xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 6111920086683d1222d035be8ecd53e764ae7cfc)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
17db31f6deSJed Brown .  path - the dynamic library path or PETSC_NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57db31f6deSJed Brown #undef __FUNCT__
58db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
59db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
60db31f6deSJed Brown {
61db31f6deSJed Brown   PetscErrorCode ierr;
62db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
63db31f6deSJed Brown   PetscBool      iascii;
64db31f6deSJed Brown 
65db31f6deSJed Brown   PetscFunctionBegin;
66db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
67db31f6deSJed Brown   if (iascii) {
68db31f6deSJed Brown     PetscViewerFormat format;
69db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
70db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
7179673f7bSHong Zhang       /* call elemental viewing function */
722d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
73ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
74ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
754fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
7679673f7bSHong Zhang         /* call elemental viewing function */
7780622e0cSXuan Zhou         ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr);
784fe7bbcaSHong Zhang       }
7979673f7bSHong Zhang 
80db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
81db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
82db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
83db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
84db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
85834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
86*61119200SXuan Zhou         Mat Adense;
870022473aSHong Zhang         ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
88*61119200SXuan Zhou         ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
89*61119200SXuan Zhou         ierr = MatView(Adense,viewer);CHKERRQ(ierr);
90*61119200SXuan Zhou         ierr = MatDestroy(&Adense);CHKERRQ(ierr);
91834d3fecSHong Zhang       }
92db31f6deSJed Brown     } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format");
93d2daa67eSHong Zhang   } else {
94d2daa67eSHong Zhang     /* convert to aij/mpidense format and call MatView() */
95*61119200SXuan Zhou     Mat Adense;
96d2daa67eSHong Zhang     ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
97*61119200SXuan Zhou     ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
98*61119200SXuan Zhou     ierr = MatView(Adense,viewer);CHKERRQ(ierr);
99*61119200SXuan Zhou     ierr = MatDestroy(&Adense);CHKERRQ(ierr);
100d2daa67eSHong Zhang   }
101db31f6deSJed Brown   PetscFunctionReturn(0);
102db31f6deSJed Brown }
103db31f6deSJed Brown 
104db31f6deSJed Brown #undef __FUNCT__
105180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
10615767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
107180a43e4SHong Zhang {
10815767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
10915767789SHong Zhang   PetscMPIInt    rank;
11015767789SHong Zhang 
111180a43e4SHong Zhang   PetscFunctionBegin;
11215767789SHong Zhang   MPI_Comm_rank(((PetscObject)A)->comm,&rank);
11315767789SHong Zhang 
11415767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
11515767789SHong Zhang   info->block_size     = 1.0; /* ? */
11615767789SHong Zhang 
11715767789SHong Zhang   if (flag == MAT_LOCAL) {
11815767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
11915767789SHong Zhang     info->nz_used        = info->nz_allocated;
12015767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
12115767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
12215767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
12315767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
12415767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
12515767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
12615767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
12715767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
12815767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
12915767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
13015767789SHong Zhang   }
13115767789SHong Zhang 
13215767789SHong Zhang   info->nz_unneeded       = 0.0;
13315767789SHong Zhang   info->assemblies        = (double)A->num_ass;
13415767789SHong Zhang   info->mallocs           = 0;
13515767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
13615767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
13715767789SHong Zhang   info->fill_ratio_needed = 0;
13815767789SHong Zhang   info->factor_mallocs    = 0;
139180a43e4SHong Zhang   PetscFunctionReturn(0);
140180a43e4SHong Zhang }
141180a43e4SHong Zhang 
142180a43e4SHong Zhang #undef __FUNCT__
143db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
144e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
145db31f6deSJed Brown {
146db31f6deSJed Brown   PetscErrorCode ierr;
147db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
148db31f6deSJed Brown   PetscMPIInt    rank;
149db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
150db31f6deSJed Brown 
151db31f6deSJed Brown   PetscFunctionBegin;
152db31f6deSJed Brown   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
153db31f6deSJed Brown 
154db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
155db31f6deSJed Brown   for (i=0; i<nr; i++) {
156db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
157db31f6deSJed Brown     if (rows[i] < 0) continue;
158db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
159db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
160db31f6deSJed Brown     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation");
161db31f6deSJed Brown     for (j=0; j<nc; j++) {
162db31f6deSJed Brown       if (cols[j] < 0) continue;
163db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
164db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
165db31f6deSJed Brown       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation");
166aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
167aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
168aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
169e6dea9dbSXuan Zhou         a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]);
170aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
171aae2c449SHong Zhang         continue;
172ed36708cSHong Zhang       }
173db31f6deSJed Brown       elrow = erow / grid.MCSize();
174db31f6deSJed Brown       elcol = ecol / grid.MRSize();
175db31f6deSJed Brown       switch (imode) {
176e6dea9dbSXuan Zhou       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
177e6dea9dbSXuan Zhou       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
178db31f6deSJed Brown       default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
179db31f6deSJed Brown       }
180db31f6deSJed Brown     }
181db31f6deSJed Brown   }
182db31f6deSJed Brown   PetscFunctionReturn(0);
183db31f6deSJed Brown }
184db31f6deSJed Brown 
185db31f6deSJed Brown #undef __FUNCT__
186db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
187db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
188db31f6deSJed Brown {
189db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
190db31f6deSJed Brown   PetscErrorCode        ierr;
191e6dea9dbSXuan Zhou   const PetscElemScalar *x;
192e6dea9dbSXuan Zhou   PetscElemScalar       *y;
193df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
194db31f6deSJed Brown 
195db31f6deSJed Brown   PetscFunctionBegin;
196e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
197e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
198db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
199df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
200df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
201db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
202db31f6deSJed Brown   }
203e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
204e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
205db31f6deSJed Brown   PetscFunctionReturn(0);
206db31f6deSJed Brown }
207db31f6deSJed Brown 
208db31f6deSJed Brown #undef __FUNCT__
2099426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2109426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2119426833fSXuan Zhou {
2129426833fSXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
2139426833fSXuan Zhou   PetscErrorCode        ierr;
214df311e6cSXuan Zhou   const PetscElemScalar *x;
215df311e6cSXuan Zhou   PetscElemScalar       *y;
216e6dea9dbSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
2179426833fSXuan Zhou 
2189426833fSXuan Zhou   PetscFunctionBegin;
219e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
220e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2219426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
222df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
223df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2249426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2259426833fSXuan Zhou   }
226e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
227e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2289426833fSXuan Zhou   PetscFunctionReturn(0);
2299426833fSXuan Zhou }
2309426833fSXuan Zhou 
2319426833fSXuan Zhou #undef __FUNCT__
232db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
233db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
234db31f6deSJed Brown {
235db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
236db31f6deSJed Brown   PetscErrorCode        ierr;
237df311e6cSXuan Zhou   const PetscElemScalar *x;
238df311e6cSXuan Zhou   PetscElemScalar       *z;
239e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
240db31f6deSJed Brown 
241db31f6deSJed Brown   PetscFunctionBegin;
242db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
243e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
244e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
245db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
246df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
247df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
248db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
249db31f6deSJed Brown   }
250e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
251e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
252db31f6deSJed Brown   PetscFunctionReturn(0);
253db31f6deSJed Brown }
254db31f6deSJed Brown 
255db31f6deSJed Brown #undef __FUNCT__
256e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
257e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
258e883f9d5SXuan Zhou {
259e883f9d5SXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
260e883f9d5SXuan Zhou   PetscErrorCode        ierr;
261df311e6cSXuan Zhou   const PetscElemScalar *x;
262df311e6cSXuan Zhou   PetscElemScalar       *z;
263e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
264e883f9d5SXuan Zhou 
265e883f9d5SXuan Zhou   PetscFunctionBegin;
266e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
267e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
268e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
269e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
270df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
271df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
272e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
273e883f9d5SXuan Zhou   }
274e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
275e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
276e883f9d5SXuan Zhou   PetscFunctionReturn(0);
277e883f9d5SXuan Zhou }
278e883f9d5SXuan Zhou 
279e883f9d5SXuan Zhou #undef __FUNCT__
2809a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
2819a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
282c1d1b975SXuan Zhou {
283c1d1b975SXuan Zhou   Mat_Elemental    *a = (Mat_Elemental*)A->data;
284c1d1b975SXuan Zhou   Mat_Elemental    *b = (Mat_Elemental*)B->data;
2859a9e8502SHong Zhang   Mat_Elemental    *c = (Mat_Elemental*)C->data;
286e6dea9dbSXuan Zhou   PetscElemScalar  one = 1,zero = 0;
287c1d1b975SXuan Zhou 
288c1d1b975SXuan Zhou   PetscFunctionBegin;
289aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
290c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
291aae2c449SHong Zhang   }
2929a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
2939a9e8502SHong Zhang   PetscFunctionReturn(0);
2949a9e8502SHong Zhang }
2959a9e8502SHong Zhang 
2969a9e8502SHong Zhang #undef __FUNCT__
2979a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
2989a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
2999a9e8502SHong Zhang {
3009a9e8502SHong Zhang   PetscErrorCode ierr;
3019a9e8502SHong Zhang   Mat            Ce;
3029a9e8502SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm;
3039a9e8502SHong Zhang 
3049a9e8502SHong Zhang   PetscFunctionBegin;
3059a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3069a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3079a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3089a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3099a9e8502SHong Zhang   *C = Ce;
3109a9e8502SHong Zhang   PetscFunctionReturn(0);
3119a9e8502SHong Zhang }
3129a9e8502SHong Zhang 
3139a9e8502SHong Zhang #undef __FUNCT__
3149a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3159a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3169a9e8502SHong Zhang {
3179a9e8502SHong Zhang   PetscErrorCode ierr;
3189a9e8502SHong Zhang 
3199a9e8502SHong Zhang   PetscFunctionBegin;
3209a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3219a9e8502SHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3229a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3239a9e8502SHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3249a9e8502SHong Zhang   }
3259a9e8502SHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
3269a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
3279a9e8502SHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
328c1d1b975SXuan Zhou   PetscFunctionReturn(0);
329c1d1b975SXuan Zhou }
330c1d1b975SXuan Zhou 
331c1d1b975SXuan Zhou #undef __FUNCT__
332df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
333df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
334df311e6cSXuan Zhou {
335df311e6cSXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
336df311e6cSXuan Zhou   Mat_Elemental      *b = (Mat_Elemental*)B->data;
337df311e6cSXuan Zhou   Mat_Elemental      *c = (Mat_Elemental*)C->data;
338e6dea9dbSXuan Zhou   PetscElemScalar    one = 1,zero = 0;
339df311e6cSXuan Zhou 
340df311e6cSXuan Zhou   PetscFunctionBegin;
341df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
342df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
343df311e6cSXuan Zhou   }
344df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
345df311e6cSXuan Zhou   PetscFunctionReturn(0);
346df311e6cSXuan Zhou }
347df311e6cSXuan Zhou 
348df311e6cSXuan Zhou #undef __FUNCT__
349df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
350df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
351df311e6cSXuan Zhou {
352df311e6cSXuan Zhou   PetscErrorCode ierr;
353df311e6cSXuan Zhou   Mat            Ce;
354df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
355df311e6cSXuan Zhou 
356df311e6cSXuan Zhou   PetscFunctionBegin;
357df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
358df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
359df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
360df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
361df311e6cSXuan Zhou   *C = Ce;
362df311e6cSXuan Zhou   PetscFunctionReturn(0);
363df311e6cSXuan Zhou }
364df311e6cSXuan Zhou 
365df311e6cSXuan Zhou #undef __FUNCT__
366df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
367df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
368df311e6cSXuan Zhou {
369df311e6cSXuan Zhou   PetscErrorCode ierr;
370df311e6cSXuan Zhou 
371df311e6cSXuan Zhou   PetscFunctionBegin;
372df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
373df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
374df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
375df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
376df311e6cSXuan Zhou   }
377df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
378df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
379df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
380df311e6cSXuan Zhou   PetscFunctionReturn(0);
381df311e6cSXuan Zhou }
382df311e6cSXuan Zhou 
383df311e6cSXuan Zhou #undef __FUNCT__
384*61119200SXuan Zhou #define __FUNCT__ "MatGetDiagonal_Elemental"
385*61119200SXuan Zhou static PetscErrorCode MatGetDiagonal_Elemental(Mat X,Vec D)
386*61119200SXuan Zhou {
387*61119200SXuan Zhou   Mat_Elemental   *x = (Mat_Elemental*)X->data;
388*61119200SXuan Zhou   PetscElemScalar *d;
389*61119200SXuan Zhou   PetscErrorCode  ierr;
390*61119200SXuan Zhou 
391*61119200SXuan Zhou   PetscFunctionBegin;
392*61119200SXuan Zhou   ierr = VecGetArray(D,(PetscScalar **)&d);CHKERRQ(ierr);
393*61119200SXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MD,elem::STAR> de((X->rmap->N > X->cmap->N)?X->cmap->N:X->rmap->N,1,0,d,(X->rmap->N > X->cmap->N)?X->cmap->n:X->rmap->n,*x->grid);
394*61119200SXuan Zhou   x->emat->GetDiagonal(de,0);
395*61119200SXuan Zhou   ierr = VecRestoreArray(D,(PetscScalar **)&d);CHKERRQ(ierr);
396*61119200SXuan Zhou   PetscFunctionReturn(0);
397*61119200SXuan Zhou }
398*61119200SXuan Zhou 
399*61119200SXuan Zhou #undef __FUNCT__
4004ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
401e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
40265b78793SXuan Zhou {
40365b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
40465b78793SXuan Zhou 
40565b78793SXuan Zhou   PetscFunctionBegin;
406e6dea9dbSXuan Zhou   elem::Scal((PetscElemScalar)a,*x->emat);
40765b78793SXuan Zhou   PetscFunctionReturn(0);
40865b78793SXuan Zhou }
40965b78793SXuan Zhou 
41065b78793SXuan Zhou #undef __FUNCT__
4114ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
412e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
413e09a3074SHong Zhang {
414e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
415e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
416e09a3074SHong Zhang 
417e09a3074SHong Zhang   PetscFunctionBegin;
418e6dea9dbSXuan Zhou   elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
419e09a3074SHong Zhang   PetscFunctionReturn(0);
420e09a3074SHong Zhang }
421e09a3074SHong Zhang 
422ae844d54SHong Zhang #undef __FUNCT__
423d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
424d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
425d6223691SXuan Zhou {
426d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
427d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
428d6223691SXuan Zhou 
429d6223691SXuan Zhou   PetscFunctionBegin;
430d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
431d6223691SXuan Zhou   PetscFunctionReturn(0);
432d6223691SXuan Zhou }
433d6223691SXuan Zhou 
434d6223691SXuan Zhou #undef __FUNCT__
435df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
436df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
437df311e6cSXuan Zhou {
438df311e6cSXuan Zhou   Mat            Be;
439df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
440df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
441df311e6cSXuan Zhou   PetscErrorCode ierr;
442df311e6cSXuan Zhou 
443df311e6cSXuan Zhou   PetscFunctionBegin;
444df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
445df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
446df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
447df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
448df311e6cSXuan Zhou   *B = Be;
449df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
450df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
451df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
452df311e6cSXuan Zhou   }
453df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
454df311e6cSXuan Zhou   PetscFunctionReturn(0);
455df311e6cSXuan Zhou }
456df311e6cSXuan Zhou 
457df311e6cSXuan Zhou #undef __FUNCT__
458d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
459d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
460d6223691SXuan Zhou {
4613512f328SXuan Zhou   /* Only out-of-place supported */
4625262d616SXuan Zhou   Mat            Be;
4635262d616SXuan Zhou   PetscErrorCode ierr;
4645262d616SXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
4654fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
466d6223691SXuan Zhou 
467d6223691SXuan Zhou   PetscFunctionBegin;
4685262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
4695262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
4705262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
4715262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
4725262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
4735262d616SXuan Zhou     *B = Be;
4745262d616SXuan Zhou   }
4754fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
4765262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
4775262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
478d6223691SXuan Zhou   PetscFunctionReturn(0);
479d6223691SXuan Zhou }
480d6223691SXuan Zhou 
481d6223691SXuan Zhou #undef __FUNCT__
482dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental"
483dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A)
484dfcb0403SXuan Zhou {
485dfcb0403SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
486dfcb0403SXuan Zhou 
487dfcb0403SXuan Zhou   PetscFunctionBegin;
488dfcb0403SXuan Zhou   elem::Conjugate(*a->emat);
489dfcb0403SXuan Zhou   PetscFunctionReturn(0);
490dfcb0403SXuan Zhou }
491dfcb0403SXuan Zhou 
492dfcb0403SXuan Zhou #undef __FUNCT__
4934a29722dSXuan Zhou #define __FUNCT__ "MatHermitianTranspose_Elemental"
4944a29722dSXuan Zhou static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
4954a29722dSXuan Zhou {
4964a29722dSXuan Zhou   /* Only out-of-place supported */
4974a29722dSXuan Zhou   Mat            Be;
4984a29722dSXuan Zhou   PetscErrorCode ierr;
4994a29722dSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
5004a29722dSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
5014a29722dSXuan Zhou 
5024a29722dSXuan Zhou   PetscFunctionBegin;
5034a29722dSXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
5044a29722dSXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
5054a29722dSXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
5064a29722dSXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
5074a29722dSXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
5084a29722dSXuan Zhou     *B = Be;
5094a29722dSXuan Zhou   }
5104a29722dSXuan Zhou   b = (Mat_Elemental*)Be->data;
5114a29722dSXuan Zhou   elem::Adjoint(*a->emat,*b->emat);
5124a29722dSXuan Zhou   Be->assembled = PETSC_TRUE;
5134a29722dSXuan Zhou   PetscFunctionReturn(0);
5144a29722dSXuan Zhou }
5154a29722dSXuan Zhou 
5164a29722dSXuan Zhou #undef __FUNCT__
5171f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
5181f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
5191f881ff8SXuan Zhou {
5201f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
5211f881ff8SXuan Zhou   PetscErrorCode    ierr;
522df311e6cSXuan Zhou   PetscElemScalar   *x;
5231f881ff8SXuan Zhou 
5241f881ff8SXuan Zhou   PetscFunctionBegin;
52545cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
526e6dea9dbSXuan Zhou   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
527df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
528df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
529fc54b460SXuan Zhou   switch (A->factortype) {
530fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5311f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5324b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
53345cf121fSXuan Zhou       elem::Copy(xer,xe);
534fc54b460SXuan Zhou     } else {
5354b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
53645cf121fSXuan Zhou       elem::Copy(xer,xe);
5371f881ff8SXuan Zhou     }
538fc54b460SXuan Zhou     break;
539fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
540fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
541fc54b460SXuan Zhou     elem::Copy(xer,xe);
542fc54b460SXuan Zhou     break;
543fc54b460SXuan Zhou   default:
5444fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
545fc54b460SXuan Zhou     break;
5461f881ff8SXuan Zhou   }
547e6dea9dbSXuan Zhou   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
5481f881ff8SXuan Zhou   PetscFunctionReturn(0);
5491f881ff8SXuan Zhou }
5501f881ff8SXuan Zhou 
5511f881ff8SXuan Zhou #undef __FUNCT__
552df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
553df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
554df311e6cSXuan Zhou {
555df311e6cSXuan Zhou   PetscErrorCode    ierr;
556df311e6cSXuan Zhou 
557df311e6cSXuan Zhou   PetscFunctionBegin;
558df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5593d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
560df311e6cSXuan Zhou   PetscFunctionReturn(0);
561df311e6cSXuan Zhou }
562df311e6cSXuan Zhou 
563df311e6cSXuan Zhou #undef __FUNCT__
564ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
565ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
566ae844d54SHong Zhang {
5671f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
568d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
5691f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
5701f0e42cfSHong Zhang 
571ae844d54SHong Zhang   PetscFunctionBegin;
572d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
573fc54b460SXuan Zhou   switch (A->factortype) {
574fc54b460SXuan Zhou   case MAT_FACTOR_LU:
575d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5764b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
577fc54b460SXuan Zhou     } else {
5784b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
579d6223691SXuan Zhou     }
580fc54b460SXuan Zhou     break;
581fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
582fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
583fc54b460SXuan Zhou     break;
584fc54b460SXuan Zhou   default:
5854fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
586fc54b460SXuan Zhou     break;
587fc54b460SXuan Zhou   }
588ae844d54SHong Zhang   PetscFunctionReturn(0);
589ae844d54SHong Zhang }
590ae844d54SHong Zhang 
591ae844d54SHong Zhang #undef __FUNCT__
592ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
593ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
594ae844d54SHong Zhang {
5957c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
5967c920d81SXuan Zhou 
597ae844d54SHong Zhang   PetscFunctionBegin;
598d6223691SXuan Zhou   if (info->dtcol){
5997c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
6001293973dSHong Zhang   } else {
601d6223691SXuan Zhou     elem::LU(*a->emat);
602d6223691SXuan Zhou   }
6031293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
604834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
605ae844d54SHong Zhang   PetscFunctionReturn(0);
606ae844d54SHong Zhang }
607ae844d54SHong Zhang 
608d7c3f9d8SHong Zhang #undef __FUNCT__
609d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
610d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
611d7c3f9d8SHong Zhang {
612d7c3f9d8SHong Zhang   PetscErrorCode ierr;
613d7c3f9d8SHong Zhang 
614d7c3f9d8SHong Zhang   PetscFunctionBegin;
615d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
616d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
617d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
618d7c3f9d8SHong Zhang }
619d7c3f9d8SHong Zhang 
620d7c3f9d8SHong Zhang #undef __FUNCT__
621d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
622d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
623d7c3f9d8SHong Zhang {
624d7c3f9d8SHong Zhang   PetscFunctionBegin;
625d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
626d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
627d7c3f9d8SHong Zhang }
628d7c3f9d8SHong Zhang 
62945cf121fSXuan Zhou #undef __FUNCT__
63045cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
63145cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
63245cf121fSXuan Zhou {
63345cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
634df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
63545cf121fSXuan Zhou 
63645cf121fSXuan Zhou   PetscFunctionBegin;
637c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
638fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
639834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
64045cf121fSXuan Zhou   PetscFunctionReturn(0);
64145cf121fSXuan Zhou }
64245cf121fSXuan Zhou 
64379673f7bSHong Zhang #undef __FUNCT__
64479673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
64579673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
64679673f7bSHong Zhang {
647cb76c1d8SXuan Zhou   PetscErrorCode ierr;
648cb76c1d8SXuan Zhou 
649cb76c1d8SXuan Zhou   PetscFunctionBegin;
650cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
651cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
652cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
65379673f7bSHong Zhang }
654cb76c1d8SXuan Zhou 
65579673f7bSHong Zhang #undef __FUNCT__
65679673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
65779673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
65879673f7bSHong Zhang {
65979673f7bSHong Zhang   PetscFunctionBegin;
66079673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
66179673f7bSHong Zhang   PetscFunctionReturn(0);
66279673f7bSHong Zhang }
66379673f7bSHong Zhang 
66415767789SHong Zhang EXTERN_C_BEGIN
6651293973dSHong Zhang #undef __FUNCT__
66615767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
66715767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
66815767789SHong Zhang {
66915767789SHong Zhang   PetscFunctionBegin;
67015767789SHong Zhang   *type = MATSOLVERELEMENTAL;
67115767789SHong Zhang   PetscFunctionReturn(0);
67215767789SHong Zhang }
67315767789SHong Zhang EXTERN_C_END
67415767789SHong Zhang 
67515767789SHong Zhang EXTERN_C_BEGIN
67615767789SHong Zhang #undef __FUNCT__
67715767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
67815767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
6791293973dSHong Zhang {
6801293973dSHong Zhang   Mat            B;
6811293973dSHong Zhang   PetscErrorCode ierr;
6821293973dSHong Zhang 
6831293973dSHong Zhang   PetscFunctionBegin;
6841293973dSHong Zhang   /* Create the factorization matrix */
6851293973dSHong Zhang   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
6861293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
6871293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
6881293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
6891293973dSHong Zhang   B->factortype = ftype;
69015767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
6911293973dSHong Zhang   *F            = B;
6921293973dSHong Zhang   PetscFunctionReturn(0);
6931293973dSHong Zhang }
69415767789SHong Zhang EXTERN_C_END
6951293973dSHong Zhang 
6961f881ff8SXuan Zhou #undef __FUNCT__
6971f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
6981f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
6991f881ff8SXuan Zhou {
7001f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7011f881ff8SXuan Zhou 
7021f881ff8SXuan Zhou   PetscFunctionBegin;
7031f881ff8SXuan Zhou   switch (type){
7041f881ff8SXuan Zhou   case NORM_1:
7051f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
7061f881ff8SXuan Zhou     break;
7071f881ff8SXuan Zhou   case NORM_FROBENIUS:
7081f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
7091f881ff8SXuan Zhou     break;
7101f881ff8SXuan Zhou   case NORM_INFINITY:
7111f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
7121f881ff8SXuan Zhou     break;
7131f881ff8SXuan Zhou   default:
7141f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
7151f881ff8SXuan Zhou   }
7161f881ff8SXuan Zhou   PetscFunctionReturn(0);
7171f881ff8SXuan Zhou }
7181f881ff8SXuan Zhou 
7195262d616SXuan Zhou #undef __FUNCT__
7205262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
7215262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
7225262d616SXuan Zhou {
7235262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7245262d616SXuan Zhou 
7255262d616SXuan Zhou   PetscFunctionBegin;
7265262d616SXuan Zhou   elem::Zero(*a->emat);
7275262d616SXuan Zhou   PetscFunctionReturn(0);
7285262d616SXuan Zhou }
7295262d616SXuan Zhou 
7301293973dSHong Zhang EXTERN_C_BEGIN
731e09a3074SHong Zhang #undef __FUNCT__
732db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
733db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
734db31f6deSJed Brown {
735db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
736db31f6deSJed Brown   PetscErrorCode ierr;
737db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
738db31f6deSJed Brown 
739db31f6deSJed Brown   PetscFunctionBegin;
740db31f6deSJed Brown   if (rows) {
741db31f6deSJed Brown     m = a->emat->LocalHeight();
742db31f6deSJed Brown     shift = a->emat->ColShift();
743db31f6deSJed Brown     stride = a->emat->ColStride();
744db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
745db31f6deSJed Brown     for (i=0; i<m; i++) {
746db31f6deSJed Brown       PetscInt rank,offset;
747db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
748db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
749db31f6deSJed Brown     }
750db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
751db31f6deSJed Brown   }
752db31f6deSJed Brown   if (cols) {
753db31f6deSJed Brown     m = a->emat->LocalWidth();
754db31f6deSJed Brown     shift = a->emat->RowShift();
755db31f6deSJed Brown     stride = a->emat->RowStride();
756db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
757db31f6deSJed Brown     for (i=0; i<m; i++) {
758db31f6deSJed Brown       PetscInt rank,offset;
759db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
760db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
761db31f6deSJed Brown     }
762db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
763db31f6deSJed Brown   }
764db31f6deSJed Brown   PetscFunctionReturn(0);
765db31f6deSJed Brown }
7661293973dSHong Zhang EXTERN_C_END
767db31f6deSJed Brown 
768db31f6deSJed Brown #undef __FUNCT__
7692ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
7702ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B)
771af295397SXuan Zhou {
7722ef0cf24SXuan Zhou   Mat                Bmpi;
773af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
774af295397SXuan Zhou   MPI_Comm           comm=((PetscObject)A)->comm;
7752ef0cf24SXuan Zhou   PetscErrorCode     ierr;
7762ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
777df311e6cSXuan Zhou   PetscElemScalar    v;
778af295397SXuan Zhou 
779af295397SXuan Zhou   PetscFunctionBegin;
780c4ad791aSXuan Zhou   if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) {
781c4ad791aSXuan Zhou     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
782c4ad791aSXuan Zhou   }
783af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
784af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7852ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
786af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
7872ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
7882ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
7892ef0cf24SXuan Zhou     PetscInt erow,ecol;
7902ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
7912ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
7922ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
7932ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
7942ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
7952ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
7962ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
7972ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
798e6dea9dbSXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
7992ef0cf24SXuan Zhou     }
8002ef0cf24SXuan Zhou   }
801af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
802af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
803c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
804c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
805c4ad791aSXuan Zhou   } else {
806c4ad791aSXuan Zhou     *B = Bmpi;
807c4ad791aSXuan Zhou   }
808af295397SXuan Zhou   PetscFunctionReturn(0);
809af295397SXuan Zhou }
810af295397SXuan Zhou 
811af295397SXuan Zhou #undef __FUNCT__
812db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
813db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
814db31f6deSJed Brown {
815db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
816db31f6deSJed Brown   PetscErrorCode     ierr;
8175e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
8185e9f5b67SHong Zhang   PetscBool          flg;
8195e9f5b67SHong Zhang   MPI_Comm           icomm;
820db31f6deSJed Brown 
821db31f6deSJed Brown   PetscFunctionBegin;
822c1ee1e62SHong Zhang   a->interface->Detach();
823aae2c449SHong Zhang   delete a->interface;
824aae2c449SHong Zhang   delete a->esubmat;
825db31f6deSJed Brown   delete a->emat;
8265e9f5b67SHong Zhang 
827180a43e4SHong Zhang   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
8285e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
8295e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8305e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8315e9f5b67SHong Zhang     delete commgrid->grid;
8325e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8335e9f5b67SHong Zhang   }
8345e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
835db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr);
8361293973dSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr);
83715767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr);
838db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
839db31f6deSJed Brown   PetscFunctionReturn(0);
840db31f6deSJed Brown }
841db31f6deSJed Brown 
842db31f6deSJed Brown #undef __FUNCT__
843db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
844db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
845db31f6deSJed Brown {
846db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
847db31f6deSJed Brown   PetscErrorCode ierr;
848db31f6deSJed Brown   PetscMPIInt    rsize,csize;
849db31f6deSJed Brown 
850db31f6deSJed Brown   PetscFunctionBegin;
851db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
852db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
853db31f6deSJed Brown 
854db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
855db31f6deSJed Brown   elem::Zero(*a->emat);
856db31f6deSJed Brown 
857db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
858db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
859db31f6deSJed Brown   if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
860db31f6deSJed Brown   a->commsize = rsize;
861db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
862db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
863db31f6deSJed Brown   a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize);
864db31f6deSJed Brown   a->m[1] = A->cmap->N / csize + (a->mr[1] != csize);
865db31f6deSJed Brown   PetscFunctionReturn(0);
866db31f6deSJed Brown }
867db31f6deSJed Brown 
868aae2c449SHong Zhang #undef __FUNCT__
869aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
870aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
871aae2c449SHong Zhang {
872aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
873aae2c449SHong Zhang 
874aae2c449SHong Zhang   PetscFunctionBegin;
875aae2c449SHong Zhang   a->interface->Detach();
876aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
877aae2c449SHong Zhang   PetscFunctionReturn(0);
878aae2c449SHong Zhang }
879aae2c449SHong Zhang 
880aae2c449SHong Zhang #undef __FUNCT__
881aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
882aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
883aae2c449SHong Zhang {
884aae2c449SHong Zhang   PetscFunctionBegin;
885aae2c449SHong Zhang   /* Currently does nothing */
886aae2c449SHong Zhang   PetscFunctionReturn(0);
887aae2c449SHong Zhang }
888aae2c449SHong Zhang 
88940d92e34SHong Zhang /* -------------------------------------------------------------------*/
89040d92e34SHong Zhang static struct _MatOps MatOps_Values = {
89140d92e34SHong Zhang        MatSetValues_Elemental,
89240d92e34SHong Zhang        0,
89340d92e34SHong Zhang        0,
89440d92e34SHong Zhang        MatMult_Elemental,
89540d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
8969426833fSXuan Zhou        MatMultTranspose_Elemental,
897e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
89840d92e34SHong Zhang        MatSolve_Elemental,
899df311e6cSXuan Zhou        MatSolveAdd_Elemental,
90040d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
90140d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
90240d92e34SHong Zhang        MatLUFactor_Elemental,
90340d92e34SHong Zhang        MatCholeskyFactor_Elemental,
90440d92e34SHong Zhang        0,
90540d92e34SHong Zhang        MatTranspose_Elemental,
90640d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
90740d92e34SHong Zhang        0,
908*61119200SXuan Zhou        MatGetDiagonal_Elemental,
9092adf0be3SHong Zhang        0, //MatDiagonalScale_Elemental,?
91040d92e34SHong Zhang        MatNorm_Elemental,
91140d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
91240d92e34SHong Zhang        MatAssemblyEnd_Elemental,
91340d92e34SHong Zhang        0, //MatSetOption_Elemental,
91440d92e34SHong Zhang        MatZeroEntries_Elemental,
91540d92e34SHong Zhang /*24*/ 0,
91640d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
91740d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
91840d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
91940d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
92040d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
92140d92e34SHong Zhang        0,
92240d92e34SHong Zhang        0,
92340d92e34SHong Zhang        0,
92440d92e34SHong Zhang        0,
925df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
92640d92e34SHong Zhang        0,
92740d92e34SHong Zhang        0,
92840d92e34SHong Zhang        0,
92940d92e34SHong Zhang        0,
93040d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
93140d92e34SHong Zhang        0,
93240d92e34SHong Zhang        0,
93340d92e34SHong Zhang        0,
93440d92e34SHong Zhang        MatCopy_Elemental,
93540d92e34SHong Zhang /*44*/ 0,
93640d92e34SHong Zhang        MatScale_Elemental,
93740d92e34SHong Zhang        0,
93840d92e34SHong Zhang        0,
93940d92e34SHong Zhang        0,
94040d92e34SHong Zhang /*49*/ 0,
94140d92e34SHong Zhang        0,
94240d92e34SHong Zhang        0,
94340d92e34SHong Zhang        0,
94440d92e34SHong Zhang        0,
94540d92e34SHong Zhang /*54*/ 0,
94640d92e34SHong Zhang        0,
94740d92e34SHong Zhang        0,
94840d92e34SHong Zhang        0,
94940d92e34SHong Zhang        0,
95040d92e34SHong Zhang /*59*/ 0,
95140d92e34SHong Zhang        MatDestroy_Elemental,
95240d92e34SHong Zhang        MatView_Elemental,
95340d92e34SHong Zhang        0,
95440d92e34SHong Zhang        0,
95540d92e34SHong Zhang /*64*/ 0,
95640d92e34SHong Zhang        0,
95740d92e34SHong Zhang        0,
95840d92e34SHong Zhang        0,
95940d92e34SHong Zhang        0,
96040d92e34SHong Zhang /*69*/ 0,
96140d92e34SHong Zhang        0,
9622ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
96340d92e34SHong Zhang        0,
96440d92e34SHong Zhang        0,
96540d92e34SHong Zhang /*74*/ 0,
96640d92e34SHong Zhang        0,
96740d92e34SHong Zhang        0,
96840d92e34SHong Zhang        0,
96940d92e34SHong Zhang        0,
97040d92e34SHong Zhang /*79*/ 0,
97140d92e34SHong Zhang        0,
97240d92e34SHong Zhang        0,
97340d92e34SHong Zhang        0,
97440d92e34SHong Zhang        0,
97540d92e34SHong Zhang /*84*/ 0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang        0,
97840d92e34SHong Zhang        0,
97940d92e34SHong Zhang        0,
98040d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
98140d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
98240d92e34SHong Zhang        MatMatMultNumeric_Elemental,
98340d92e34SHong Zhang        0,
98440d92e34SHong Zhang        0,
98540d92e34SHong Zhang /*94*/ 0,
986df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
987df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
988df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
98940d92e34SHong Zhang        0,
99040d92e34SHong Zhang /*99*/ 0,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang        0,
993dfcb0403SXuan Zhou        MatConjugate_Elemental,
99440d92e34SHong Zhang        0,
99540d92e34SHong Zhang /*104*/0,
99640d92e34SHong Zhang        0,
99740d92e34SHong Zhang        0,
99840d92e34SHong Zhang        0,
99940d92e34SHong Zhang        0,
100040d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang        0,
100340d92e34SHong Zhang        0,
100440d92e34SHong Zhang        0,
100540d92e34SHong Zhang /*114*/0,
100640d92e34SHong Zhang        0,
100740d92e34SHong Zhang        0,
100840d92e34SHong Zhang        0,
100940d92e34SHong Zhang        0,
101040d92e34SHong Zhang /*119*/0,
10114a29722dSXuan Zhou        MatHermitianTranspose_Elemental,
101240d92e34SHong Zhang        0,
101340d92e34SHong Zhang        0,
101440d92e34SHong Zhang        0,
101540d92e34SHong Zhang /*124*/0,
101640d92e34SHong Zhang        0,
101740d92e34SHong Zhang        0,
101840d92e34SHong Zhang        0,
101940d92e34SHong Zhang        0,
102040d92e34SHong Zhang /*129*/0,
102140d92e34SHong Zhang        0,
102240d92e34SHong Zhang        0,
102340d92e34SHong Zhang        0,
102440d92e34SHong Zhang        0,
102540d92e34SHong Zhang /*134*/0,
102640d92e34SHong Zhang        0,
102740d92e34SHong Zhang        0,
102840d92e34SHong Zhang        0,
102940d92e34SHong Zhang        0
103040d92e34SHong Zhang };
103140d92e34SHong Zhang 
1032ed36708cSHong Zhang /*MC
1033ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1034ed36708cSHong Zhang 
1035ed36708cSHong Zhang    Options Database Keys:
1036ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
1037ed36708cSHong Zhang 
1038ed36708cSHong Zhang   Level: beginner
1039ed36708cSHong Zhang 
1040ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental()
1041ed36708cSHong Zhang M*/
10424a29722dSXuan Zhou 
1043db31f6deSJed Brown #undef __FUNCT__
1044db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1045db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A)
1046db31f6deSJed Brown {
1047db31f6deSJed Brown   Mat_Elemental      *a;
1048db31f6deSJed Brown   PetscErrorCode     ierr;
1049ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10505e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10515e9f5b67SHong Zhang   MPI_Comm           icomm;
1052ed667823SXuan Zhou   PetscInt           optv1,optv2;
1053db31f6deSJed Brown 
1054db31f6deSJed Brown   PetscFunctionBegin;
1055db31f6deSJed Brown   ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr);
105640d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
105740d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1058db31f6deSJed Brown 
1059db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1060db31f6deSJed Brown   A->data = (void*)a;
1061db31f6deSJed Brown 
1062db31f6deSJed Brown   /* Set up the elemental matrix */
1063db31f6deSJed Brown   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
1064ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
10655e9f5b67SHong Zhang 
10665e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
10675e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1068180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
10695e9f5b67SHong Zhang   }
10705e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
10715e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
10725e9f5b67SHong Zhang   if (!flg) {
10735e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
10742ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
10752ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1076ed667823SXuan Zhou     if (flg1 || flg2) {
1077ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
10782ef0cf24SXuan Zhou         SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1079ed667823SXuan Zhou       }
10802adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */
10812ef0cf24SXuan Zhou     } else {
10822adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */
1083ed667823SXuan Zhou     }
10845e9f5b67SHong Zhang     commgrid->grid_refct = 1;
10855e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
10865e9f5b67SHong Zhang   } else {
10875e9f5b67SHong Zhang     commgrid->grid_refct++;
10885e9f5b67SHong Zhang   }
10895e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
10905e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1091df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1092df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1093df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
10947c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1095db31f6deSJed Brown 
1096db31f6deSJed Brown   /* build cache for off array entries formed */
1097aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1098bafd5131SHong Zhang 
1099db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
110015767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1101db31f6deSJed Brown 
1102db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1103ed667823SXuan Zhou   PetscOptionsEnd();
1104db31f6deSJed Brown   PetscFunctionReturn(0);
1105db31f6deSJed Brown }
11064a29722dSXuan Zhou 
1107