
1651985db425SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1652985db425SBarry Smith 
1653985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
1654985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1655985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
1656d0f46423SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
1657985db425SBarry Smith   for (i=0; i<m; i++) {
1658985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
1659985db425SBarry Smith     for (j=1; j<n; j++){
1660985db425SBarry Smith       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;}
1661985db425SBarry Smith     }
1662985db425SBarry Smith   }
1663985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
1664985db425SBarry Smith   PetscFunctionReturn(0);
1665985db425SBarry Smith }
1666985db425SBarry Smith 
1667985db425SBarry Smith #undef __FUNCT__
1668985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqDense"
1669985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
1670985db425SBarry Smith {
1671985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1672985db425SBarry Smith   PetscErrorCode ierr;
1673d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
1674985db425SBarry Smith   PetscScalar    *x;
1675985db425SBarry Smith   PetscReal      atmp;
1676985db425SBarry Smith   MatScalar      *aa = a->v;
1677985db425SBarry Smith 
1678985db425SBarry Smith   PetscFunctionBegin;
1679985db425SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1680985db425SBarry Smith 
1681985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
1682985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1683985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
1684d0f46423SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
1685985db425SBarry Smith   for (i=0; i<m; i++) {
16869189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
1687985db425SBarry Smith     for (j=1; j<n; j++){
1688985db425SBarry Smith       atmp = PetscAbsScalar(aa[i+m*j]);
1689985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
1690985db425SBarry Smith     }
1691985db425SBarry Smith   }
1692985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
1693985db425SBarry Smith   PetscFunctionReturn(0);
1694985db425SBarry Smith }
1695985db425SBarry Smith 
1696985db425SBarry Smith #undef __FUNCT__
1697985db425SBarry Smith #define __FUNCT__ "MatGetRowMin_SeqDense"
1698985db425SBarry Smith PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
1699985db425SBarry Smith {
1700985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1701985db425SBarry Smith   PetscErrorCode ierr;
1702d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
1703985db425SBarry Smith   PetscScalar    *x;
1704985db425SBarry Smith   MatScalar      *aa = a->v;
1705985db425SBarry Smith 
1706985db425SBarry Smith   PetscFunctionBegin;
1707985db425SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1708985db425SBarry Smith 
1709985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
1710985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1711985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
1712d0f46423SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
1713985db425SBarry Smith   for (i=0; i<m; i++) {
1714985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
1715985db425SBarry Smith     for (j=1; j<n; j++){
1716985db425SBarry Smith       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;}
1717985db425SBarry Smith     }
1718985db425SBarry Smith   }
1719985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
1720985db425SBarry Smith   PetscFunctionReturn(0);
1721985db425SBarry Smith }
1722985db425SBarry Smith 
17238d0534beSBarry Smith #undef __FUNCT__
17248d0534beSBarry Smith #define __FUNCT__ "MatGetColumnVector_SeqDense"
17258d0534beSBarry Smith PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
17268d0534beSBarry Smith {
17278d0534beSBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
17288d0534beSBarry Smith   PetscErrorCode ierr;
17298d0534beSBarry Smith   PetscScalar    *x;
17308d0534beSBarry Smith 
17318d0534beSBarry Smith   PetscFunctionBegin;
17328d0534beSBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
17338d0534beSBarry Smith 
17348d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1735d0f46423SBarry Smith   ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
17368d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
17378d0534beSBarry Smith   PetscFunctionReturn(0);
17388d0534beSBarry Smith }
17398d0534beSBarry Smith 
1740289bc588SBarry Smith /* -------------------------------------------------------------------*/
1741a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense,
1742905e6a2fSBarry Smith        MatGetRow_SeqDense,
1743905e6a2fSBarry Smith        MatRestoreRow_SeqDense,
1744905e6a2fSBarry Smith        MatMult_SeqDense,
174597304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense,
17467c922b88SBarry Smith        MatMultTranspose_SeqDense,
17477c922b88SBarry Smith        MatMultTransposeAdd_SeqDense,
1748db4efbfdSBarry Smith        0,
1749db4efbfdSBarry Smith        0,
1750db4efbfdSBarry Smith        0,
1751db4efbfdSBarry Smith /*10*/ 0,
1752905e6a2fSBarry Smith        MatLUFactor_SeqDense,
1753905e6a2fSBarry Smith        MatCholeskyFactor_SeqDense,
1754ec8511deSBarry Smith        MatRelax_SeqDense,
1755ec8511deSBarry Smith        MatTranspose_SeqDense,
175697304618SKris Buschelman /*15*/ MatGetInfo_SeqDense,
1757905e6a2fSBarry Smith        MatEqual_SeqDense,
1758905e6a2fSBarry Smith        MatGetDiagonal_SeqDense,
1759905e6a2fSBarry Smith        MatDiagonalScale_SeqDense,
1760905e6a2fSBarry Smith        MatNorm_SeqDense,
1761c0aa2d19SHong Zhang /*20*/ MatAssemblyBegin_SeqDense,
1762c0aa2d19SHong Zhang        MatAssemblyEnd_SeqDense,
1763905e6a2fSBarry Smith        MatSetOption_SeqDense,
1764905e6a2fSBarry Smith        MatZeroEntries_SeqDense,
1765d519adbfSMatthew Knepley /*24*/ MatZeroRows_SeqDense,
1766db4efbfdSBarry Smith        0,
1767db4efbfdSBarry Smith        0,
1768db4efbfdSBarry Smith        0,
1769db4efbfdSBarry Smith        0,
1770d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_SeqDense,
1771273d9f13SBarry Smith        0,
1772905e6a2fSBarry Smith        0,
1773905e6a2fSBarry Smith        MatGetArray_SeqDense,
1774905e6a2fSBarry Smith        MatRestoreArray_SeqDense,
1775d519adbfSMatthew Knepley /*34*/ MatDuplicate_SeqDense,
1776a5ae1ecdSBarry Smith        0,
1777a5ae1ecdSBarry Smith        0,
1778a5ae1ecdSBarry Smith        0,
1779a5ae1ecdSBarry Smith        0,
1780d519adbfSMatthew Knepley /*39*/ MatAXPY_SeqDense,
1781a5ae1ecdSBarry Smith        MatGetSubMatrices_SeqDense,
1782a5ae1ecdSBarry Smith        0,
17834b0e389bSBarry Smith        MatGetValues_SeqDense,
1784a5ae1ecdSBarry Smith        MatCopy_SeqDense,
1785d519adbfSMatthew Knepley /*44*/ MatGetRowMax_SeqDense,
1786a5ae1ecdSBarry Smith        MatScale_SeqDense,
1787a5ae1ecdSBarry Smith        0,
1788a5ae1ecdSBarry Smith        0,
1789a5ae1ecdSBarry Smith        0,
1790d519adbfSMatthew Knepley /*49*/ 0,
1791a5ae1ecdSBarry Smith        0,
1792a5ae1ecdSBarry Smith        0,
1793a5ae1ecdSBarry Smith        0,
1794a5ae1ecdSBarry Smith        0,
1795d519adbfSMatthew Knepley /*54*/ 0,
1796a5ae1ecdSBarry Smith        0,
1797a5ae1ecdSBarry Smith        0,
1798a5ae1ecdSBarry Smith        0,
1799a5ae1ecdSBarry Smith        0,
1800d519adbfSMatthew Knepley /*59*/ 0,
1801e03a110bSBarry Smith        MatDestroy_SeqDense,
1802e03a110bSBarry Smith        MatView_SeqDense,
1803357abbc8SBarry Smith        0,
180497304618SKris Buschelman        0,
1805d519adbfSMatthew Knepley /*64*/ 0,
180697304618SKris Buschelman        0,
180797304618SKris Buschelman        0,
180897304618SKris Buschelman        0,
180997304618SKris Buschelman        0,
1810d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_SeqDense,
181197304618SKris Buschelman        0,
181297304618SKris Buschelman        0,
181397304618SKris Buschelman        0,
181497304618SKris Buschelman        0,
1815d519adbfSMatthew Knepley /*74*/ 0,
181697304618SKris Buschelman        0,
181797304618SKris Buschelman        0,
181897304618SKris Buschelman        0,
181997304618SKris Buschelman        0,
1820d519adbfSMatthew Knepley /*79*/ 0,
182197304618SKris Buschelman        0,
182297304618SKris Buschelman        0,
182397304618SKris Buschelman        0,
1824d519adbfSMatthew Knepley /*83*/ MatLoad_SeqDense,
1825865e5f61SKris Buschelman        0,
18261cbb95d3SBarry Smith        MatIsHermitian_SeqDense,
1827865e5f61SKris Buschelman        0,
1828865e5f61SKris Buschelman        0,
1829865e5f61SKris Buschelman        0,
1830d519adbfSMatthew Knepley /*89*/ MatMatMult_SeqDense_SeqDense,
1831a9fe9ddaSSatish Balay        MatMatMultSymbolic_SeqDense_SeqDense,
1832a9fe9ddaSSatish Balay        MatMatMultNumeric_SeqDense_SeqDense,
1833865e5f61SKris Buschelman        0,
1834865e5f61SKris Buschelman        0,
1835d519adbfSMatthew Knepley /*94*/ 0,
1836a9fe9ddaSSatish Balay        MatMatMultTranspose_SeqDense_SeqDense,
1837a9fe9ddaSSatish Balay        MatMatMultTransposeSymbolic_SeqDense_SeqDense,
1838a9fe9ddaSSatish Balay        MatMatMultTransposeNumeric_SeqDense_SeqDense,
1839284134d9SBarry Smith        0,
1840d519adbfSMatthew Knepley /*99*/ 0,
1841284134d9SBarry Smith        0,
1842284134d9SBarry Smith        0,
1843284134d9SBarry Smith        0,
1844985db425SBarry Smith        MatSetSizes_SeqDense,
1845985db425SBarry Smith        0,
1846985db425SBarry Smith        0,
1847985db425SBarry Smith        0,
1848985db425SBarry Smith        0,
1849985db425SBarry Smith        0,
1850d519adbfSMatthew Knepley /*109*/0,
1851985db425SBarry Smith        0,
18528d0534beSBarry Smith        MatGetRowMin_SeqDense,
18538d0534beSBarry Smith        MatGetColumnVector_SeqDense
1854985db425SBarry Smith };
185590ace30eSBarry Smith 
18564a2ae208SSatish Balay #undef __FUNCT__
18574a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense"
18584b828684SBarry Smith /*@C
1859fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
1860d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
1861d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
1862289bc588SBarry Smith 
1863db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1864db81eaa0SLois Curfman McInnes 
186520563c6bSBarry Smith    Input Parameters:
1866db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
18670c775827SLois Curfman McInnes .  m - number of rows
186818f449edSLois Curfman McInnes .  n - number of columns
1869db81eaa0SLois Curfman McInnes -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1870dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
187120563c6bSBarry Smith 
187220563c6bSBarry Smith    Output Parameter:
187344cd7ae7SLois Curfman McInnes .  A - the matrix
187420563c6bSBarry Smith 
1875b259b22eSLois Curfman McInnes    Notes:
187618f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
187718f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
1878b4fd4287SBarry Smith    set data=PETSC_NULL.
187918f449edSLois Curfman McInnes 
1880027ccd11SLois Curfman McInnes    Level: intermediate
1881027ccd11SLois Curfman McInnes 
1882dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS
1883d65003e9SLois Curfman McInnes 
1884db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues()
188520563c6bSBarry Smith @*/
1886be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
1887289bc588SBarry Smith {
1888dfbe8321SBarry Smith   PetscErrorCode ierr;
18893b2fbd54SBarry Smith 
18903a40ed3dSBarry Smith   PetscFunctionBegin;
1891f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1892f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
1893273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1894273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1895273d9f13SBarry Smith   PetscFunctionReturn(0);
1896273d9f13SBarry Smith }
1897273d9f13SBarry Smith 
18984a2ae208SSatish Balay #undef __FUNCT__
1899afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation"
1900273d9f13SBarry Smith /*@C
1901273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
1902273d9f13SBarry Smith 
1903273d9f13SBarry Smith    Collective on MPI_Comm
1904273d9f13SBarry Smith 
1905273d9f13SBarry Smith    Input Parameters:
1906273d9f13SBarry Smith +  A - the matrix
1907273d9f13SBarry Smith -  data - the array (or PETSC_NULL)
1908273d9f13SBarry Smith 
1909273d9f13SBarry Smith    Notes:
1910273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1911273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1912284134d9SBarry Smith    need not call this routine.
1913273d9f13SBarry Smith 
1914273d9f13SBarry Smith    Level: intermediate
1915273d9f13SBarry Smith 
1916273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS
1917273d9f13SBarry Smith 
1918867c911aSBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues(), MatSeqDenseSetLDA()
1919867c911aSBarry Smith 
1920273d9f13SBarry Smith @*/
1921be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
1922273d9f13SBarry Smith {
1923dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar[]);
1924a23d5eceSKris Buschelman 
1925a23d5eceSKris Buschelman   PetscFunctionBegin;
1926a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1927a23d5eceSKris Buschelman   if (f) {
1928a23d5eceSKris Buschelman     ierr = (*f)(B,data);CHKERRQ(ierr);
1929a23d5eceSKris Buschelman   }
1930a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1931a23d5eceSKris Buschelman }
1932a23d5eceSKris Buschelman 
1933a23d5eceSKris Buschelman EXTERN_C_BEGIN
1934a23d5eceSKris Buschelman #undef __FUNCT__
1935afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation_SeqDense"
1936be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
1937a23d5eceSKris Buschelman {
1938273d9f13SBarry Smith   Mat_SeqDense   *b;
1939dfbe8321SBarry Smith   PetscErrorCode ierr;
1940273d9f13SBarry Smith 
1941273d9f13SBarry Smith   PetscFunctionBegin;
1942273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1943273d9f13SBarry Smith   b               = (Mat_SeqDense*)B->data;
1944d0f46423SBarry Smith   if (b->lda <= 0) b->lda = B->rmap->n;
19459e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
19469e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
19475afd5e0cSBarry Smith     ierr = PetscMalloc(b->lda*b->Nmax*sizeof(PetscScalar),&b->v);CHKERRQ(ierr);
1948284134d9SBarry Smith     ierr = PetscMemzero(b->v,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr);
1949284134d9SBarry Smith     ierr = PetscLogObjectMemory(B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr);
19509e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
1951273d9f13SBarry Smith   } else { /* user-allocated storage */
19529e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
1953273d9f13SBarry Smith     b->v          = data;
1954273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
1955273d9f13SBarry Smith   }
19560450473dSBarry Smith   B->assembled = PETSC_TRUE;
1957273d9f13SBarry Smith   PetscFunctionReturn(0);
1958273d9f13SBarry Smith }
1959a23d5eceSKris Buschelman EXTERN_C_END
1960273d9f13SBarry Smith 
19611b807ce4Svictorle #undef __FUNCT__
19621b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA"
19631b807ce4Svictorle /*@C
19641b807ce4Svictorle   MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array
19651b807ce4Svictorle 
19661b807ce4Svictorle   Input parameter:
19671b807ce4Svictorle + A - the matrix
19681b807ce4Svictorle - lda - the leading dimension
19691b807ce4Svictorle 
19701b807ce4Svictorle   Notes:
1971867c911aSBarry Smith   This routine is to be used in conjunction with MatSeqDenseSetPreallocation();
19721b807ce4Svictorle   it asserts that the preallocation has a leading dimension (the LDA parameter
19731b807ce4Svictorle   of Blas and Lapack fame) larger than M, the first dimension of the matrix.
19741b807ce4Svictorle 
19751b807ce4Svictorle   Level: intermediate
19761b807ce4Svictorle 
19771b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS
19781b807ce4Svictorle 
1979284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize()
1980867c911aSBarry Smith 
19811b807ce4Svictorle @*/
1982be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat B,PetscInt lda)
19831b807ce4Svictorle {
19841b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
198521a2c019SBarry Smith 
19861b807ce4Svictorle   PetscFunctionBegin;
1987d0f46423SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
19881b807ce4Svictorle   b->lda       = lda;
198921a2c019SBarry Smith   b->changelda = PETSC_FALSE;
199021a2c019SBarry Smith   b->Mmax      = PetscMax(b->Mmax,lda);
19911b807ce4Svictorle   PetscFunctionReturn(0);
19921b807ce4Svictorle }
19931b807ce4Svictorle 
19940bad9183SKris Buschelman /*MC
1995fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
19960bad9183SKris Buschelman 
19970bad9183SKris Buschelman    Options Database Keys:
19980bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
19990bad9183SKris Buschelman 
20000bad9183SKris Buschelman   Level: beginner
20010bad9183SKris Buschelman 
200289665df3SBarry Smith .seealso: MatCreateSeqDense()
200389665df3SBarry Smith 
20040bad9183SKris Buschelman M*/
20050bad9183SKris Buschelman 
2006273d9f13SBarry Smith EXTERN_C_BEGIN
20074a2ae208SSatish Balay #undef __FUNCT__
20084a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense"
2009be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqDense(Mat B)
2010273d9f13SBarry Smith {
2011273d9f13SBarry Smith   Mat_SeqDense   *b;
2012dfbe8321SBarry Smith   PetscErrorCode ierr;
20137c334f02SBarry Smith   PetscMPIInt    size;
2014273d9f13SBarry Smith 
2015273d9f13SBarry Smith   PetscFunctionBegin;
20167adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
201729bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
201855659b69SBarry Smith 
20197408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,1);CHKERRQ(ierr);
20207408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,1);CHKERRQ(ierr);
2021d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2022d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2023273d9f13SBarry Smith 
202438f2d2fdSLisandro Dalcin   ierr            = PetscNewLog(B,Mat_SeqDense,&b);CHKERRQ(ierr);
2025549d3d68SSatish Balay   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
202690f02eecSBarry Smith   B->mapping      = 0;
202744cd7ae7SLois Curfman McInnes   B->data         = (void*)b;
202818f449edSLois Curfman McInnes 
2029a5ae1ecdSBarry Smith 
203044cd7ae7SLois Curfman McInnes   b->pivots       = 0;
2031273d9f13SBarry Smith   b->roworiented  = PETSC_TRUE;
2032273d9f13SBarry Smith   b->v            = 0;
2033d0f46423SBarry Smith   b->lda          = B->rmap->n;
203421a2c019SBarry Smith   b->changelda    = PETSC_FALSE;
2035d0f46423SBarry Smith   b->Mmax         = B->rmap->n;
2036d0f46423SBarry Smith   b->Nmax         = B->cmap->n;
20374e220ebcSLois Curfman McInnes 
2038b24902e0SBarry Smith 
2039*ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_petsc_C",
2040b24902e0SBarry Smith                                      "MatGetFactor_seqdense_petsc",
2041b24902e0SBarry Smith                                       MatGetFactor_seqdense_petsc);CHKERRQ(ierr);
2042a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C",
2043a23d5eceSKris Buschelman                                     "MatSeqDenseSetPreallocation_SeqDense",
2044a23d5eceSKris Buschelman                                      MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
20454ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMult_seqaij_seqdense_C",
20464ae313f4SHong Zhang                                      "MatMatMult_SeqAIJ_SeqDense",
20474ae313f4SHong Zhang                                       MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
20484ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C",
20494ae313f4SHong Zhang                                      "MatMatMultSymbolic_SeqAIJ_SeqDense",
20504ae313f4SHong Zhang                                       MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
20514ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C",
20524ae313f4SHong Zhang                                      "MatMatMultNumeric_SeqAIJ_SeqDense",
20534ae313f4SHong Zhang                                       MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
205417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
20553a40ed3dSBarry Smith   PetscFunctionReturn(0);
2056289bc588SBarry Smith }
2057c0aa2d19SHong Zhang 
2058c0aa2d19SHong Zhang 
2059273d9f13SBarry Smith EXTERN_C_END
2060