xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 0298fd7132830bec7daee99a80be0eddb2b310a5)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
17*0298fd71SBarry Smith .  path - the dynamic library path or NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57db31f6deSJed Brown #undef __FUNCT__
58db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
59db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
60db31f6deSJed Brown {
61db31f6deSJed Brown   PetscErrorCode ierr;
62db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
63db31f6deSJed Brown   PetscBool      iascii;
64db31f6deSJed Brown 
65db31f6deSJed Brown   PetscFunctionBegin;
66db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
67db31f6deSJed Brown   if (iascii) {
68db31f6deSJed Brown     PetscViewerFormat format;
69db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
70db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
7179673f7bSHong Zhang       /* call elemental viewing function */
722d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
73ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
74ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
754fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
7679673f7bSHong Zhang         /* call elemental viewing function */
7780622e0cSXuan Zhou         ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr);
784fe7bbcaSHong Zhang       }
7979673f7bSHong Zhang 
80db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
81db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
82db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
83db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
84db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
85834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
8661119200SXuan Zhou         Mat Adense;
870022473aSHong Zhang         ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
8861119200SXuan Zhou         ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
8961119200SXuan Zhou         ierr = MatView(Adense,viewer);CHKERRQ(ierr);
9061119200SXuan Zhou         ierr = MatDestroy(&Adense);CHKERRQ(ierr);
91834d3fecSHong Zhang       }
92db31f6deSJed Brown     } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format");
93d2daa67eSHong Zhang   } else {
945cb544a0SHong Zhang     /* convert to dense format and call MatView() */
9561119200SXuan Zhou     Mat Adense;
96d2daa67eSHong Zhang     ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
9761119200SXuan Zhou     ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
9861119200SXuan Zhou     ierr = MatView(Adense,viewer);CHKERRQ(ierr);
9961119200SXuan Zhou     ierr = MatDestroy(&Adense);CHKERRQ(ierr);
100d2daa67eSHong Zhang   }
101db31f6deSJed Brown   PetscFunctionReturn(0);
102db31f6deSJed Brown }
103db31f6deSJed Brown 
104db31f6deSJed Brown #undef __FUNCT__
105180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
10615767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
107180a43e4SHong Zhang {
10815767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
10915767789SHong Zhang   PetscMPIInt    rank;
11015767789SHong Zhang 
111180a43e4SHong Zhang   PetscFunctionBegin;
11215767789SHong Zhang   MPI_Comm_rank(((PetscObject)A)->comm,&rank);
11315767789SHong Zhang 
11415767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
1155cb544a0SHong Zhang   info->block_size     = 1.0;
11615767789SHong Zhang 
11715767789SHong Zhang   if (flag == MAT_LOCAL) {
11815767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
11915767789SHong Zhang     info->nz_used        = info->nz_allocated;
12015767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
12115767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
12215767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
12315767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
12415767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
12515767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
12615767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
12715767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
12815767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
12915767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
13015767789SHong Zhang   }
13115767789SHong Zhang 
13215767789SHong Zhang   info->nz_unneeded       = 0.0;
13315767789SHong Zhang   info->assemblies        = (double)A->num_ass;
13415767789SHong Zhang   info->mallocs           = 0;
13515767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
13615767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
13715767789SHong Zhang   info->fill_ratio_needed = 0;
13815767789SHong Zhang   info->factor_mallocs    = 0;
139180a43e4SHong Zhang   PetscFunctionReturn(0);
140180a43e4SHong Zhang }
141180a43e4SHong Zhang 
142180a43e4SHong Zhang #undef __FUNCT__
143db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
144e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
145db31f6deSJed Brown {
146db31f6deSJed Brown   PetscErrorCode ierr;
147db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
148db31f6deSJed Brown   PetscMPIInt    rank;
149db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
150db31f6deSJed Brown 
151db31f6deSJed Brown   PetscFunctionBegin;
152db31f6deSJed Brown   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
153db31f6deSJed Brown 
154db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
155db31f6deSJed Brown   for (i=0; i<nr; i++) {
156db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
157db31f6deSJed Brown     if (rows[i] < 0) continue;
158db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
159db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
160db31f6deSJed Brown     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation");
161db31f6deSJed Brown     for (j=0; j<nc; j++) {
162db31f6deSJed Brown       if (cols[j] < 0) continue;
163db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
164db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
165db31f6deSJed Brown       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation");
166aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
167aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
168aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
169e6dea9dbSXuan Zhou         a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]);
170aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
171aae2c449SHong Zhang         continue;
172ed36708cSHong Zhang       }
173db31f6deSJed Brown       elrow = erow / grid.MCSize();
174db31f6deSJed Brown       elcol = ecol / grid.MRSize();
175db31f6deSJed Brown       switch (imode) {
176e6dea9dbSXuan Zhou       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
177e6dea9dbSXuan Zhou       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
178db31f6deSJed Brown       default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
179db31f6deSJed Brown       }
180db31f6deSJed Brown     }
181db31f6deSJed Brown   }
182db31f6deSJed Brown   PetscFunctionReturn(0);
183db31f6deSJed Brown }
184db31f6deSJed Brown 
185db31f6deSJed Brown #undef __FUNCT__
186db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
187db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
188db31f6deSJed Brown {
189db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
190db31f6deSJed Brown   PetscErrorCode        ierr;
191e6dea9dbSXuan Zhou   const PetscElemScalar *x;
192e6dea9dbSXuan Zhou   PetscElemScalar       *y;
193df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
194db31f6deSJed Brown 
195db31f6deSJed Brown   PetscFunctionBegin;
196e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
197e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
198db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
199df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
200df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
201db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
202db31f6deSJed Brown   }
203e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
204e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
205db31f6deSJed Brown   PetscFunctionReturn(0);
206db31f6deSJed Brown }
207db31f6deSJed Brown 
208db31f6deSJed Brown #undef __FUNCT__
2099426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2109426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2119426833fSXuan Zhou {
2129426833fSXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
2139426833fSXuan Zhou   PetscErrorCode        ierr;
214df311e6cSXuan Zhou   const PetscElemScalar *x;
215df311e6cSXuan Zhou   PetscElemScalar       *y;
216e6dea9dbSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
2179426833fSXuan Zhou 
2189426833fSXuan Zhou   PetscFunctionBegin;
219e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
220e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2219426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
222df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
223df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2249426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2259426833fSXuan Zhou   }
226e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
227e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2289426833fSXuan Zhou   PetscFunctionReturn(0);
2299426833fSXuan Zhou }
2309426833fSXuan Zhou 
2319426833fSXuan Zhou #undef __FUNCT__
232db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
233db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
234db31f6deSJed Brown {
235db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
236db31f6deSJed Brown   PetscErrorCode        ierr;
237df311e6cSXuan Zhou   const PetscElemScalar *x;
238df311e6cSXuan Zhou   PetscElemScalar       *z;
239e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
240db31f6deSJed Brown 
241db31f6deSJed Brown   PetscFunctionBegin;
242db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
243e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
244e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
245db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
246df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
247df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
248db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
249db31f6deSJed Brown   }
250e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
251e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
252db31f6deSJed Brown   PetscFunctionReturn(0);
253db31f6deSJed Brown }
254db31f6deSJed Brown 
255db31f6deSJed Brown #undef __FUNCT__
256e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
257e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
258e883f9d5SXuan Zhou {
259e883f9d5SXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
260e883f9d5SXuan Zhou   PetscErrorCode        ierr;
261df311e6cSXuan Zhou   const PetscElemScalar *x;
262df311e6cSXuan Zhou   PetscElemScalar       *z;
263e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
264e883f9d5SXuan Zhou 
265e883f9d5SXuan Zhou   PetscFunctionBegin;
266e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
267e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
268e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
269e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
270df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
271df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
272e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
273e883f9d5SXuan Zhou   }
274e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
275e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
276e883f9d5SXuan Zhou   PetscFunctionReturn(0);
277e883f9d5SXuan Zhou }
278e883f9d5SXuan Zhou 
279e883f9d5SXuan Zhou #undef __FUNCT__
2809a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
2819a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
282c1d1b975SXuan Zhou {
283c1d1b975SXuan Zhou   Mat_Elemental    *a = (Mat_Elemental*)A->data;
284c1d1b975SXuan Zhou   Mat_Elemental    *b = (Mat_Elemental*)B->data;
2859a9e8502SHong Zhang   Mat_Elemental    *c = (Mat_Elemental*)C->data;
286e6dea9dbSXuan Zhou   PetscElemScalar  one = 1,zero = 0;
287c1d1b975SXuan Zhou 
288c1d1b975SXuan Zhou   PetscFunctionBegin;
289aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
290c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
291aae2c449SHong Zhang   }
2929a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
2939a9e8502SHong Zhang   PetscFunctionReturn(0);
2949a9e8502SHong Zhang }
2959a9e8502SHong Zhang 
2969a9e8502SHong Zhang #undef __FUNCT__
2979a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
2989a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
2999a9e8502SHong Zhang {
3009a9e8502SHong Zhang   PetscErrorCode ierr;
3019a9e8502SHong Zhang   Mat            Ce;
3029a9e8502SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm;
3039a9e8502SHong Zhang 
3049a9e8502SHong Zhang   PetscFunctionBegin;
3059a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3069a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3079a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3089a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3099a9e8502SHong Zhang   *C = Ce;
3109a9e8502SHong Zhang   PetscFunctionReturn(0);
3119a9e8502SHong Zhang }
3129a9e8502SHong Zhang 
3139a9e8502SHong Zhang #undef __FUNCT__
3149a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3159a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3169a9e8502SHong Zhang {
3179a9e8502SHong Zhang   PetscErrorCode ierr;
3189a9e8502SHong Zhang 
3199a9e8502SHong Zhang   PetscFunctionBegin;
3209a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3219a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3229a9e8502SHong Zhang   }
3239a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
324c1d1b975SXuan Zhou   PetscFunctionReturn(0);
325c1d1b975SXuan Zhou }
326c1d1b975SXuan Zhou 
327c1d1b975SXuan Zhou #undef __FUNCT__
328df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
329df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
330df311e6cSXuan Zhou {
331df311e6cSXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
332df311e6cSXuan Zhou   Mat_Elemental      *b = (Mat_Elemental*)B->data;
333df311e6cSXuan Zhou   Mat_Elemental      *c = (Mat_Elemental*)C->data;
334e6dea9dbSXuan Zhou   PetscElemScalar    one = 1,zero = 0;
335df311e6cSXuan Zhou 
336df311e6cSXuan Zhou   PetscFunctionBegin;
337df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
338df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
339df311e6cSXuan Zhou   }
340df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
341df311e6cSXuan Zhou   PetscFunctionReturn(0);
342df311e6cSXuan Zhou }
343df311e6cSXuan Zhou 
344df311e6cSXuan Zhou #undef __FUNCT__
345df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
346df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
347df311e6cSXuan Zhou {
348df311e6cSXuan Zhou   PetscErrorCode ierr;
349df311e6cSXuan Zhou   Mat            Ce;
350df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
351df311e6cSXuan Zhou 
352df311e6cSXuan Zhou   PetscFunctionBegin;
353df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
354df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
355df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
356df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
357df311e6cSXuan Zhou   *C = Ce;
358df311e6cSXuan Zhou   PetscFunctionReturn(0);
359df311e6cSXuan Zhou }
360df311e6cSXuan Zhou 
361df311e6cSXuan Zhou #undef __FUNCT__
362df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
363df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
364df311e6cSXuan Zhou {
365df311e6cSXuan Zhou   PetscErrorCode ierr;
366df311e6cSXuan Zhou 
367df311e6cSXuan Zhou   PetscFunctionBegin;
368df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
369df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
370df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
371df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
372df311e6cSXuan Zhou   }
373df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
374df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
375df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
376df311e6cSXuan Zhou   PetscFunctionReturn(0);
377df311e6cSXuan Zhou }
378df311e6cSXuan Zhou 
379df311e6cSXuan Zhou #undef __FUNCT__
38061119200SXuan Zhou #define __FUNCT__ "MatGetDiagonal_Elemental"
381a9d89745SXuan Zhou static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D)
38261119200SXuan Zhou {
383a9d89745SXuan Zhou   PetscInt        i,nrows,ncols,nD,rrank,ridx,crank,cidx;
384a9d89745SXuan Zhou   Mat_Elemental   *a = (Mat_Elemental*)A->data;
38561119200SXuan Zhou   PetscErrorCode  ierr;
386a9d89745SXuan Zhou   PetscElemScalar v;
387a9d89745SXuan Zhou   MPI_Comm        comm=((PetscObject)A)->comm;
38861119200SXuan Zhou 
38961119200SXuan Zhou   PetscFunctionBegin;
390a9d89745SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
391a9d89745SXuan Zhou   nD = nrows>ncols ? ncols : nrows;
392a9d89745SXuan Zhou   for (i=0; i<nD; i++) {
393a9d89745SXuan Zhou     PetscInt erow,ecol;
394a9d89745SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
395a9d89745SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
396a9d89745SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
397a9d89745SXuan Zhou     P2RO(A,1,i,&crank,&cidx);
398a9d89745SXuan Zhou     RO2E(A,1,crank,cidx,&ecol);
399a9d89745SXuan Zhou     if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
400a9d89745SXuan Zhou     v = a->emat->Get(erow,ecol);
4017c8b904fSSatish Balay     ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr);
402ade3cc5eSXuan Zhou   }
403a9d89745SXuan Zhou   ierr = VecAssemblyBegin(D);CHKERRQ(ierr);
404a9d89745SXuan Zhou   ierr = VecAssemblyEnd(D);CHKERRQ(ierr);
40561119200SXuan Zhou   PetscFunctionReturn(0);
40661119200SXuan Zhou }
40761119200SXuan Zhou 
40861119200SXuan Zhou #undef __FUNCT__
409ade3cc5eSXuan Zhou #define __FUNCT__ "MatDiagonalScale_Elemental"
410ade3cc5eSXuan Zhou static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R)
411ade3cc5eSXuan Zhou {
412ade3cc5eSXuan Zhou   Mat_Elemental         *x = (Mat_Elemental*)X->data;
413ade3cc5eSXuan Zhou   const PetscElemScalar *d;
414ade3cc5eSXuan Zhou   PetscErrorCode        ierr;
415ade3cc5eSXuan Zhou 
416ade3cc5eSXuan Zhou   PetscFunctionBegin;
417*0298fd71SBarry Smith   if (L == NULL) {
418ade3cc5eSXuan Zhou     ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
419ade3cc5eSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->cmap->N,1,0,d,X->cmap->n,*x->grid);
420ade3cc5eSXuan Zhou     elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat);
421ade3cc5eSXuan Zhou     ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
422ade3cc5eSXuan Zhou   } else {
423ade3cc5eSXuan Zhou     ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
424ade3cc5eSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->rmap->N,1,0,d,X->rmap->n,*x->grid);
425ade3cc5eSXuan Zhou     elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat);
426ade3cc5eSXuan Zhou     ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
427ade3cc5eSXuan Zhou   }
428ade3cc5eSXuan Zhou   PetscFunctionReturn(0);
429ade3cc5eSXuan Zhou }
430ade3cc5eSXuan Zhou 
431ade3cc5eSXuan Zhou #undef __FUNCT__
4324ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
433e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
43465b78793SXuan Zhou {
43565b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
43665b78793SXuan Zhou 
43765b78793SXuan Zhou   PetscFunctionBegin;
438e6dea9dbSXuan Zhou   elem::Scal((PetscElemScalar)a,*x->emat);
43965b78793SXuan Zhou   PetscFunctionReturn(0);
44065b78793SXuan Zhou }
44165b78793SXuan Zhou 
44265b78793SXuan Zhou #undef __FUNCT__
4434ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
444e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
445e09a3074SHong Zhang {
446e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
447e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
448e09a3074SHong Zhang 
449e09a3074SHong Zhang   PetscFunctionBegin;
450e6dea9dbSXuan Zhou   elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
451e09a3074SHong Zhang   PetscFunctionReturn(0);
452e09a3074SHong Zhang }
453e09a3074SHong Zhang 
454ae844d54SHong Zhang #undef __FUNCT__
455d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
456d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
457d6223691SXuan Zhou {
458d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
459d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
460d6223691SXuan Zhou 
461d6223691SXuan Zhou   PetscFunctionBegin;
462d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
463d6223691SXuan Zhou   PetscFunctionReturn(0);
464d6223691SXuan Zhou }
465d6223691SXuan Zhou 
466d6223691SXuan Zhou #undef __FUNCT__
467df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
468df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
469df311e6cSXuan Zhou {
470df311e6cSXuan Zhou   Mat            Be;
471df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
472df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
473df311e6cSXuan Zhou   PetscErrorCode ierr;
474df311e6cSXuan Zhou 
475df311e6cSXuan Zhou   PetscFunctionBegin;
476df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
477df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
478df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
479df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
480df311e6cSXuan Zhou   *B = Be;
481df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
482df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
483df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
484df311e6cSXuan Zhou   }
485df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
486df311e6cSXuan Zhou   PetscFunctionReturn(0);
487df311e6cSXuan Zhou }
488df311e6cSXuan Zhou 
489df311e6cSXuan Zhou #undef __FUNCT__
490d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
491d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
492d6223691SXuan Zhou {
4935262d616SXuan Zhou   Mat            Be;
4945262d616SXuan Zhou   PetscErrorCode ierr;
4955262d616SXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
4964fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
497d6223691SXuan Zhou 
498d6223691SXuan Zhou   PetscFunctionBegin;
4995cb544a0SHong Zhang   /* Only out-of-place supported */
5005262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
5015262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
5025262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
5035262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
5045262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
5055262d616SXuan Zhou     *B = Be;
5065262d616SXuan Zhou   }
5074fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
5085262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
5095262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
510d6223691SXuan Zhou   PetscFunctionReturn(0);
511d6223691SXuan Zhou }
512d6223691SXuan Zhou 
513d6223691SXuan Zhou #undef __FUNCT__
514dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental"
515dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A)
516dfcb0403SXuan Zhou {
517dfcb0403SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
518dfcb0403SXuan Zhou 
519dfcb0403SXuan Zhou   PetscFunctionBegin;
520dfcb0403SXuan Zhou   elem::Conjugate(*a->emat);
521dfcb0403SXuan Zhou   PetscFunctionReturn(0);
522dfcb0403SXuan Zhou }
523dfcb0403SXuan Zhou 
524dfcb0403SXuan Zhou #undef __FUNCT__
5254a29722dSXuan Zhou #define __FUNCT__ "MatHermitianTranspose_Elemental"
5264a29722dSXuan Zhou static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
5274a29722dSXuan Zhou {
5284a29722dSXuan Zhou   Mat            Be;
5294a29722dSXuan Zhou   PetscErrorCode ierr;
5304a29722dSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
5314a29722dSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
5324a29722dSXuan Zhou 
5334a29722dSXuan Zhou   PetscFunctionBegin;
5345cb544a0SHong Zhang   /* Only out-of-place supported */
5354a29722dSXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
5364a29722dSXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
5374a29722dSXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
5384a29722dSXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
5394a29722dSXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
5404a29722dSXuan Zhou     *B = Be;
5414a29722dSXuan Zhou   }
5424a29722dSXuan Zhou   b = (Mat_Elemental*)Be->data;
5434a29722dSXuan Zhou   elem::Adjoint(*a->emat,*b->emat);
5444a29722dSXuan Zhou   Be->assembled = PETSC_TRUE;
5454a29722dSXuan Zhou   PetscFunctionReturn(0);
5464a29722dSXuan Zhou }
5474a29722dSXuan Zhou 
5484a29722dSXuan Zhou #undef __FUNCT__
5491f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
5501f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
5511f881ff8SXuan Zhou {
5521f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
5531f881ff8SXuan Zhou   PetscErrorCode    ierr;
554df311e6cSXuan Zhou   PetscElemScalar   *x;
5551f881ff8SXuan Zhou 
5561f881ff8SXuan Zhou   PetscFunctionBegin;
55745cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
558e6dea9dbSXuan Zhou   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
559df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
560df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
561fc54b460SXuan Zhou   switch (A->factortype) {
562fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5631f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5644b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
56545cf121fSXuan Zhou       elem::Copy(xer,xe);
566fc54b460SXuan Zhou     } else {
5674b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
56845cf121fSXuan Zhou       elem::Copy(xer,xe);
5691f881ff8SXuan Zhou     }
570fc54b460SXuan Zhou     break;
571fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
572fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
573fc54b460SXuan Zhou     elem::Copy(xer,xe);
574fc54b460SXuan Zhou     break;
575fc54b460SXuan Zhou   default:
5764fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
577fc54b460SXuan Zhou     break;
5781f881ff8SXuan Zhou   }
579e6dea9dbSXuan Zhou   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
5801f881ff8SXuan Zhou   PetscFunctionReturn(0);
5811f881ff8SXuan Zhou }
5821f881ff8SXuan Zhou 
5831f881ff8SXuan Zhou #undef __FUNCT__
584df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
585df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
586df311e6cSXuan Zhou {
587df311e6cSXuan Zhou   PetscErrorCode    ierr;
588df311e6cSXuan Zhou 
589df311e6cSXuan Zhou   PetscFunctionBegin;
590df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5913d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
592df311e6cSXuan Zhou   PetscFunctionReturn(0);
593df311e6cSXuan Zhou }
594df311e6cSXuan Zhou 
595df311e6cSXuan Zhou #undef __FUNCT__
596ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
597ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
598ae844d54SHong Zhang {
5991f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
600d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
6011f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
6021f0e42cfSHong Zhang 
603ae844d54SHong Zhang   PetscFunctionBegin;
604d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
605fc54b460SXuan Zhou   switch (A->factortype) {
606fc54b460SXuan Zhou   case MAT_FACTOR_LU:
607d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
6084b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
609fc54b460SXuan Zhou     } else {
6104b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
611d6223691SXuan Zhou     }
612fc54b460SXuan Zhou     break;
613fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
614fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
615fc54b460SXuan Zhou     break;
616fc54b460SXuan Zhou   default:
6174fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
618fc54b460SXuan Zhou     break;
619fc54b460SXuan Zhou   }
620ae844d54SHong Zhang   PetscFunctionReturn(0);
621ae844d54SHong Zhang }
622ae844d54SHong Zhang 
623ae844d54SHong Zhang #undef __FUNCT__
624ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
625ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
626ae844d54SHong Zhang {
6277c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
6287c920d81SXuan Zhou 
629ae844d54SHong Zhang   PetscFunctionBegin;
630d6223691SXuan Zhou   if (info->dtcol){
6317c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
6321293973dSHong Zhang   } else {
633d6223691SXuan Zhou     elem::LU(*a->emat);
634d6223691SXuan Zhou   }
6351293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
636834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
637ae844d54SHong Zhang   PetscFunctionReturn(0);
638ae844d54SHong Zhang }
639ae844d54SHong Zhang 
640d7c3f9d8SHong Zhang #undef __FUNCT__
641d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
642d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
643d7c3f9d8SHong Zhang {
644d7c3f9d8SHong Zhang   PetscErrorCode ierr;
645d7c3f9d8SHong Zhang 
646d7c3f9d8SHong Zhang   PetscFunctionBegin;
647d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
648d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
649d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
650d7c3f9d8SHong Zhang }
651d7c3f9d8SHong Zhang 
652d7c3f9d8SHong Zhang #undef __FUNCT__
653d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
654d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
655d7c3f9d8SHong Zhang {
656d7c3f9d8SHong Zhang   PetscFunctionBegin;
657d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
658d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
659d7c3f9d8SHong Zhang }
660d7c3f9d8SHong Zhang 
66145cf121fSXuan Zhou #undef __FUNCT__
66245cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
66345cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
66445cf121fSXuan Zhou {
66545cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
666df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
66745cf121fSXuan Zhou 
66845cf121fSXuan Zhou   PetscFunctionBegin;
669c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
670fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
671834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
67245cf121fSXuan Zhou   PetscFunctionReturn(0);
67345cf121fSXuan Zhou }
67445cf121fSXuan Zhou 
67579673f7bSHong Zhang #undef __FUNCT__
67679673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
67779673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
67879673f7bSHong Zhang {
679cb76c1d8SXuan Zhou   PetscErrorCode ierr;
680cb76c1d8SXuan Zhou 
681cb76c1d8SXuan Zhou   PetscFunctionBegin;
682cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
683cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
684cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
68579673f7bSHong Zhang }
686cb76c1d8SXuan Zhou 
68779673f7bSHong Zhang #undef __FUNCT__
68879673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
68979673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
69079673f7bSHong Zhang {
69179673f7bSHong Zhang   PetscFunctionBegin;
69279673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
69379673f7bSHong Zhang   PetscFunctionReturn(0);
69479673f7bSHong Zhang }
69579673f7bSHong Zhang 
69615767789SHong Zhang EXTERN_C_BEGIN
6971293973dSHong Zhang #undef __FUNCT__
69815767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
69915767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
70015767789SHong Zhang {
70115767789SHong Zhang   PetscFunctionBegin;
70215767789SHong Zhang   *type = MATSOLVERELEMENTAL;
70315767789SHong Zhang   PetscFunctionReturn(0);
70415767789SHong Zhang }
70515767789SHong Zhang EXTERN_C_END
70615767789SHong Zhang 
70715767789SHong Zhang EXTERN_C_BEGIN
70815767789SHong Zhang #undef __FUNCT__
70915767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
71015767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
7111293973dSHong Zhang {
7121293973dSHong Zhang   Mat            B;
7131293973dSHong Zhang   PetscErrorCode ierr;
7141293973dSHong Zhang 
7151293973dSHong Zhang   PetscFunctionBegin;
7161293973dSHong Zhang   /* Create the factorization matrix */
7171293973dSHong Zhang   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
7181293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7191293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
7201293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
7211293973dSHong Zhang   B->factortype = ftype;
72215767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
7231293973dSHong Zhang   *F            = B;
7241293973dSHong Zhang   PetscFunctionReturn(0);
7251293973dSHong Zhang }
72615767789SHong Zhang EXTERN_C_END
7271293973dSHong Zhang 
7281f881ff8SXuan Zhou #undef __FUNCT__
7291f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
7301f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
7311f881ff8SXuan Zhou {
7321f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7331f881ff8SXuan Zhou 
7341f881ff8SXuan Zhou   PetscFunctionBegin;
7351f881ff8SXuan Zhou   switch (type){
7361f881ff8SXuan Zhou   case NORM_1:
7371f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
7381f881ff8SXuan Zhou     break;
7391f881ff8SXuan Zhou   case NORM_FROBENIUS:
7401f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
7411f881ff8SXuan Zhou     break;
7421f881ff8SXuan Zhou   case NORM_INFINITY:
7431f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
7441f881ff8SXuan Zhou     break;
7451f881ff8SXuan Zhou   default:
7461f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
7471f881ff8SXuan Zhou   }
7481f881ff8SXuan Zhou   PetscFunctionReturn(0);
7491f881ff8SXuan Zhou }
7501f881ff8SXuan Zhou 
7515262d616SXuan Zhou #undef __FUNCT__
7525262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
7535262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
7545262d616SXuan Zhou {
7555262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7565262d616SXuan Zhou 
7575262d616SXuan Zhou   PetscFunctionBegin;
7585262d616SXuan Zhou   elem::Zero(*a->emat);
7595262d616SXuan Zhou   PetscFunctionReturn(0);
7605262d616SXuan Zhou }
7615262d616SXuan Zhou 
7621293973dSHong Zhang EXTERN_C_BEGIN
763e09a3074SHong Zhang #undef __FUNCT__
764db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
765db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
766db31f6deSJed Brown {
767db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
768db31f6deSJed Brown   PetscErrorCode ierr;
769db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
770db31f6deSJed Brown 
771db31f6deSJed Brown   PetscFunctionBegin;
772db31f6deSJed Brown   if (rows) {
773db31f6deSJed Brown     m = a->emat->LocalHeight();
774db31f6deSJed Brown     shift = a->emat->ColShift();
775db31f6deSJed Brown     stride = a->emat->ColStride();
776db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
777db31f6deSJed Brown     for (i=0; i<m; i++) {
778db31f6deSJed Brown       PetscInt rank,offset;
779db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
780db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
781db31f6deSJed Brown     }
782db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
783db31f6deSJed Brown   }
784db31f6deSJed Brown   if (cols) {
785db31f6deSJed Brown     m = a->emat->LocalWidth();
786db31f6deSJed Brown     shift = a->emat->RowShift();
787db31f6deSJed Brown     stride = a->emat->RowStride();
788db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
789db31f6deSJed Brown     for (i=0; i<m; i++) {
790db31f6deSJed Brown       PetscInt rank,offset;
791db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
792db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
793db31f6deSJed Brown     }
794db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
795db31f6deSJed Brown   }
796db31f6deSJed Brown   PetscFunctionReturn(0);
797db31f6deSJed Brown }
7981293973dSHong Zhang EXTERN_C_END
799db31f6deSJed Brown 
800db31f6deSJed Brown #undef __FUNCT__
8012ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
80219fd82e9SBarry Smith static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B)
803af295397SXuan Zhou {
8042ef0cf24SXuan Zhou   Mat                Bmpi;
805af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
806af295397SXuan Zhou   MPI_Comm           comm=((PetscObject)A)->comm;
8072ef0cf24SXuan Zhou   PetscErrorCode     ierr;
8082ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
809df311e6cSXuan Zhou   PetscElemScalar    v;
810af295397SXuan Zhou 
811af295397SXuan Zhou   PetscFunctionBegin;
812c4ad791aSXuan Zhou   if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) {
813c4ad791aSXuan Zhou     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
814c4ad791aSXuan Zhou   }
815af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
816af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
8172ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
818af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
8192ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
8202ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
8212ef0cf24SXuan Zhou     PetscInt erow,ecol;
8222ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
8232ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
8242ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
8252ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
8262ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
8272ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
8282ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
8292ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
830e6dea9dbSXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
8312ef0cf24SXuan Zhou     }
8322ef0cf24SXuan Zhou   }
833af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
834af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
835c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
836c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
837c4ad791aSXuan Zhou   } else {
838c4ad791aSXuan Zhou     *B = Bmpi;
839c4ad791aSXuan Zhou   }
840af295397SXuan Zhou   PetscFunctionReturn(0);
841af295397SXuan Zhou }
842af295397SXuan Zhou 
843af295397SXuan Zhou #undef __FUNCT__
844db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
845db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
846db31f6deSJed Brown {
847db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
848db31f6deSJed Brown   PetscErrorCode     ierr;
8495e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
8505e9f5b67SHong Zhang   PetscBool          flg;
8515e9f5b67SHong Zhang   MPI_Comm           icomm;
852db31f6deSJed Brown 
853db31f6deSJed Brown   PetscFunctionBegin;
854c1ee1e62SHong Zhang   a->interface->Detach();
855aae2c449SHong Zhang   delete a->interface;
856aae2c449SHong Zhang   delete a->esubmat;
857db31f6deSJed Brown   delete a->emat;
8585e9f5b67SHong Zhang 
859180a43e4SHong Zhang   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
860*0298fd71SBarry Smith   ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr);
8615e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8625e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8635e9f5b67SHong Zhang     delete commgrid->grid;
8645e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8655e9f5b67SHong Zhang   }
8665e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
867*0298fd71SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",NULL);CHKERRQ(ierr);
868*0298fd71SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",NULL);CHKERRQ(ierr);
869*0298fd71SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",NULL);CHKERRQ(ierr);
870db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
871db31f6deSJed Brown   PetscFunctionReturn(0);
872db31f6deSJed Brown }
873db31f6deSJed Brown 
874db31f6deSJed Brown #undef __FUNCT__
875db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
876db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
877db31f6deSJed Brown {
878db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
879db31f6deSJed Brown   PetscErrorCode ierr;
880db31f6deSJed Brown   PetscMPIInt    rsize,csize;
881db31f6deSJed Brown 
882db31f6deSJed Brown   PetscFunctionBegin;
883db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
884db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
885db31f6deSJed Brown 
886db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
887db31f6deSJed Brown   elem::Zero(*a->emat);
888db31f6deSJed Brown 
889db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
890db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
891db31f6deSJed Brown   if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
892db31f6deSJed Brown   a->commsize = rsize;
893db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
894db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
895db31f6deSJed Brown   a->m[0]  = A->rmap->N / rsize + (a->mr[0] != rsize);
896db31f6deSJed Brown   a->m[1]  = A->cmap->N / csize + (a->mr[1] != csize);
897db31f6deSJed Brown   PetscFunctionReturn(0);
898db31f6deSJed Brown }
899db31f6deSJed Brown 
900aae2c449SHong Zhang #undef __FUNCT__
901aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
902aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
903aae2c449SHong Zhang {
904aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
905aae2c449SHong Zhang 
906aae2c449SHong Zhang   PetscFunctionBegin;
907aae2c449SHong Zhang   a->interface->Detach();
908aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
909aae2c449SHong Zhang   PetscFunctionReturn(0);
910aae2c449SHong Zhang }
911aae2c449SHong Zhang 
912aae2c449SHong Zhang #undef __FUNCT__
913aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
914aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
915aae2c449SHong Zhang {
916aae2c449SHong Zhang   PetscFunctionBegin;
917aae2c449SHong Zhang   /* Currently does nothing */
918aae2c449SHong Zhang   PetscFunctionReturn(0);
919aae2c449SHong Zhang }
920aae2c449SHong Zhang 
92140d92e34SHong Zhang /* -------------------------------------------------------------------*/
92240d92e34SHong Zhang static struct _MatOps MatOps_Values = {
92340d92e34SHong Zhang        MatSetValues_Elemental,
92440d92e34SHong Zhang        0,
92540d92e34SHong Zhang        0,
92640d92e34SHong Zhang        MatMult_Elemental,
92740d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
9289426833fSXuan Zhou        MatMultTranspose_Elemental,
929e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
93040d92e34SHong Zhang        MatSolve_Elemental,
931df311e6cSXuan Zhou        MatSolveAdd_Elemental,
93240d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
93340d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
93440d92e34SHong Zhang        MatLUFactor_Elemental,
93540d92e34SHong Zhang        MatCholeskyFactor_Elemental,
93640d92e34SHong Zhang        0,
93740d92e34SHong Zhang        MatTranspose_Elemental,
93840d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
93940d92e34SHong Zhang        0,
94061119200SXuan Zhou        MatGetDiagonal_Elemental,
941ade3cc5eSXuan Zhou        MatDiagonalScale_Elemental,
94240d92e34SHong Zhang        MatNorm_Elemental,
94340d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
94440d92e34SHong Zhang        MatAssemblyEnd_Elemental,
94540d92e34SHong Zhang        0, //MatSetOption_Elemental,
94640d92e34SHong Zhang        MatZeroEntries_Elemental,
94740d92e34SHong Zhang /*24*/ 0,
94840d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
94940d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
95040d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
95140d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
95240d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
95340d92e34SHong Zhang        0,
95440d92e34SHong Zhang        0,
95540d92e34SHong Zhang        0,
95640d92e34SHong Zhang        0,
957df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
95840d92e34SHong Zhang        0,
95940d92e34SHong Zhang        0,
96040d92e34SHong Zhang        0,
96140d92e34SHong Zhang        0,
96240d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
96340d92e34SHong Zhang        0,
96440d92e34SHong Zhang        0,
96540d92e34SHong Zhang        0,
96640d92e34SHong Zhang        MatCopy_Elemental,
96740d92e34SHong Zhang /*44*/ 0,
96840d92e34SHong Zhang        MatScale_Elemental,
96940d92e34SHong Zhang        0,
97040d92e34SHong Zhang        0,
97140d92e34SHong Zhang        0,
97240d92e34SHong Zhang /*49*/ 0,
97340d92e34SHong Zhang        0,
97440d92e34SHong Zhang        0,
97540d92e34SHong Zhang        0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang /*54*/ 0,
97840d92e34SHong Zhang        0,
97940d92e34SHong Zhang        0,
98040d92e34SHong Zhang        0,
98140d92e34SHong Zhang        0,
98240d92e34SHong Zhang /*59*/ 0,
98340d92e34SHong Zhang        MatDestroy_Elemental,
98440d92e34SHong Zhang        MatView_Elemental,
98540d92e34SHong Zhang        0,
98640d92e34SHong Zhang        0,
98740d92e34SHong Zhang /*64*/ 0,
98840d92e34SHong Zhang        0,
98940d92e34SHong Zhang        0,
99040d92e34SHong Zhang        0,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang /*69*/ 0,
99340d92e34SHong Zhang        0,
9942ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
99540d92e34SHong Zhang        0,
99640d92e34SHong Zhang        0,
99740d92e34SHong Zhang /*74*/ 0,
99840d92e34SHong Zhang        0,
99940d92e34SHong Zhang        0,
100040d92e34SHong Zhang        0,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang /*79*/ 0,
100340d92e34SHong Zhang        0,
100440d92e34SHong Zhang        0,
100540d92e34SHong Zhang        0,
100640d92e34SHong Zhang        0,
100740d92e34SHong Zhang /*84*/ 0,
100840d92e34SHong Zhang        0,
100940d92e34SHong Zhang        0,
101040d92e34SHong Zhang        0,
101140d92e34SHong Zhang        0,
101240d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
101340d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
101440d92e34SHong Zhang        MatMatMultNumeric_Elemental,
101540d92e34SHong Zhang        0,
101640d92e34SHong Zhang        0,
101740d92e34SHong Zhang /*94*/ 0,
1018df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
1019df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
1020df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
102140d92e34SHong Zhang        0,
102240d92e34SHong Zhang /*99*/ 0,
102340d92e34SHong Zhang        0,
102440d92e34SHong Zhang        0,
1025dfcb0403SXuan Zhou        MatConjugate_Elemental,
102640d92e34SHong Zhang        0,
102740d92e34SHong Zhang /*104*/0,
102840d92e34SHong Zhang        0,
102940d92e34SHong Zhang        0,
103040d92e34SHong Zhang        0,
103140d92e34SHong Zhang        0,
103240d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
103340d92e34SHong Zhang        0,
103440d92e34SHong Zhang        0,
103540d92e34SHong Zhang        0,
103640d92e34SHong Zhang        0,
103740d92e34SHong Zhang /*114*/0,
103840d92e34SHong Zhang        0,
103940d92e34SHong Zhang        0,
104040d92e34SHong Zhang        0,
104140d92e34SHong Zhang        0,
104240d92e34SHong Zhang /*119*/0,
10434a29722dSXuan Zhou        MatHermitianTranspose_Elemental,
104440d92e34SHong Zhang        0,
104540d92e34SHong Zhang        0,
104640d92e34SHong Zhang        0,
104740d92e34SHong Zhang /*124*/0,
104840d92e34SHong Zhang        0,
104940d92e34SHong Zhang        0,
105040d92e34SHong Zhang        0,
105140d92e34SHong Zhang        0,
105240d92e34SHong Zhang /*129*/0,
105340d92e34SHong Zhang        0,
105440d92e34SHong Zhang        0,
105540d92e34SHong Zhang        0,
105640d92e34SHong Zhang        0,
105740d92e34SHong Zhang /*134*/0,
105840d92e34SHong Zhang        0,
105940d92e34SHong Zhang        0,
106040d92e34SHong Zhang        0,
106140d92e34SHong Zhang        0
106240d92e34SHong Zhang };
106340d92e34SHong Zhang 
1064ed36708cSHong Zhang /*MC
1065ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1066ed36708cSHong Zhang 
1067ed36708cSHong Zhang    Options Database Keys:
1068ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
10695cb544a0SHong Zhang . -mat_elemental_grid_height - sets Grid Height
10705cb544a0SHong Zhang . -mat_elemental_grid_width - sets Grid Width
1071ed36708cSHong Zhang 
1072ed36708cSHong Zhang   Level: beginner
1073ed36708cSHong Zhang 
10745cb544a0SHong Zhang .seealso: MATDENSE
1075ed36708cSHong Zhang M*/
10764a29722dSXuan Zhou 
1077db31f6deSJed Brown #undef __FUNCT__
1078db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1079db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A)
1080db31f6deSJed Brown {
1081db31f6deSJed Brown   Mat_Elemental      *a;
1082db31f6deSJed Brown   PetscErrorCode     ierr;
1083ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10845e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10855e9f5b67SHong Zhang   MPI_Comm           icomm;
1086ed667823SXuan Zhou   PetscInt           optv1,optv2;
1087db31f6deSJed Brown 
1088db31f6deSJed Brown   PetscFunctionBegin;
1089*0298fd71SBarry Smith   ierr = PetscElementalInitializePackage(NULL);CHKERRQ(ierr);
109040d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
109140d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1092db31f6deSJed Brown 
1093db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1094db31f6deSJed Brown   A->data = (void*)a;
1095db31f6deSJed Brown 
1096db31f6deSJed Brown   /* Set up the elemental matrix */
1097db31f6deSJed Brown   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
10985e9f5b67SHong Zhang 
10995e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
11005e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1101180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
11025e9f5b67SHong Zhang   }
1103*0298fd71SBarry Smith   ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr);
11045e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
11055e9f5b67SHong Zhang   if (!flg) {
11065e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
11075cb544a0SHong Zhang 
11085cb544a0SHong Zhang     ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
11095cb544a0SHong Zhang     /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */
11102ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
11112ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1112ed667823SXuan Zhou     if (flg1 || flg2) {
1113ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
11142ef0cf24SXuan Zhou         SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1115ed667823SXuan Zhou       }
11162adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */
11172ef0cf24SXuan Zhou     } else {
11182adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */
1119ed667823SXuan Zhou     }
11205e9f5b67SHong Zhang     commgrid->grid_refct = 1;
11215e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
11225cb544a0SHong Zhang     PetscOptionsEnd();
11235e9f5b67SHong Zhang   } else {
11245e9f5b67SHong Zhang     commgrid->grid_refct++;
11255e9f5b67SHong Zhang   }
11265e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
11275e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1128df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1129df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1130df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
11317c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1132db31f6deSJed Brown 
1133db31f6deSJed Brown   /* build cache for off array entries formed */
1134aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1135bafd5131SHong Zhang 
1136db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
113715767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1138db31f6deSJed Brown 
1139db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1140db31f6deSJed Brown   PetscFunctionReturn(0);
1141db31f6deSJed Brown }
11424a29722dSXuan Zhou 
1143