1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2db31f6deSJed Brown 35e9f5b67SHong Zhang /* 45e9f5b67SHong Zhang The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 55e9f5b67SHong Zhang is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 65e9f5b67SHong Zhang */ 75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 85e9f5b67SHong Zhang 9db31f6deSJed Brown #undef __FUNCT__ 10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage" 11db31f6deSJed Brown /*@C 12db31f6deSJed Brown PetscElementalInitializePackage - Initialize Elemental package 13db31f6deSJed Brown 14db31f6deSJed Brown Logically Collective 15db31f6deSJed Brown 16db31f6deSJed Brown Input Arguments: 17db31f6deSJed Brown . path - the dynamic library path or PETSC_NULL 18db31f6deSJed Brown 19db31f6deSJed Brown Level: developer 20db31f6deSJed Brown 21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22db31f6deSJed Brown @*/ 23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path) 24db31f6deSJed Brown { 25db31f6deSJed Brown PetscErrorCode ierr; 26db31f6deSJed Brown 27db31f6deSJed Brown PetscFunctionBegin; 28db31f6deSJed Brown if (elem::Initialized()) PetscFunctionReturn(0); 29db31f6deSJed Brown { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30db31f6deSJed Brown int zero = 0; 31db31f6deSJed Brown char **nothing = 0; 32db31f6deSJed Brown elem::Initialize(zero,nothing); 33db31f6deSJed Brown } 34db31f6deSJed Brown ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35db31f6deSJed Brown PetscFunctionReturn(0); 36db31f6deSJed Brown } 37db31f6deSJed Brown 38db31f6deSJed Brown #undef __FUNCT__ 39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage" 40db31f6deSJed Brown /*@C 41db31f6deSJed Brown PetscElementalFinalizePackage - Finalize Elemental package 42db31f6deSJed Brown 43db31f6deSJed Brown Logically Collective 44db31f6deSJed Brown 45db31f6deSJed Brown Level: developer 46db31f6deSJed Brown 47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48db31f6deSJed Brown @*/ 49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void) 50db31f6deSJed Brown { 51db31f6deSJed Brown 52db31f6deSJed Brown PetscFunctionBegin; 53db31f6deSJed Brown elem::Finalize(); 54db31f6deSJed Brown PetscFunctionReturn(0); 55db31f6deSJed Brown } 56db31f6deSJed Brown 57db31f6deSJed Brown #undef __FUNCT__ 58db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental" 59db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60db31f6deSJed Brown { 61db31f6deSJed Brown PetscErrorCode ierr; 62db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 63db31f6deSJed Brown PetscBool iascii; 64db31f6deSJed Brown 65db31f6deSJed Brown PetscFunctionBegin; 66db31f6deSJed Brown ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67db31f6deSJed Brown if (iascii) { 68db31f6deSJed Brown PetscViewerFormat format; 69db31f6deSJed Brown ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70db31f6deSJed Brown if (format == PETSC_VIEWER_ASCII_INFO) { 7179673f7bSHong Zhang /* call elemental viewing function */ 722d8adcc7SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 73ed667823SXuan Zhou ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 74ed667823SXuan Zhou ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 754fe7bbcaSHong Zhang if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 7679673f7bSHong Zhang /* call elemental viewing function */ 7780622e0cSXuan Zhou ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 784fe7bbcaSHong Zhang } 7979673f7bSHong Zhang 80db31f6deSJed Brown } else if (format == PETSC_VIEWER_DEFAULT) { 81db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 82db31f6deSJed Brown ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 83db31f6deSJed Brown a->emat->Print("Elemental matrix (cyclic ordering)"); 84db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 85834d3fecSHong Zhang if (A->factortype == MAT_FACTOR_NONE){ 86*61119200SXuan Zhou Mat Adense; 870022473aSHong Zhang ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 88*61119200SXuan Zhou ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 89*61119200SXuan Zhou ierr = MatView(Adense,viewer);CHKERRQ(ierr); 90*61119200SXuan Zhou ierr = MatDestroy(&Adense);CHKERRQ(ierr); 91834d3fecSHong Zhang } 92db31f6deSJed Brown } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 93d2daa67eSHong Zhang } else { 94d2daa67eSHong Zhang /* convert to aij/mpidense format and call MatView() */ 95*61119200SXuan Zhou Mat Adense; 96d2daa67eSHong Zhang ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 97*61119200SXuan Zhou ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 98*61119200SXuan Zhou ierr = MatView(Adense,viewer);CHKERRQ(ierr); 99*61119200SXuan Zhou ierr = MatDestroy(&Adense);CHKERRQ(ierr); 100d2daa67eSHong Zhang } 101db31f6deSJed Brown PetscFunctionReturn(0); 102db31f6deSJed Brown } 103db31f6deSJed Brown 104db31f6deSJed Brown #undef __FUNCT__ 105180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental" 10615767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 107180a43e4SHong Zhang { 10815767789SHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data; 10915767789SHong Zhang PetscMPIInt rank; 11015767789SHong Zhang 111180a43e4SHong Zhang PetscFunctionBegin; 11215767789SHong Zhang MPI_Comm_rank(((PetscObject)A)->comm,&rank); 11315767789SHong Zhang 11415767789SHong Zhang /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 11515767789SHong Zhang info->block_size = 1.0; /* ? */ 11615767789SHong Zhang 11715767789SHong Zhang if (flag == MAT_LOCAL) { 11815767789SHong Zhang info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 11915767789SHong Zhang info->nz_used = info->nz_allocated; 12015767789SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 12115767789SHong Zhang //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 12215767789SHong Zhang /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 12315767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 12415767789SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 12515767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 12615767789SHong Zhang info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 12715767789SHong Zhang info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 12815767789SHong Zhang //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 12915767789SHong Zhang //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 13015767789SHong Zhang } 13115767789SHong Zhang 13215767789SHong Zhang info->nz_unneeded = 0.0; 13315767789SHong Zhang info->assemblies = (double)A->num_ass; 13415767789SHong Zhang info->mallocs = 0; 13515767789SHong Zhang info->memory = ((PetscObject)A)->mem; 13615767789SHong Zhang info->fill_ratio_given = 0; /* determined by Elemental */ 13715767789SHong Zhang info->fill_ratio_needed = 0; 13815767789SHong Zhang info->factor_mallocs = 0; 139180a43e4SHong Zhang PetscFunctionReturn(0); 140180a43e4SHong Zhang } 141180a43e4SHong Zhang 142180a43e4SHong Zhang #undef __FUNCT__ 143db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental" 144e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 145db31f6deSJed Brown { 146db31f6deSJed Brown PetscErrorCode ierr; 147db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 148db31f6deSJed Brown PetscMPIInt rank; 149db31f6deSJed Brown PetscInt i,j,rrank,ridx,crank,cidx; 150db31f6deSJed Brown 151db31f6deSJed Brown PetscFunctionBegin; 152db31f6deSJed Brown ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 153db31f6deSJed Brown 154db31f6deSJed Brown const elem::Grid &grid = a->emat->Grid(); 155db31f6deSJed Brown for (i=0; i<nr; i++) { 156db31f6deSJed Brown PetscInt erow,ecol,elrow,elcol; 157db31f6deSJed Brown if (rows[i] < 0) continue; 158db31f6deSJed Brown P2RO(A,0,rows[i],&rrank,&ridx); 159db31f6deSJed Brown RO2E(A,0,rrank,ridx,&erow); 160db31f6deSJed Brown if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 161db31f6deSJed Brown for (j=0; j<nc; j++) { 162db31f6deSJed Brown if (cols[j] < 0) continue; 163db31f6deSJed Brown P2RO(A,1,cols[j],&crank,&cidx); 164db31f6deSJed Brown RO2E(A,1,crank,cidx,&ecol); 165db31f6deSJed Brown if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 166aae2c449SHong Zhang if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 167aae2c449SHong Zhang if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 168aae2c449SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 169e6dea9dbSXuan Zhou a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 170aae2c449SHong Zhang a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 171aae2c449SHong Zhang continue; 172ed36708cSHong Zhang } 173db31f6deSJed Brown elrow = erow / grid.MCSize(); 174db31f6deSJed Brown elcol = ecol / grid.MRSize(); 175db31f6deSJed Brown switch (imode) { 176e6dea9dbSXuan Zhou case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 177e6dea9dbSXuan Zhou case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 178db31f6deSJed Brown default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 179db31f6deSJed Brown } 180db31f6deSJed Brown } 181db31f6deSJed Brown } 182db31f6deSJed Brown PetscFunctionReturn(0); 183db31f6deSJed Brown } 184db31f6deSJed Brown 185db31f6deSJed Brown #undef __FUNCT__ 186db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental" 187db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 188db31f6deSJed Brown { 189db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 190db31f6deSJed Brown PetscErrorCode ierr; 191e6dea9dbSXuan Zhou const PetscElemScalar *x; 192e6dea9dbSXuan Zhou PetscElemScalar *y; 193df311e6cSXuan Zhou PetscElemScalar one = 1,zero = 0; 194db31f6deSJed Brown 195db31f6deSJed Brown PetscFunctionBegin; 196e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 197e6dea9dbSXuan Zhou ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 198db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 199df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 200df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 201db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 202db31f6deSJed Brown } 203e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 204e6dea9dbSXuan Zhou ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 205db31f6deSJed Brown PetscFunctionReturn(0); 206db31f6deSJed Brown } 207db31f6deSJed Brown 208db31f6deSJed Brown #undef __FUNCT__ 2099426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental" 2109426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 2119426833fSXuan Zhou { 2129426833fSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 2139426833fSXuan Zhou PetscErrorCode ierr; 214df311e6cSXuan Zhou const PetscElemScalar *x; 215df311e6cSXuan Zhou PetscElemScalar *y; 216e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 2179426833fSXuan Zhou 2189426833fSXuan Zhou PetscFunctionBegin; 219e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 220e6dea9dbSXuan Zhou ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 2219426833fSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 222df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 223df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 2249426833fSXuan Zhou elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 2259426833fSXuan Zhou } 226e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 227e6dea9dbSXuan Zhou ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 2289426833fSXuan Zhou PetscFunctionReturn(0); 2299426833fSXuan Zhou } 2309426833fSXuan Zhou 2319426833fSXuan Zhou #undef __FUNCT__ 232db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental" 233db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 234db31f6deSJed Brown { 235db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 236db31f6deSJed Brown PetscErrorCode ierr; 237df311e6cSXuan Zhou const PetscElemScalar *x; 238df311e6cSXuan Zhou PetscElemScalar *z; 239e6dea9dbSXuan Zhou PetscElemScalar one = 1; 240db31f6deSJed Brown 241db31f6deSJed Brown PetscFunctionBegin; 242db31f6deSJed Brown if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 243e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 244e6dea9dbSXuan Zhou ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 245db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 246df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 247df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 248db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 249db31f6deSJed Brown } 250e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 251e6dea9dbSXuan Zhou ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 252db31f6deSJed Brown PetscFunctionReturn(0); 253db31f6deSJed Brown } 254db31f6deSJed Brown 255db31f6deSJed Brown #undef __FUNCT__ 256e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental" 257e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 258e883f9d5SXuan Zhou { 259e883f9d5SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 260e883f9d5SXuan Zhou PetscErrorCode ierr; 261df311e6cSXuan Zhou const PetscElemScalar *x; 262df311e6cSXuan Zhou PetscElemScalar *z; 263e6dea9dbSXuan Zhou PetscElemScalar one = 1; 264e883f9d5SXuan Zhou 265e883f9d5SXuan Zhou PetscFunctionBegin; 266e883f9d5SXuan Zhou if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 267e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 268e6dea9dbSXuan Zhou ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 269e883f9d5SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 270df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 271df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 272e883f9d5SXuan Zhou elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 273e883f9d5SXuan Zhou } 274e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 275e6dea9dbSXuan Zhou ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 276e883f9d5SXuan Zhou PetscFunctionReturn(0); 277e883f9d5SXuan Zhou } 278e883f9d5SXuan Zhou 279e883f9d5SXuan Zhou #undef __FUNCT__ 2809a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental" 2819a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 282c1d1b975SXuan Zhou { 283c1d1b975SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 284c1d1b975SXuan Zhou Mat_Elemental *b = (Mat_Elemental*)B->data; 2859a9e8502SHong Zhang Mat_Elemental *c = (Mat_Elemental*)C->data; 286e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 287c1d1b975SXuan Zhou 288c1d1b975SXuan Zhou PetscFunctionBegin; 289aae2c449SHong Zhang { /* Scoping so that constructor is called before pointer is returned */ 290c1d1b975SXuan Zhou elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 291aae2c449SHong Zhang } 2929a9e8502SHong Zhang C->assembled = PETSC_TRUE; 2939a9e8502SHong Zhang PetscFunctionReturn(0); 2949a9e8502SHong Zhang } 2959a9e8502SHong Zhang 2969a9e8502SHong Zhang #undef __FUNCT__ 2979a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental" 2989a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 2999a9e8502SHong Zhang { 3009a9e8502SHong Zhang PetscErrorCode ierr; 3019a9e8502SHong Zhang Mat Ce; 3029a9e8502SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 3039a9e8502SHong Zhang 3049a9e8502SHong Zhang PetscFunctionBegin; 3059a9e8502SHong Zhang ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 3069a9e8502SHong Zhang ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 3079a9e8502SHong Zhang ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 3089a9e8502SHong Zhang ierr = MatSetUp(Ce);CHKERRQ(ierr); 3099a9e8502SHong Zhang *C = Ce; 3109a9e8502SHong Zhang PetscFunctionReturn(0); 3119a9e8502SHong Zhang } 3129a9e8502SHong Zhang 3139a9e8502SHong Zhang #undef __FUNCT__ 3149a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental" 3159a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 3169a9e8502SHong Zhang { 3179a9e8502SHong Zhang PetscErrorCode ierr; 3189a9e8502SHong Zhang 3199a9e8502SHong Zhang PetscFunctionBegin; 3209a9e8502SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 3219a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 3229a9e8502SHong Zhang ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 3239a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 3249a9e8502SHong Zhang } 3259a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 3269a9e8502SHong Zhang ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 3279a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 328c1d1b975SXuan Zhou PetscFunctionReturn(0); 329c1d1b975SXuan Zhou } 330c1d1b975SXuan Zhou 331c1d1b975SXuan Zhou #undef __FUNCT__ 332df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 333df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 334df311e6cSXuan Zhou { 335df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 336df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental*)B->data; 337df311e6cSXuan Zhou Mat_Elemental *c = (Mat_Elemental*)C->data; 338e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 339df311e6cSXuan Zhou 340df311e6cSXuan Zhou PetscFunctionBegin; 341df311e6cSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 342df311e6cSXuan Zhou elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 343df311e6cSXuan Zhou } 344df311e6cSXuan Zhou C->assembled = PETSC_TRUE; 345df311e6cSXuan Zhou PetscFunctionReturn(0); 346df311e6cSXuan Zhou } 347df311e6cSXuan Zhou 348df311e6cSXuan Zhou #undef __FUNCT__ 349df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 350df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 351df311e6cSXuan Zhou { 352df311e6cSXuan Zhou PetscErrorCode ierr; 353df311e6cSXuan Zhou Mat Ce; 354df311e6cSXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 355df311e6cSXuan Zhou 356df311e6cSXuan Zhou PetscFunctionBegin; 357df311e6cSXuan Zhou ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 358df311e6cSXuan Zhou ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 359df311e6cSXuan Zhou ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 360df311e6cSXuan Zhou ierr = MatSetUp(Ce);CHKERRQ(ierr); 361df311e6cSXuan Zhou *C = Ce; 362df311e6cSXuan Zhou PetscFunctionReturn(0); 363df311e6cSXuan Zhou } 364df311e6cSXuan Zhou 365df311e6cSXuan Zhou #undef __FUNCT__ 366df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental" 367df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 368df311e6cSXuan Zhou { 369df311e6cSXuan Zhou PetscErrorCode ierr; 370df311e6cSXuan Zhou 371df311e6cSXuan Zhou PetscFunctionBegin; 372df311e6cSXuan Zhou if (scall == MAT_INITIAL_MATRIX){ 373df311e6cSXuan Zhou ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 374df311e6cSXuan Zhou ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 375df311e6cSXuan Zhou ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 376df311e6cSXuan Zhou } 377df311e6cSXuan Zhou ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 378df311e6cSXuan Zhou ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 379df311e6cSXuan Zhou ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 380df311e6cSXuan Zhou PetscFunctionReturn(0); 381df311e6cSXuan Zhou } 382df311e6cSXuan Zhou 383df311e6cSXuan Zhou #undef __FUNCT__ 384*61119200SXuan Zhou #define __FUNCT__ "MatGetDiagonal_Elemental" 385*61119200SXuan Zhou static PetscErrorCode MatGetDiagonal_Elemental(Mat X,Vec D) 386*61119200SXuan Zhou { 387*61119200SXuan Zhou Mat_Elemental *x = (Mat_Elemental*)X->data; 388*61119200SXuan Zhou PetscElemScalar *d; 389*61119200SXuan Zhou PetscErrorCode ierr; 390*61119200SXuan Zhou 391*61119200SXuan Zhou PetscFunctionBegin; 392*61119200SXuan Zhou ierr = VecGetArray(D,(PetscScalar **)&d);CHKERRQ(ierr); 393*61119200SXuan Zhou elem::DistMatrix<PetscElemScalar,elem::MD,elem::STAR> de((X->rmap->N > X->cmap->N)?X->cmap->N:X->rmap->N,1,0,d,(X->rmap->N > X->cmap->N)?X->cmap->n:X->rmap->n,*x->grid); 394*61119200SXuan Zhou x->emat->GetDiagonal(de,0); 395*61119200SXuan Zhou ierr = VecRestoreArray(D,(PetscScalar **)&d);CHKERRQ(ierr); 396*61119200SXuan Zhou PetscFunctionReturn(0); 397*61119200SXuan Zhou } 398*61119200SXuan Zhou 399*61119200SXuan Zhou #undef __FUNCT__ 4004ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental" 401e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 40265b78793SXuan Zhou { 40365b78793SXuan Zhou Mat_Elemental *x = (Mat_Elemental*)X->data; 40465b78793SXuan Zhou 40565b78793SXuan Zhou PetscFunctionBegin; 406e6dea9dbSXuan Zhou elem::Scal((PetscElemScalar)a,*x->emat); 40765b78793SXuan Zhou PetscFunctionReturn(0); 40865b78793SXuan Zhou } 40965b78793SXuan Zhou 41065b78793SXuan Zhou #undef __FUNCT__ 4114ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental" 412e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 413e09a3074SHong Zhang { 414e09a3074SHong Zhang Mat_Elemental *x = (Mat_Elemental*)X->data; 415e09a3074SHong Zhang Mat_Elemental *y = (Mat_Elemental*)Y->data; 416e09a3074SHong Zhang 417e09a3074SHong Zhang PetscFunctionBegin; 418e6dea9dbSXuan Zhou elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 419e09a3074SHong Zhang PetscFunctionReturn(0); 420e09a3074SHong Zhang } 421e09a3074SHong Zhang 422ae844d54SHong Zhang #undef __FUNCT__ 423d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental" 424d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 425d6223691SXuan Zhou { 426d6223691SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 427d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 428d6223691SXuan Zhou 429d6223691SXuan Zhou PetscFunctionBegin; 430d6223691SXuan Zhou elem::Copy(*a->emat,*b->emat); 431d6223691SXuan Zhou PetscFunctionReturn(0); 432d6223691SXuan Zhou } 433d6223691SXuan Zhou 434d6223691SXuan Zhou #undef __FUNCT__ 435df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental" 436df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 437df311e6cSXuan Zhou { 438df311e6cSXuan Zhou Mat Be; 439df311e6cSXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 440df311e6cSXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 441df311e6cSXuan Zhou PetscErrorCode ierr; 442df311e6cSXuan Zhou 443df311e6cSXuan Zhou PetscFunctionBegin; 444df311e6cSXuan Zhou ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 445df311e6cSXuan Zhou ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 446df311e6cSXuan Zhou ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 447df311e6cSXuan Zhou ierr = MatSetUp(Be);CHKERRQ(ierr); 448df311e6cSXuan Zhou *B = Be; 449df311e6cSXuan Zhou if (op == MAT_COPY_VALUES) { 450df311e6cSXuan Zhou Mat_Elemental *b=(Mat_Elemental*)Be->data; 451df311e6cSXuan Zhou elem::Copy(*a->emat,*b->emat); 452df311e6cSXuan Zhou } 453df311e6cSXuan Zhou Be->assembled = PETSC_TRUE; 454df311e6cSXuan Zhou PetscFunctionReturn(0); 455df311e6cSXuan Zhou } 456df311e6cSXuan Zhou 457df311e6cSXuan Zhou #undef __FUNCT__ 458d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental" 459d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 460d6223691SXuan Zhou { 4613512f328SXuan Zhou /* Only out-of-place supported */ 4625262d616SXuan Zhou Mat Be; 4635262d616SXuan Zhou PetscErrorCode ierr; 4645262d616SXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 4654fe7bbcaSHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 466d6223691SXuan Zhou 467d6223691SXuan Zhou PetscFunctionBegin; 4685262d616SXuan Zhou if (reuse == MAT_INITIAL_MATRIX){ 4695262d616SXuan Zhou ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 4705262d616SXuan Zhou ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 4715262d616SXuan Zhou ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 4725262d616SXuan Zhou ierr = MatSetUp(Be);CHKERRQ(ierr); 4735262d616SXuan Zhou *B = Be; 4745262d616SXuan Zhou } 4754fe7bbcaSHong Zhang b = (Mat_Elemental*)Be->data; 4765262d616SXuan Zhou elem::Transpose(*a->emat,*b->emat); 4775262d616SXuan Zhou Be->assembled = PETSC_TRUE; 478d6223691SXuan Zhou PetscFunctionReturn(0); 479d6223691SXuan Zhou } 480d6223691SXuan Zhou 481d6223691SXuan Zhou #undef __FUNCT__ 482dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental" 483dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A) 484dfcb0403SXuan Zhou { 485dfcb0403SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 486dfcb0403SXuan Zhou 487dfcb0403SXuan Zhou PetscFunctionBegin; 488dfcb0403SXuan Zhou elem::Conjugate(*a->emat); 489dfcb0403SXuan Zhou PetscFunctionReturn(0); 490dfcb0403SXuan Zhou } 491dfcb0403SXuan Zhou 492dfcb0403SXuan Zhou #undef __FUNCT__ 4934a29722dSXuan Zhou #define __FUNCT__ "MatHermitianTranspose_Elemental" 4944a29722dSXuan Zhou static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 4954a29722dSXuan Zhou { 4964a29722dSXuan Zhou /* Only out-of-place supported */ 4974a29722dSXuan Zhou Mat Be; 4984a29722dSXuan Zhou PetscErrorCode ierr; 4994a29722dSXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 5004a29722dSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 5014a29722dSXuan Zhou 5024a29722dSXuan Zhou PetscFunctionBegin; 5034a29722dSXuan Zhou if (reuse == MAT_INITIAL_MATRIX){ 5044a29722dSXuan Zhou ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 5054a29722dSXuan Zhou ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 5064a29722dSXuan Zhou ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 5074a29722dSXuan Zhou ierr = MatSetUp(Be);CHKERRQ(ierr); 5084a29722dSXuan Zhou *B = Be; 5094a29722dSXuan Zhou } 5104a29722dSXuan Zhou b = (Mat_Elemental*)Be->data; 5114a29722dSXuan Zhou elem::Adjoint(*a->emat,*b->emat); 5124a29722dSXuan Zhou Be->assembled = PETSC_TRUE; 5134a29722dSXuan Zhou PetscFunctionReturn(0); 5144a29722dSXuan Zhou } 5154a29722dSXuan Zhou 5164a29722dSXuan Zhou #undef __FUNCT__ 5171f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental" 5181f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 5191f881ff8SXuan Zhou { 5201f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 5211f881ff8SXuan Zhou PetscErrorCode ierr; 522df311e6cSXuan Zhou PetscElemScalar *x; 5231f881ff8SXuan Zhou 5241f881ff8SXuan Zhou PetscFunctionBegin; 52545cf121fSXuan Zhou ierr = VecCopy(B,X);CHKERRQ(ierr); 526e6dea9dbSXuan Zhou ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 527df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 528df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 529fc54b460SXuan Zhou switch (A->factortype) { 530fc54b460SXuan Zhou case MAT_FACTOR_LU: 5311f881ff8SXuan Zhou if ((*a->pivot).AllocatedMemory()) { 5324b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 53345cf121fSXuan Zhou elem::Copy(xer,xe); 534fc54b460SXuan Zhou } else { 5354b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 53645cf121fSXuan Zhou elem::Copy(xer,xe); 5371f881ff8SXuan Zhou } 538fc54b460SXuan Zhou break; 539fc54b460SXuan Zhou case MAT_FACTOR_CHOLESKY: 540fc54b460SXuan Zhou elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 541fc54b460SXuan Zhou elem::Copy(xer,xe); 542fc54b460SXuan Zhou break; 543fc54b460SXuan Zhou default: 5444fe7bbcaSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 545fc54b460SXuan Zhou break; 5461f881ff8SXuan Zhou } 547e6dea9dbSXuan Zhou ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 5481f881ff8SXuan Zhou PetscFunctionReturn(0); 5491f881ff8SXuan Zhou } 5501f881ff8SXuan Zhou 5511f881ff8SXuan Zhou #undef __FUNCT__ 552df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental" 553df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 554df311e6cSXuan Zhou { 555df311e6cSXuan Zhou PetscErrorCode ierr; 556df311e6cSXuan Zhou 557df311e6cSXuan Zhou PetscFunctionBegin; 558df311e6cSXuan Zhou ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 5593d7f40dbSXuan Zhou ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 560df311e6cSXuan Zhou PetscFunctionReturn(0); 561df311e6cSXuan Zhou } 562df311e6cSXuan Zhou 563df311e6cSXuan Zhou #undef __FUNCT__ 564ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental" 565ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 566ae844d54SHong Zhang { 5671f0e42cfSHong Zhang Mat_Elemental *a=(Mat_Elemental*)A->data; 568d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 5691f0e42cfSHong Zhang Mat_Elemental *x=(Mat_Elemental*)X->data; 5701f0e42cfSHong Zhang 571ae844d54SHong Zhang PetscFunctionBegin; 572d6223691SXuan Zhou elem::Copy(*b->emat,*x->emat); 573fc54b460SXuan Zhou switch (A->factortype) { 574fc54b460SXuan Zhou case MAT_FACTOR_LU: 575d6223691SXuan Zhou if ((*a->pivot).AllocatedMemory()) { 5764b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 577fc54b460SXuan Zhou } else { 5784b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 579d6223691SXuan Zhou } 580fc54b460SXuan Zhou break; 581fc54b460SXuan Zhou case MAT_FACTOR_CHOLESKY: 582fc54b460SXuan Zhou elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 583fc54b460SXuan Zhou break; 584fc54b460SXuan Zhou default: 5854fe7bbcaSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 586fc54b460SXuan Zhou break; 587fc54b460SXuan Zhou } 588ae844d54SHong Zhang PetscFunctionReturn(0); 589ae844d54SHong Zhang } 590ae844d54SHong Zhang 591ae844d54SHong Zhang #undef __FUNCT__ 592ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental" 593ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 594ae844d54SHong Zhang { 5957c920d81SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 5967c920d81SXuan Zhou 597ae844d54SHong Zhang PetscFunctionBegin; 598d6223691SXuan Zhou if (info->dtcol){ 5997c920d81SXuan Zhou elem::LU(*a->emat,*a->pivot); 6001293973dSHong Zhang } else { 601d6223691SXuan Zhou elem::LU(*a->emat); 602d6223691SXuan Zhou } 6031293973dSHong Zhang A->factortype = MAT_FACTOR_LU; 604834d3fecSHong Zhang A->assembled = PETSC_TRUE; 605ae844d54SHong Zhang PetscFunctionReturn(0); 606ae844d54SHong Zhang } 607ae844d54SHong Zhang 608d7c3f9d8SHong Zhang #undef __FUNCT__ 609d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental" 610d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 611d7c3f9d8SHong Zhang { 612d7c3f9d8SHong Zhang PetscErrorCode ierr; 613d7c3f9d8SHong Zhang 614d7c3f9d8SHong Zhang PetscFunctionBegin; 615d7c3f9d8SHong Zhang ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 616d7c3f9d8SHong Zhang ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 617d7c3f9d8SHong Zhang PetscFunctionReturn(0); 618d7c3f9d8SHong Zhang } 619d7c3f9d8SHong Zhang 620d7c3f9d8SHong Zhang #undef __FUNCT__ 621d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 622d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 623d7c3f9d8SHong Zhang { 624d7c3f9d8SHong Zhang PetscFunctionBegin; 625d7c3f9d8SHong Zhang /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 626d7c3f9d8SHong Zhang PetscFunctionReturn(0); 627d7c3f9d8SHong Zhang } 628d7c3f9d8SHong Zhang 62945cf121fSXuan Zhou #undef __FUNCT__ 63045cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental" 63145cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 63245cf121fSXuan Zhou { 63345cf121fSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 634df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 63545cf121fSXuan Zhou 63645cf121fSXuan Zhou PetscFunctionBegin; 637c9fc186eSXuan Zhou elem::Cholesky(elem::UPPER,*a->emat); 638fc54b460SXuan Zhou A->factortype = MAT_FACTOR_CHOLESKY; 639834d3fecSHong Zhang A->assembled = PETSC_TRUE; 64045cf121fSXuan Zhou PetscFunctionReturn(0); 64145cf121fSXuan Zhou } 64245cf121fSXuan Zhou 64379673f7bSHong Zhang #undef __FUNCT__ 64479673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 64579673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 64679673f7bSHong Zhang { 647cb76c1d8SXuan Zhou PetscErrorCode ierr; 648cb76c1d8SXuan Zhou 649cb76c1d8SXuan Zhou PetscFunctionBegin; 650cb76c1d8SXuan Zhou ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 651cb76c1d8SXuan Zhou ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 652cb76c1d8SXuan Zhou PetscFunctionReturn(0); 65379673f7bSHong Zhang } 654cb76c1d8SXuan Zhou 65579673f7bSHong Zhang #undef __FUNCT__ 65679673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 65779673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 65879673f7bSHong Zhang { 65979673f7bSHong Zhang PetscFunctionBegin; 66079673f7bSHong Zhang /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 66179673f7bSHong Zhang PetscFunctionReturn(0); 66279673f7bSHong Zhang } 66379673f7bSHong Zhang 66415767789SHong Zhang EXTERN_C_BEGIN 6651293973dSHong Zhang #undef __FUNCT__ 66615767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 66715767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 66815767789SHong Zhang { 66915767789SHong Zhang PetscFunctionBegin; 67015767789SHong Zhang *type = MATSOLVERELEMENTAL; 67115767789SHong Zhang PetscFunctionReturn(0); 67215767789SHong Zhang } 67315767789SHong Zhang EXTERN_C_END 67415767789SHong Zhang 67515767789SHong Zhang EXTERN_C_BEGIN 67615767789SHong Zhang #undef __FUNCT__ 67715767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental" 67815767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 6791293973dSHong Zhang { 6801293973dSHong Zhang Mat B; 6811293973dSHong Zhang PetscErrorCode ierr; 6821293973dSHong Zhang 6831293973dSHong Zhang PetscFunctionBegin; 6841293973dSHong Zhang /* Create the factorization matrix */ 6851293973dSHong Zhang ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 6861293973dSHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 6871293973dSHong Zhang ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 6881293973dSHong Zhang ierr = MatSetUp(B);CHKERRQ(ierr); 6891293973dSHong Zhang B->factortype = ftype; 69015767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 6911293973dSHong Zhang *F = B; 6921293973dSHong Zhang PetscFunctionReturn(0); 6931293973dSHong Zhang } 69415767789SHong Zhang EXTERN_C_END 6951293973dSHong Zhang 6961f881ff8SXuan Zhou #undef __FUNCT__ 6971f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental" 6981f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 6991f881ff8SXuan Zhou { 7001f881ff8SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 7011f881ff8SXuan Zhou 7021f881ff8SXuan Zhou PetscFunctionBegin; 7031f881ff8SXuan Zhou switch (type){ 7041f881ff8SXuan Zhou case NORM_1: 7051f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 7061f881ff8SXuan Zhou break; 7071f881ff8SXuan Zhou case NORM_FROBENIUS: 7081f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 7091f881ff8SXuan Zhou break; 7101f881ff8SXuan Zhou case NORM_INFINITY: 7111f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 7121f881ff8SXuan Zhou break; 7131f881ff8SXuan Zhou default: 7141f881ff8SXuan Zhou printf("Error: unsupported norm type!\n"); 7151f881ff8SXuan Zhou } 7161f881ff8SXuan Zhou PetscFunctionReturn(0); 7171f881ff8SXuan Zhou } 7181f881ff8SXuan Zhou 7195262d616SXuan Zhou #undef __FUNCT__ 7205262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental" 7215262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A) 7225262d616SXuan Zhou { 7235262d616SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 7245262d616SXuan Zhou 7255262d616SXuan Zhou PetscFunctionBegin; 7265262d616SXuan Zhou elem::Zero(*a->emat); 7275262d616SXuan Zhou PetscFunctionReturn(0); 7285262d616SXuan Zhou } 7295262d616SXuan Zhou 7301293973dSHong Zhang EXTERN_C_BEGIN 731e09a3074SHong Zhang #undef __FUNCT__ 732db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental" 733db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 734db31f6deSJed Brown { 735db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 736db31f6deSJed Brown PetscErrorCode ierr; 737db31f6deSJed Brown PetscInt i,m,shift,stride,*idx; 738db31f6deSJed Brown 739db31f6deSJed Brown PetscFunctionBegin; 740db31f6deSJed Brown if (rows) { 741db31f6deSJed Brown m = a->emat->LocalHeight(); 742db31f6deSJed Brown shift = a->emat->ColShift(); 743db31f6deSJed Brown stride = a->emat->ColStride(); 744db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 745db31f6deSJed Brown for (i=0; i<m; i++) { 746db31f6deSJed Brown PetscInt rank,offset; 747db31f6deSJed Brown E2RO(A,0,shift+i*stride,&rank,&offset); 748db31f6deSJed Brown RO2P(A,0,rank,offset,&idx[i]); 749db31f6deSJed Brown } 750db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 751db31f6deSJed Brown } 752db31f6deSJed Brown if (cols) { 753db31f6deSJed Brown m = a->emat->LocalWidth(); 754db31f6deSJed Brown shift = a->emat->RowShift(); 755db31f6deSJed Brown stride = a->emat->RowStride(); 756db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 757db31f6deSJed Brown for (i=0; i<m; i++) { 758db31f6deSJed Brown PetscInt rank,offset; 759db31f6deSJed Brown E2RO(A,1,shift+i*stride,&rank,&offset); 760db31f6deSJed Brown RO2P(A,1,rank,offset,&idx[i]); 761db31f6deSJed Brown } 762db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 763db31f6deSJed Brown } 764db31f6deSJed Brown PetscFunctionReturn(0); 765db31f6deSJed Brown } 7661293973dSHong Zhang EXTERN_C_END 767db31f6deSJed Brown 768db31f6deSJed Brown #undef __FUNCT__ 7692ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense" 7702ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B) 771af295397SXuan Zhou { 7722ef0cf24SXuan Zhou Mat Bmpi; 773af295397SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 774af295397SXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 7752ef0cf24SXuan Zhou PetscErrorCode ierr; 7762ef0cf24SXuan Zhou PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 777df311e6cSXuan Zhou PetscElemScalar v; 778af295397SXuan Zhou 779af295397SXuan Zhou PetscFunctionBegin; 780c4ad791aSXuan Zhou if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 781c4ad791aSXuan Zhou SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 782c4ad791aSXuan Zhou } 783af295397SXuan Zhou ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 784af295397SXuan Zhou ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 7852ef0cf24SXuan Zhou ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 786af295397SXuan Zhou ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 7872ef0cf24SXuan Zhou ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 7882ef0cf24SXuan Zhou for (i=0; i<nrows; i++) { 7892ef0cf24SXuan Zhou PetscInt erow,ecol; 7902ef0cf24SXuan Zhou P2RO(A,0,i,&rrank,&ridx); 7912ef0cf24SXuan Zhou RO2E(A,0,rrank,ridx,&erow); 7922ef0cf24SXuan Zhou if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 7932ef0cf24SXuan Zhou for (j=0; j<ncols; j++) { 7942ef0cf24SXuan Zhou P2RO(A,1,j,&crank,&cidx); 7952ef0cf24SXuan Zhou RO2E(A,1,crank,cidx,&ecol); 7962ef0cf24SXuan Zhou if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 7972ef0cf24SXuan Zhou v = a->emat->Get(erow,ecol); 798e6dea9dbSXuan Zhou ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 7992ef0cf24SXuan Zhou } 8002ef0cf24SXuan Zhou } 801af295397SXuan Zhou ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 802af295397SXuan Zhou ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 803c4ad791aSXuan Zhou if (reuse == MAT_REUSE_MATRIX) { 804c4ad791aSXuan Zhou ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 805c4ad791aSXuan Zhou } else { 806c4ad791aSXuan Zhou *B = Bmpi; 807c4ad791aSXuan Zhou } 808af295397SXuan Zhou PetscFunctionReturn(0); 809af295397SXuan Zhou } 810af295397SXuan Zhou 811af295397SXuan Zhou #undef __FUNCT__ 812db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental" 813db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A) 814db31f6deSJed Brown { 815db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 816db31f6deSJed Brown PetscErrorCode ierr; 8175e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 8185e9f5b67SHong Zhang PetscBool flg; 8195e9f5b67SHong Zhang MPI_Comm icomm; 820db31f6deSJed Brown 821db31f6deSJed Brown PetscFunctionBegin; 822c1ee1e62SHong Zhang a->interface->Detach(); 823aae2c449SHong Zhang delete a->interface; 824aae2c449SHong Zhang delete a->esubmat; 825db31f6deSJed Brown delete a->emat; 8265e9f5b67SHong Zhang 827180a43e4SHong Zhang elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 8285e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 8295e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 8305e9f5b67SHong Zhang if (--commgrid->grid_refct == 0) { 8315e9f5b67SHong Zhang delete commgrid->grid; 8325e9f5b67SHong Zhang ierr = PetscFree(commgrid);CHKERRQ(ierr); 8335e9f5b67SHong Zhang } 8345e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 835db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 8361293973dSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 83715767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 838db31f6deSJed Brown ierr = PetscFree(A->data);CHKERRQ(ierr); 839db31f6deSJed Brown PetscFunctionReturn(0); 840db31f6deSJed Brown } 841db31f6deSJed Brown 842db31f6deSJed Brown #undef __FUNCT__ 843db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental" 844db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A) 845db31f6deSJed Brown { 846db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 847db31f6deSJed Brown PetscErrorCode ierr; 848db31f6deSJed Brown PetscMPIInt rsize,csize; 849db31f6deSJed Brown 850db31f6deSJed Brown PetscFunctionBegin; 851db31f6deSJed Brown ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 852db31f6deSJed Brown ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 853db31f6deSJed Brown 854db31f6deSJed Brown a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 855db31f6deSJed Brown elem::Zero(*a->emat); 856db31f6deSJed Brown 857db31f6deSJed Brown ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 858db31f6deSJed Brown ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 859db31f6deSJed Brown if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 860db31f6deSJed Brown a->commsize = rsize; 861db31f6deSJed Brown a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 862db31f6deSJed Brown a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 863db31f6deSJed Brown a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 864db31f6deSJed Brown a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 865db31f6deSJed Brown PetscFunctionReturn(0); 866db31f6deSJed Brown } 867db31f6deSJed Brown 868aae2c449SHong Zhang #undef __FUNCT__ 869aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental" 870aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 871aae2c449SHong Zhang { 872aae2c449SHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data; 873aae2c449SHong Zhang 874aae2c449SHong Zhang PetscFunctionBegin; 875aae2c449SHong Zhang a->interface->Detach(); 876aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 877aae2c449SHong Zhang PetscFunctionReturn(0); 878aae2c449SHong Zhang } 879aae2c449SHong Zhang 880aae2c449SHong Zhang #undef __FUNCT__ 881aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental" 882aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 883aae2c449SHong Zhang { 884aae2c449SHong Zhang PetscFunctionBegin; 885aae2c449SHong Zhang /* Currently does nothing */ 886aae2c449SHong Zhang PetscFunctionReturn(0); 887aae2c449SHong Zhang } 888aae2c449SHong Zhang 88940d92e34SHong Zhang /* -------------------------------------------------------------------*/ 89040d92e34SHong Zhang static struct _MatOps MatOps_Values = { 89140d92e34SHong Zhang MatSetValues_Elemental, 89240d92e34SHong Zhang 0, 89340d92e34SHong Zhang 0, 89440d92e34SHong Zhang MatMult_Elemental, 89540d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental, 8969426833fSXuan Zhou MatMultTranspose_Elemental, 897e883f9d5SXuan Zhou MatMultTransposeAdd_Elemental, 89840d92e34SHong Zhang MatSolve_Elemental, 899df311e6cSXuan Zhou MatSolveAdd_Elemental, 90040d92e34SHong Zhang 0, //MatSolveTranspose_Elemental, 90140d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental, 90240d92e34SHong Zhang MatLUFactor_Elemental, 90340d92e34SHong Zhang MatCholeskyFactor_Elemental, 90440d92e34SHong Zhang 0, 90540d92e34SHong Zhang MatTranspose_Elemental, 90640d92e34SHong Zhang /*15*/ MatGetInfo_Elemental, 90740d92e34SHong Zhang 0, 908*61119200SXuan Zhou MatGetDiagonal_Elemental, 9092adf0be3SHong Zhang 0, //MatDiagonalScale_Elemental,? 91040d92e34SHong Zhang MatNorm_Elemental, 91140d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental, 91240d92e34SHong Zhang MatAssemblyEnd_Elemental, 91340d92e34SHong Zhang 0, //MatSetOption_Elemental, 91440d92e34SHong Zhang MatZeroEntries_Elemental, 91540d92e34SHong Zhang /*24*/ 0, 91640d92e34SHong Zhang MatLUFactorSymbolic_Elemental, 91740d92e34SHong Zhang MatLUFactorNumeric_Elemental, 91840d92e34SHong Zhang MatCholeskyFactorSymbolic_Elemental, 91940d92e34SHong Zhang MatCholeskyFactorNumeric_Elemental, 92040d92e34SHong Zhang /*29*/ MatSetUp_Elemental, 92140d92e34SHong Zhang 0, 92240d92e34SHong Zhang 0, 92340d92e34SHong Zhang 0, 92440d92e34SHong Zhang 0, 925df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental, 92640d92e34SHong Zhang 0, 92740d92e34SHong Zhang 0, 92840d92e34SHong Zhang 0, 92940d92e34SHong Zhang 0, 93040d92e34SHong Zhang /*39*/ MatAXPY_Elemental, 93140d92e34SHong Zhang 0, 93240d92e34SHong Zhang 0, 93340d92e34SHong Zhang 0, 93440d92e34SHong Zhang MatCopy_Elemental, 93540d92e34SHong Zhang /*44*/ 0, 93640d92e34SHong Zhang MatScale_Elemental, 93740d92e34SHong Zhang 0, 93840d92e34SHong Zhang 0, 93940d92e34SHong Zhang 0, 94040d92e34SHong Zhang /*49*/ 0, 94140d92e34SHong Zhang 0, 94240d92e34SHong Zhang 0, 94340d92e34SHong Zhang 0, 94440d92e34SHong Zhang 0, 94540d92e34SHong Zhang /*54*/ 0, 94640d92e34SHong Zhang 0, 94740d92e34SHong Zhang 0, 94840d92e34SHong Zhang 0, 94940d92e34SHong Zhang 0, 95040d92e34SHong Zhang /*59*/ 0, 95140d92e34SHong Zhang MatDestroy_Elemental, 95240d92e34SHong Zhang MatView_Elemental, 95340d92e34SHong Zhang 0, 95440d92e34SHong Zhang 0, 95540d92e34SHong Zhang /*64*/ 0, 95640d92e34SHong Zhang 0, 95740d92e34SHong Zhang 0, 95840d92e34SHong Zhang 0, 95940d92e34SHong Zhang 0, 96040d92e34SHong Zhang /*69*/ 0, 96140d92e34SHong Zhang 0, 9622ef0cf24SXuan Zhou MatConvert_Elemental_Dense, 96340d92e34SHong Zhang 0, 96440d92e34SHong Zhang 0, 96540d92e34SHong Zhang /*74*/ 0, 96640d92e34SHong Zhang 0, 96740d92e34SHong Zhang 0, 96840d92e34SHong Zhang 0, 96940d92e34SHong Zhang 0, 97040d92e34SHong Zhang /*79*/ 0, 97140d92e34SHong Zhang 0, 97240d92e34SHong Zhang 0, 97340d92e34SHong Zhang 0, 97440d92e34SHong Zhang 0, 97540d92e34SHong Zhang /*84*/ 0, 97640d92e34SHong Zhang 0, 97740d92e34SHong Zhang 0, 97840d92e34SHong Zhang 0, 97940d92e34SHong Zhang 0, 98040d92e34SHong Zhang /*89*/ MatMatMult_Elemental, 98140d92e34SHong Zhang MatMatMultSymbolic_Elemental, 98240d92e34SHong Zhang MatMatMultNumeric_Elemental, 98340d92e34SHong Zhang 0, 98440d92e34SHong Zhang 0, 98540d92e34SHong Zhang /*94*/ 0, 986df311e6cSXuan Zhou MatMatTransposeMult_Elemental, 987df311e6cSXuan Zhou MatMatTransposeMultSymbolic_Elemental, 988df311e6cSXuan Zhou MatMatTransposeMultNumeric_Elemental, 98940d92e34SHong Zhang 0, 99040d92e34SHong Zhang /*99*/ 0, 99140d92e34SHong Zhang 0, 99240d92e34SHong Zhang 0, 993dfcb0403SXuan Zhou MatConjugate_Elemental, 99440d92e34SHong Zhang 0, 99540d92e34SHong Zhang /*104*/0, 99640d92e34SHong Zhang 0, 99740d92e34SHong Zhang 0, 99840d92e34SHong Zhang 0, 99940d92e34SHong Zhang 0, 100040d92e34SHong Zhang /*109*/MatMatSolve_Elemental, 100140d92e34SHong Zhang 0, 100240d92e34SHong Zhang 0, 100340d92e34SHong Zhang 0, 100440d92e34SHong Zhang 0, 100540d92e34SHong Zhang /*114*/0, 100640d92e34SHong Zhang 0, 100740d92e34SHong Zhang 0, 100840d92e34SHong Zhang 0, 100940d92e34SHong Zhang 0, 101040d92e34SHong Zhang /*119*/0, 10114a29722dSXuan Zhou MatHermitianTranspose_Elemental, 101240d92e34SHong Zhang 0, 101340d92e34SHong Zhang 0, 101440d92e34SHong Zhang 0, 101540d92e34SHong Zhang /*124*/0, 101640d92e34SHong Zhang 0, 101740d92e34SHong Zhang 0, 101840d92e34SHong Zhang 0, 101940d92e34SHong Zhang 0, 102040d92e34SHong Zhang /*129*/0, 102140d92e34SHong Zhang 0, 102240d92e34SHong Zhang 0, 102340d92e34SHong Zhang 0, 102440d92e34SHong Zhang 0, 102540d92e34SHong Zhang /*134*/0, 102640d92e34SHong Zhang 0, 102740d92e34SHong Zhang 0, 102840d92e34SHong Zhang 0, 102940d92e34SHong Zhang 0 103040d92e34SHong Zhang }; 103140d92e34SHong Zhang 1032ed36708cSHong Zhang /*MC 1033ed36708cSHong Zhang MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1034ed36708cSHong Zhang 1035ed36708cSHong Zhang Options Database Keys: 1036ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1037ed36708cSHong Zhang 1038ed36708cSHong Zhang Level: beginner 1039ed36708cSHong Zhang 1040ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental() 1041ed36708cSHong Zhang M*/ 10424a29722dSXuan Zhou 1043db31f6deSJed Brown #undef __FUNCT__ 1044db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental" 1045db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1046db31f6deSJed Brown { 1047db31f6deSJed Brown Mat_Elemental *a; 1048db31f6deSJed Brown PetscErrorCode ierr; 1049ed667823SXuan Zhou PetscBool flg,flg1,flg2; 10505e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 10515e9f5b67SHong Zhang MPI_Comm icomm; 1052ed667823SXuan Zhou PetscInt optv1,optv2; 1053db31f6deSJed Brown 1054db31f6deSJed Brown PetscFunctionBegin; 1055db31f6deSJed Brown ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 105640d92e34SHong Zhang ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 105740d92e34SHong Zhang A->insertmode = NOT_SET_VALUES; 1058db31f6deSJed Brown 1059db31f6deSJed Brown ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1060db31f6deSJed Brown A->data = (void*)a; 1061db31f6deSJed Brown 1062db31f6deSJed Brown /* Set up the elemental matrix */ 1063db31f6deSJed Brown elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1064ed667823SXuan Zhou ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 10655e9f5b67SHong Zhang 10665e9f5b67SHong Zhang /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 10675e9f5b67SHong Zhang if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1068180a43e4SHong Zhang ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 10695e9f5b67SHong Zhang } 10705e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 10715e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 10725e9f5b67SHong Zhang if (!flg) { 10735e9f5b67SHong Zhang ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 10742ef0cf24SXuan Zhou ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 10752ef0cf24SXuan Zhou ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1076ed667823SXuan Zhou if (flg1 || flg2) { 1077ed667823SXuan Zhou if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 10782ef0cf24SXuan Zhou SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1079ed667823SXuan Zhou } 10802adf0be3SHong Zhang commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */ 10812ef0cf24SXuan Zhou } else { 10822adf0be3SHong Zhang commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1083ed667823SXuan Zhou } 10845e9f5b67SHong Zhang commgrid->grid_refct = 1; 10855e9f5b67SHong Zhang ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 10865e9f5b67SHong Zhang } else { 10875e9f5b67SHong Zhang commgrid->grid_refct++; 10885e9f5b67SHong Zhang } 10895e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 10905e9f5b67SHong Zhang a->grid = commgrid->grid; 1091df311e6cSXuan Zhou a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1092df311e6cSXuan Zhou a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1093df311e6cSXuan Zhou a->interface = new elem::AxpyInterface<PetscElemScalar>; 10947c920d81SXuan Zhou a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1095db31f6deSJed Brown 1096db31f6deSJed Brown /* build cache for off array entries formed */ 1097aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1098bafd5131SHong Zhang 1099db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 110015767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1101db31f6deSJed Brown 1102db31f6deSJed Brown ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1103ed667823SXuan Zhou PetscOptionsEnd(); 1104db31f6deSJed Brown PetscFunctionReturn(0); 1105db31f6deSJed Brown } 11064a29722dSXuan Zhou 1107