11673f470SJose E. Roman #include <petsc/private/petscelemental.h> 2db31f6deSJed Brown 327e75052SPierre Jolivet const char ElementalCitation[] = "@Article{Elemental2012,\n" 427e75052SPierre Jolivet " author = {Jack Poulson and Bryan Marker and Jeff R. Hammond and Nichols A. Romero and Robert {v}an~{d}e~{G}eijn},\n" 527e75052SPierre Jolivet " title = {Elemental: A New Framework for Distributed Memory Dense Matrix Computations},\n" 627e75052SPierre Jolivet " journal = {{ACM} Transactions on Mathematical Software},\n" 727e75052SPierre Jolivet " volume = {39},\n" 827e75052SPierre Jolivet " number = {2},\n" 927e75052SPierre Jolivet " year = {2013}\n" 1027e75052SPierre Jolivet "}\n"; 1127e75052SPierre Jolivet static PetscBool ElementalCite = PETSC_FALSE; 1227e75052SPierre Jolivet 135e9f5b67SHong Zhang /* 145e9f5b67SHong Zhang The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 155e9f5b67SHong Zhang is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 165e9f5b67SHong Zhang */ 175e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 185e9f5b67SHong Zhang 199371c9d4SSatish Balay static PetscErrorCode MatView_Elemental(Mat A, PetscViewer viewer) { 20db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 21db31f6deSJed Brown PetscBool iascii; 22db31f6deSJed Brown 23db31f6deSJed Brown PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 25db31f6deSJed Brown if (iascii) { 26db31f6deSJed Brown PetscViewerFormat format; 279566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 28db31f6deSJed Brown if (format == PETSC_VIEWER_ASCII_INFO) { 2979673f7bSHong Zhang /* call elemental viewing function */ 309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Elemental run parameters:\n")); 3163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " allocated entries=%zu\n", (*a->emat).AllocatedMemory())); 329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " grid height=%d, grid width=%d\n", (*a->emat).Grid().Height(), (*a->emat).Grid().Width())); 334fe7bbcaSHong Zhang if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 3479673f7bSHong Zhang /* call elemental viewing function */ 359566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)viewer), "test matview_elemental 2\n")); 364fe7bbcaSHong Zhang } 3779673f7bSHong Zhang 38db31f6deSJed Brown } else if (format == PETSC_VIEWER_DEFAULT) { 399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 40e8146892SSatish Balay El::Print(*a->emat, "Elemental matrix (cyclic ordering)"); 419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 42834d3fecSHong Zhang if (A->factortype == MAT_FACTOR_NONE) { 4361119200SXuan Zhou Mat Adense; 449566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATDENSE, MAT_INITIAL_MATRIX, &Adense)); 459566063dSJacob Faibussowitsch PetscCall(MatView(Adense, viewer)); 469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 47834d3fecSHong Zhang } 48ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Format"); 49d2daa67eSHong Zhang } else { 505cb544a0SHong Zhang /* convert to dense format and call MatView() */ 5161119200SXuan Zhou Mat Adense; 529566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATDENSE, MAT_INITIAL_MATRIX, &Adense)); 539566063dSJacob Faibussowitsch PetscCall(MatView(Adense, viewer)); 549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 55d2daa67eSHong Zhang } 56db31f6deSJed Brown PetscFunctionReturn(0); 57db31f6deSJed Brown } 58db31f6deSJed Brown 599371c9d4SSatish Balay static PetscErrorCode MatGetInfo_Elemental(Mat A, MatInfoType flag, MatInfo *info) { 6015767789SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 6115767789SHong Zhang 62180a43e4SHong Zhang PetscFunctionBegin; 635cb544a0SHong Zhang info->block_size = 1.0; 6415767789SHong Zhang 6515767789SHong Zhang if (flag == MAT_LOCAL) { 663966268fSBarry Smith info->nz_allocated = (*a->emat).AllocatedMemory(); /* locally allocated */ 6715767789SHong Zhang info->nz_used = info->nz_allocated; 6815767789SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 691c2dc1cbSBarry Smith //PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin))); 7015767789SHong Zhang /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 7115767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 7215767789SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7315767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 743966268fSBarry Smith info->nz_allocated = (*a->emat).AllocatedMemory(); /* locally allocated */ 7515767789SHong Zhang info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 761c2dc1cbSBarry Smith //PetscCall(MPIU_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 7715767789SHong Zhang //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 7815767789SHong Zhang } 7915767789SHong Zhang 8015767789SHong Zhang info->nz_unneeded = 0.0; 813966268fSBarry Smith info->assemblies = A->num_ass; 8215767789SHong Zhang info->mallocs = 0; 83*4dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 8415767789SHong Zhang info->fill_ratio_given = 0; /* determined by Elemental */ 8515767789SHong Zhang info->fill_ratio_needed = 0; 8615767789SHong Zhang info->factor_mallocs = 0; 87180a43e4SHong Zhang PetscFunctionReturn(0); 88180a43e4SHong Zhang } 89180a43e4SHong Zhang 909371c9d4SSatish Balay PetscErrorCode MatSetOption_Elemental(Mat A, MatOption op, PetscBool flg) { 9132d7a744SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 9232d7a744SHong Zhang 9332d7a744SHong Zhang PetscFunctionBegin; 9432d7a744SHong Zhang switch (op) { 9532d7a744SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 9632d7a744SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 9732d7a744SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 98891a0571SHong Zhang case MAT_SYMMETRIC: 99071fcb05SBarry Smith case MAT_SORTED_FULL: 1009371c9d4SSatish Balay case MAT_HERMITIAN: break; 1019371c9d4SSatish Balay case MAT_ROW_ORIENTED: a->roworiented = flg; break; 1029371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 10332d7a744SHong Zhang } 10432d7a744SHong Zhang PetscFunctionReturn(0); 10532d7a744SHong Zhang } 10632d7a744SHong Zhang 1079371c9d4SSatish Balay static PetscErrorCode MatSetValues_Elemental(Mat A, PetscInt nr, const PetscInt *rows, PetscInt nc, const PetscInt *cols, const PetscScalar *vals, InsertMode imode) { 108db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 109fbbcb730SJack Poulson PetscInt i, j, rrank, ridx, crank, cidx, erow, ecol, numQueues = 0; 110db31f6deSJed Brown 111db31f6deSJed Brown PetscFunctionBegin; 112fbbcb730SJack Poulson // TODO: Initialize matrix to all zeros? 113fbbcb730SJack Poulson 114fbbcb730SJack Poulson // Count the number of queues from this process 11532d7a744SHong Zhang if (a->roworiented) { 116db31f6deSJed Brown for (i = 0; i < nr; i++) { 117db31f6deSJed Brown if (rows[i] < 0) continue; 118db31f6deSJed Brown P2RO(A, 0, rows[i], &rrank, &ridx); 119db31f6deSJed Brown RO2E(A, 0, rrank, ridx, &erow); 120aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect row translation"); 121db31f6deSJed Brown for (j = 0; j < nc; j++) { 122db31f6deSJed Brown if (cols[j] < 0) continue; 123db31f6deSJed Brown P2RO(A, 1, cols[j], &crank, &cidx); 124db31f6deSJed Brown RO2E(A, 1, crank, cidx, &ecol); 125aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect col translation"); 126fbbcb730SJack Poulson if (!a->emat->IsLocal(erow, ecol)) { /* off-proc entry */ 127fbbcb730SJack Poulson /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */ 12808401ef6SPierre Jolivet PetscCheck(imode == ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only ADD_VALUES to off-processor entry is supported"); 129fbbcb730SJack Poulson ++numQueues; 130aae2c449SHong Zhang continue; 131ed36708cSHong Zhang } 132fbbcb730SJack Poulson /* printf("Locally updating (%d,%d)\n",erow,ecol); */ 133db31f6deSJed Brown switch (imode) { 134fbbcb730SJack Poulson case INSERT_VALUES: a->emat->Set(erow, ecol, (PetscElemScalar)vals[i * nc + j]); break; 135fbbcb730SJack Poulson case ADD_VALUES: a->emat->Update(erow, ecol, (PetscElemScalar)vals[i * nc + j]); break; 13698921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for InsertMode %d", (int)imode); 137db31f6deSJed Brown } 138db31f6deSJed Brown } 139db31f6deSJed Brown } 140fbbcb730SJack Poulson 141fbbcb730SJack Poulson /* printf("numQueues=%d\n",numQueues); */ 142fbbcb730SJack Poulson a->emat->Reserve(numQueues); 143fbbcb730SJack Poulson for (i = 0; i < nr; i++) { 144fbbcb730SJack Poulson if (rows[i] < 0) continue; 145fbbcb730SJack Poulson P2RO(A, 0, rows[i], &rrank, &ridx); 146fbbcb730SJack Poulson RO2E(A, 0, rrank, ridx, &erow); 147fbbcb730SJack Poulson for (j = 0; j < nc; j++) { 148fbbcb730SJack Poulson if (cols[j] < 0) continue; 149fbbcb730SJack Poulson P2RO(A, 1, cols[j], &crank, &cidx); 150fbbcb730SJack Poulson RO2E(A, 1, crank, cidx, &ecol); 151fbbcb730SJack Poulson if (!a->emat->IsLocal(erow, ecol)) { /*off-proc entry*/ 152fbbcb730SJack Poulson /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */ 153fbbcb730SJack Poulson a->emat->QueueUpdate(erow, ecol, vals[i * nc + j]); 154fbbcb730SJack Poulson } 155fbbcb730SJack Poulson } 156fbbcb730SJack Poulson } 15732d7a744SHong Zhang } else { /* columnoriented */ 15832d7a744SHong Zhang for (j = 0; j < nc; j++) { 15932d7a744SHong Zhang if (cols[j] < 0) continue; 16032d7a744SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 16132d7a744SHong Zhang RO2E(A, 1, crank, cidx, &ecol); 162aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect col translation"); 16332d7a744SHong Zhang for (i = 0; i < nr; i++) { 16432d7a744SHong Zhang if (rows[i] < 0) continue; 16532d7a744SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); 16632d7a744SHong Zhang RO2E(A, 0, rrank, ridx, &erow); 167aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect row translation"); 16832d7a744SHong Zhang if (!a->emat->IsLocal(erow, ecol)) { /* off-proc entry */ 16932d7a744SHong Zhang /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */ 17008401ef6SPierre Jolivet PetscCheck(imode == ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only ADD_VALUES to off-processor entry is supported"); 17132d7a744SHong Zhang ++numQueues; 17232d7a744SHong Zhang continue; 17332d7a744SHong Zhang } 17432d7a744SHong Zhang /* printf("Locally updating (%d,%d)\n",erow,ecol); */ 17532d7a744SHong Zhang switch (imode) { 17632d7a744SHong Zhang case INSERT_VALUES: a->emat->Set(erow, ecol, (PetscElemScalar)vals[i + j * nr]); break; 17732d7a744SHong Zhang case ADD_VALUES: a->emat->Update(erow, ecol, (PetscElemScalar)vals[i + j * nr]); break; 17898921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for InsertMode %d", (int)imode); 17932d7a744SHong Zhang } 18032d7a744SHong Zhang } 18132d7a744SHong Zhang } 18232d7a744SHong Zhang 18332d7a744SHong Zhang /* printf("numQueues=%d\n",numQueues); */ 18432d7a744SHong Zhang a->emat->Reserve(numQueues); 18532d7a744SHong Zhang for (j = 0; j < nc; j++) { 18632d7a744SHong Zhang if (cols[j] < 0) continue; 18732d7a744SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 18832d7a744SHong Zhang RO2E(A, 1, crank, cidx, &ecol); 18932d7a744SHong Zhang 19032d7a744SHong Zhang for (i = 0; i < nr; i++) { 19132d7a744SHong Zhang if (rows[i] < 0) continue; 19232d7a744SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); 19332d7a744SHong Zhang RO2E(A, 0, rrank, ridx, &erow); 19432d7a744SHong Zhang if (!a->emat->IsLocal(erow, ecol)) { /*off-proc entry*/ 19532d7a744SHong Zhang /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */ 19632d7a744SHong Zhang a->emat->QueueUpdate(erow, ecol, vals[i + j * nr]); 19732d7a744SHong Zhang } 19832d7a744SHong Zhang } 19932d7a744SHong Zhang } 20032d7a744SHong Zhang } 201db31f6deSJed Brown PetscFunctionReturn(0); 202db31f6deSJed Brown } 203db31f6deSJed Brown 2049371c9d4SSatish Balay static PetscErrorCode MatMult_Elemental(Mat A, Vec X, Vec Y) { 205db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 206e6dea9dbSXuan Zhou const PetscElemScalar *x; 207e6dea9dbSXuan Zhou PetscElemScalar *y; 208df311e6cSXuan Zhou PetscElemScalar one = 1, zero = 0; 209db31f6deSJed Brown 210db31f6deSJed Brown PetscFunctionBegin; 2119566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2129566063dSJacob Faibussowitsch PetscCall(VecGetArray(Y, (PetscScalar **)&y)); 213db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 214e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ye; 2150c18141cSBarry Smith xe.LockedAttach(A->cmap->N, 1, *a->grid, 0, 0, x, A->cmap->n); 2160c18141cSBarry Smith ye.Attach(A->rmap->N, 1, *a->grid, 0, 0, y, A->rmap->n); 217e8146892SSatish Balay El::Gemv(El::NORMAL, one, *a->emat, xe, zero, ye); 218db31f6deSJed Brown } 2199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Y, (PetscScalar **)&y)); 221db31f6deSJed Brown PetscFunctionReturn(0); 222db31f6deSJed Brown } 223db31f6deSJed Brown 2249371c9d4SSatish Balay static PetscErrorCode MatMultTranspose_Elemental(Mat A, Vec X, Vec Y) { 2259426833fSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 226df311e6cSXuan Zhou const PetscElemScalar *x; 227df311e6cSXuan Zhou PetscElemScalar *y; 228e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 2299426833fSXuan Zhou 2309426833fSXuan Zhou PetscFunctionBegin; 2319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2329566063dSJacob Faibussowitsch PetscCall(VecGetArray(Y, (PetscScalar **)&y)); 2339426833fSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 234e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ye; 2350c18141cSBarry Smith xe.LockedAttach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 2360c18141cSBarry Smith ye.Attach(A->cmap->N, 1, *a->grid, 0, 0, y, A->cmap->n); 237e8146892SSatish Balay El::Gemv(El::TRANSPOSE, one, *a->emat, xe, zero, ye); 2389426833fSXuan Zhou } 2399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Y, (PetscScalar **)&y)); 2419426833fSXuan Zhou PetscFunctionReturn(0); 2429426833fSXuan Zhou } 2439426833fSXuan Zhou 2449371c9d4SSatish Balay static PetscErrorCode MatMultAdd_Elemental(Mat A, Vec X, Vec Y, Vec Z) { 245db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 246df311e6cSXuan Zhou const PetscElemScalar *x; 247df311e6cSXuan Zhou PetscElemScalar *z; 248e6dea9dbSXuan Zhou PetscElemScalar one = 1; 249db31f6deSJed Brown 250db31f6deSJed Brown PetscFunctionBegin; 2519566063dSJacob Faibussowitsch if (Y != Z) PetscCall(VecCopy(Y, Z)); 2529566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2539566063dSJacob Faibussowitsch PetscCall(VecGetArray(Z, (PetscScalar **)&z)); 254db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 255e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ze; 2560c18141cSBarry Smith xe.LockedAttach(A->cmap->N, 1, *a->grid, 0, 0, x, A->cmap->n); 2570c18141cSBarry Smith ze.Attach(A->rmap->N, 1, *a->grid, 0, 0, z, A->rmap->n); 258e8146892SSatish Balay El::Gemv(El::NORMAL, one, *a->emat, xe, one, ze); 259db31f6deSJed Brown } 2609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Z, (PetscScalar **)&z)); 262db31f6deSJed Brown PetscFunctionReturn(0); 263db31f6deSJed Brown } 264db31f6deSJed Brown 2659371c9d4SSatish Balay static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A, Vec X, Vec Y, Vec Z) { 266e883f9d5SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 267df311e6cSXuan Zhou const PetscElemScalar *x; 268df311e6cSXuan Zhou PetscElemScalar *z; 269e6dea9dbSXuan Zhou PetscElemScalar one = 1; 270e883f9d5SXuan Zhou 271e883f9d5SXuan Zhou PetscFunctionBegin; 2729566063dSJacob Faibussowitsch if (Y != Z) PetscCall(VecCopy(Y, Z)); 2739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2749566063dSJacob Faibussowitsch PetscCall(VecGetArray(Z, (PetscScalar **)&z)); 275e883f9d5SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 276e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ze; 2770c18141cSBarry Smith xe.LockedAttach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 2780c18141cSBarry Smith ze.Attach(A->cmap->N, 1, *a->grid, 0, 0, z, A->cmap->n); 279e8146892SSatish Balay El::Gemv(El::TRANSPOSE, one, *a->emat, xe, one, ze); 280e883f9d5SXuan Zhou } 2819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Z, (PetscScalar **)&z)); 283e883f9d5SXuan Zhou PetscFunctionReturn(0); 284e883f9d5SXuan Zhou } 285e883f9d5SXuan Zhou 2869371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_Elemental(Mat A, Mat B, Mat C) { 287c1d1b975SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 288c1d1b975SXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 2899a9e8502SHong Zhang Mat_Elemental *c = (Mat_Elemental *)C->data; 290e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 291c1d1b975SXuan Zhou 292c1d1b975SXuan Zhou PetscFunctionBegin; 293aae2c449SHong Zhang { /* Scoping so that constructor is called before pointer is returned */ 294e8146892SSatish Balay El::Gemm(El::NORMAL, El::NORMAL, one, *a->emat, *b->emat, zero, *c->emat); 295aae2c449SHong Zhang } 2969a9e8502SHong Zhang C->assembled = PETSC_TRUE; 2979a9e8502SHong Zhang PetscFunctionReturn(0); 2989a9e8502SHong Zhang } 2999a9e8502SHong Zhang 3009371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_Elemental(Mat A, Mat B, PetscReal fill, Mat Ce) { 3019a9e8502SHong Zhang PetscFunctionBegin; 3029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ce, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 3039566063dSJacob Faibussowitsch PetscCall(MatSetType(Ce, MATELEMENTAL)); 3049566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ce)); 3054222ddf1SHong Zhang Ce->ops->matmultnumeric = MatMatMultNumeric_Elemental; 306c1d1b975SXuan Zhou PetscFunctionReturn(0); 307c1d1b975SXuan Zhou } 308c1d1b975SXuan Zhou 3099371c9d4SSatish Balay static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A, Mat B, Mat C) { 310df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 311df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 312df311e6cSXuan Zhou Mat_Elemental *c = (Mat_Elemental *)C->data; 313e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 314df311e6cSXuan Zhou 315df311e6cSXuan Zhou PetscFunctionBegin; 316df311e6cSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 317e8146892SSatish Balay El::Gemm(El::NORMAL, El::TRANSPOSE, one, *a->emat, *b->emat, zero, *c->emat); 318df311e6cSXuan Zhou } 319df311e6cSXuan Zhou C->assembled = PETSC_TRUE; 320df311e6cSXuan Zhou PetscFunctionReturn(0); 321df311e6cSXuan Zhou } 322df311e6cSXuan Zhou 3239371c9d4SSatish Balay static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A, Mat B, PetscReal fill, Mat C) { 324df311e6cSXuan Zhou PetscFunctionBegin; 3259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 3269566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATELEMENTAL)); 3279566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 328df311e6cSXuan Zhou PetscFunctionReturn(0); 329df311e6cSXuan Zhou } 330df311e6cSXuan Zhou 3314222ddf1SHong Zhang /* --------------------------------------- */ 3329371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_Elemental_AB(Mat C) { 3334222ddf1SHong Zhang PetscFunctionBegin; 3344222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_Elemental; 3354222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3364222ddf1SHong Zhang PetscFunctionReturn(0); 3374222ddf1SHong Zhang } 3384222ddf1SHong Zhang 3399371c9d4SSatish Balay static PetscErrorCode MatProductSetFromOptions_Elemental_ABt(Mat C) { 3404222ddf1SHong Zhang PetscFunctionBegin; 3414222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_Elemental; 3424222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 3434222ddf1SHong Zhang PetscFunctionReturn(0); 3444222ddf1SHong Zhang } 3454222ddf1SHong Zhang 3469371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatProductSetFromOptions_Elemental(Mat C) { 3474222ddf1SHong Zhang Mat_Product *product = C->product; 3484222ddf1SHong Zhang 3494222ddf1SHong Zhang PetscFunctionBegin; 3504222ddf1SHong Zhang switch (product->type) { 3519371c9d4SSatish Balay case MATPRODUCT_AB: PetscCall(MatProductSetFromOptions_Elemental_AB(C)); break; 3529371c9d4SSatish Balay case MATPRODUCT_ABt: PetscCall(MatProductSetFromOptions_Elemental_ABt(C)); break; 3539371c9d4SSatish Balay default: break; 3544222ddf1SHong Zhang } 3554222ddf1SHong Zhang PetscFunctionReturn(0); 3564222ddf1SHong Zhang } 357f6e5db1bSPierre Jolivet 3589371c9d4SSatish Balay PetscErrorCode MatMatMultNumeric_Elemental_MPIDense(Mat A, Mat B, Mat C) { 359f6e5db1bSPierre Jolivet Mat Be, Ce; 360f6e5db1bSPierre Jolivet 361f6e5db1bSPierre Jolivet PetscFunctionBegin; 3629566063dSJacob Faibussowitsch PetscCall(MatConvert(B, MATELEMENTAL, MAT_INITIAL_MATRIX, &Be)); 3639566063dSJacob Faibussowitsch PetscCall(MatMatMult(A, Be, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ce)); 3649566063dSJacob Faibussowitsch PetscCall(MatConvert(Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 3659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Be)); 3669566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ce)); 367f6e5db1bSPierre Jolivet PetscFunctionReturn(0); 368f6e5db1bSPierre Jolivet } 369f6e5db1bSPierre Jolivet 3709371c9d4SSatish Balay PetscErrorCode MatMatMultSymbolic_Elemental_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) { 371f6e5db1bSPierre Jolivet PetscFunctionBegin; 3729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 3739566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 3749566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 375f6e5db1bSPierre Jolivet C->ops->matmultnumeric = MatMatMultNumeric_Elemental_MPIDense; 376f6e5db1bSPierre Jolivet PetscFunctionReturn(0); 377f6e5db1bSPierre Jolivet } 378f6e5db1bSPierre Jolivet 3799371c9d4SSatish Balay PetscErrorCode MatProductSetFromOptions_Elemental_MPIDense_AB(Mat C) { 380f6e5db1bSPierre Jolivet PetscFunctionBegin; 381f6e5db1bSPierre Jolivet C->ops->matmultsymbolic = MatMatMultSymbolic_Elemental_MPIDense; 382f6e5db1bSPierre Jolivet C->ops->productsymbolic = MatProductSymbolic_AB; 383f6e5db1bSPierre Jolivet PetscFunctionReturn(0); 384f6e5db1bSPierre Jolivet } 385f6e5db1bSPierre Jolivet 3869371c9d4SSatish Balay PetscErrorCode MatProductSetFromOptions_Elemental_MPIDense(Mat C) { 387f6e5db1bSPierre Jolivet Mat_Product *product = C->product; 388f6e5db1bSPierre Jolivet 389f6e5db1bSPierre Jolivet PetscFunctionBegin; 39048a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_Elemental_MPIDense_AB(C)); 391f6e5db1bSPierre Jolivet PetscFunctionReturn(0); 392f6e5db1bSPierre Jolivet } 3934222ddf1SHong Zhang /* --------------------------------------- */ 3944222ddf1SHong Zhang 3959371c9d4SSatish Balay static PetscErrorCode MatGetDiagonal_Elemental(Mat A, Vec D) { 396a9d89745SXuan Zhou PetscInt i, nrows, ncols, nD, rrank, ridx, crank, cidx; 397a9d89745SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 398a9d89745SXuan Zhou PetscElemScalar v; 399ce94432eSBarry Smith MPI_Comm comm; 40061119200SXuan Zhou 40161119200SXuan Zhou PetscFunctionBegin; 4029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4039566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &nrows, &ncols)); 404a9d89745SXuan Zhou nD = nrows > ncols ? ncols : nrows; 405a9d89745SXuan Zhou for (i = 0; i < nD; i++) { 406a9d89745SXuan Zhou PetscInt erow, ecol; 407a9d89745SXuan Zhou P2RO(A, 0, i, &rrank, &ridx); 408a9d89745SXuan Zhou RO2E(A, 0, rrank, ridx, &erow); 409aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 410a9d89745SXuan Zhou P2RO(A, 1, i, &crank, &cidx); 411a9d89745SXuan Zhou RO2E(A, 1, crank, cidx, &ecol); 412aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 413a9d89745SXuan Zhou v = a->emat->Get(erow, ecol); 4149566063dSJacob Faibussowitsch PetscCall(VecSetValues(D, 1, &i, (PetscScalar *)&v, INSERT_VALUES)); 415ade3cc5eSXuan Zhou } 4169566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(D)); 4179566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(D)); 41861119200SXuan Zhou PetscFunctionReturn(0); 41961119200SXuan Zhou } 42061119200SXuan Zhou 4219371c9d4SSatish Balay static PetscErrorCode MatDiagonalScale_Elemental(Mat X, Vec L, Vec R) { 422ade3cc5eSXuan Zhou Mat_Elemental *x = (Mat_Elemental *)X->data; 423ade3cc5eSXuan Zhou const PetscElemScalar *d; 424ade3cc5eSXuan Zhou 425ade3cc5eSXuan Zhou PetscFunctionBegin; 4269065cd98SJed Brown if (R) { 4279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(R, (const PetscScalar **)&d)); 428e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> de; 4290c18141cSBarry Smith de.LockedAttach(X->cmap->N, 1, *x->grid, 0, 0, d, X->cmap->n); 430e8146892SSatish Balay El::DiagonalScale(El::RIGHT, El::NORMAL, de, *x->emat); 4319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(R, (const PetscScalar **)&d)); 4329065cd98SJed Brown } 4339065cd98SJed Brown if (L) { 4349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(L, (const PetscScalar **)&d)); 435e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> de; 4360c18141cSBarry Smith de.LockedAttach(X->rmap->N, 1, *x->grid, 0, 0, d, X->rmap->n); 437e8146892SSatish Balay El::DiagonalScale(El::LEFT, El::NORMAL, de, *x->emat); 4389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(L, (const PetscScalar **)&d)); 439ade3cc5eSXuan Zhou } 440ade3cc5eSXuan Zhou PetscFunctionReturn(0); 441ade3cc5eSXuan Zhou } 442ade3cc5eSXuan Zhou 4439371c9d4SSatish Balay static PetscErrorCode MatMissingDiagonal_Elemental(Mat A, PetscBool *missing, PetscInt *d) { 44434fa46e1SFrancesco Ballarin PetscFunctionBegin; 44534fa46e1SFrancesco Ballarin *missing = PETSC_FALSE; 44634fa46e1SFrancesco Ballarin PetscFunctionReturn(0); 44734fa46e1SFrancesco Ballarin } 44834fa46e1SFrancesco Ballarin 4499371c9d4SSatish Balay static PetscErrorCode MatScale_Elemental(Mat X, PetscScalar a) { 45065b78793SXuan Zhou Mat_Elemental *x = (Mat_Elemental *)X->data; 45165b78793SXuan Zhou 45265b78793SXuan Zhou PetscFunctionBegin; 453e8146892SSatish Balay El::Scale((PetscElemScalar)a, *x->emat); 45465b78793SXuan Zhou PetscFunctionReturn(0); 45565b78793SXuan Zhou } 45665b78793SXuan Zhou 457f82baa17SHong Zhang /* 458f82baa17SHong Zhang MatAXPY - Computes Y = a*X + Y. 459f82baa17SHong Zhang */ 4609371c9d4SSatish Balay static PetscErrorCode MatAXPY_Elemental(Mat Y, PetscScalar a, Mat X, MatStructure str) { 461e09a3074SHong Zhang Mat_Elemental *x = (Mat_Elemental *)X->data; 462e09a3074SHong Zhang Mat_Elemental *y = (Mat_Elemental *)Y->data; 463e09a3074SHong Zhang 464e09a3074SHong Zhang PetscFunctionBegin; 465e8146892SSatish Balay El::Axpy((PetscElemScalar)a, *x->emat, *y->emat); 4669566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 467e09a3074SHong Zhang PetscFunctionReturn(0); 468e09a3074SHong Zhang } 469e09a3074SHong Zhang 4709371c9d4SSatish Balay static PetscErrorCode MatCopy_Elemental(Mat A, Mat B, MatStructure str) { 471d6223691SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 472d6223691SXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 473d6223691SXuan Zhou 474d6223691SXuan Zhou PetscFunctionBegin; 475e8146892SSatish Balay El::Copy(*a->emat, *b->emat); 4769566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 477d6223691SXuan Zhou PetscFunctionReturn(0); 478d6223691SXuan Zhou } 479d6223691SXuan Zhou 4809371c9d4SSatish Balay static PetscErrorCode MatDuplicate_Elemental(Mat A, MatDuplicateOption op, Mat *B) { 481df311e6cSXuan Zhou Mat Be; 482ce94432eSBarry Smith MPI_Comm comm; 483df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 484df311e6cSXuan Zhou 485df311e6cSXuan Zhou PetscFunctionBegin; 4869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4879566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 4889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 4899566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 4909566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 491df311e6cSXuan Zhou *B = Be; 492df311e6cSXuan Zhou if (op == MAT_COPY_VALUES) { 493df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental *)Be->data; 494e8146892SSatish Balay El::Copy(*a->emat, *b->emat); 495df311e6cSXuan Zhou } 496df311e6cSXuan Zhou Be->assembled = PETSC_TRUE; 497df311e6cSXuan Zhou PetscFunctionReturn(0); 498df311e6cSXuan Zhou } 499df311e6cSXuan Zhou 5009371c9d4SSatish Balay static PetscErrorCode MatTranspose_Elemental(Mat A, MatReuse reuse, Mat *B) { 501ec8cb81fSBarry Smith Mat Be = *B; 502ce94432eSBarry Smith MPI_Comm comm; 5034fe7bbcaSHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data, *b; 504d6223691SXuan Zhou 505d6223691SXuan Zhou PetscFunctionBegin; 5067fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 5079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 5085cb544a0SHong Zhang /* Only out-of-place supported */ 5095f80ce2aSJacob Faibussowitsch PetscCheck(reuse != MAT_INPLACE_MATRIX, comm, PETSC_ERR_SUP, "Only out-of-place supported"); 5105262d616SXuan Zhou if (reuse == MAT_INITIAL_MATRIX) { 5119566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 5129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->cmap->n, A->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 5139566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 5149566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 5155262d616SXuan Zhou *B = Be; 5165262d616SXuan Zhou } 5174fe7bbcaSHong Zhang b = (Mat_Elemental *)Be->data; 518e8146892SSatish Balay El::Transpose(*a->emat, *b->emat); 5195262d616SXuan Zhou Be->assembled = PETSC_TRUE; 520d6223691SXuan Zhou PetscFunctionReturn(0); 521d6223691SXuan Zhou } 522d6223691SXuan Zhou 5239371c9d4SSatish Balay static PetscErrorCode MatConjugate_Elemental(Mat A) { 524dfcb0403SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 525dfcb0403SXuan Zhou 526dfcb0403SXuan Zhou PetscFunctionBegin; 527e8146892SSatish Balay El::Conjugate(*a->emat); 528dfcb0403SXuan Zhou PetscFunctionReturn(0); 529dfcb0403SXuan Zhou } 530dfcb0403SXuan Zhou 5319371c9d4SSatish Balay static PetscErrorCode MatHermitianTranspose_Elemental(Mat A, MatReuse reuse, Mat *B) { 532ec8cb81fSBarry Smith Mat Be = *B; 533ce94432eSBarry Smith MPI_Comm comm; 5344a29722dSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data, *b; 5354a29722dSXuan Zhou 5364a29722dSXuan Zhou PetscFunctionBegin; 5379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 5385cb544a0SHong Zhang /* Only out-of-place supported */ 5394a29722dSXuan Zhou if (reuse == MAT_INITIAL_MATRIX) { 5409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 5419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->cmap->n, A->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 5429566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 5439566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 5444a29722dSXuan Zhou *B = Be; 5454a29722dSXuan Zhou } 5464a29722dSXuan Zhou b = (Mat_Elemental *)Be->data; 547e8146892SSatish Balay El::Adjoint(*a->emat, *b->emat); 5484a29722dSXuan Zhou Be->assembled = PETSC_TRUE; 5494a29722dSXuan Zhou PetscFunctionReturn(0); 5504a29722dSXuan Zhou } 5514a29722dSXuan Zhou 5529371c9d4SSatish Balay static PetscErrorCode MatSolve_Elemental(Mat A, Vec B, Vec X) { 5531f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 554df311e6cSXuan Zhou PetscElemScalar *x; 555ea394475SSatish Balay PetscInt pivoting = a->pivoting; 5561f881ff8SXuan Zhou 5571f881ff8SXuan Zhou PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecCopy(B, X)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(X, (PetscScalar **)&x)); 560ea394475SSatish Balay 561e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe; 5620c18141cSBarry Smith xe.Attach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 563e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::MC, El::MR> xer(xe); 564fc54b460SXuan Zhou switch (A->factortype) { 565fc54b460SXuan Zhou case MAT_FACTOR_LU: 566ea394475SSatish Balay if (pivoting == 0) { 567e8146892SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, xer); 568ea394475SSatish Balay } else if (pivoting == 1) { 569ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, xer); 570ea394475SSatish Balay } else { /* pivoting == 2 */ 571ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *a->Q, xer); 5721f881ff8SXuan Zhou } 573fc54b460SXuan Zhou break; 5749371c9d4SSatish Balay case MAT_FACTOR_CHOLESKY: El::cholesky::SolveAfter(El::UPPER, El::NORMAL, *a->emat, xer); break; 5759371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unfactored Matrix or Unsupported MatFactorType"); break; 5761f881ff8SXuan Zhou } 577ea394475SSatish Balay El::Copy(xer, xe); 578ea394475SSatish Balay 5799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(X, (PetscScalar **)&x)); 5801f881ff8SXuan Zhou PetscFunctionReturn(0); 5811f881ff8SXuan Zhou } 5821f881ff8SXuan Zhou 5839371c9d4SSatish Balay static PetscErrorCode MatSolveAdd_Elemental(Mat A, Vec B, Vec Y, Vec X) { 584df311e6cSXuan Zhou PetscFunctionBegin; 5859566063dSJacob Faibussowitsch PetscCall(MatSolve_Elemental(A, B, X)); 5869566063dSJacob Faibussowitsch PetscCall(VecAXPY(X, 1, Y)); 587df311e6cSXuan Zhou PetscFunctionReturn(0); 588df311e6cSXuan Zhou } 589df311e6cSXuan Zhou 5909371c9d4SSatish Balay static PetscErrorCode MatMatSolve_Elemental(Mat A, Mat B, Mat X) { 5911f0e42cfSHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 59242ba530cSPierre Jolivet Mat_Elemental *x; 59342ba530cSPierre Jolivet Mat C; 594ea394475SSatish Balay PetscInt pivoting = a->pivoting; 59542ba530cSPierre Jolivet PetscBool flg; 59642ba530cSPierre Jolivet MatType type; 5971f0e42cfSHong Zhang 598ae844d54SHong Zhang PetscFunctionBegin; 5999566063dSJacob Faibussowitsch PetscCall(MatGetType(X, &type)); 6009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, MATELEMENTAL, &flg)); 60142ba530cSPierre Jolivet if (!flg) { 6029566063dSJacob Faibussowitsch PetscCall(MatConvert(B, MATELEMENTAL, MAT_INITIAL_MATRIX, &C)); 60342ba530cSPierre Jolivet x = (Mat_Elemental *)C->data; 60442ba530cSPierre Jolivet } else { 60542ba530cSPierre Jolivet x = (Mat_Elemental *)X->data; 60642ba530cSPierre Jolivet El::Copy(*((Mat_Elemental *)B->data)->emat, *x->emat); 60742ba530cSPierre Jolivet } 608fc54b460SXuan Zhou switch (A->factortype) { 609fc54b460SXuan Zhou case MAT_FACTOR_LU: 610ea394475SSatish Balay if (pivoting == 0) { 611e8146892SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *x->emat); 612ea394475SSatish Balay } else if (pivoting == 1) { 613ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *x->emat); 614ea394475SSatish Balay } else { 615ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *a->Q, *x->emat); 616d6223691SXuan Zhou } 617fc54b460SXuan Zhou break; 6189371c9d4SSatish Balay case MAT_FACTOR_CHOLESKY: El::cholesky::SolveAfter(El::UPPER, El::NORMAL, *a->emat, *x->emat); break; 6199371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unfactored Matrix or Unsupported MatFactorType"); break; 620fc54b460SXuan Zhou } 62142ba530cSPierre Jolivet if (!flg) { 6229566063dSJacob Faibussowitsch PetscCall(MatConvert(C, type, MAT_REUSE_MATRIX, &X)); 6239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 62442ba530cSPierre Jolivet } 625ae844d54SHong Zhang PetscFunctionReturn(0); 626ae844d54SHong Zhang } 627ae844d54SHong Zhang 6289371c9d4SSatish Balay static PetscErrorCode MatLUFactor_Elemental(Mat A, IS row, IS col, const MatFactorInfo *info) { 6297c920d81SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 630ea394475SSatish Balay PetscInt pivoting = a->pivoting; 6317c920d81SXuan Zhou 632ae844d54SHong Zhang PetscFunctionBegin; 633ea394475SSatish Balay if (pivoting == 0) { 634e8146892SSatish Balay El::LU(*a->emat); 635ea394475SSatish Balay } else if (pivoting == 1) { 636ea394475SSatish Balay El::LU(*a->emat, *a->P); 637ea394475SSatish Balay } else { 638ea394475SSatish Balay El::LU(*a->emat, *a->P, *a->Q); 639d6223691SXuan Zhou } 6401293973dSHong Zhang A->factortype = MAT_FACTOR_LU; 641834d3fecSHong Zhang A->assembled = PETSC_TRUE; 642f6224b95SHong Zhang 6439566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 6449566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &A->solvertype)); 645ae844d54SHong Zhang PetscFunctionReturn(0); 646ae844d54SHong Zhang } 647ae844d54SHong Zhang 6489371c9d4SSatish Balay static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F, Mat A, const MatFactorInfo *info) { 649d7c3f9d8SHong Zhang PetscFunctionBegin; 6509566063dSJacob Faibussowitsch PetscCall(MatCopy(A, F, SAME_NONZERO_PATTERN)); 6519566063dSJacob Faibussowitsch PetscCall(MatLUFactor_Elemental(F, 0, 0, info)); 652d7c3f9d8SHong Zhang PetscFunctionReturn(0); 653d7c3f9d8SHong Zhang } 654d7c3f9d8SHong Zhang 6559371c9d4SSatish Balay static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F, Mat A, IS r, IS c, const MatFactorInfo *info) { 656d7c3f9d8SHong Zhang PetscFunctionBegin; 657d8304050SJose E. Roman /* F is created and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 658d7c3f9d8SHong Zhang PetscFunctionReturn(0); 659d7c3f9d8SHong Zhang } 660d7c3f9d8SHong Zhang 6619371c9d4SSatish Balay static PetscErrorCode MatCholeskyFactor_Elemental(Mat A, IS perm, const MatFactorInfo *info) { 66245cf121fSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 663e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::MC, El::STAR> d; 66445cf121fSXuan Zhou 66545cf121fSXuan Zhou PetscFunctionBegin; 666e8146892SSatish Balay El::Cholesky(El::UPPER, *a->emat); 667fc54b460SXuan Zhou A->factortype = MAT_FACTOR_CHOLESKY; 668834d3fecSHong Zhang A->assembled = PETSC_TRUE; 669f6224b95SHong Zhang 6709566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 6719566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &A->solvertype)); 67245cf121fSXuan Zhou PetscFunctionReturn(0); 67345cf121fSXuan Zhou } 67445cf121fSXuan Zhou 6759371c9d4SSatish Balay static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F, Mat A, const MatFactorInfo *info) { 676cb76c1d8SXuan Zhou PetscFunctionBegin; 6779566063dSJacob Faibussowitsch PetscCall(MatCopy(A, F, SAME_NONZERO_PATTERN)); 6789566063dSJacob Faibussowitsch PetscCall(MatCholeskyFactor_Elemental(F, 0, info)); 679cb76c1d8SXuan Zhou PetscFunctionReturn(0); 68079673f7bSHong Zhang } 681cb76c1d8SXuan Zhou 6829371c9d4SSatish Balay static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F, Mat A, IS perm, const MatFactorInfo *info) { 68379673f7bSHong Zhang PetscFunctionBegin; 684d8304050SJose E. Roman /* F is created and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 68579673f7bSHong Zhang PetscFunctionReturn(0); 68679673f7bSHong Zhang } 68779673f7bSHong Zhang 6889371c9d4SSatish Balay PetscErrorCode MatFactorGetSolverType_elemental_elemental(Mat A, MatSolverType *type) { 68915767789SHong Zhang PetscFunctionBegin; 69015767789SHong Zhang *type = MATSOLVERELEMENTAL; 69115767789SHong Zhang PetscFunctionReturn(0); 69215767789SHong Zhang } 69315767789SHong Zhang 6949371c9d4SSatish Balay static PetscErrorCode MatGetFactor_elemental_elemental(Mat A, MatFactorType ftype, Mat *F) { 6951293973dSHong Zhang Mat B; 6961293973dSHong Zhang 6971293973dSHong Zhang PetscFunctionBegin; 6981293973dSHong Zhang /* Create the factorization matrix */ 6999566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 7009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 7019566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATELEMENTAL)); 7029566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 7031293973dSHong Zhang B->factortype = ftype; 70466e17bc3SBarry Smith B->trivialsymbolic = PETSC_TRUE; 7059566063dSJacob Faibussowitsch PetscCall(PetscFree(B->solvertype)); 7069566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &B->solvertype)); 70700c67f3bSHong Zhang 7089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatFactorGetSolverType_C", MatFactorGetSolverType_elemental_elemental)); 7091293973dSHong Zhang *F = B; 7101293973dSHong Zhang PetscFunctionReturn(0); 7111293973dSHong Zhang } 7121293973dSHong Zhang 7139371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_Elemental(void) { 71442c9c57cSBarry Smith PetscFunctionBegin; 7159566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERELEMENTAL, MATELEMENTAL, MAT_FACTOR_LU, MatGetFactor_elemental_elemental)); 7169566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERELEMENTAL, MATELEMENTAL, MAT_FACTOR_CHOLESKY, MatGetFactor_elemental_elemental)); 71742c9c57cSBarry Smith PetscFunctionReturn(0); 71842c9c57cSBarry Smith } 71942c9c57cSBarry Smith 7209371c9d4SSatish Balay static PetscErrorCode MatNorm_Elemental(Mat A, NormType type, PetscReal *nrm) { 7211f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 7221f881ff8SXuan Zhou 7231f881ff8SXuan Zhou PetscFunctionBegin; 7241f881ff8SXuan Zhou switch (type) { 7259371c9d4SSatish Balay case NORM_1: *nrm = El::OneNorm(*a->emat); break; 7269371c9d4SSatish Balay case NORM_FROBENIUS: *nrm = El::FrobeniusNorm(*a->emat); break; 7279371c9d4SSatish Balay case NORM_INFINITY: *nrm = El::InfinityNorm(*a->emat); break; 7289371c9d4SSatish Balay default: SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Unsupported norm type"); 7291f881ff8SXuan Zhou } 7301f881ff8SXuan Zhou PetscFunctionReturn(0); 7311f881ff8SXuan Zhou } 7321f881ff8SXuan Zhou 7339371c9d4SSatish Balay static PetscErrorCode MatZeroEntries_Elemental(Mat A) { 7345262d616SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 7355262d616SXuan Zhou 7365262d616SXuan Zhou PetscFunctionBegin; 737e8146892SSatish Balay El::Zero(*a->emat); 7385262d616SXuan Zhou PetscFunctionReturn(0); 7395262d616SXuan Zhou } 7405262d616SXuan Zhou 7419371c9d4SSatish Balay static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A, IS *rows, IS *cols) { 742db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 743db31f6deSJed Brown PetscInt i, m, shift, stride, *idx; 744db31f6deSJed Brown 745db31f6deSJed Brown PetscFunctionBegin; 746db31f6deSJed Brown if (rows) { 747db31f6deSJed Brown m = a->emat->LocalHeight(); 748db31f6deSJed Brown shift = a->emat->ColShift(); 749db31f6deSJed Brown stride = a->emat->ColStride(); 7509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 751db31f6deSJed Brown for (i = 0; i < m; i++) { 752db31f6deSJed Brown PetscInt rank, offset; 753db31f6deSJed Brown E2RO(A, 0, shift + i * stride, &rank, &offset); 754db31f6deSJed Brown RO2P(A, 0, rank, offset, &idx[i]); 755db31f6deSJed Brown } 7569566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, rows)); 757db31f6deSJed Brown } 758db31f6deSJed Brown if (cols) { 759db31f6deSJed Brown m = a->emat->LocalWidth(); 760db31f6deSJed Brown shift = a->emat->RowShift(); 761db31f6deSJed Brown stride = a->emat->RowStride(); 7629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 763db31f6deSJed Brown for (i = 0; i < m; i++) { 764db31f6deSJed Brown PetscInt rank, offset; 765db31f6deSJed Brown E2RO(A, 1, shift + i * stride, &rank, &offset); 766db31f6deSJed Brown RO2P(A, 1, rank, offset, &idx[i]); 767db31f6deSJed Brown } 7689566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, cols)); 769db31f6deSJed Brown } 770db31f6deSJed Brown PetscFunctionReturn(0); 771db31f6deSJed Brown } 772db31f6deSJed Brown 7739371c9d4SSatish Balay static PetscErrorCode MatConvert_Elemental_Dense(Mat A, MatType newtype, MatReuse reuse, Mat *B) { 7742ef0cf24SXuan Zhou Mat Bmpi; 775af295397SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 776ce94432eSBarry Smith MPI_Comm comm; 777fa9e26c8SHong Zhang IS isrows, iscols; 778fa9e26c8SHong Zhang PetscInt rrank, ridx, crank, cidx, nrows, ncols, i, j, erow, ecol, elrow, elcol; 779fa9e26c8SHong Zhang const PetscInt *rows, *cols; 780df311e6cSXuan Zhou PetscElemScalar v; 781fa9e26c8SHong Zhang const El::Grid &grid = a->emat->Grid(); 782af295397SXuan Zhou 783af295397SXuan Zhou PetscFunctionBegin; 7849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 785a000e53bSHong Zhang 786de0a22f0SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 787de0a22f0SHong Zhang Bmpi = *B; 788de0a22f0SHong Zhang } else { 7899566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Bmpi)); 7909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Bmpi, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 7919566063dSJacob Faibussowitsch PetscCall(MatSetType(Bmpi, MATDENSE)); 7929566063dSJacob Faibussowitsch PetscCall(MatSetUp(Bmpi)); 793de0a22f0SHong Zhang } 794fa9e26c8SHong Zhang 795fa9e26c8SHong Zhang /* Get local entries of A */ 7969566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipIS(A, &isrows, &iscols)); 7979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrows, &nrows)); 7989566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrows, &rows)); 7999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscols, &ncols)); 8009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscols, &cols)); 801fa9e26c8SHong Zhang 80257299f2fSHong Zhang if (a->roworiented) { 8032ef0cf24SXuan Zhou for (i = 0; i < nrows; i++) { 804fa9e26c8SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */ 8052ef0cf24SXuan Zhou RO2E(A, 0, rrank, ridx, &erow); 806aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 8072ef0cf24SXuan Zhou for (j = 0; j < ncols; j++) { 808fa9e26c8SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 8092ef0cf24SXuan Zhou RO2E(A, 1, crank, cidx, &ecol); 810aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 811fa9e26c8SHong Zhang 812fa9e26c8SHong Zhang elrow = erow / grid.MCSize(); /* Elemental local row index */ 813fa9e26c8SHong Zhang elcol = ecol / grid.MRSize(); /* Elemental local column index */ 814fa9e26c8SHong Zhang v = a->emat->GetLocal(elrow, elcol); 8159566063dSJacob Faibussowitsch PetscCall(MatSetValues(Bmpi, 1, &rows[i], 1, &cols[j], (PetscScalar *)&v, INSERT_VALUES)); 8162ef0cf24SXuan Zhou } 8172ef0cf24SXuan Zhou } 81857299f2fSHong Zhang } else { /* column-oriented */ 81957299f2fSHong Zhang for (j = 0; j < ncols; j++) { 82057299f2fSHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 82157299f2fSHong Zhang RO2E(A, 1, crank, cidx, &ecol); 822aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 82357299f2fSHong Zhang for (i = 0; i < nrows; i++) { 82457299f2fSHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */ 82557299f2fSHong Zhang RO2E(A, 0, rrank, ridx, &erow); 826aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 82757299f2fSHong Zhang 82857299f2fSHong Zhang elrow = erow / grid.MCSize(); /* Elemental local row index */ 82957299f2fSHong Zhang elcol = ecol / grid.MRSize(); /* Elemental local column index */ 83057299f2fSHong Zhang v = a->emat->GetLocal(elrow, elcol); 8319566063dSJacob Faibussowitsch PetscCall(MatSetValues(Bmpi, 1, &rows[i], 1, &cols[j], (PetscScalar *)&v, INSERT_VALUES)); 83257299f2fSHong Zhang } 83357299f2fSHong Zhang } 83457299f2fSHong Zhang } 8359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Bmpi, MAT_FINAL_ASSEMBLY)); 8369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Bmpi, MAT_FINAL_ASSEMBLY)); 837511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 8389566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &Bmpi)); 839c4ad791aSXuan Zhou } else { 840c4ad791aSXuan Zhou *B = Bmpi; 841c4ad791aSXuan Zhou } 8429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrows)); 8439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscols)); 844af295397SXuan Zhou PetscFunctionReturn(0); 845af295397SXuan Zhou } 846af295397SXuan Zhou 8479371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 848af8000cdSHong Zhang Mat mat_elemental; 849af8000cdSHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols; 850af8000cdSHong Zhang const PetscInt *cols; 851af8000cdSHong Zhang const PetscScalar *vals; 852af8000cdSHong Zhang 853af8000cdSHong Zhang PetscFunctionBegin; 854bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 855bdeae278SStefano Zampini mat_elemental = *newmat; 8569566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 857bdeae278SStefano Zampini } else { 8589566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 8599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 8609566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 8619566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 862bdeae278SStefano Zampini } 863af8000cdSHong Zhang for (row = 0; row < M; row++) { 8649566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 865bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 8669566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 8679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 868af8000cdSHong Zhang } 8699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 8709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 871af8000cdSHong Zhang 872511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 8739566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 874af8000cdSHong Zhang } else { 875af8000cdSHong Zhang *newmat = mat_elemental; 876af8000cdSHong Zhang } 877af8000cdSHong Zhang PetscFunctionReturn(0); 878af8000cdSHong Zhang } 879af8000cdSHong Zhang 8809371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 8815d7652ecSHong Zhang Mat mat_elemental; 8825d7652ecSHong Zhang PetscInt row, ncols, rstart = A->rmap->rstart, rend = A->rmap->rend, j; 8835d7652ecSHong Zhang const PetscInt *cols; 8845d7652ecSHong Zhang const PetscScalar *vals; 8855d7652ecSHong Zhang 8865d7652ecSHong Zhang PetscFunctionBegin; 887bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 888bdeae278SStefano Zampini mat_elemental = *newmat; 8899566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 890bdeae278SStefano Zampini } else { 8919566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 8929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 8939566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 8949566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 895bdeae278SStefano Zampini } 8965d7652ecSHong Zhang for (row = rstart; row < rend; row++) { 8979566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 8985d7652ecSHong Zhang for (j = 0; j < ncols; j++) { 899bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 9009566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, 1, &cols[j], &vals[j], ADD_VALUES)); 9015d7652ecSHong Zhang } 9029566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 9035d7652ecSHong Zhang } 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 9059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 9065d7652ecSHong Zhang 907511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9089566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 9095d7652ecSHong Zhang } else { 9105d7652ecSHong Zhang *newmat = mat_elemental; 9115d7652ecSHong Zhang } 9125d7652ecSHong Zhang PetscFunctionReturn(0); 9135d7652ecSHong Zhang } 9145d7652ecSHong Zhang 9159371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 9166214f412SHong Zhang Mat mat_elemental; 9176214f412SHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols, j; 9186214f412SHong Zhang const PetscInt *cols; 9196214f412SHong Zhang const PetscScalar *vals; 9206214f412SHong Zhang 9216214f412SHong Zhang PetscFunctionBegin; 922bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 923bdeae278SStefano Zampini mat_elemental = *newmat; 9249566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 925bdeae278SStefano Zampini } else { 9269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 9279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 9289566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 9299566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 930bdeae278SStefano Zampini } 9319566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 9326214f412SHong Zhang for (row = 0; row < M; row++) { 9339566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 934bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 9359566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 9366214f412SHong Zhang for (j = 0; j < ncols; j++) { /* lower triangular part */ 937eb1ec7c1SStefano Zampini PetscScalar v; 9386214f412SHong Zhang if (cols[j] == row) continue; 939b94d7dedSBarry Smith v = A->hermitian == PETSC_BOOL3_TRUE ? PetscConj(vals[j]) : vals[j]; 9409566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &cols[j], 1, &row, &v, ADD_VALUES)); 9416214f412SHong Zhang } 9429566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 9436214f412SHong Zhang } 9449566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 9459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 9469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 9476214f412SHong Zhang 948511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9499566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 9506214f412SHong Zhang } else { 9516214f412SHong Zhang *newmat = mat_elemental; 9526214f412SHong Zhang } 9536214f412SHong Zhang PetscFunctionReturn(0); 9546214f412SHong Zhang } 9556214f412SHong Zhang 9569371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 9576214f412SHong Zhang Mat mat_elemental; 9586214f412SHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols, j, rstart = A->rmap->rstart, rend = A->rmap->rend; 9596214f412SHong Zhang const PetscInt *cols; 9606214f412SHong Zhang const PetscScalar *vals; 9616214f412SHong Zhang 9626214f412SHong Zhang PetscFunctionBegin; 963bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 964bdeae278SStefano Zampini mat_elemental = *newmat; 9659566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 966bdeae278SStefano Zampini } else { 9679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 9689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 9699566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 9709566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 971bdeae278SStefano Zampini } 9729566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 9736214f412SHong Zhang for (row = rstart; row < rend; row++) { 9749566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 975bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 9769566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 9776214f412SHong Zhang for (j = 0; j < ncols; j++) { /* lower triangular part */ 978eb1ec7c1SStefano Zampini PetscScalar v; 9796214f412SHong Zhang if (cols[j] == row) continue; 980b94d7dedSBarry Smith v = A->hermitian == PETSC_BOOL3_TRUE ? PetscConj(vals[j]) : vals[j]; 9819566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &cols[j], 1, &row, &v, ADD_VALUES)); 9826214f412SHong Zhang } 9839566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 9846214f412SHong Zhang } 9859566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 9886214f412SHong Zhang 989511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9909566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 9916214f412SHong Zhang } else { 9926214f412SHong Zhang *newmat = mat_elemental; 9936214f412SHong Zhang } 9946214f412SHong Zhang PetscFunctionReturn(0); 9956214f412SHong Zhang } 9966214f412SHong Zhang 9979371c9d4SSatish Balay static PetscErrorCode MatDestroy_Elemental(Mat A) { 998db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 9995e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 10005e9f5b67SHong Zhang PetscBool flg; 10015e9f5b67SHong Zhang MPI_Comm icomm; 1002db31f6deSJed Brown 1003db31f6deSJed Brown PetscFunctionBegin; 1004db31f6deSJed Brown delete a->emat; 1005ea394475SSatish Balay delete a->P; 1006ea394475SSatish Balay delete a->Q; 10075e9f5b67SHong Zhang 1008e8146892SSatish Balay El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 10099566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(cxxcomm.comm, &icomm, NULL)); 10109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Elemental_keyval, (void **)&commgrid, (int *)&flg)); 10115e9f5b67SHong Zhang if (--commgrid->grid_refct == 0) { 10125e9f5b67SHong Zhang delete commgrid->grid; 10139566063dSJacob Faibussowitsch PetscCall(PetscFree(commgrid)); 10149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Elemental_keyval)); 10155e9f5b67SHong Zhang } 10169566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&icomm)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatGetOwnershipIS_C", NULL)); 10189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL)); 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_elemental_mpidense_C", NULL)); 10209566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 1021db31f6deSJed Brown PetscFunctionReturn(0); 1022db31f6deSJed Brown } 1023db31f6deSJed Brown 10249371c9d4SSatish Balay PetscErrorCode MatSetUp_Elemental(Mat A) { 1025db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 1026f19600a0SHong Zhang MPI_Comm comm; 1027db31f6deSJed Brown PetscMPIInt rsize, csize; 1028f19600a0SHong Zhang PetscInt n; 1029db31f6deSJed Brown 1030db31f6deSJed Brown PetscFunctionBegin; 10319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1033db31f6deSJed Brown 1034d8304050SJose E. Roman /* Check if local row and column sizes are equally distributed. 1035f19600a0SHong Zhang Jed: Elemental uses "element" cyclic ordering so the sizes need to match that 1036f19600a0SHong Zhang exactly. The strategy in MatElemental is for PETSc to implicitly permute to block ordering (like would be returned by 1037d8304050SJose E. Roman PetscSplitOwnership(comm,&n,&N), at which point Elemental matrices can act on PETSc vectors without redistributing the vectors. */ 10389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1039f19600a0SHong Zhang n = PETSC_DECIDE; 10409566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm, &n, &A->rmap->N)); 10415f80ce2aSJacob Faibussowitsch PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " of ELEMENTAL matrix must be equally distributed", A->rmap->n); 1042f19600a0SHong Zhang 1043f19600a0SHong Zhang n = PETSC_DECIDE; 10449566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm, &n, &A->cmap->N)); 10455f80ce2aSJacob Faibussowitsch PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " of ELEMENTAL matrix must be equally distributed", A->cmap->n); 1046f19600a0SHong Zhang 10472f613bf5SBarry Smith a->emat->Resize(A->rmap->N, A->cmap->N); 1048e8146892SSatish Balay El::Zero(*a->emat); 1049db31f6deSJed Brown 10509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(A->rmap->comm, &rsize)); 10519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(A->cmap->comm, &csize)); 10525f80ce2aSJacob Faibussowitsch PetscCheck(csize == rsize, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_INCOMP, "Cannot use row and column communicators of different sizes"); 1053db31f6deSJed Brown a->commsize = rsize; 10549371c9d4SSatish Balay a->mr[0] = A->rmap->N % rsize; 10559371c9d4SSatish Balay if (!a->mr[0]) a->mr[0] = rsize; 10569371c9d4SSatish Balay a->mr[1] = A->cmap->N % csize; 10579371c9d4SSatish Balay if (!a->mr[1]) a->mr[1] = csize; 1058db31f6deSJed Brown a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 1059db31f6deSJed Brown a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 1060db31f6deSJed Brown PetscFunctionReturn(0); 1061db31f6deSJed Brown } 1062db31f6deSJed Brown 10639371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) { 1064aae2c449SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 1065aae2c449SHong Zhang 1066aae2c449SHong Zhang PetscFunctionBegin; 1067fbbcb730SJack Poulson /* printf("Calling ProcessQueues\n"); */ 1068fbbcb730SJack Poulson a->emat->ProcessQueues(); 1069fbbcb730SJack Poulson /* printf("Finished ProcessQueues\n"); */ 1070aae2c449SHong Zhang PetscFunctionReturn(0); 1071aae2c449SHong Zhang } 1072aae2c449SHong Zhang 10739371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) { 1074aae2c449SHong Zhang PetscFunctionBegin; 1075aae2c449SHong Zhang /* Currently does nothing */ 1076aae2c449SHong Zhang PetscFunctionReturn(0); 1077aae2c449SHong Zhang } 1078aae2c449SHong Zhang 10799371c9d4SSatish Balay PetscErrorCode MatLoad_Elemental(Mat newMat, PetscViewer viewer) { 10807b30e0f1SHong Zhang Mat Adense, Ae; 10817b30e0f1SHong Zhang MPI_Comm comm; 10827b30e0f1SHong Zhang 10837b30e0f1SHong Zhang PetscFunctionBegin; 10849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)newMat, &comm)); 10859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Adense)); 10869566063dSJacob Faibussowitsch PetscCall(MatSetType(Adense, MATDENSE)); 10879566063dSJacob Faibussowitsch PetscCall(MatLoad(Adense, viewer)); 10889566063dSJacob Faibussowitsch PetscCall(MatConvert(Adense, MATELEMENTAL, MAT_INITIAL_MATRIX, &Ae)); 10899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 10909566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(newMat, &Ae)); 10917b30e0f1SHong Zhang PetscFunctionReturn(0); 10927b30e0f1SHong Zhang } 10937b30e0f1SHong Zhang 109440d92e34SHong Zhang /* -------------------------------------------------------------------*/ 10959371c9d4SSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_Elemental, 109640d92e34SHong Zhang 0, 109740d92e34SHong Zhang 0, 109840d92e34SHong Zhang MatMult_Elemental, 109940d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental, 11009426833fSXuan Zhou MatMultTranspose_Elemental, 1101e883f9d5SXuan Zhou MatMultTransposeAdd_Elemental, 110240d92e34SHong Zhang MatSolve_Elemental, 1103df311e6cSXuan Zhou MatSolveAdd_Elemental, 11042ef15aa2SHong Zhang 0, 11052ef15aa2SHong Zhang /*10*/ 0, 110640d92e34SHong Zhang MatLUFactor_Elemental, 110740d92e34SHong Zhang MatCholeskyFactor_Elemental, 110840d92e34SHong Zhang 0, 110940d92e34SHong Zhang MatTranspose_Elemental, 111040d92e34SHong Zhang /*15*/ MatGetInfo_Elemental, 111140d92e34SHong Zhang 0, 111261119200SXuan Zhou MatGetDiagonal_Elemental, 1113ade3cc5eSXuan Zhou MatDiagonalScale_Elemental, 111440d92e34SHong Zhang MatNorm_Elemental, 111540d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental, 111640d92e34SHong Zhang MatAssemblyEnd_Elemental, 111732d7a744SHong Zhang MatSetOption_Elemental, 111840d92e34SHong Zhang MatZeroEntries_Elemental, 111940d92e34SHong Zhang /*24*/ 0, 112040d92e34SHong Zhang MatLUFactorSymbolic_Elemental, 112140d92e34SHong Zhang MatLUFactorNumeric_Elemental, 112240d92e34SHong Zhang MatCholeskyFactorSymbolic_Elemental, 112340d92e34SHong Zhang MatCholeskyFactorNumeric_Elemental, 112440d92e34SHong Zhang /*29*/ MatSetUp_Elemental, 112540d92e34SHong Zhang 0, 112640d92e34SHong Zhang 0, 112740d92e34SHong Zhang 0, 112840d92e34SHong Zhang 0, 1129df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental, 113040d92e34SHong Zhang 0, 113140d92e34SHong Zhang 0, 113240d92e34SHong Zhang 0, 113340d92e34SHong Zhang 0, 113440d92e34SHong Zhang /*39*/ MatAXPY_Elemental, 113540d92e34SHong Zhang 0, 113640d92e34SHong Zhang 0, 113740d92e34SHong Zhang 0, 113840d92e34SHong Zhang MatCopy_Elemental, 113940d92e34SHong Zhang /*44*/ 0, 114040d92e34SHong Zhang MatScale_Elemental, 11417d68702bSBarry Smith MatShift_Basic, 114240d92e34SHong Zhang 0, 114340d92e34SHong Zhang 0, 114440d92e34SHong Zhang /*49*/ 0, 114540d92e34SHong Zhang 0, 114640d92e34SHong Zhang 0, 114740d92e34SHong Zhang 0, 114840d92e34SHong Zhang 0, 114940d92e34SHong Zhang /*54*/ 0, 115040d92e34SHong Zhang 0, 115140d92e34SHong Zhang 0, 115240d92e34SHong Zhang 0, 115340d92e34SHong Zhang 0, 115440d92e34SHong Zhang /*59*/ 0, 115540d92e34SHong Zhang MatDestroy_Elemental, 115640d92e34SHong Zhang MatView_Elemental, 115740d92e34SHong Zhang 0, 115840d92e34SHong Zhang 0, 115940d92e34SHong Zhang /*64*/ 0, 116040d92e34SHong Zhang 0, 116140d92e34SHong Zhang 0, 116240d92e34SHong Zhang 0, 116340d92e34SHong Zhang 0, 116440d92e34SHong Zhang /*69*/ 0, 116540d92e34SHong Zhang 0, 11662ef0cf24SXuan Zhou MatConvert_Elemental_Dense, 116740d92e34SHong Zhang 0, 116840d92e34SHong Zhang 0, 116940d92e34SHong Zhang /*74*/ 0, 117040d92e34SHong Zhang 0, 117140d92e34SHong Zhang 0, 117240d92e34SHong Zhang 0, 117340d92e34SHong Zhang 0, 117440d92e34SHong Zhang /*79*/ 0, 117540d92e34SHong Zhang 0, 117640d92e34SHong Zhang 0, 117740d92e34SHong Zhang 0, 11787b30e0f1SHong Zhang MatLoad_Elemental, 117940d92e34SHong Zhang /*84*/ 0, 118040d92e34SHong Zhang 0, 118140d92e34SHong Zhang 0, 118240d92e34SHong Zhang 0, 118340d92e34SHong Zhang 0, 11844222ddf1SHong Zhang /*89*/ 0, 11854222ddf1SHong Zhang 0, 118640d92e34SHong Zhang MatMatMultNumeric_Elemental, 118740d92e34SHong Zhang 0, 118840d92e34SHong Zhang 0, 118940d92e34SHong Zhang /*94*/ 0, 11904222ddf1SHong Zhang 0, 11914222ddf1SHong Zhang 0, 1192df311e6cSXuan Zhou MatMatTransposeMultNumeric_Elemental, 119340d92e34SHong Zhang 0, 11944222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_Elemental, 119540d92e34SHong Zhang 0, 119640d92e34SHong Zhang 0, 1197dfcb0403SXuan Zhou MatConjugate_Elemental, 119840d92e34SHong Zhang 0, 119940d92e34SHong Zhang /*104*/ 0, 120040d92e34SHong Zhang 0, 120140d92e34SHong Zhang 0, 120240d92e34SHong Zhang 0, 120340d92e34SHong Zhang 0, 120440d92e34SHong Zhang /*109*/ MatMatSolve_Elemental, 120540d92e34SHong Zhang 0, 120640d92e34SHong Zhang 0, 120740d92e34SHong Zhang 0, 120834fa46e1SFrancesco Ballarin MatMissingDiagonal_Elemental, 120940d92e34SHong Zhang /*114*/ 0, 121040d92e34SHong Zhang 0, 121140d92e34SHong Zhang 0, 121240d92e34SHong Zhang 0, 121340d92e34SHong Zhang 0, 121440d92e34SHong Zhang /*119*/ 0, 12154a29722dSXuan Zhou MatHermitianTranspose_Elemental, 121640d92e34SHong Zhang 0, 121740d92e34SHong Zhang 0, 121840d92e34SHong Zhang 0, 121940d92e34SHong Zhang /*124*/ 0, 122040d92e34SHong Zhang 0, 122140d92e34SHong Zhang 0, 122240d92e34SHong Zhang 0, 122340d92e34SHong Zhang 0, 122440d92e34SHong Zhang /*129*/ 0, 122540d92e34SHong Zhang 0, 122640d92e34SHong Zhang 0, 122740d92e34SHong Zhang 0, 122840d92e34SHong Zhang 0, 122940d92e34SHong Zhang /*134*/ 0, 123040d92e34SHong Zhang 0, 123140d92e34SHong Zhang 0, 123240d92e34SHong Zhang 0, 12334222ddf1SHong Zhang 0, 12344222ddf1SHong Zhang 0, 12354222ddf1SHong Zhang /*140*/ 0, 12364222ddf1SHong Zhang 0, 12374222ddf1SHong Zhang 0, 12384222ddf1SHong Zhang 0, 12394222ddf1SHong Zhang 0, 12404222ddf1SHong Zhang /*145*/ 0, 12414222ddf1SHong Zhang 0, 124299a7f59eSMark Adams 0, 124399a7f59eSMark Adams 0, 12447fb60732SBarry Smith 0, 12459371c9d4SSatish Balay /*150*/ 0}; 124640d92e34SHong Zhang 1247ed36708cSHong Zhang /*MC 1248ed36708cSHong Zhang MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1249ed36708cSHong Zhang 1250c2b89b5dSBarry Smith Use ./configure --download-elemental to install PETSc to use Elemental 1251c2b89b5dSBarry Smith 1252ed36708cSHong Zhang Options Database Keys: 12535cc86fc1SJed Brown + -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 125489bba20eSBarry Smith . -pc_factor_mat_solver_type elemental - to use this direct solver with the option -pc_type lu 12555cc86fc1SJed Brown - -mat_elemental_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix 1256ed36708cSHong Zhang 1257ed36708cSHong Zhang Level: beginner 1258ed36708cSHong Zhang 125989bba20eSBarry Smith Note: 126089bba20eSBarry Smith Note unlike most matrix formats, this format does not store all the matrix entries for a contiguous 126189bba20eSBarry Smith range of rows on an MPI rank. Use `MatGetOwnershipIS()` to determine what values are stored on 126289bba20eSBarry Smith the given rank. 126389bba20eSBarry Smith 126489bba20eSBarry Smith .seealso: `MATDENSE`, `MATSCALAPACK`, `MatGetOwnershipIS()` 1265ed36708cSHong Zhang M*/ 12664a29722dSXuan Zhou 12679371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A) { 1268db31f6deSJed Brown Mat_Elemental *a; 12695682a260SJack Poulson PetscBool flg, flg1; 12705e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 12715e9f5b67SHong Zhang MPI_Comm icomm; 12725682a260SJack Poulson PetscInt optv1; 1273db31f6deSJed Brown 1274db31f6deSJed Brown PetscFunctionBegin; 12759566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(A->ops, &MatOps_Values, sizeof(struct _MatOps))); 127640d92e34SHong Zhang A->insertmode = NOT_SET_VALUES; 1277db31f6deSJed Brown 1278*4dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1279db31f6deSJed Brown A->data = (void *)a; 1280db31f6deSJed Brown 1281db31f6deSJed Brown /* Set up the elemental matrix */ 1282e8146892SSatish Balay El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 12835e9f5b67SHong Zhang 12845e9f5b67SHong Zhang /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 12855e9f5b67SHong Zhang if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 12869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Elemental_keyval, (void *)0)); 12879566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ElementalCitation, &ElementalCite)); 12885e9f5b67SHong Zhang } 12899566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(cxxcomm.comm, &icomm, NULL)); 12909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Elemental_keyval, (void **)&commgrid, (int *)&flg)); 12915e9f5b67SHong Zhang if (!flg) { 1292*4dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&commgrid)); 12935cb544a0SHong Zhang 1294d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)A), ((PetscObject)A)->prefix, "Elemental Options", "Mat"); 1295e8146892SSatish Balay /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until El::Grid() is called */ 12969566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_elemental_grid_height", "Grid Height", "None", El::mpi::Size(cxxcomm), &optv1, &flg1)); 12975682a260SJack Poulson if (flg1) { 1298aed4548fSBarry Smith PetscCheck((El::mpi::Size(cxxcomm) % optv1) == 0, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_INCOMP, "Grid Height %" PetscInt_FMT " must evenly divide CommSize %" PetscInt_FMT, optv1, (PetscInt)El::mpi::Size(cxxcomm)); 1299e8146892SSatish Balay commgrid->grid = new El::Grid(cxxcomm, optv1); /* use user-provided grid height */ 13002ef0cf24SXuan Zhou } else { 1301e8146892SSatish Balay commgrid->grid = new El::Grid(cxxcomm); /* use Elemental default grid sizes */ 1302da0640a4SHong Zhang /* printf("new commgrid->grid = %p\n",commgrid->grid); -- memory leak revealed by valgrind? */ 1303ed667823SXuan Zhou } 13045e9f5b67SHong Zhang commgrid->grid_refct = 1; 13059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_set_attr(icomm, Petsc_Elemental_keyval, (void *)commgrid)); 1306ea394475SSatish Balay 1307ea394475SSatish Balay a->pivoting = 1; 13089566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_elemental_pivoting", "Pivoting", "None", a->pivoting, &a->pivoting, NULL)); 1309ea394475SSatish Balay 1310d0609cedSBarry Smith PetscOptionsEnd(); 13115e9f5b67SHong Zhang } else { 13125e9f5b67SHong Zhang commgrid->grid_refct++; 13135e9f5b67SHong Zhang } 13149566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&icomm)); 13155e9f5b67SHong Zhang a->grid = commgrid->grid; 1316e8146892SSatish Balay a->emat = new El::DistMatrix<PetscElemScalar>(*a->grid); 131732d7a744SHong Zhang a->roworiented = PETSC_TRUE; 1318db31f6deSJed Brown 13199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatGetOwnershipIS_C", MatGetOwnershipIS_Elemental)); 13209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_elemental_mpidense_C", MatProductSetFromOptions_Elemental_MPIDense)); 13219566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, MATELEMENTAL)); 1322db31f6deSJed Brown PetscFunctionReturn(0); 1323db31f6deSJed Brown } 1324