xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 4a29722d1f3c662d97367f5313ac4ea619f0ce50)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
17db31f6deSJed Brown .  path - the dynamic library path or PETSC_NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57ed667823SXuan Zhou /* Sets Elemental options from the options database */
58ed667823SXuan Zhou #undef __FUNCT__
59ed667823SXuan Zhou #define __FUNCT__ "PetscSetElementalFromOptions"
60ed667823SXuan Zhou PetscErrorCode PetscSetElementalFromOptions(Mat A)
61ed667823SXuan Zhou {
62ed667823SXuan Zhou   PetscErrorCode ierr;
63ed667823SXuan Zhou 
64ed667823SXuan Zhou   PetscFunctionBegin;
65ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
66ed667823SXuan Zhou   PetscOptionsEnd();
67ed667823SXuan Zhou   PetscFunctionReturn(0);
68ed667823SXuan Zhou }
69ed667823SXuan Zhou 
70db31f6deSJed Brown #undef __FUNCT__
71db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
72db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
73db31f6deSJed Brown {
74db31f6deSJed Brown   PetscErrorCode ierr;
75db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
76db31f6deSJed Brown   PetscBool      iascii;
77db31f6deSJed Brown 
78db31f6deSJed Brown   PetscFunctionBegin;
79db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
80db31f6deSJed Brown   if (iascii) {
81db31f6deSJed Brown     PetscViewerFormat format;
82db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
83db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
8479673f7bSHong Zhang       /* call elemental viewing function */
852d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
86ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
87ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
884fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
8979673f7bSHong Zhang         /* call elemental viewing function */
9080622e0cSXuan Zhou         ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr);
914fe7bbcaSHong Zhang       }
9279673f7bSHong Zhang 
93db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
94db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
95db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
96db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
97db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
98834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
99d2daa67eSHong Zhang         Mat Aaij;
1000022473aSHong Zhang         ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
1010022473aSHong Zhang         ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
102d2daa67eSHong Zhang         ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
1030022473aSHong Zhang         ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
104834d3fecSHong Zhang       }
105db31f6deSJed Brown     } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format");
106d2daa67eSHong Zhang   } else {
107d2daa67eSHong Zhang     /* convert to aij/mpidense format and call MatView() */
108d2daa67eSHong Zhang     Mat Aaij;
109d2daa67eSHong Zhang     ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
110d2daa67eSHong Zhang     ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
111d2daa67eSHong Zhang     ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
112d2daa67eSHong Zhang     ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
113d2daa67eSHong Zhang   }
114db31f6deSJed Brown   PetscFunctionReturn(0);
115db31f6deSJed Brown }
116db31f6deSJed Brown 
117db31f6deSJed Brown #undef __FUNCT__
118180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
11915767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
120180a43e4SHong Zhang {
12115767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
12215767789SHong Zhang   PetscMPIInt    rank;
12315767789SHong Zhang 
124180a43e4SHong Zhang   PetscFunctionBegin;
12515767789SHong Zhang   MPI_Comm_rank(((PetscObject)A)->comm,&rank);
12615767789SHong Zhang 
12715767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
12815767789SHong Zhang   info->block_size     = 1.0; /* ? */
12915767789SHong Zhang 
13015767789SHong Zhang   if (flag == MAT_LOCAL) {
13115767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
13215767789SHong Zhang     info->nz_used        = info->nz_allocated;
13315767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
13415767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13515767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
13615767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
13715767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
13815767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
13915767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
14015767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
14115767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
14215767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
14315767789SHong Zhang   }
14415767789SHong Zhang 
14515767789SHong Zhang   info->nz_unneeded       = 0.0;
14615767789SHong Zhang   info->assemblies        = (double)A->num_ass;
14715767789SHong Zhang   info->mallocs           = 0;
14815767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
14915767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
15015767789SHong Zhang   info->fill_ratio_needed = 0;
15115767789SHong Zhang   info->factor_mallocs    = 0;
152180a43e4SHong Zhang   PetscFunctionReturn(0);
153180a43e4SHong Zhang }
154180a43e4SHong Zhang 
155180a43e4SHong Zhang #undef __FUNCT__
156db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
157e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
158db31f6deSJed Brown {
159db31f6deSJed Brown   PetscErrorCode ierr;
160db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
161db31f6deSJed Brown   PetscMPIInt    rank;
162db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
163db31f6deSJed Brown 
164db31f6deSJed Brown   PetscFunctionBegin;
165db31f6deSJed Brown   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
166db31f6deSJed Brown 
167db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
168db31f6deSJed Brown   for (i=0; i<nr; i++) {
169db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
170db31f6deSJed Brown     if (rows[i] < 0) continue;
171db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
172db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
173db31f6deSJed Brown     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation");
174db31f6deSJed Brown     for (j=0; j<nc; j++) {
175db31f6deSJed Brown       if (cols[j] < 0) continue;
176db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
177db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
178db31f6deSJed Brown       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation");
179aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
180aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
181aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
182e6dea9dbSXuan Zhou         a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]);
183aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
184aae2c449SHong Zhang         continue;
185ed36708cSHong Zhang       }
186db31f6deSJed Brown       elrow = erow / grid.MCSize();
187db31f6deSJed Brown       elcol = ecol / grid.MRSize();
188db31f6deSJed Brown       switch (imode) {
189e6dea9dbSXuan Zhou       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
190e6dea9dbSXuan Zhou       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
191db31f6deSJed Brown       default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
192db31f6deSJed Brown       }
193db31f6deSJed Brown     }
194db31f6deSJed Brown   }
195db31f6deSJed Brown   PetscFunctionReturn(0);
196db31f6deSJed Brown }
197db31f6deSJed Brown 
198db31f6deSJed Brown #undef __FUNCT__
199db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
200db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
201db31f6deSJed Brown {
202db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
203db31f6deSJed Brown   PetscErrorCode        ierr;
204e6dea9dbSXuan Zhou   const PetscElemScalar *x;
205e6dea9dbSXuan Zhou   PetscElemScalar       *y;
206df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
207db31f6deSJed Brown 
208db31f6deSJed Brown   PetscFunctionBegin;
209e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
210e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
211db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
212df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
213df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
214db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
215db31f6deSJed Brown   }
216e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
217e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
218db31f6deSJed Brown   PetscFunctionReturn(0);
219db31f6deSJed Brown }
220db31f6deSJed Brown 
221db31f6deSJed Brown #undef __FUNCT__
2229426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2239426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2249426833fSXuan Zhou {
2259426833fSXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
2269426833fSXuan Zhou   PetscErrorCode        ierr;
227df311e6cSXuan Zhou   const PetscElemScalar *x;
228df311e6cSXuan Zhou   PetscElemScalar       *y;
229e6dea9dbSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
2309426833fSXuan Zhou 
2319426833fSXuan Zhou   PetscFunctionBegin;
232e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
233e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2349426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
235df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
236df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2379426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2389426833fSXuan Zhou   }
239e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
240e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2419426833fSXuan Zhou   PetscFunctionReturn(0);
2429426833fSXuan Zhou }
2439426833fSXuan Zhou 
2449426833fSXuan Zhou #undef __FUNCT__
245db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
246db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
247db31f6deSJed Brown {
248db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
249db31f6deSJed Brown   PetscErrorCode        ierr;
250df311e6cSXuan Zhou   const PetscElemScalar *x;
251df311e6cSXuan Zhou   PetscElemScalar       *z;
252e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
253db31f6deSJed Brown 
254db31f6deSJed Brown   PetscFunctionBegin;
255db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
256e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
257e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
258db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
259df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
260df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
261db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
262db31f6deSJed Brown   }
263e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
264e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
265db31f6deSJed Brown   PetscFunctionReturn(0);
266db31f6deSJed Brown }
267db31f6deSJed Brown 
268db31f6deSJed Brown #undef __FUNCT__
269e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
270e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
271e883f9d5SXuan Zhou {
272e883f9d5SXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
273e883f9d5SXuan Zhou   PetscErrorCode        ierr;
274df311e6cSXuan Zhou   const PetscElemScalar *x;
275df311e6cSXuan Zhou   PetscElemScalar       *z;
276e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
277e883f9d5SXuan Zhou 
278e883f9d5SXuan Zhou   PetscFunctionBegin;
279e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
280e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
281e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
282e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
283df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
284df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
285e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
286e883f9d5SXuan Zhou   }
287e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
288e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
289e883f9d5SXuan Zhou   PetscFunctionReturn(0);
290e883f9d5SXuan Zhou }
291e883f9d5SXuan Zhou 
292e883f9d5SXuan Zhou #undef __FUNCT__
2939a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
2949a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
295c1d1b975SXuan Zhou {
296c1d1b975SXuan Zhou   Mat_Elemental    *a = (Mat_Elemental*)A->data;
297c1d1b975SXuan Zhou   Mat_Elemental    *b = (Mat_Elemental*)B->data;
2989a9e8502SHong Zhang   Mat_Elemental    *c = (Mat_Elemental*)C->data;
299e6dea9dbSXuan Zhou   PetscElemScalar  one = 1,zero = 0;
300c1d1b975SXuan Zhou 
301c1d1b975SXuan Zhou   PetscFunctionBegin;
302aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
303c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
304aae2c449SHong Zhang   }
3059a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
3069a9e8502SHong Zhang   PetscFunctionReturn(0);
3079a9e8502SHong Zhang }
3089a9e8502SHong Zhang 
3099a9e8502SHong Zhang #undef __FUNCT__
3109a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
3119a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
3129a9e8502SHong Zhang {
3139a9e8502SHong Zhang   PetscErrorCode ierr;
3149a9e8502SHong Zhang   Mat            Ce;
3159a9e8502SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm;
3169a9e8502SHong Zhang 
3179a9e8502SHong Zhang   PetscFunctionBegin;
3189a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3199a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3209a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3219a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3229a9e8502SHong Zhang   *C = Ce;
3239a9e8502SHong Zhang   PetscFunctionReturn(0);
3249a9e8502SHong Zhang }
3259a9e8502SHong Zhang 
3269a9e8502SHong Zhang #undef __FUNCT__
3279a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3289a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3299a9e8502SHong Zhang {
3309a9e8502SHong Zhang   PetscErrorCode ierr;
3319a9e8502SHong Zhang 
3329a9e8502SHong Zhang   PetscFunctionBegin;
3339a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3349a9e8502SHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3359a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3369a9e8502SHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3379a9e8502SHong Zhang   }
3389a9e8502SHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
3399a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
3409a9e8502SHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
341c1d1b975SXuan Zhou   PetscFunctionReturn(0);
342c1d1b975SXuan Zhou }
343c1d1b975SXuan Zhou 
344c1d1b975SXuan Zhou #undef __FUNCT__
345df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
346df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
347df311e6cSXuan Zhou {
348df311e6cSXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
349df311e6cSXuan Zhou   Mat_Elemental      *b = (Mat_Elemental*)B->data;
350df311e6cSXuan Zhou   Mat_Elemental      *c = (Mat_Elemental*)C->data;
351e6dea9dbSXuan Zhou   PetscElemScalar    one = 1,zero = 0;
352df311e6cSXuan Zhou 
353df311e6cSXuan Zhou   PetscFunctionBegin;
354df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
355df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
356df311e6cSXuan Zhou   }
357df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
358df311e6cSXuan Zhou   PetscFunctionReturn(0);
359df311e6cSXuan Zhou }
360df311e6cSXuan Zhou 
361df311e6cSXuan Zhou #undef __FUNCT__
362df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
363df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
364df311e6cSXuan Zhou {
365df311e6cSXuan Zhou   PetscErrorCode ierr;
366df311e6cSXuan Zhou   Mat            Ce;
367df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
368df311e6cSXuan Zhou 
369df311e6cSXuan Zhou   PetscFunctionBegin;
370df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
371df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
372df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
373df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
374df311e6cSXuan Zhou   *C = Ce;
375df311e6cSXuan Zhou   PetscFunctionReturn(0);
376df311e6cSXuan Zhou }
377df311e6cSXuan Zhou 
378df311e6cSXuan Zhou #undef __FUNCT__
379df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
380df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
381df311e6cSXuan Zhou {
382df311e6cSXuan Zhou   PetscErrorCode ierr;
383df311e6cSXuan Zhou 
384df311e6cSXuan Zhou   PetscFunctionBegin;
385df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
386df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
387df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
388df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
389df311e6cSXuan Zhou   }
390df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
391df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
392df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
393df311e6cSXuan Zhou   PetscFunctionReturn(0);
394df311e6cSXuan Zhou }
395df311e6cSXuan Zhou 
396df311e6cSXuan Zhou #undef __FUNCT__
3974ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
398e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
39965b78793SXuan Zhou {
40065b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
40165b78793SXuan Zhou 
40265b78793SXuan Zhou   PetscFunctionBegin;
403e6dea9dbSXuan Zhou   elem::Scal((PetscElemScalar)a,*x->emat);
40465b78793SXuan Zhou   PetscFunctionReturn(0);
40565b78793SXuan Zhou }
40665b78793SXuan Zhou 
40765b78793SXuan Zhou #undef __FUNCT__
4084ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
409e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
410e09a3074SHong Zhang {
411e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
412e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
413e09a3074SHong Zhang 
414e09a3074SHong Zhang   PetscFunctionBegin;
415e6dea9dbSXuan Zhou   elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
416e09a3074SHong Zhang   PetscFunctionReturn(0);
417e09a3074SHong Zhang }
418e09a3074SHong Zhang 
419ae844d54SHong Zhang #undef __FUNCT__
420d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
421d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
422d6223691SXuan Zhou {
423d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
424d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
425d6223691SXuan Zhou 
426d6223691SXuan Zhou   PetscFunctionBegin;
427d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
428d6223691SXuan Zhou   PetscFunctionReturn(0);
429d6223691SXuan Zhou }
430d6223691SXuan Zhou 
431d6223691SXuan Zhou #undef __FUNCT__
432df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
433df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
434df311e6cSXuan Zhou {
435df311e6cSXuan Zhou   Mat            Be;
436df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
437df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
438df311e6cSXuan Zhou   PetscErrorCode ierr;
439df311e6cSXuan Zhou 
440df311e6cSXuan Zhou   PetscFunctionBegin;
441df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
442df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
443df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
444df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
445df311e6cSXuan Zhou   *B = Be;
446df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
447df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
448df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
449df311e6cSXuan Zhou   }
450df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
451df311e6cSXuan Zhou   PetscFunctionReturn(0);
452df311e6cSXuan Zhou }
453df311e6cSXuan Zhou 
454df311e6cSXuan Zhou #undef __FUNCT__
455d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
456d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
457d6223691SXuan Zhou {
4583512f328SXuan Zhou   /* Only out-of-place supported */
4595262d616SXuan Zhou   Mat            Be;
4605262d616SXuan Zhou   PetscErrorCode ierr;
4615262d616SXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
4624fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
463d6223691SXuan Zhou 
464d6223691SXuan Zhou   PetscFunctionBegin;
4655262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
4665262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
4675262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
4685262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
4695262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
4705262d616SXuan Zhou     *B = Be;
4715262d616SXuan Zhou   }
4724fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
4735262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
4745262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
475d6223691SXuan Zhou   PetscFunctionReturn(0);
476d6223691SXuan Zhou }
477d6223691SXuan Zhou 
478d6223691SXuan Zhou #undef __FUNCT__
479dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental"
480dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A)
481dfcb0403SXuan Zhou {
482dfcb0403SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
483dfcb0403SXuan Zhou 
484dfcb0403SXuan Zhou   PetscFunctionBegin;
485dfcb0403SXuan Zhou   elem::Conjugate(*a->emat);
486dfcb0403SXuan Zhou   PetscFunctionReturn(0);
487dfcb0403SXuan Zhou }
488dfcb0403SXuan Zhou 
489dfcb0403SXuan Zhou #undef __FUNCT__
490*4a29722dSXuan Zhou #define __FUNCT__ "MatHermitianTranspose_Elemental"
491*4a29722dSXuan Zhou static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
492*4a29722dSXuan Zhou {
493*4a29722dSXuan Zhou   /* Only out-of-place supported */
494*4a29722dSXuan Zhou   Mat            Be;
495*4a29722dSXuan Zhou   PetscErrorCode ierr;
496*4a29722dSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
497*4a29722dSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
498*4a29722dSXuan Zhou 
499*4a29722dSXuan Zhou   PetscFunctionBegin;
500*4a29722dSXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
501*4a29722dSXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
502*4a29722dSXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
503*4a29722dSXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
504*4a29722dSXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
505*4a29722dSXuan Zhou     *B = Be;
506*4a29722dSXuan Zhou   }
507*4a29722dSXuan Zhou   b = (Mat_Elemental*)Be->data;
508*4a29722dSXuan Zhou   elem::Adjoint(*a->emat,*b->emat);
509*4a29722dSXuan Zhou   Be->assembled = PETSC_TRUE;
510*4a29722dSXuan Zhou   PetscFunctionReturn(0);
511*4a29722dSXuan Zhou }
512*4a29722dSXuan Zhou 
513*4a29722dSXuan Zhou #undef __FUNCT__
5141f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
5151f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
5161f881ff8SXuan Zhou {
5171f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
5181f881ff8SXuan Zhou   PetscErrorCode    ierr;
519df311e6cSXuan Zhou   PetscElemScalar   *x;
5201f881ff8SXuan Zhou 
5211f881ff8SXuan Zhou   PetscFunctionBegin;
52245cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
523e6dea9dbSXuan Zhou   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
524df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
525df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
526fc54b460SXuan Zhou   switch (A->factortype) {
527fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5281f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5294b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
53045cf121fSXuan Zhou       elem::Copy(xer,xe);
531fc54b460SXuan Zhou     } else {
5324b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
53345cf121fSXuan Zhou       elem::Copy(xer,xe);
5341f881ff8SXuan Zhou     }
535fc54b460SXuan Zhou     break;
536fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
537fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
538fc54b460SXuan Zhou     elem::Copy(xer,xe);
539fc54b460SXuan Zhou     break;
540fc54b460SXuan Zhou   default:
5414fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
542fc54b460SXuan Zhou     break;
5431f881ff8SXuan Zhou   }
544e6dea9dbSXuan Zhou   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
5451f881ff8SXuan Zhou   PetscFunctionReturn(0);
5461f881ff8SXuan Zhou }
5471f881ff8SXuan Zhou 
5481f881ff8SXuan Zhou #undef __FUNCT__
549df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
550df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
551df311e6cSXuan Zhou {
552df311e6cSXuan Zhou   PetscErrorCode    ierr;
553df311e6cSXuan Zhou 
554df311e6cSXuan Zhou   PetscFunctionBegin;
555df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5563d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
557df311e6cSXuan Zhou   PetscFunctionReturn(0);
558df311e6cSXuan Zhou }
559df311e6cSXuan Zhou 
560df311e6cSXuan Zhou #undef __FUNCT__
561ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
562ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
563ae844d54SHong Zhang {
5641f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
565d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
5661f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
5671f0e42cfSHong Zhang 
568ae844d54SHong Zhang   PetscFunctionBegin;
569d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
570fc54b460SXuan Zhou   switch (A->factortype) {
571fc54b460SXuan Zhou   case MAT_FACTOR_LU:
572d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5734b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
574fc54b460SXuan Zhou     } else {
5754b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
576d6223691SXuan Zhou     }
577fc54b460SXuan Zhou     break;
578fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
579fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
580fc54b460SXuan Zhou     break;
581fc54b460SXuan Zhou   default:
5824fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
583fc54b460SXuan Zhou     break;
584fc54b460SXuan Zhou   }
585ae844d54SHong Zhang   PetscFunctionReturn(0);
586ae844d54SHong Zhang }
587ae844d54SHong Zhang 
588ae844d54SHong Zhang #undef __FUNCT__
589ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
590ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
591ae844d54SHong Zhang {
5927c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
5937c920d81SXuan Zhou 
594ae844d54SHong Zhang   PetscFunctionBegin;
595d6223691SXuan Zhou   if (info->dtcol){
5967c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
5971293973dSHong Zhang   } else {
598d6223691SXuan Zhou     elem::LU(*a->emat);
599d6223691SXuan Zhou   }
6001293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
601834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
602ae844d54SHong Zhang   PetscFunctionReturn(0);
603ae844d54SHong Zhang }
604ae844d54SHong Zhang 
605d7c3f9d8SHong Zhang #undef __FUNCT__
606d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
607d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
608d7c3f9d8SHong Zhang {
609d7c3f9d8SHong Zhang   PetscErrorCode ierr;
610d7c3f9d8SHong Zhang 
611d7c3f9d8SHong Zhang   PetscFunctionBegin;
612d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
613d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
614d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
615d7c3f9d8SHong Zhang }
616d7c3f9d8SHong Zhang 
617d7c3f9d8SHong Zhang #undef __FUNCT__
618d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
619d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
620d7c3f9d8SHong Zhang {
621d7c3f9d8SHong Zhang   PetscFunctionBegin;
622d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
623d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
624d7c3f9d8SHong Zhang }
625d7c3f9d8SHong Zhang 
62645cf121fSXuan Zhou #undef __FUNCT__
62745cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
62845cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
62945cf121fSXuan Zhou {
63045cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
631df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
63245cf121fSXuan Zhou 
63345cf121fSXuan Zhou   PetscFunctionBegin;
634c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
635fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
636834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
63745cf121fSXuan Zhou   PetscFunctionReturn(0);
63845cf121fSXuan Zhou }
63945cf121fSXuan Zhou 
64079673f7bSHong Zhang #undef __FUNCT__
64179673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
64279673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
64379673f7bSHong Zhang {
644cb76c1d8SXuan Zhou   PetscErrorCode ierr;
645cb76c1d8SXuan Zhou 
646cb76c1d8SXuan Zhou   PetscFunctionBegin;
647cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
648cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
649cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
65079673f7bSHong Zhang }
651cb76c1d8SXuan Zhou 
65279673f7bSHong Zhang #undef __FUNCT__
65379673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
65479673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
65579673f7bSHong Zhang {
65679673f7bSHong Zhang   PetscFunctionBegin;
65779673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
65879673f7bSHong Zhang   PetscFunctionReturn(0);
65979673f7bSHong Zhang }
66079673f7bSHong Zhang 
66115767789SHong Zhang EXTERN_C_BEGIN
6621293973dSHong Zhang #undef __FUNCT__
66315767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
66415767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
66515767789SHong Zhang {
66615767789SHong Zhang   PetscFunctionBegin;
66715767789SHong Zhang   *type = MATSOLVERELEMENTAL;
66815767789SHong Zhang   PetscFunctionReturn(0);
66915767789SHong Zhang }
67015767789SHong Zhang EXTERN_C_END
67115767789SHong Zhang 
67215767789SHong Zhang EXTERN_C_BEGIN
67315767789SHong Zhang #undef __FUNCT__
67415767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
67515767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
6761293973dSHong Zhang {
6771293973dSHong Zhang   Mat            B;
6781293973dSHong Zhang   PetscErrorCode ierr;
6791293973dSHong Zhang 
6801293973dSHong Zhang   PetscFunctionBegin;
6811293973dSHong Zhang   /* Create the factorization matrix */
6821293973dSHong Zhang   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
6831293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
6841293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
6851293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
6861293973dSHong Zhang   B->factortype = ftype;
68715767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
6881293973dSHong Zhang   *F            = B;
6891293973dSHong Zhang   PetscFunctionReturn(0);
6901293973dSHong Zhang }
69115767789SHong Zhang EXTERN_C_END
6921293973dSHong Zhang 
6931f881ff8SXuan Zhou #undef __FUNCT__
6941f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
6951f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
6961f881ff8SXuan Zhou {
6971f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
6981f881ff8SXuan Zhou 
6991f881ff8SXuan Zhou   PetscFunctionBegin;
7001f881ff8SXuan Zhou   switch (type){
7011f881ff8SXuan Zhou   case NORM_1:
7021f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
7031f881ff8SXuan Zhou     break;
7041f881ff8SXuan Zhou   case NORM_FROBENIUS:
7051f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
7061f881ff8SXuan Zhou     break;
7071f881ff8SXuan Zhou   case NORM_INFINITY:
7081f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
7091f881ff8SXuan Zhou     break;
7101f881ff8SXuan Zhou   default:
7111f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
7121f881ff8SXuan Zhou   }
7131f881ff8SXuan Zhou   PetscFunctionReturn(0);
7141f881ff8SXuan Zhou }
7151f881ff8SXuan Zhou 
7165262d616SXuan Zhou #undef __FUNCT__
7175262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
7185262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
7195262d616SXuan Zhou {
7205262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7215262d616SXuan Zhou 
7225262d616SXuan Zhou   PetscFunctionBegin;
7235262d616SXuan Zhou   elem::Zero(*a->emat);
7245262d616SXuan Zhou   PetscFunctionReturn(0);
7255262d616SXuan Zhou }
7265262d616SXuan Zhou 
7271293973dSHong Zhang EXTERN_C_BEGIN
728e09a3074SHong Zhang #undef __FUNCT__
729db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
730db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
731db31f6deSJed Brown {
732db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
733db31f6deSJed Brown   PetscErrorCode ierr;
734db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
735db31f6deSJed Brown 
736db31f6deSJed Brown   PetscFunctionBegin;
737db31f6deSJed Brown   if (rows) {
738db31f6deSJed Brown     m = a->emat->LocalHeight();
739db31f6deSJed Brown     shift = a->emat->ColShift();
740db31f6deSJed Brown     stride = a->emat->ColStride();
741db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
742db31f6deSJed Brown     for (i=0; i<m; i++) {
743db31f6deSJed Brown       PetscInt rank,offset;
744db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
745db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
746db31f6deSJed Brown     }
747db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
748db31f6deSJed Brown   }
749db31f6deSJed Brown   if (cols) {
750db31f6deSJed Brown     m = a->emat->LocalWidth();
751db31f6deSJed Brown     shift = a->emat->RowShift();
752db31f6deSJed Brown     stride = a->emat->RowStride();
753db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
754db31f6deSJed Brown     for (i=0; i<m; i++) {
755db31f6deSJed Brown       PetscInt rank,offset;
756db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
757db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
758db31f6deSJed Brown     }
759db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
760db31f6deSJed Brown   }
761db31f6deSJed Brown   PetscFunctionReturn(0);
762db31f6deSJed Brown }
7631293973dSHong Zhang EXTERN_C_END
764db31f6deSJed Brown 
765db31f6deSJed Brown #undef __FUNCT__
7662ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
7672ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B)
768af295397SXuan Zhou {
7692ef0cf24SXuan Zhou   Mat                Bmpi;
770af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
771af295397SXuan Zhou   MPI_Comm           comm=((PetscObject)A)->comm;
7722ef0cf24SXuan Zhou   PetscErrorCode     ierr;
7732ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
774df311e6cSXuan Zhou   PetscElemScalar    v;
775af295397SXuan Zhou 
776af295397SXuan Zhou   PetscFunctionBegin;
777c4ad791aSXuan Zhou   if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) {
778c4ad791aSXuan Zhou     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
779c4ad791aSXuan Zhou   }
780af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
781af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7822ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
783af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
7842ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
7852ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
7862ef0cf24SXuan Zhou     PetscInt erow,ecol;
7872ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
7882ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
7892ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
7902ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
7912ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
7922ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
7932ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
7942ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
795e6dea9dbSXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
7962ef0cf24SXuan Zhou     }
7972ef0cf24SXuan Zhou   }
798af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
799af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
800c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
801c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
802c4ad791aSXuan Zhou   } else {
803c4ad791aSXuan Zhou     *B = Bmpi;
804c4ad791aSXuan Zhou   }
805af295397SXuan Zhou   PetscFunctionReturn(0);
806af295397SXuan Zhou }
807af295397SXuan Zhou 
808af295397SXuan Zhou #undef __FUNCT__
809db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
810db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
811db31f6deSJed Brown {
812db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
813db31f6deSJed Brown   PetscErrorCode     ierr;
8145e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
8155e9f5b67SHong Zhang   PetscBool          flg;
8165e9f5b67SHong Zhang   MPI_Comm           icomm;
817db31f6deSJed Brown 
818db31f6deSJed Brown   PetscFunctionBegin;
819c1ee1e62SHong Zhang   a->interface->Detach();
820aae2c449SHong Zhang   delete a->interface;
821aae2c449SHong Zhang   delete a->esubmat;
822db31f6deSJed Brown   delete a->emat;
8235e9f5b67SHong Zhang 
824180a43e4SHong Zhang   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
8255e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
8265e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8275e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8285e9f5b67SHong Zhang     delete commgrid->grid;
8295e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8305e9f5b67SHong Zhang   }
8315e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
832db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr);
8331293973dSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr);
83415767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr);
835db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
836db31f6deSJed Brown   PetscFunctionReturn(0);
837db31f6deSJed Brown }
838db31f6deSJed Brown 
839db31f6deSJed Brown #undef __FUNCT__
840db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
841db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
842db31f6deSJed Brown {
843db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
844db31f6deSJed Brown   PetscErrorCode ierr;
845db31f6deSJed Brown   PetscMPIInt    rsize,csize;
846db31f6deSJed Brown 
847db31f6deSJed Brown   PetscFunctionBegin;
848db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
849db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
850db31f6deSJed Brown 
851db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
852db31f6deSJed Brown   elem::Zero(*a->emat);
853db31f6deSJed Brown 
854db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
855db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
856db31f6deSJed Brown   if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
857db31f6deSJed Brown   a->commsize = rsize;
858db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
859db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
860db31f6deSJed Brown   a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize);
861db31f6deSJed Brown   a->m[1] = A->cmap->N / csize + (a->mr[1] != csize);
862db31f6deSJed Brown   PetscFunctionReturn(0);
863db31f6deSJed Brown }
864db31f6deSJed Brown 
865aae2c449SHong Zhang #undef __FUNCT__
866aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
867aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
868aae2c449SHong Zhang {
869aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
870aae2c449SHong Zhang 
871aae2c449SHong Zhang   PetscFunctionBegin;
872aae2c449SHong Zhang   a->interface->Detach();
873aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
874aae2c449SHong Zhang   PetscFunctionReturn(0);
875aae2c449SHong Zhang }
876aae2c449SHong Zhang 
877aae2c449SHong Zhang #undef __FUNCT__
878aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
879aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
880aae2c449SHong Zhang {
881aae2c449SHong Zhang   PetscFunctionBegin;
882aae2c449SHong Zhang   /* Currently does nothing */
883aae2c449SHong Zhang   PetscFunctionReturn(0);
884aae2c449SHong Zhang }
885aae2c449SHong Zhang 
88640d92e34SHong Zhang /* -------------------------------------------------------------------*/
88740d92e34SHong Zhang static struct _MatOps MatOps_Values = {
88840d92e34SHong Zhang        MatSetValues_Elemental,
88940d92e34SHong Zhang        0,
89040d92e34SHong Zhang        0,
89140d92e34SHong Zhang        MatMult_Elemental,
89240d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
8939426833fSXuan Zhou        MatMultTranspose_Elemental,
894e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
89540d92e34SHong Zhang        MatSolve_Elemental,
896df311e6cSXuan Zhou        MatSolveAdd_Elemental,
89740d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
89840d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
89940d92e34SHong Zhang        MatLUFactor_Elemental,
90040d92e34SHong Zhang        MatCholeskyFactor_Elemental,
90140d92e34SHong Zhang        0,
90240d92e34SHong Zhang        MatTranspose_Elemental,
90340d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
90440d92e34SHong Zhang        0,
90540d92e34SHong Zhang        0,
90640d92e34SHong Zhang        0,
90740d92e34SHong Zhang        MatNorm_Elemental,
90840d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
90940d92e34SHong Zhang        MatAssemblyEnd_Elemental,
91040d92e34SHong Zhang        0, //MatSetOption_Elemental,
91140d92e34SHong Zhang        MatZeroEntries_Elemental,
91240d92e34SHong Zhang /*24*/ 0,
91340d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
91440d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
91540d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
91640d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
91740d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
91840d92e34SHong Zhang        0,
91940d92e34SHong Zhang        0,
92040d92e34SHong Zhang        0,
92140d92e34SHong Zhang        0,
922df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
92340d92e34SHong Zhang        0,
92440d92e34SHong Zhang        0,
92540d92e34SHong Zhang        0,
92640d92e34SHong Zhang        0,
92740d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
92840d92e34SHong Zhang        0,
92940d92e34SHong Zhang        0,
93040d92e34SHong Zhang        0,
93140d92e34SHong Zhang        MatCopy_Elemental,
93240d92e34SHong Zhang /*44*/ 0,
93340d92e34SHong Zhang        MatScale_Elemental,
93440d92e34SHong Zhang        0,
93540d92e34SHong Zhang        0,
93640d92e34SHong Zhang        0,
93740d92e34SHong Zhang /*49*/ 0,
93840d92e34SHong Zhang        0,
93940d92e34SHong Zhang        0,
94040d92e34SHong Zhang        0,
94140d92e34SHong Zhang        0,
94240d92e34SHong Zhang /*54*/ 0,
94340d92e34SHong Zhang        0,
94440d92e34SHong Zhang        0,
94540d92e34SHong Zhang        0,
94640d92e34SHong Zhang        0,
94740d92e34SHong Zhang /*59*/ 0,
94840d92e34SHong Zhang        MatDestroy_Elemental,
94940d92e34SHong Zhang        MatView_Elemental,
95040d92e34SHong Zhang        0,
95140d92e34SHong Zhang        0,
95240d92e34SHong Zhang /*64*/ 0,
95340d92e34SHong Zhang        0,
95440d92e34SHong Zhang        0,
95540d92e34SHong Zhang        0,
95640d92e34SHong Zhang        0,
95740d92e34SHong Zhang /*69*/ 0,
95840d92e34SHong Zhang        0,
9592ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
96040d92e34SHong Zhang        0,
96140d92e34SHong Zhang        0,
96240d92e34SHong Zhang /*74*/ 0,
96340d92e34SHong Zhang        0,
96440d92e34SHong Zhang        0,
96540d92e34SHong Zhang        0,
96640d92e34SHong Zhang        0,
96740d92e34SHong Zhang /*79*/ 0,
96840d92e34SHong Zhang        0,
96940d92e34SHong Zhang        0,
97040d92e34SHong Zhang        0,
97140d92e34SHong Zhang        0,
97240d92e34SHong Zhang /*84*/ 0,
97340d92e34SHong Zhang        0,
97440d92e34SHong Zhang        0,
97540d92e34SHong Zhang        0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
97840d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
97940d92e34SHong Zhang        MatMatMultNumeric_Elemental,
98040d92e34SHong Zhang        0,
98140d92e34SHong Zhang        0,
98240d92e34SHong Zhang /*94*/ 0,
983df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
984df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
985df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
98640d92e34SHong Zhang        0,
98740d92e34SHong Zhang /*99*/ 0,
98840d92e34SHong Zhang        0,
98940d92e34SHong Zhang        0,
990dfcb0403SXuan Zhou        MatConjugate_Elemental,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang /*104*/0,
99340d92e34SHong Zhang        0,
99440d92e34SHong Zhang        0,
99540d92e34SHong Zhang        0,
99640d92e34SHong Zhang        0,
99740d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
99840d92e34SHong Zhang        0,
99940d92e34SHong Zhang        0,
100040d92e34SHong Zhang        0,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang /*114*/0,
100340d92e34SHong Zhang        0,
100440d92e34SHong Zhang        0,
100540d92e34SHong Zhang        0,
100640d92e34SHong Zhang        0,
100740d92e34SHong Zhang /*119*/0,
1008*4a29722dSXuan Zhou        MatHermitianTranspose_Elemental,
100940d92e34SHong Zhang        0,
101040d92e34SHong Zhang        0,
101140d92e34SHong Zhang        0,
101240d92e34SHong Zhang /*124*/0,
101340d92e34SHong Zhang        0,
101440d92e34SHong Zhang        0,
101540d92e34SHong Zhang        0,
101640d92e34SHong Zhang        0,
101740d92e34SHong Zhang /*129*/0,
101840d92e34SHong Zhang        0,
101940d92e34SHong Zhang        0,
102040d92e34SHong Zhang        0,
102140d92e34SHong Zhang        0,
102240d92e34SHong Zhang /*134*/0,
102340d92e34SHong Zhang        0,
102440d92e34SHong Zhang        0,
102540d92e34SHong Zhang        0,
102640d92e34SHong Zhang        0
102740d92e34SHong Zhang };
102840d92e34SHong Zhang 
1029ed36708cSHong Zhang /*MC
1030ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1031ed36708cSHong Zhang 
1032ed36708cSHong Zhang    Options Database Keys:
1033ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
1034ed36708cSHong Zhang 
1035ed36708cSHong Zhang   Level: beginner
1036ed36708cSHong Zhang 
1037ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental()
1038ed36708cSHong Zhang M*/
1039*4a29722dSXuan Zhou 
1040db31f6deSJed Brown #undef __FUNCT__
1041db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1042db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A)
1043db31f6deSJed Brown {
1044db31f6deSJed Brown   Mat_Elemental      *a;
1045db31f6deSJed Brown   PetscErrorCode     ierr;
1046ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10475e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10485e9f5b67SHong Zhang   MPI_Comm           icomm;
1049ed667823SXuan Zhou   PetscInt           optv1,optv2;
1050db31f6deSJed Brown 
1051db31f6deSJed Brown   PetscFunctionBegin;
1052db31f6deSJed Brown   ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr);
105340d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
105440d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1055db31f6deSJed Brown 
1056db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1057db31f6deSJed Brown   A->data = (void*)a;
1058db31f6deSJed Brown 
1059db31f6deSJed Brown   /* Set up the elemental matrix */
1060db31f6deSJed Brown   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
1061ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
10625e9f5b67SHong Zhang 
10635e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
10645e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1065180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
10665e9f5b67SHong Zhang   }
10675e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
10685e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
10695e9f5b67SHong Zhang   if (!flg) {
10705e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
10712ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
10722ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1073ed667823SXuan Zhou     if (flg1 || flg2) {
1074ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
10752ef0cf24SXuan Zhou         SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1076ed667823SXuan Zhou       }
1077ed667823SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2);
10782ef0cf24SXuan Zhou     } else {
10792ef0cf24SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm);
1080ed667823SXuan Zhou     }
10815e9f5b67SHong Zhang     commgrid->grid_refct = 1;
10825e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
10835e9f5b67SHong Zhang   } else {
10845e9f5b67SHong Zhang     commgrid->grid_refct++;
10855e9f5b67SHong Zhang   }
10865e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
10875e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1088df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1089df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1090df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
10917c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1092db31f6deSJed Brown 
1093db31f6deSJed Brown   /* build cache for off array entries formed */
1094aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1095bafd5131SHong Zhang 
1096db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
109715767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1098db31f6deSJed Brown 
1099db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1100ed667823SXuan Zhou   PetscOptionsEnd();
1101db31f6deSJed Brown   PetscFunctionReturn(0);
1102db31f6deSJed Brown }
1103*4a29722dSXuan Zhou 
1104