xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 1576778905152c0ce298ae0d34e7b8a4436c6ffd)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
17db31f6deSJed Brown .  path - the dynamic library path or PETSC_NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57ed667823SXuan Zhou /* Sets Elemental options from the options database */
58ed667823SXuan Zhou #undef __FUNCT__
59ed667823SXuan Zhou #define __FUNCT__ "PetscSetElementalFromOptions"
60ed667823SXuan Zhou PetscErrorCode PetscSetElementalFromOptions(Mat A)
61ed667823SXuan Zhou {
62ed667823SXuan Zhou   //Mat_Elemental  *a = (Mat_Elemental*)A->data;
63ed667823SXuan Zhou   PetscErrorCode ierr;
64ed667823SXuan Zhou   //PetscInt       optv1,optv2;
65ed667823SXuan Zhou   //PetscBool      flg;
66ed667823SXuan Zhou 
67ed667823SXuan Zhou   PetscFunctionBegin;
68ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
69ed667823SXuan Zhou   //ierr = PetscOptionsInt("-mat_elemental_grid_height","Gird Height","None",(*a->emat).Grid().Height(),&optv1,&flg);CHKERRQ(ierr);
70ed667823SXuan Zhou   //ierr = PetscOptionsInt("-mat_elemental_grid_width","Gird Width","None",(*a->emat).Grid().Width(),&optv2,&flg);CHKERRQ(ierr);
71ed667823SXuan Zhou   //if (flg) (*a->emat).Grid().ResizeTo(optv1,optv2);
72ed667823SXuan Zhou   // ierr = PetscOptionsInt("-mat_mumps_icntl_2","ICNTL(2): output stream for diagnostic printing, statistics, and warning","None",mumps->id.ICNTL(2),&icntl,&flg);CHKERRQ(ierr);
73ed667823SXuan Zhou   // if (flg) mumps->id.ICNTL(2) = icntl;
74ed667823SXuan Zhou   // ierr = PetscOptionsInt("-mat_mumps_icntl_3","ICNTL(3): output stream for global information, collected on the host","None",mumps->id.ICNTL(3),&icntl,&flg);CHKERRQ(ierr);
75ed667823SXuan Zhou   // if (flg) mumps->id.ICNTL(3) = icntl;
76ed667823SXuan Zhou 
77ed667823SXuan Zhou 
78ed667823SXuan Zhou   PetscOptionsEnd();
79ed667823SXuan Zhou   PetscFunctionReturn(0);
80ed667823SXuan Zhou }
81ed667823SXuan Zhou 
82db31f6deSJed Brown #undef __FUNCT__
83db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
84db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
85db31f6deSJed Brown {
86db31f6deSJed Brown   PetscErrorCode ierr;
87db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
88db31f6deSJed Brown   PetscBool      iascii;
89db31f6deSJed Brown 
90db31f6deSJed Brown   PetscFunctionBegin;
91db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
92db31f6deSJed Brown   if (iascii) {
93db31f6deSJed Brown     PetscViewerFormat format;
94db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
95db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
9679673f7bSHong Zhang       /* call elemental viewing function */
972d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
98ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
99ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
1004fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10179673f7bSHong Zhang         /* call elemental viewing function */
10280622e0cSXuan Zhou         ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr);
1034fe7bbcaSHong Zhang       }
10479673f7bSHong Zhang 
105db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
106db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
107db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
108db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
109db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
110834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
111d2daa67eSHong Zhang         Mat Aaij;
1120022473aSHong Zhang         ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
1130022473aSHong Zhang         ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
114d2daa67eSHong Zhang         ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
1150022473aSHong Zhang         ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
116834d3fecSHong Zhang       }
117db31f6deSJed Brown     } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format");
118d2daa67eSHong Zhang   } else {
119d2daa67eSHong Zhang     /* convert to aij/mpidense format and call MatView() */
120d2daa67eSHong Zhang     Mat Aaij;
121d2daa67eSHong Zhang     ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
122d2daa67eSHong Zhang     ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
123d2daa67eSHong Zhang     ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
124d2daa67eSHong Zhang     ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
125d2daa67eSHong Zhang   }
126db31f6deSJed Brown   PetscFunctionReturn(0);
127db31f6deSJed Brown }
128db31f6deSJed Brown 
129db31f6deSJed Brown #undef __FUNCT__
130180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
131*15767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
132180a43e4SHong Zhang {
133*15767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
134*15767789SHong Zhang   PetscMPIInt    rank;
135*15767789SHong Zhang 
136180a43e4SHong Zhang   PetscFunctionBegin;
137*15767789SHong Zhang   MPI_Comm_rank(((PetscObject)A)->comm,&rank);
138*15767789SHong Zhang 
139*15767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
140*15767789SHong Zhang   info->block_size     = 1.0; /* ? */
141*15767789SHong Zhang 
142*15767789SHong Zhang   if (flag == MAT_LOCAL) {
143*15767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
144*15767789SHong Zhang     info->nz_used        = info->nz_allocated;
145*15767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
146*15767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
147*15767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
148*15767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
149*15767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
150*15767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
151*15767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
152*15767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
153*15767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
154*15767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
155*15767789SHong Zhang   }
156*15767789SHong Zhang 
157*15767789SHong Zhang   info->nz_unneeded       = 0.0;
158*15767789SHong Zhang   info->assemblies        = (double)A->num_ass;
159*15767789SHong Zhang   info->mallocs           = 0;
160*15767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
161*15767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
162*15767789SHong Zhang   info->fill_ratio_needed = 0;
163*15767789SHong Zhang   info->factor_mallocs    = 0;
164180a43e4SHong Zhang   PetscFunctionReturn(0);
165180a43e4SHong Zhang }
166180a43e4SHong Zhang 
167180a43e4SHong Zhang #undef __FUNCT__
168db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
169df311e6cSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscElemScalar *vals,InsertMode imode)
170db31f6deSJed Brown {
171db31f6deSJed Brown   PetscErrorCode ierr;
172db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
173db31f6deSJed Brown   PetscMPIInt    rank;
174db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
175db31f6deSJed Brown 
176db31f6deSJed Brown   PetscFunctionBegin;
177db31f6deSJed Brown   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
178db31f6deSJed Brown 
179db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
180db31f6deSJed Brown   for (i=0; i<nr; i++) {
181db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
182db31f6deSJed Brown     if (rows[i] < 0) continue;
183db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
184db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
185db31f6deSJed Brown     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation");
186db31f6deSJed Brown     for (j=0; j<nc; j++) {
187db31f6deSJed Brown       if (cols[j] < 0) continue;
188db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
189db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
190db31f6deSJed Brown       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation");
191aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
192aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
193aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
194aae2c449SHong Zhang         a->esubmat->Set(0,0, vals[i*nc+j]);
195aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
196aae2c449SHong Zhang         continue;
197ed36708cSHong Zhang       }
198db31f6deSJed Brown       elrow = erow / grid.MCSize();
199db31f6deSJed Brown       elcol = ecol / grid.MRSize();
200db31f6deSJed Brown       switch (imode) {
201db31f6deSJed Brown       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,vals[i*nc+j]); break;
202db31f6deSJed Brown       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,vals[i*nc+j]); break;
203db31f6deSJed Brown       default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
204db31f6deSJed Brown       }
205db31f6deSJed Brown     }
206db31f6deSJed Brown   }
207db31f6deSJed Brown   PetscFunctionReturn(0);
208db31f6deSJed Brown }
209db31f6deSJed Brown 
210db31f6deSJed Brown #undef __FUNCT__
211db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
212db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
213db31f6deSJed Brown {
214db31f6deSJed Brown   Mat_Elemental     *a = (Mat_Elemental*)A->data;
215db31f6deSJed Brown   PetscErrorCode    ierr;
2163d7f40dbSXuan Zhou   const PetscScalar *x;
2173d7f40dbSXuan Zhou   PetscScalar       *y;
218df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
219db31f6deSJed Brown 
220db31f6deSJed Brown   PetscFunctionBegin;
221db31f6deSJed Brown   ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr);
222db31f6deSJed Brown   ierr = VecGetArray(Y,&y);CHKERRQ(ierr);
223db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
224df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
225df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
226db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
227db31f6deSJed Brown   }
228db31f6deSJed Brown   ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr);
229db31f6deSJed Brown   ierr = VecRestoreArray(Y,&y);CHKERRQ(ierr);
230db31f6deSJed Brown   PetscFunctionReturn(0);
231db31f6deSJed Brown }
232db31f6deSJed Brown 
233db31f6deSJed Brown #undef __FUNCT__
2349426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2359426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2369426833fSXuan Zhou {
2379426833fSXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
2389426833fSXuan Zhou   PetscErrorCode    ierr;
239df311e6cSXuan Zhou   const PetscElemScalar *x;
240df311e6cSXuan Zhou   PetscElemScalar       *y;
2419426833fSXuan Zhou   PetscScalar       one = 1,zero = 0;
2429426833fSXuan Zhou 
2439426833fSXuan Zhou   PetscFunctionBegin;
2449426833fSXuan Zhou   ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr);
2459426833fSXuan Zhou   ierr = VecGetArray(Y,&y);CHKERRQ(ierr);
2469426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
247df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
248df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2499426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2509426833fSXuan Zhou   }
2519426833fSXuan Zhou   ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr);
2529426833fSXuan Zhou   ierr = VecRestoreArray(Y,&y);CHKERRQ(ierr);
2539426833fSXuan Zhou   PetscFunctionReturn(0);
2549426833fSXuan Zhou }
2559426833fSXuan Zhou 
2569426833fSXuan Zhou #undef __FUNCT__
257db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
258db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
259db31f6deSJed Brown {
260db31f6deSJed Brown   Mat_Elemental     *a = (Mat_Elemental*)A->data;
261db31f6deSJed Brown   PetscErrorCode    ierr;
262df311e6cSXuan Zhou   const PetscElemScalar *x;
263df311e6cSXuan Zhou   PetscElemScalar       *z;
2643d7f40dbSXuan Zhou   PetscScalar       one = 1;
265db31f6deSJed Brown 
266db31f6deSJed Brown   PetscFunctionBegin;
267db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
268db31f6deSJed Brown   ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr);
269db31f6deSJed Brown   ierr = VecGetArray(Z,&z);CHKERRQ(ierr);
270db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
271df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
272df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
273db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
274db31f6deSJed Brown   }
275db31f6deSJed Brown   ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr);
276db31f6deSJed Brown   ierr = VecRestoreArray(Z,&z);CHKERRQ(ierr);
277db31f6deSJed Brown   PetscFunctionReturn(0);
278db31f6deSJed Brown }
279db31f6deSJed Brown 
280db31f6deSJed Brown #undef __FUNCT__
281e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
282e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
283e883f9d5SXuan Zhou {
284e883f9d5SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
285e883f9d5SXuan Zhou   PetscErrorCode    ierr;
286df311e6cSXuan Zhou   const PetscElemScalar *x;
287df311e6cSXuan Zhou   PetscElemScalar       *z;
2883d7f40dbSXuan Zhou   PetscScalar       one = 1;
289e883f9d5SXuan Zhou 
290e883f9d5SXuan Zhou   PetscFunctionBegin;
291e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
292e883f9d5SXuan Zhou   ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr);
293e883f9d5SXuan Zhou   ierr = VecGetArray(Z,&z);CHKERRQ(ierr);
294e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
295df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
296df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
297e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
298e883f9d5SXuan Zhou   }
299e883f9d5SXuan Zhou   ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr);
300e883f9d5SXuan Zhou   ierr = VecRestoreArray(Z,&z);CHKERRQ(ierr);
301e883f9d5SXuan Zhou   PetscFunctionReturn(0);
302e883f9d5SXuan Zhou }
303e883f9d5SXuan Zhou 
304e883f9d5SXuan Zhou #undef __FUNCT__
3059a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
3069a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
307c1d1b975SXuan Zhou {
308c1d1b975SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
309c1d1b975SXuan Zhou   Mat_Elemental  *b = (Mat_Elemental*)B->data;
3109a9e8502SHong Zhang   Mat_Elemental  *c = (Mat_Elemental*)C->data;
3113d7f40dbSXuan Zhou   PetscScalar    one = 1,zero = 0;
312c1d1b975SXuan Zhou 
313c1d1b975SXuan Zhou   PetscFunctionBegin;
314aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
315c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
316aae2c449SHong Zhang   }
3179a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
3189a9e8502SHong Zhang   PetscFunctionReturn(0);
3199a9e8502SHong Zhang }
3209a9e8502SHong Zhang 
3219a9e8502SHong Zhang #undef __FUNCT__
3229a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
3239a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
3249a9e8502SHong Zhang {
3259a9e8502SHong Zhang   PetscErrorCode ierr;
3269a9e8502SHong Zhang   Mat            Ce;
3279a9e8502SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm;
3289a9e8502SHong Zhang 
3299a9e8502SHong Zhang   PetscFunctionBegin;
3309a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3319a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3329a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3339a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3349a9e8502SHong Zhang   *C = Ce;
3359a9e8502SHong Zhang   PetscFunctionReturn(0);
3369a9e8502SHong Zhang }
3379a9e8502SHong Zhang 
3389a9e8502SHong Zhang #undef __FUNCT__
3399a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3409a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3419a9e8502SHong Zhang {
3429a9e8502SHong Zhang   PetscErrorCode ierr;
3439a9e8502SHong Zhang 
3449a9e8502SHong Zhang   PetscFunctionBegin;
3459a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3469a9e8502SHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3479a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3489a9e8502SHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3499a9e8502SHong Zhang   }
3509a9e8502SHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
3519a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
3529a9e8502SHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
353c1d1b975SXuan Zhou   PetscFunctionReturn(0);
354c1d1b975SXuan Zhou }
355c1d1b975SXuan Zhou 
356c1d1b975SXuan Zhou #undef __FUNCT__
357df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
358df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
359df311e6cSXuan Zhou {
360df311e6cSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
361df311e6cSXuan Zhou   Mat_Elemental  *b = (Mat_Elemental*)B->data;
362df311e6cSXuan Zhou   Mat_Elemental  *c = (Mat_Elemental*)C->data;
3633d7f40dbSXuan Zhou   PetscScalar    one = 1,zero = 0;
364df311e6cSXuan Zhou 
365df311e6cSXuan Zhou   PetscFunctionBegin;
366df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
367df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
368df311e6cSXuan Zhou   }
369df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
370df311e6cSXuan Zhou   PetscFunctionReturn(0);
371df311e6cSXuan Zhou }
372df311e6cSXuan Zhou 
373df311e6cSXuan Zhou #undef __FUNCT__
374df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
375df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
376df311e6cSXuan Zhou {
377df311e6cSXuan Zhou   PetscErrorCode ierr;
378df311e6cSXuan Zhou   Mat            Ce;
379df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
380df311e6cSXuan Zhou 
381df311e6cSXuan Zhou   PetscFunctionBegin;
382df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
383df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
384df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
385df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
386df311e6cSXuan Zhou   *C = Ce;
387df311e6cSXuan Zhou   PetscFunctionReturn(0);
388df311e6cSXuan Zhou }
389df311e6cSXuan Zhou 
390df311e6cSXuan Zhou #undef __FUNCT__
391df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
392df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
393df311e6cSXuan Zhou {
394df311e6cSXuan Zhou   PetscErrorCode ierr;
395df311e6cSXuan Zhou 
396df311e6cSXuan Zhou   PetscFunctionBegin;
397df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
398df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
399df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
400df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
401df311e6cSXuan Zhou   }
402df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
403df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
404df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
405df311e6cSXuan Zhou   PetscFunctionReturn(0);
406df311e6cSXuan Zhou }
407df311e6cSXuan Zhou 
408df311e6cSXuan Zhou #undef __FUNCT__
4094ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
410df311e6cSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscElemScalar a)
41165b78793SXuan Zhou {
41265b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
41365b78793SXuan Zhou 
41465b78793SXuan Zhou   PetscFunctionBegin;
4154ee44ac6SXuan Zhou   elem::Scal(a,*x->emat);
41665b78793SXuan Zhou   PetscFunctionReturn(0);
41765b78793SXuan Zhou }
41865b78793SXuan Zhou 
41965b78793SXuan Zhou #undef __FUNCT__
4204ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
421df311e6cSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscElemScalar a,Mat X,MatStructure str)
422e09a3074SHong Zhang {
423e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
424e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
425e09a3074SHong Zhang 
426e09a3074SHong Zhang   PetscFunctionBegin;
4274ee44ac6SXuan Zhou   elem::Axpy(a,*x->emat,*y->emat);
428e09a3074SHong Zhang   PetscFunctionReturn(0);
429e09a3074SHong Zhang }
430e09a3074SHong Zhang 
431ae844d54SHong Zhang #undef __FUNCT__
432d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
433d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
434d6223691SXuan Zhou {
435d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
436d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
437d6223691SXuan Zhou 
438d6223691SXuan Zhou   PetscFunctionBegin;
439d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
440d6223691SXuan Zhou   PetscFunctionReturn(0);
441d6223691SXuan Zhou }
442d6223691SXuan Zhou 
443d6223691SXuan Zhou #undef __FUNCT__
444df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
445df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
446df311e6cSXuan Zhou {
447df311e6cSXuan Zhou   Mat            Be;
448df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
449df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
450df311e6cSXuan Zhou   PetscErrorCode ierr;
451df311e6cSXuan Zhou 
452df311e6cSXuan Zhou   PetscFunctionBegin;
453df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
454df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
455df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
456df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
457df311e6cSXuan Zhou   *B = Be;
458df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
459df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
460df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
461df311e6cSXuan Zhou   }
462df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
463df311e6cSXuan Zhou   PetscFunctionReturn(0);
464df311e6cSXuan Zhou }
465df311e6cSXuan Zhou 
466df311e6cSXuan Zhou #undef __FUNCT__
467d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
468d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
469d6223691SXuan Zhou {
4703512f328SXuan Zhou   /* Only out-of-place supported */
4715262d616SXuan Zhou   Mat            Be;
4725262d616SXuan Zhou   PetscErrorCode ierr;
4735262d616SXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
4744fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
475d6223691SXuan Zhou 
476d6223691SXuan Zhou   PetscFunctionBegin;
4775262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
4785262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
4795262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
4805262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
4815262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
4825262d616SXuan Zhou     *B = Be;
4835262d616SXuan Zhou   }
4844fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
4855262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
4865262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
487d6223691SXuan Zhou   PetscFunctionReturn(0);
488d6223691SXuan Zhou }
489d6223691SXuan Zhou 
490d6223691SXuan Zhou #undef __FUNCT__
4911f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
4921f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
4931f881ff8SXuan Zhou {
4941f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
4951f881ff8SXuan Zhou   PetscErrorCode    ierr;
496df311e6cSXuan Zhou   PetscElemScalar       *x;
4971f881ff8SXuan Zhou 
4981f881ff8SXuan Zhou   PetscFunctionBegin;
49945cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
5001f881ff8SXuan Zhou   ierr = VecGetArray(X,&x);CHKERRQ(ierr);
501df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
502df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
503fc54b460SXuan Zhou   switch (A->factortype) {
504fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5051f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5064b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
50745cf121fSXuan Zhou       elem::Copy(xer,xe);
508fc54b460SXuan Zhou     } else {
5094b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
51045cf121fSXuan Zhou       elem::Copy(xer,xe);
5111f881ff8SXuan Zhou     }
512fc54b460SXuan Zhou     break;
513fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
514fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
515fc54b460SXuan Zhou     elem::Copy(xer,xe);
516fc54b460SXuan Zhou     break;
517fc54b460SXuan Zhou   default:
5184fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
519fc54b460SXuan Zhou     break;
5201f881ff8SXuan Zhou   }
5211f881ff8SXuan Zhou   ierr = VecRestoreArray(X,&x);CHKERRQ(ierr);
5221f881ff8SXuan Zhou   PetscFunctionReturn(0);
5231f881ff8SXuan Zhou }
5241f881ff8SXuan Zhou 
5251f881ff8SXuan Zhou #undef __FUNCT__
526df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
527df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
528df311e6cSXuan Zhou {
529df311e6cSXuan Zhou   PetscErrorCode    ierr;
530df311e6cSXuan Zhou 
531df311e6cSXuan Zhou   PetscFunctionBegin;
532df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5333d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
534df311e6cSXuan Zhou   PetscFunctionReturn(0);
535df311e6cSXuan Zhou }
536df311e6cSXuan Zhou 
537df311e6cSXuan Zhou #undef __FUNCT__
538ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
539ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
540ae844d54SHong Zhang {
5411f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
542d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
5431f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
5441f0e42cfSHong Zhang 
545ae844d54SHong Zhang   PetscFunctionBegin;
546d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
547fc54b460SXuan Zhou   switch (A->factortype) {
548fc54b460SXuan Zhou   case MAT_FACTOR_LU:
549d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5504b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
551fc54b460SXuan Zhou     } else {
5524b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
553d6223691SXuan Zhou     }
554fc54b460SXuan Zhou     break;
555fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
556fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
557fc54b460SXuan Zhou     break;
558fc54b460SXuan Zhou   default:
5594fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
560fc54b460SXuan Zhou     break;
561fc54b460SXuan Zhou   }
562ae844d54SHong Zhang   PetscFunctionReturn(0);
563ae844d54SHong Zhang }
564ae844d54SHong Zhang 
565ae844d54SHong Zhang #undef __FUNCT__
566ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
567ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
568ae844d54SHong Zhang {
5697c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
5707c920d81SXuan Zhou 
571ae844d54SHong Zhang   PetscFunctionBegin;
572d6223691SXuan Zhou   if (info->dtcol){
5737c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
5741293973dSHong Zhang   } else {
575d6223691SXuan Zhou     elem::LU(*a->emat);
576d6223691SXuan Zhou   }
5771293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
578834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
579ae844d54SHong Zhang   PetscFunctionReturn(0);
580ae844d54SHong Zhang }
581ae844d54SHong Zhang 
582d7c3f9d8SHong Zhang #undef __FUNCT__
583d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
584d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
585d7c3f9d8SHong Zhang {
586d7c3f9d8SHong Zhang   PetscErrorCode ierr;
587d7c3f9d8SHong Zhang 
588d7c3f9d8SHong Zhang   PetscFunctionBegin;
589d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
590d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
591d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
592d7c3f9d8SHong Zhang }
593d7c3f9d8SHong Zhang 
594d7c3f9d8SHong Zhang #undef __FUNCT__
595d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
596d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
597d7c3f9d8SHong Zhang {
598d7c3f9d8SHong Zhang   PetscFunctionBegin;
599d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
600d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
601d7c3f9d8SHong Zhang }
602d7c3f9d8SHong Zhang 
60345cf121fSXuan Zhou #undef __FUNCT__
60445cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
60545cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
60645cf121fSXuan Zhou {
60745cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
608df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
60945cf121fSXuan Zhou 
61045cf121fSXuan Zhou   PetscFunctionBegin;
611c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
612da52215dSXuan Zhou   // if (info->dtcol){
613da52215dSXuan Zhou   //   /* A = U^T * U for SPD Matrix A */
614da52215dSXuan Zhou   //   printf("Cholesky Factorization for SPD Matrices...\n");
615da52215dSXuan Zhou   //   elem::Cholesky(elem::UPPER,*a->emat);
616da52215dSXuan Zhou   // } else {
617da52215dSXuan Zhou   //   /* A = U^T * D * U * for Symmetric Matrix A */
618da52215dSXuan Zhou   //   printf("LDL^T Factorization for Symmetric Matrices.\n");
619da52215dSXuan Zhou   //   printf("This routine does not pivot. Use with caution.\n");
620da52215dSXuan Zhou   //   elem::LDLT(*a->emat,d);
621da52215dSXuan Zhou   // }
622fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
623834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
62445cf121fSXuan Zhou   PetscFunctionReturn(0);
62545cf121fSXuan Zhou }
62645cf121fSXuan Zhou 
62779673f7bSHong Zhang #undef __FUNCT__
62879673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
62979673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
63079673f7bSHong Zhang {
631cb76c1d8SXuan Zhou   PetscErrorCode ierr;
632cb76c1d8SXuan Zhou 
633cb76c1d8SXuan Zhou   PetscFunctionBegin;
634cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
635cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
636cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
63779673f7bSHong Zhang }
638cb76c1d8SXuan Zhou 
63979673f7bSHong Zhang #undef __FUNCT__
64079673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
64179673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
64279673f7bSHong Zhang {
64379673f7bSHong Zhang   PetscFunctionBegin;
64479673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
64579673f7bSHong Zhang   PetscFunctionReturn(0);
64679673f7bSHong Zhang }
64779673f7bSHong Zhang 
648*15767789SHong Zhang EXTERN_C_BEGIN
6491293973dSHong Zhang #undef __FUNCT__
650*15767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
651*15767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
652*15767789SHong Zhang {
653*15767789SHong Zhang   PetscFunctionBegin;
654*15767789SHong Zhang   *type = MATSOLVERELEMENTAL;
655*15767789SHong Zhang   PetscFunctionReturn(0);
656*15767789SHong Zhang }
657*15767789SHong Zhang EXTERN_C_END
658*15767789SHong Zhang 
659*15767789SHong Zhang EXTERN_C_BEGIN
660*15767789SHong Zhang #undef __FUNCT__
661*15767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
662*15767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
6631293973dSHong Zhang {
6641293973dSHong Zhang   Mat            B;
6651293973dSHong Zhang   PetscErrorCode ierr;
6661293973dSHong Zhang 
6671293973dSHong Zhang   PetscFunctionBegin;
6681293973dSHong Zhang   /* Create the factorization matrix */
6691293973dSHong Zhang   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
6701293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
6711293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
6721293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
6731293973dSHong Zhang   B->factortype = ftype;
674*15767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
6751293973dSHong Zhang   *F            = B;
6761293973dSHong Zhang   PetscFunctionReturn(0);
6771293973dSHong Zhang }
678*15767789SHong Zhang EXTERN_C_END
6791293973dSHong Zhang 
6801f881ff8SXuan Zhou #undef __FUNCT__
6811f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
6821f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
6831f881ff8SXuan Zhou {
6841f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
6851f881ff8SXuan Zhou 
6861f881ff8SXuan Zhou   PetscFunctionBegin;
6871f881ff8SXuan Zhou   switch (type){
6881f881ff8SXuan Zhou   case NORM_1:
6891f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
6901f881ff8SXuan Zhou     break;
6911f881ff8SXuan Zhou   case NORM_FROBENIUS:
6921f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
6931f881ff8SXuan Zhou     break;
6941f881ff8SXuan Zhou   case NORM_INFINITY:
6951f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
6961f881ff8SXuan Zhou     break;
6971f881ff8SXuan Zhou   default:
6981f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
6991f881ff8SXuan Zhou   }
7001f881ff8SXuan Zhou   PetscFunctionReturn(0);
7011f881ff8SXuan Zhou }
7021f881ff8SXuan Zhou 
7035262d616SXuan Zhou #undef __FUNCT__
7045262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
7055262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
7065262d616SXuan Zhou {
7075262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7085262d616SXuan Zhou 
7095262d616SXuan Zhou   PetscFunctionBegin;
7105262d616SXuan Zhou   elem::Zero(*a->emat);
7115262d616SXuan Zhou   PetscFunctionReturn(0);
7125262d616SXuan Zhou }
7135262d616SXuan Zhou 
7141293973dSHong Zhang EXTERN_C_BEGIN
715e09a3074SHong Zhang #undef __FUNCT__
716db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
717db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
718db31f6deSJed Brown {
719db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
720db31f6deSJed Brown   PetscErrorCode ierr;
721db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
722db31f6deSJed Brown 
723db31f6deSJed Brown   PetscFunctionBegin;
724db31f6deSJed Brown   if (rows) {
725db31f6deSJed Brown     m = a->emat->LocalHeight();
726db31f6deSJed Brown     shift = a->emat->ColShift();
727db31f6deSJed Brown     stride = a->emat->ColStride();
728db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
729db31f6deSJed Brown     for (i=0; i<m; i++) {
730db31f6deSJed Brown       PetscInt rank,offset;
731db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
732db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
733db31f6deSJed Brown     }
734db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
735db31f6deSJed Brown   }
736db31f6deSJed Brown   if (cols) {
737db31f6deSJed Brown     m = a->emat->LocalWidth();
738db31f6deSJed Brown     shift = a->emat->RowShift();
739db31f6deSJed Brown     stride = a->emat->RowStride();
740db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
741db31f6deSJed Brown     for (i=0; i<m; i++) {
742db31f6deSJed Brown       PetscInt rank,offset;
743db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
744db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
745db31f6deSJed Brown     }
746db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
747db31f6deSJed Brown   }
748db31f6deSJed Brown   PetscFunctionReturn(0);
749db31f6deSJed Brown }
7501293973dSHong Zhang EXTERN_C_END
751db31f6deSJed Brown 
752db31f6deSJed Brown #undef __FUNCT__
7532ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
7542ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B)
755af295397SXuan Zhou {
7562ef0cf24SXuan Zhou   Mat                Bmpi;
757af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
758af295397SXuan Zhou   MPI_Comm           comm=((PetscObject)A)->comm;
7592ef0cf24SXuan Zhou   PetscErrorCode     ierr;
7602ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
761df311e6cSXuan Zhou   PetscElemScalar        v;
762af295397SXuan Zhou 
763af295397SXuan Zhou   PetscFunctionBegin;
764c4ad791aSXuan Zhou   if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) {
765c4ad791aSXuan Zhou     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
766c4ad791aSXuan Zhou   }
767af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
768af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7692ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
770af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
7712ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
7722ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
7732ef0cf24SXuan Zhou     PetscInt erow,ecol;
7742ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
7752ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
7762ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
7772ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
7782ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
7792ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
7802ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
7812ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
7822ef0cf24SXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,&v,INSERT_VALUES);CHKERRQ(ierr);
7832ef0cf24SXuan Zhou     }
7842ef0cf24SXuan Zhou   }
785af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
786af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
787c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
788c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
789c4ad791aSXuan Zhou   } else {
790c4ad791aSXuan Zhou     *B = Bmpi;
791c4ad791aSXuan Zhou   }
792af295397SXuan Zhou   PetscFunctionReturn(0);
793af295397SXuan Zhou }
794af295397SXuan Zhou 
795af295397SXuan Zhou #undef __FUNCT__
796db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
797db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
798db31f6deSJed Brown {
799db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
800db31f6deSJed Brown   PetscErrorCode     ierr;
8015e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
8025e9f5b67SHong Zhang   PetscBool          flg;
8035e9f5b67SHong Zhang   MPI_Comm           icomm;
804db31f6deSJed Brown 
805db31f6deSJed Brown   PetscFunctionBegin;
806c1ee1e62SHong Zhang   a->interface->Detach();
807aae2c449SHong Zhang   delete a->interface;
808aae2c449SHong Zhang   delete a->esubmat;
809db31f6deSJed Brown   delete a->emat;
8105e9f5b67SHong Zhang 
811180a43e4SHong Zhang   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
8125e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
8135e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8145e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8155e9f5b67SHong Zhang     delete commgrid->grid;
8165e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8175e9f5b67SHong Zhang   }
8185e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
819db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr);
8201293973dSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr);
821*15767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr);
822db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
823db31f6deSJed Brown   PetscFunctionReturn(0);
824db31f6deSJed Brown }
825db31f6deSJed Brown 
826db31f6deSJed Brown #undef __FUNCT__
827db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
828db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
829db31f6deSJed Brown {
830db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
831db31f6deSJed Brown   PetscErrorCode ierr;
832db31f6deSJed Brown   PetscMPIInt    rsize,csize;
833db31f6deSJed Brown 
834db31f6deSJed Brown   PetscFunctionBegin;
835db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
836db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
837db31f6deSJed Brown 
838db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
839db31f6deSJed Brown   elem::Zero(*a->emat);
840db31f6deSJed Brown 
841db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
842db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
843db31f6deSJed Brown   if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
844db31f6deSJed Brown   a->commsize = rsize;
845db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
846db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
847db31f6deSJed Brown   a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize);
848db31f6deSJed Brown   a->m[1] = A->cmap->N / csize + (a->mr[1] != csize);
849db31f6deSJed Brown   PetscFunctionReturn(0);
850db31f6deSJed Brown }
851db31f6deSJed Brown 
852aae2c449SHong Zhang #undef __FUNCT__
853aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
854aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
855aae2c449SHong Zhang {
856aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
857aae2c449SHong Zhang 
858aae2c449SHong Zhang   PetscFunctionBegin;
859aae2c449SHong Zhang   a->interface->Detach();
860aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
861aae2c449SHong Zhang   PetscFunctionReturn(0);
862aae2c449SHong Zhang }
863aae2c449SHong Zhang 
864aae2c449SHong Zhang #undef __FUNCT__
865aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
866aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
867aae2c449SHong Zhang {
868aae2c449SHong Zhang   PetscFunctionBegin;
869aae2c449SHong Zhang   /* Currently does nothing */
870aae2c449SHong Zhang   PetscFunctionReturn(0);
871aae2c449SHong Zhang }
872aae2c449SHong Zhang 
87340d92e34SHong Zhang /* -------------------------------------------------------------------*/
87440d92e34SHong Zhang static struct _MatOps MatOps_Values = {
87540d92e34SHong Zhang        MatSetValues_Elemental,
87640d92e34SHong Zhang        0,
87740d92e34SHong Zhang        0,
87840d92e34SHong Zhang        MatMult_Elemental,
87940d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
8809426833fSXuan Zhou        MatMultTranspose_Elemental,
881e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
88240d92e34SHong Zhang        MatSolve_Elemental,
883df311e6cSXuan Zhou        MatSolveAdd_Elemental,
88440d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
88540d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
88640d92e34SHong Zhang        MatLUFactor_Elemental,
88740d92e34SHong Zhang        MatCholeskyFactor_Elemental,
88840d92e34SHong Zhang        0,
88940d92e34SHong Zhang        MatTranspose_Elemental,
89040d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
89140d92e34SHong Zhang        0,
89240d92e34SHong Zhang        0,
89340d92e34SHong Zhang        0,
89440d92e34SHong Zhang        MatNorm_Elemental,
89540d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
89640d92e34SHong Zhang        MatAssemblyEnd_Elemental,
89740d92e34SHong Zhang        0, //MatSetOption_Elemental,
89840d92e34SHong Zhang        MatZeroEntries_Elemental,
89940d92e34SHong Zhang /*24*/ 0,
90040d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
90140d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
90240d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
90340d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
90440d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
90540d92e34SHong Zhang        0,
90640d92e34SHong Zhang        0,
90740d92e34SHong Zhang        0,
90840d92e34SHong Zhang        0,
909df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
91040d92e34SHong Zhang        0,
91140d92e34SHong Zhang        0,
91240d92e34SHong Zhang        0,
91340d92e34SHong Zhang        0,
91440d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
91540d92e34SHong Zhang        0,
91640d92e34SHong Zhang        0,
91740d92e34SHong Zhang        0,
91840d92e34SHong Zhang        MatCopy_Elemental,
91940d92e34SHong Zhang /*44*/ 0,
92040d92e34SHong Zhang        MatScale_Elemental,
92140d92e34SHong Zhang        0,
92240d92e34SHong Zhang        0,
92340d92e34SHong Zhang        0,
92440d92e34SHong Zhang /*49*/ 0,
92540d92e34SHong Zhang        0,
92640d92e34SHong Zhang        0,
92740d92e34SHong Zhang        0,
92840d92e34SHong Zhang        0,
92940d92e34SHong Zhang /*54*/ 0,
93040d92e34SHong Zhang        0,
93140d92e34SHong Zhang        0,
93240d92e34SHong Zhang        0,
93340d92e34SHong Zhang        0,
93440d92e34SHong Zhang /*59*/ 0,
93540d92e34SHong Zhang        MatDestroy_Elemental,
93640d92e34SHong Zhang        MatView_Elemental,
93740d92e34SHong Zhang        0,
93840d92e34SHong Zhang        0,
93940d92e34SHong Zhang /*64*/ 0,
94040d92e34SHong Zhang        0,
94140d92e34SHong Zhang        0,
94240d92e34SHong Zhang        0,
94340d92e34SHong Zhang        0,
94440d92e34SHong Zhang /*69*/ 0,
94540d92e34SHong Zhang        0,
9462ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
94740d92e34SHong Zhang        0,
94840d92e34SHong Zhang        0,
94940d92e34SHong Zhang /*74*/ 0,
95040d92e34SHong Zhang        0,
95140d92e34SHong Zhang        0,
95240d92e34SHong Zhang        0,
95340d92e34SHong Zhang        0,
95440d92e34SHong Zhang /*79*/ 0,
95540d92e34SHong Zhang        0,
95640d92e34SHong Zhang        0,
95740d92e34SHong Zhang        0,
95840d92e34SHong Zhang        0,
95940d92e34SHong Zhang /*84*/ 0,
96040d92e34SHong Zhang        0,
96140d92e34SHong Zhang        0,
96240d92e34SHong Zhang        0,
96340d92e34SHong Zhang        0,
96440d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
96540d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
96640d92e34SHong Zhang        MatMatMultNumeric_Elemental,
96740d92e34SHong Zhang        0,
96840d92e34SHong Zhang        0,
96940d92e34SHong Zhang /*94*/ 0,
970df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
971df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
972df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
97340d92e34SHong Zhang        0,
97440d92e34SHong Zhang /*99*/ 0,
97540d92e34SHong Zhang        0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang        0,
97840d92e34SHong Zhang        0,
97940d92e34SHong Zhang /*104*/0,
98040d92e34SHong Zhang        0,
98140d92e34SHong Zhang        0,
98240d92e34SHong Zhang        0,
98340d92e34SHong Zhang        0,
98440d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
98540d92e34SHong Zhang        0,
98640d92e34SHong Zhang        0,
98740d92e34SHong Zhang        0,
98840d92e34SHong Zhang        0,
98940d92e34SHong Zhang /*114*/0,
99040d92e34SHong Zhang        0,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang        0,
99340d92e34SHong Zhang        0,
99440d92e34SHong Zhang /*119*/0,
99540d92e34SHong Zhang        0,
99640d92e34SHong Zhang        0,
99740d92e34SHong Zhang        0,
99840d92e34SHong Zhang        0,
99940d92e34SHong Zhang /*124*/0,
100040d92e34SHong Zhang        0,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang        0,
100340d92e34SHong Zhang        0,
100440d92e34SHong Zhang /*129*/0,
100540d92e34SHong Zhang        0,
100640d92e34SHong Zhang        0,
100740d92e34SHong Zhang        0,
100840d92e34SHong Zhang        0,
100940d92e34SHong Zhang /*134*/0,
101040d92e34SHong Zhang        0,
101140d92e34SHong Zhang        0,
101240d92e34SHong Zhang        0,
101340d92e34SHong Zhang        0
101440d92e34SHong Zhang };
101540d92e34SHong Zhang 
1016ed36708cSHong Zhang /*MC
1017ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1018ed36708cSHong Zhang 
1019ed36708cSHong Zhang    Options Database Keys:
1020ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
1021ed36708cSHong Zhang 
1022ed36708cSHong Zhang   Level: beginner
1023ed36708cSHong Zhang 
1024ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental()
1025ed36708cSHong Zhang M*/
1026ed36708cSHong Zhang EXTERN_C_BEGIN
1027db31f6deSJed Brown #undef __FUNCT__
1028db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1029db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A)
1030db31f6deSJed Brown {
1031db31f6deSJed Brown   Mat_Elemental      *a;
1032db31f6deSJed Brown   PetscErrorCode     ierr;
1033ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10345e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10355e9f5b67SHong Zhang   MPI_Comm           icomm;
1036ed667823SXuan Zhou   PetscInt           optv1,optv2;
1037db31f6deSJed Brown 
1038db31f6deSJed Brown   PetscFunctionBegin;
1039db31f6deSJed Brown   ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr);
104040d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
104140d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1042db31f6deSJed Brown 
1043db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1044db31f6deSJed Brown   A->data = (void*)a;
1045db31f6deSJed Brown 
1046db31f6deSJed Brown   /* Set up the elemental matrix */
1047db31f6deSJed Brown   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
1048ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
10495e9f5b67SHong Zhang 
10505e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
10515e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1052180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
10535e9f5b67SHong Zhang   }
10545e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
10555e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
10565e9f5b67SHong Zhang   if (!flg) {
10575e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
10582ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
10592ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1060ed667823SXuan Zhou     if (flg1 || flg2) {
1061ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
10622ef0cf24SXuan Zhou         SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1063ed667823SXuan Zhou       }
1064ed667823SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2);
10652ef0cf24SXuan Zhou     } else {
10662ef0cf24SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm);
1067ed667823SXuan Zhou     }
10685e9f5b67SHong Zhang     commgrid->grid_refct = 1;
10695e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
10705e9f5b67SHong Zhang   } else {
10715e9f5b67SHong Zhang     commgrid->grid_refct++;
10725e9f5b67SHong Zhang   }
10735e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
10745e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1075df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1076df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1077df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
10787c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1079db31f6deSJed Brown 
1080db31f6deSJed Brown   /* build cache for off array entries formed */
1081aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1082bafd5131SHong Zhang 
1083db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
1084*15767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1085db31f6deSJed Brown 
1086db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1087ed667823SXuan Zhou   PetscOptionsEnd();
1088db31f6deSJed Brown   PetscFunctionReturn(0);
1089db31f6deSJed Brown }
1090ed36708cSHong Zhang EXTERN_C_END
1091