11673f470SJose E. Roman #include <petsc/private/petscelemental.h> 2db31f6deSJed Brown 327e75052SPierre Jolivet const char ElementalCitation[] = "@Article{Elemental2012,\n" 427e75052SPierre Jolivet " author = {Jack Poulson and Bryan Marker and Jeff R. Hammond and Nichols A. Romero and Robert {v}an~{d}e~{G}eijn},\n" 527e75052SPierre Jolivet " title = {Elemental: A New Framework for Distributed Memory Dense Matrix Computations},\n" 627e75052SPierre Jolivet " journal = {{ACM} Transactions on Mathematical Software},\n" 727e75052SPierre Jolivet " volume = {39},\n" 827e75052SPierre Jolivet " number = {2},\n" 927e75052SPierre Jolivet " year = {2013}\n" 1027e75052SPierre Jolivet "}\n"; 1127e75052SPierre Jolivet static PetscBool ElementalCite = PETSC_FALSE; 1227e75052SPierre Jolivet 135e9f5b67SHong Zhang /* 145e9f5b67SHong Zhang The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 155e9f5b67SHong Zhang is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 165e9f5b67SHong Zhang */ 175e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 185e9f5b67SHong Zhang 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_Elemental(Mat A, PetscViewer viewer) 20d71ae5a4SJacob Faibussowitsch { 21db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 22db31f6deSJed Brown PetscBool iascii; 23db31f6deSJed Brown 24db31f6deSJed Brown PetscFunctionBegin; 259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 26db31f6deSJed Brown if (iascii) { 27db31f6deSJed Brown PetscViewerFormat format; 289566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 29db31f6deSJed Brown if (format == PETSC_VIEWER_ASCII_INFO) { 3079673f7bSHong Zhang /* call elemental viewing function */ 319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Elemental run parameters:\n")); 3263a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " allocated entries=%zu\n", (*a->emat).AllocatedMemory())); 339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " grid height=%d, grid width=%d\n", (*a->emat).Grid().Height(), (*a->emat).Grid().Width())); 344fe7bbcaSHong Zhang if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 3579673f7bSHong Zhang /* call elemental viewing function */ 369566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)viewer), "test matview_elemental 2\n")); 374fe7bbcaSHong Zhang } 3879673f7bSHong Zhang 39db31f6deSJed Brown } else if (format == PETSC_VIEWER_DEFAULT) { 409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 41e8146892SSatish Balay El::Print(*a->emat, "Elemental matrix (cyclic ordering)"); 429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 43834d3fecSHong Zhang if (A->factortype == MAT_FACTOR_NONE) { 4461119200SXuan Zhou Mat Adense; 459566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATDENSE, MAT_INITIAL_MATRIX, &Adense)); 469566063dSJacob Faibussowitsch PetscCall(MatView(Adense, viewer)); 479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 48834d3fecSHong Zhang } 49ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Format"); 50d2daa67eSHong Zhang } else { 515cb544a0SHong Zhang /* convert to dense format and call MatView() */ 5261119200SXuan Zhou Mat Adense; 539566063dSJacob Faibussowitsch PetscCall(MatConvert(A, MATDENSE, MAT_INITIAL_MATRIX, &Adense)); 549566063dSJacob Faibussowitsch PetscCall(MatView(Adense, viewer)); 559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 56d2daa67eSHong Zhang } 573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58db31f6deSJed Brown } 59db31f6deSJed Brown 60d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetInfo_Elemental(Mat A, MatInfoType flag, MatInfo *info) 61d71ae5a4SJacob Faibussowitsch { 6215767789SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 6315767789SHong Zhang 64180a43e4SHong Zhang PetscFunctionBegin; 655cb544a0SHong Zhang info->block_size = 1.0; 6615767789SHong Zhang 6715767789SHong Zhang if (flag == MAT_LOCAL) { 683966268fSBarry Smith info->nz_allocated = (*a->emat).AllocatedMemory(); /* locally allocated */ 6915767789SHong Zhang info->nz_used = info->nz_allocated; 7015767789SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 71462c564dSBarry Smith //PetscCallMPI(MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin))); 7215767789SHong Zhang /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 7315767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 7415767789SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7515767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 763966268fSBarry Smith info->nz_allocated = (*a->emat).AllocatedMemory(); /* locally allocated */ 7715767789SHong Zhang info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 78462c564dSBarry Smith //PetscCallMPI(MPIU_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 7915767789SHong Zhang //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 8015767789SHong Zhang } 8115767789SHong Zhang 8215767789SHong Zhang info->nz_unneeded = 0.0; 833966268fSBarry Smith info->assemblies = A->num_ass; 8415767789SHong Zhang info->mallocs = 0; 854dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 8615767789SHong Zhang info->fill_ratio_given = 0; /* determined by Elemental */ 8715767789SHong Zhang info->fill_ratio_needed = 0; 8815767789SHong Zhang info->factor_mallocs = 0; 893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90180a43e4SHong Zhang } 91180a43e4SHong Zhang 9266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_Elemental(Mat A, MatOption op, PetscBool flg) 93d71ae5a4SJacob Faibussowitsch { 9432d7a744SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 9532d7a744SHong Zhang 9632d7a744SHong Zhang PetscFunctionBegin; 9732d7a744SHong Zhang switch (op) { 98d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 99d71ae5a4SJacob Faibussowitsch a->roworiented = flg; 100d71ae5a4SJacob Faibussowitsch break; 101d71ae5a4SJacob Faibussowitsch default: 102888c827cSStefano Zampini break; 10332d7a744SHong Zhang } 1043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10532d7a744SHong Zhang } 10632d7a744SHong Zhang 107d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_Elemental(Mat A, PetscInt nr, const PetscInt *rows, PetscInt nc, const PetscInt *cols, const PetscScalar *vals, InsertMode imode) 108d71ae5a4SJacob Faibussowitsch { 109db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 110fbbcb730SJack Poulson PetscInt i, j, rrank, ridx, crank, cidx, erow, ecol, numQueues = 0; 111db31f6deSJed Brown 112db31f6deSJed Brown PetscFunctionBegin; 113fbbcb730SJack Poulson // TODO: Initialize matrix to all zeros? 114fbbcb730SJack Poulson 115fbbcb730SJack Poulson // Count the number of queues from this process 11632d7a744SHong Zhang if (a->roworiented) { 117db31f6deSJed Brown for (i = 0; i < nr; i++) { 118db31f6deSJed Brown if (rows[i] < 0) continue; 119db31f6deSJed Brown P2RO(A, 0, rows[i], &rrank, &ridx); 120db31f6deSJed Brown RO2E(A, 0, rrank, ridx, &erow); 121aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect row translation"); 122db31f6deSJed Brown for (j = 0; j < nc; j++) { 123db31f6deSJed Brown if (cols[j] < 0) continue; 124db31f6deSJed Brown P2RO(A, 1, cols[j], &crank, &cidx); 125db31f6deSJed Brown RO2E(A, 1, crank, cidx, &ecol); 126aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect col translation"); 127fbbcb730SJack Poulson if (!a->emat->IsLocal(erow, ecol)) { /* off-proc entry */ 128fbbcb730SJack Poulson /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */ 12908401ef6SPierre Jolivet PetscCheck(imode == ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only ADD_VALUES to off-processor entry is supported"); 130fbbcb730SJack Poulson ++numQueues; 131aae2c449SHong Zhang continue; 132ed36708cSHong Zhang } 133fbbcb730SJack Poulson /* printf("Locally updating (%d,%d)\n",erow,ecol); */ 134db31f6deSJed Brown switch (imode) { 135d71ae5a4SJacob Faibussowitsch case INSERT_VALUES: 136d71ae5a4SJacob Faibussowitsch a->emat->Set(erow, ecol, (PetscElemScalar)vals[i * nc + j]); 137d71ae5a4SJacob Faibussowitsch break; 138d71ae5a4SJacob Faibussowitsch case ADD_VALUES: 139d71ae5a4SJacob Faibussowitsch a->emat->Update(erow, ecol, (PetscElemScalar)vals[i * nc + j]); 140d71ae5a4SJacob Faibussowitsch break; 141d71ae5a4SJacob Faibussowitsch default: 142d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for InsertMode %d", (int)imode); 143db31f6deSJed Brown } 144db31f6deSJed Brown } 145db31f6deSJed Brown } 146fbbcb730SJack Poulson 147fbbcb730SJack Poulson /* printf("numQueues=%d\n",numQueues); */ 148fbbcb730SJack Poulson a->emat->Reserve(numQueues); 149fbbcb730SJack Poulson for (i = 0; i < nr; i++) { 150fbbcb730SJack Poulson if (rows[i] < 0) continue; 151fbbcb730SJack Poulson P2RO(A, 0, rows[i], &rrank, &ridx); 152fbbcb730SJack Poulson RO2E(A, 0, rrank, ridx, &erow); 153fbbcb730SJack Poulson for (j = 0; j < nc; j++) { 154fbbcb730SJack Poulson if (cols[j] < 0) continue; 155fbbcb730SJack Poulson P2RO(A, 1, cols[j], &crank, &cidx); 156fbbcb730SJack Poulson RO2E(A, 1, crank, cidx, &ecol); 157fbbcb730SJack Poulson if (!a->emat->IsLocal(erow, ecol)) { /*off-proc entry*/ 158fbbcb730SJack Poulson /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */ 159fbbcb730SJack Poulson a->emat->QueueUpdate(erow, ecol, vals[i * nc + j]); 160fbbcb730SJack Poulson } 161fbbcb730SJack Poulson } 162fbbcb730SJack Poulson } 1635e116b59SBarry Smith } else { /* column-oriented */ 16432d7a744SHong Zhang for (j = 0; j < nc; j++) { 16532d7a744SHong Zhang if (cols[j] < 0) continue; 16632d7a744SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 16732d7a744SHong Zhang RO2E(A, 1, crank, cidx, &ecol); 168aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect col translation"); 16932d7a744SHong Zhang for (i = 0; i < nr; i++) { 17032d7a744SHong Zhang if (rows[i] < 0) continue; 17132d7a744SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); 17232d7a744SHong Zhang RO2E(A, 0, rrank, ridx, &erow); 173aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Incorrect row translation"); 17432d7a744SHong Zhang if (!a->emat->IsLocal(erow, ecol)) { /* off-proc entry */ 17532d7a744SHong Zhang /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */ 17608401ef6SPierre Jolivet PetscCheck(imode == ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only ADD_VALUES to off-processor entry is supported"); 17732d7a744SHong Zhang ++numQueues; 17832d7a744SHong Zhang continue; 17932d7a744SHong Zhang } 18032d7a744SHong Zhang /* printf("Locally updating (%d,%d)\n",erow,ecol); */ 18132d7a744SHong Zhang switch (imode) { 182d71ae5a4SJacob Faibussowitsch case INSERT_VALUES: 183d71ae5a4SJacob Faibussowitsch a->emat->Set(erow, ecol, (PetscElemScalar)vals[i + j * nr]); 184d71ae5a4SJacob Faibussowitsch break; 185d71ae5a4SJacob Faibussowitsch case ADD_VALUES: 186d71ae5a4SJacob Faibussowitsch a->emat->Update(erow, ecol, (PetscElemScalar)vals[i + j * nr]); 187d71ae5a4SJacob Faibussowitsch break; 188d71ae5a4SJacob Faibussowitsch default: 189d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for InsertMode %d", (int)imode); 19032d7a744SHong Zhang } 19132d7a744SHong Zhang } 19232d7a744SHong Zhang } 19332d7a744SHong Zhang 19432d7a744SHong Zhang /* printf("numQueues=%d\n",numQueues); */ 19532d7a744SHong Zhang a->emat->Reserve(numQueues); 19632d7a744SHong Zhang for (j = 0; j < nc; j++) { 19732d7a744SHong Zhang if (cols[j] < 0) continue; 19832d7a744SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 19932d7a744SHong Zhang RO2E(A, 1, crank, cidx, &ecol); 20032d7a744SHong Zhang 20132d7a744SHong Zhang for (i = 0; i < nr; i++) { 20232d7a744SHong Zhang if (rows[i] < 0) continue; 20332d7a744SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); 20432d7a744SHong Zhang RO2E(A, 0, rrank, ridx, &erow); 20532d7a744SHong Zhang if (!a->emat->IsLocal(erow, ecol)) { /*off-proc entry*/ 20632d7a744SHong Zhang /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */ 20732d7a744SHong Zhang a->emat->QueueUpdate(erow, ecol, vals[i + j * nr]); 20832d7a744SHong Zhang } 20932d7a744SHong Zhang } 21032d7a744SHong Zhang } 21132d7a744SHong Zhang } 2123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213db31f6deSJed Brown } 214db31f6deSJed Brown 215d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMult_Elemental(Mat A, Vec X, Vec Y) 216d71ae5a4SJacob Faibussowitsch { 217db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 218e6dea9dbSXuan Zhou const PetscElemScalar *x; 219e6dea9dbSXuan Zhou PetscElemScalar *y; 220df311e6cSXuan Zhou PetscElemScalar one = 1, zero = 0; 221db31f6deSJed Brown 222db31f6deSJed Brown PetscFunctionBegin; 2239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2249566063dSJacob Faibussowitsch PetscCall(VecGetArray(Y, (PetscScalar **)&y)); 225db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 226e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ye; 2270c18141cSBarry Smith xe.LockedAttach(A->cmap->N, 1, *a->grid, 0, 0, x, A->cmap->n); 2280c18141cSBarry Smith ye.Attach(A->rmap->N, 1, *a->grid, 0, 0, y, A->rmap->n); 229e8146892SSatish Balay El::Gemv(El::NORMAL, one, *a->emat, xe, zero, ye); 230db31f6deSJed Brown } 2319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Y, (PetscScalar **)&y)); 2333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 234db31f6deSJed Brown } 235db31f6deSJed Brown 236d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultTranspose_Elemental(Mat A, Vec X, Vec Y) 237d71ae5a4SJacob Faibussowitsch { 2389426833fSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 239df311e6cSXuan Zhou const PetscElemScalar *x; 240df311e6cSXuan Zhou PetscElemScalar *y; 241e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 2429426833fSXuan Zhou 2439426833fSXuan Zhou PetscFunctionBegin; 2449566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2459566063dSJacob Faibussowitsch PetscCall(VecGetArray(Y, (PetscScalar **)&y)); 2469426833fSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 247e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ye; 2480c18141cSBarry Smith xe.LockedAttach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 2490c18141cSBarry Smith ye.Attach(A->cmap->N, 1, *a->grid, 0, 0, y, A->cmap->n); 250e8146892SSatish Balay El::Gemv(El::TRANSPOSE, one, *a->emat, xe, zero, ye); 2519426833fSXuan Zhou } 2529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2539566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Y, (PetscScalar **)&y)); 2543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2559426833fSXuan Zhou } 2569426833fSXuan Zhou 257d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultAdd_Elemental(Mat A, Vec X, Vec Y, Vec Z) 258d71ae5a4SJacob Faibussowitsch { 259db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 260df311e6cSXuan Zhou const PetscElemScalar *x; 261df311e6cSXuan Zhou PetscElemScalar *z; 262e6dea9dbSXuan Zhou PetscElemScalar one = 1; 263db31f6deSJed Brown 264db31f6deSJed Brown PetscFunctionBegin; 2659566063dSJacob Faibussowitsch if (Y != Z) PetscCall(VecCopy(Y, Z)); 2669566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2679566063dSJacob Faibussowitsch PetscCall(VecGetArray(Z, (PetscScalar **)&z)); 268db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 269e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ze; 2700c18141cSBarry Smith xe.LockedAttach(A->cmap->N, 1, *a->grid, 0, 0, x, A->cmap->n); 2710c18141cSBarry Smith ze.Attach(A->rmap->N, 1, *a->grid, 0, 0, z, A->rmap->n); 272e8146892SSatish Balay El::Gemv(El::NORMAL, one, *a->emat, xe, one, ze); 273db31f6deSJed Brown } 2749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Z, (PetscScalar **)&z)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277db31f6deSJed Brown } 278db31f6deSJed Brown 279d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A, Vec X, Vec Y, Vec Z) 280d71ae5a4SJacob Faibussowitsch { 281e883f9d5SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 282df311e6cSXuan Zhou const PetscElemScalar *x; 283df311e6cSXuan Zhou PetscElemScalar *z; 284e6dea9dbSXuan Zhou PetscElemScalar one = 1; 285e883f9d5SXuan Zhou 286e883f9d5SXuan Zhou PetscFunctionBegin; 2879566063dSJacob Faibussowitsch if (Y != Z) PetscCall(VecCopy(Y, Z)); 2889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, (const PetscScalar **)&x)); 2899566063dSJacob Faibussowitsch PetscCall(VecGetArray(Z, (PetscScalar **)&z)); 290e883f9d5SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 291e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe, ze; 2920c18141cSBarry Smith xe.LockedAttach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 2930c18141cSBarry Smith ze.Attach(A->cmap->N, 1, *a->grid, 0, 0, z, A->cmap->n); 294e8146892SSatish Balay El::Gemv(El::TRANSPOSE, one, *a->emat, xe, one, ze); 295e883f9d5SXuan Zhou } 2969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, (const PetscScalar **)&x)); 2979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(Z, (PetscScalar **)&z)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299e883f9d5SXuan Zhou } 300e883f9d5SXuan Zhou 301d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_Elemental(Mat A, Mat B, Mat C) 302d71ae5a4SJacob Faibussowitsch { 303c1d1b975SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 304c1d1b975SXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 3059a9e8502SHong Zhang Mat_Elemental *c = (Mat_Elemental *)C->data; 306e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 307c1d1b975SXuan Zhou 308c1d1b975SXuan Zhou PetscFunctionBegin; 309aae2c449SHong Zhang { /* Scoping so that constructor is called before pointer is returned */ 310e8146892SSatish Balay El::Gemm(El::NORMAL, El::NORMAL, one, *a->emat, *b->emat, zero, *c->emat); 311aae2c449SHong Zhang } 3129a9e8502SHong Zhang C->assembled = PETSC_TRUE; 3133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3149a9e8502SHong Zhang } 3159a9e8502SHong Zhang 316cedd07caSPierre Jolivet PetscErrorCode MatMatMultSymbolic_Elemental(Mat A, Mat B, PetscReal, Mat Ce) 317d71ae5a4SJacob Faibussowitsch { 3189a9e8502SHong Zhang PetscFunctionBegin; 3199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ce, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 3209566063dSJacob Faibussowitsch PetscCall(MatSetType(Ce, MATELEMENTAL)); 3219566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ce)); 3224222ddf1SHong Zhang Ce->ops->matmultnumeric = MatMatMultNumeric_Elemental; 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 324c1d1b975SXuan Zhou } 325c1d1b975SXuan Zhou 326d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A, Mat B, Mat C) 327d71ae5a4SJacob Faibussowitsch { 328df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 329df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 330df311e6cSXuan Zhou Mat_Elemental *c = (Mat_Elemental *)C->data; 331e6dea9dbSXuan Zhou PetscElemScalar one = 1, zero = 0; 332df311e6cSXuan Zhou 333df311e6cSXuan Zhou PetscFunctionBegin; 334df311e6cSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 335e8146892SSatish Balay El::Gemm(El::NORMAL, El::TRANSPOSE, one, *a->emat, *b->emat, zero, *c->emat); 336df311e6cSXuan Zhou } 337df311e6cSXuan Zhou C->assembled = PETSC_TRUE; 3383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 339df311e6cSXuan Zhou } 340df311e6cSXuan Zhou 341cedd07caSPierre Jolivet static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A, Mat B, PetscReal, Mat C) 342d71ae5a4SJacob Faibussowitsch { 343df311e6cSXuan Zhou PetscFunctionBegin; 3449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 3459566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATELEMENTAL)); 3469566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 3473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 348df311e6cSXuan Zhou } 349df311e6cSXuan Zhou 350d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_Elemental_AB(Mat C) 351d71ae5a4SJacob Faibussowitsch { 3524222ddf1SHong Zhang PetscFunctionBegin; 3534222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_Elemental; 3544222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3564222ddf1SHong Zhang } 3574222ddf1SHong Zhang 358d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_Elemental_ABt(Mat C) 359d71ae5a4SJacob Faibussowitsch { 3604222ddf1SHong Zhang PetscFunctionBegin; 3614222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_Elemental; 3624222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 3633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3644222ddf1SHong Zhang } 3654222ddf1SHong Zhang 366d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_Elemental(Mat C) 367d71ae5a4SJacob Faibussowitsch { 3684222ddf1SHong Zhang Mat_Product *product = C->product; 3694222ddf1SHong Zhang 3704222ddf1SHong Zhang PetscFunctionBegin; 3714222ddf1SHong Zhang switch (product->type) { 372d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 373d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_Elemental_AB(C)); 374d71ae5a4SJacob Faibussowitsch break; 375d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 376d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_Elemental_ABt(C)); 377d71ae5a4SJacob Faibussowitsch break; 378d71ae5a4SJacob Faibussowitsch default: 379d71ae5a4SJacob Faibussowitsch break; 3804222ddf1SHong Zhang } 3813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3824222ddf1SHong Zhang } 383f6e5db1bSPierre Jolivet 38466976f2fSJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_Elemental_MPIDense(Mat A, Mat B, Mat C) 385d71ae5a4SJacob Faibussowitsch { 386f6e5db1bSPierre Jolivet Mat Be, Ce; 387f6e5db1bSPierre Jolivet 388f6e5db1bSPierre Jolivet PetscFunctionBegin; 3899566063dSJacob Faibussowitsch PetscCall(MatConvert(B, MATELEMENTAL, MAT_INITIAL_MATRIX, &Be)); 390fb842aefSJose E. Roman PetscCall(MatMatMult(A, Be, MAT_INITIAL_MATRIX, PETSC_DETERMINE, &Ce)); 3919566063dSJacob Faibussowitsch PetscCall(MatConvert(Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 3929566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Be)); 3939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ce)); 3943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 395f6e5db1bSPierre Jolivet } 396f6e5db1bSPierre Jolivet 39766976f2fSJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_Elemental_MPIDense(Mat A, Mat B, PetscReal, Mat C) 398d71ae5a4SJacob Faibussowitsch { 399f6e5db1bSPierre Jolivet PetscFunctionBegin; 4009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 4019566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 4029566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 403f6e5db1bSPierre Jolivet C->ops->matmultnumeric = MatMatMultNumeric_Elemental_MPIDense; 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405f6e5db1bSPierre Jolivet } 406f6e5db1bSPierre Jolivet 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_Elemental_MPIDense_AB(Mat C) 408d71ae5a4SJacob Faibussowitsch { 409f6e5db1bSPierre Jolivet PetscFunctionBegin; 410f6e5db1bSPierre Jolivet C->ops->matmultsymbolic = MatMatMultSymbolic_Elemental_MPIDense; 411f6e5db1bSPierre Jolivet C->ops->productsymbolic = MatProductSymbolic_AB; 4123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 413f6e5db1bSPierre Jolivet } 414f6e5db1bSPierre Jolivet 41566976f2fSJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_Elemental_MPIDense(Mat C) 416d71ae5a4SJacob Faibussowitsch { 417f6e5db1bSPierre Jolivet Mat_Product *product = C->product; 418f6e5db1bSPierre Jolivet 419f6e5db1bSPierre Jolivet PetscFunctionBegin; 42048a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_Elemental_MPIDense_AB(C)); 4213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 422f6e5db1bSPierre Jolivet } 4234222ddf1SHong Zhang 424d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_Elemental(Mat A, Vec D) 425d71ae5a4SJacob Faibussowitsch { 426a9d89745SXuan Zhou PetscInt i, nrows, ncols, nD, rrank, ridx, crank, cidx; 427a9d89745SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 428a9d89745SXuan Zhou PetscElemScalar v; 429ce94432eSBarry Smith MPI_Comm comm; 43061119200SXuan Zhou 43161119200SXuan Zhou PetscFunctionBegin; 4329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4339566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &nrows, &ncols)); 434a9d89745SXuan Zhou nD = nrows > ncols ? ncols : nrows; 435a9d89745SXuan Zhou for (i = 0; i < nD; i++) { 436a9d89745SXuan Zhou PetscInt erow, ecol; 437a9d89745SXuan Zhou P2RO(A, 0, i, &rrank, &ridx); 438a9d89745SXuan Zhou RO2E(A, 0, rrank, ridx, &erow); 439aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 440a9d89745SXuan Zhou P2RO(A, 1, i, &crank, &cidx); 441a9d89745SXuan Zhou RO2E(A, 1, crank, cidx, &ecol); 442aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 443a9d89745SXuan Zhou v = a->emat->Get(erow, ecol); 4449566063dSJacob Faibussowitsch PetscCall(VecSetValues(D, 1, &i, (PetscScalar *)&v, INSERT_VALUES)); 445ade3cc5eSXuan Zhou } 4469566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(D)); 4479566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(D)); 4483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44961119200SXuan Zhou } 45061119200SXuan Zhou 451d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_Elemental(Mat X, Vec L, Vec R) 452d71ae5a4SJacob Faibussowitsch { 453ade3cc5eSXuan Zhou Mat_Elemental *x = (Mat_Elemental *)X->data; 454ade3cc5eSXuan Zhou const PetscElemScalar *d; 455ade3cc5eSXuan Zhou 456ade3cc5eSXuan Zhou PetscFunctionBegin; 4579065cd98SJed Brown if (R) { 4589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(R, (const PetscScalar **)&d)); 459e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> de; 4600c18141cSBarry Smith de.LockedAttach(X->cmap->N, 1, *x->grid, 0, 0, d, X->cmap->n); 461e8146892SSatish Balay El::DiagonalScale(El::RIGHT, El::NORMAL, de, *x->emat); 4629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(R, (const PetscScalar **)&d)); 4639065cd98SJed Brown } 4649065cd98SJed Brown if (L) { 4659566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(L, (const PetscScalar **)&d)); 466e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> de; 4670c18141cSBarry Smith de.LockedAttach(X->rmap->N, 1, *x->grid, 0, 0, d, X->rmap->n); 468e8146892SSatish Balay El::DiagonalScale(El::LEFT, El::NORMAL, de, *x->emat); 4699566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(L, (const PetscScalar **)&d)); 470ade3cc5eSXuan Zhou } 4713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472ade3cc5eSXuan Zhou } 473ade3cc5eSXuan Zhou 474cedd07caSPierre Jolivet static PetscErrorCode MatMissingDiagonal_Elemental(Mat, PetscBool *missing, PetscInt *) 475d71ae5a4SJacob Faibussowitsch { 47634fa46e1SFrancesco Ballarin PetscFunctionBegin; 47734fa46e1SFrancesco Ballarin *missing = PETSC_FALSE; 4783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47934fa46e1SFrancesco Ballarin } 48034fa46e1SFrancesco Ballarin 481d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatScale_Elemental(Mat X, PetscScalar a) 482d71ae5a4SJacob Faibussowitsch { 48365b78793SXuan Zhou Mat_Elemental *x = (Mat_Elemental *)X->data; 48465b78793SXuan Zhou 48565b78793SXuan Zhou PetscFunctionBegin; 486e8146892SSatish Balay El::Scale((PetscElemScalar)a, *x->emat); 4873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48865b78793SXuan Zhou } 48965b78793SXuan Zhou 490f82baa17SHong Zhang /* 491f82baa17SHong Zhang MatAXPY - Computes Y = a*X + Y. 492f82baa17SHong Zhang */ 493cedd07caSPierre Jolivet static PetscErrorCode MatAXPY_Elemental(Mat Y, PetscScalar a, Mat X, MatStructure) 494d71ae5a4SJacob Faibussowitsch { 495e09a3074SHong Zhang Mat_Elemental *x = (Mat_Elemental *)X->data; 496e09a3074SHong Zhang Mat_Elemental *y = (Mat_Elemental *)Y->data; 497e09a3074SHong Zhang 498e09a3074SHong Zhang PetscFunctionBegin; 499e8146892SSatish Balay El::Axpy((PetscElemScalar)a, *x->emat, *y->emat); 5009566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 5013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 502e09a3074SHong Zhang } 503e09a3074SHong Zhang 504cedd07caSPierre Jolivet static PetscErrorCode MatCopy_Elemental(Mat A, Mat B, MatStructure) 505d71ae5a4SJacob Faibussowitsch { 506d6223691SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 507d6223691SXuan Zhou Mat_Elemental *b = (Mat_Elemental *)B->data; 508d6223691SXuan Zhou 509d6223691SXuan Zhou PetscFunctionBegin; 510e8146892SSatish Balay El::Copy(*a->emat, *b->emat); 5119566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 5123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 513d6223691SXuan Zhou } 514d6223691SXuan Zhou 515d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_Elemental(Mat A, MatDuplicateOption op, Mat *B) 516d71ae5a4SJacob Faibussowitsch { 517df311e6cSXuan Zhou Mat Be; 518ce94432eSBarry Smith MPI_Comm comm; 519df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 520df311e6cSXuan Zhou 521df311e6cSXuan Zhou PetscFunctionBegin; 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 5239566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 5249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 5259566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 5269566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 527df311e6cSXuan Zhou *B = Be; 528df311e6cSXuan Zhou if (op == MAT_COPY_VALUES) { 529df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental *)Be->data; 530e8146892SSatish Balay El::Copy(*a->emat, *b->emat); 531df311e6cSXuan Zhou } 532df311e6cSXuan Zhou Be->assembled = PETSC_TRUE; 5333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 534df311e6cSXuan Zhou } 535df311e6cSXuan Zhou 536d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTranspose_Elemental(Mat A, MatReuse reuse, Mat *B) 537d71ae5a4SJacob Faibussowitsch { 538ec8cb81fSBarry Smith Mat Be = *B; 539ce94432eSBarry Smith MPI_Comm comm; 5404fe7bbcaSHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data, *b; 541d6223691SXuan Zhou 542d6223691SXuan Zhou PetscFunctionBegin; 5437fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 5449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 5455cb544a0SHong Zhang /* Only out-of-place supported */ 5465f80ce2aSJacob Faibussowitsch PetscCheck(reuse != MAT_INPLACE_MATRIX, comm, PETSC_ERR_SUP, "Only out-of-place supported"); 5475262d616SXuan Zhou if (reuse == MAT_INITIAL_MATRIX) { 5489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 5499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->cmap->n, A->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 5509566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 5519566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 5525262d616SXuan Zhou *B = Be; 5535262d616SXuan Zhou } 5544fe7bbcaSHong Zhang b = (Mat_Elemental *)Be->data; 555e8146892SSatish Balay El::Transpose(*a->emat, *b->emat); 5565262d616SXuan Zhou Be->assembled = PETSC_TRUE; 5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 558d6223691SXuan Zhou } 559d6223691SXuan Zhou 560d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatConjugate_Elemental(Mat A) 561d71ae5a4SJacob Faibussowitsch { 562dfcb0403SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 563dfcb0403SXuan Zhou 564dfcb0403SXuan Zhou PetscFunctionBegin; 565e8146892SSatish Balay El::Conjugate(*a->emat); 5663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 567dfcb0403SXuan Zhou } 568dfcb0403SXuan Zhou 569d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatHermitianTranspose_Elemental(Mat A, MatReuse reuse, Mat *B) 570d71ae5a4SJacob Faibussowitsch { 571ec8cb81fSBarry Smith Mat Be = *B; 572ce94432eSBarry Smith MPI_Comm comm; 5734a29722dSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data, *b; 5744a29722dSXuan Zhou 5754a29722dSXuan Zhou PetscFunctionBegin; 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 5775cb544a0SHong Zhang /* Only out-of-place supported */ 5784a29722dSXuan Zhou if (reuse == MAT_INITIAL_MATRIX) { 5799566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Be)); 5809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, A->cmap->n, A->rmap->n, PETSC_DECIDE, PETSC_DECIDE)); 5819566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 5829566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 5834a29722dSXuan Zhou *B = Be; 5844a29722dSXuan Zhou } 5854a29722dSXuan Zhou b = (Mat_Elemental *)Be->data; 586e8146892SSatish Balay El::Adjoint(*a->emat, *b->emat); 5874a29722dSXuan Zhou Be->assembled = PETSC_TRUE; 5883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5894a29722dSXuan Zhou } 5904a29722dSXuan Zhou 591d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolve_Elemental(Mat A, Vec B, Vec X) 592d71ae5a4SJacob Faibussowitsch { 5931f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 594df311e6cSXuan Zhou PetscElemScalar *x; 595ea394475SSatish Balay PetscInt pivoting = a->pivoting; 5961f881ff8SXuan Zhou 5971f881ff8SXuan Zhou PetscFunctionBegin; 5989566063dSJacob Faibussowitsch PetscCall(VecCopy(B, X)); 5999566063dSJacob Faibussowitsch PetscCall(VecGetArray(X, (PetscScalar **)&x)); 600ea394475SSatish Balay 601e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::VC, El::STAR> xe; 6020c18141cSBarry Smith xe.Attach(A->rmap->N, 1, *a->grid, 0, 0, x, A->rmap->n); 603e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::MC, El::MR> xer(xe); 604fc54b460SXuan Zhou switch (A->factortype) { 605fc54b460SXuan Zhou case MAT_FACTOR_LU: 606ea394475SSatish Balay if (pivoting == 0) { 607e8146892SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, xer); 608ea394475SSatish Balay } else if (pivoting == 1) { 609ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, xer); 610ea394475SSatish Balay } else { /* pivoting == 2 */ 611ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *a->Q, xer); 6121f881ff8SXuan Zhou } 613fc54b460SXuan Zhou break; 614d71ae5a4SJacob Faibussowitsch case MAT_FACTOR_CHOLESKY: 615d71ae5a4SJacob Faibussowitsch El::cholesky::SolveAfter(El::UPPER, El::NORMAL, *a->emat, xer); 616d71ae5a4SJacob Faibussowitsch break; 617d71ae5a4SJacob Faibussowitsch default: 618d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unfactored Matrix or Unsupported MatFactorType"); 619d71ae5a4SJacob Faibussowitsch break; 6201f881ff8SXuan Zhou } 621ea394475SSatish Balay El::Copy(xer, xe); 622ea394475SSatish Balay 6239566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(X, (PetscScalar **)&x)); 6243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6251f881ff8SXuan Zhou } 6261f881ff8SXuan Zhou 627d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSolveAdd_Elemental(Mat A, Vec B, Vec Y, Vec X) 628d71ae5a4SJacob Faibussowitsch { 629df311e6cSXuan Zhou PetscFunctionBegin; 6309566063dSJacob Faibussowitsch PetscCall(MatSolve_Elemental(A, B, X)); 6319566063dSJacob Faibussowitsch PetscCall(VecAXPY(X, 1, Y)); 6323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 633df311e6cSXuan Zhou } 634df311e6cSXuan Zhou 635d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatSolve_Elemental(Mat A, Mat B, Mat X) 636d71ae5a4SJacob Faibussowitsch { 6371f0e42cfSHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 63842ba530cSPierre Jolivet Mat_Elemental *x; 63942ba530cSPierre Jolivet Mat C; 640ea394475SSatish Balay PetscInt pivoting = a->pivoting; 64142ba530cSPierre Jolivet PetscBool flg; 64242ba530cSPierre Jolivet MatType type; 6431f0e42cfSHong Zhang 644ae844d54SHong Zhang PetscFunctionBegin; 6459566063dSJacob Faibussowitsch PetscCall(MatGetType(X, &type)); 6469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, MATELEMENTAL, &flg)); 64742ba530cSPierre Jolivet if (!flg) { 6489566063dSJacob Faibussowitsch PetscCall(MatConvert(B, MATELEMENTAL, MAT_INITIAL_MATRIX, &C)); 64942ba530cSPierre Jolivet x = (Mat_Elemental *)C->data; 65042ba530cSPierre Jolivet } else { 65142ba530cSPierre Jolivet x = (Mat_Elemental *)X->data; 65242ba530cSPierre Jolivet El::Copy(*((Mat_Elemental *)B->data)->emat, *x->emat); 65342ba530cSPierre Jolivet } 654fc54b460SXuan Zhou switch (A->factortype) { 655fc54b460SXuan Zhou case MAT_FACTOR_LU: 656ea394475SSatish Balay if (pivoting == 0) { 657e8146892SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *x->emat); 658ea394475SSatish Balay } else if (pivoting == 1) { 659ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *x->emat); 660ea394475SSatish Balay } else { 661ea394475SSatish Balay El::lu::SolveAfter(El::NORMAL, *a->emat, *a->P, *a->Q, *x->emat); 662d6223691SXuan Zhou } 663fc54b460SXuan Zhou break; 664d71ae5a4SJacob Faibussowitsch case MAT_FACTOR_CHOLESKY: 665d71ae5a4SJacob Faibussowitsch El::cholesky::SolveAfter(El::UPPER, El::NORMAL, *a->emat, *x->emat); 666d71ae5a4SJacob Faibussowitsch break; 667d71ae5a4SJacob Faibussowitsch default: 668d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unfactored Matrix or Unsupported MatFactorType"); 669d71ae5a4SJacob Faibussowitsch break; 670fc54b460SXuan Zhou } 67142ba530cSPierre Jolivet if (!flg) { 6729566063dSJacob Faibussowitsch PetscCall(MatConvert(C, type, MAT_REUSE_MATRIX, &X)); 6739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 67442ba530cSPierre Jolivet } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676ae844d54SHong Zhang } 677ae844d54SHong Zhang 678cedd07caSPierre Jolivet static PetscErrorCode MatLUFactor_Elemental(Mat A, IS, IS, const MatFactorInfo *) 679d71ae5a4SJacob Faibussowitsch { 6807c920d81SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 681ea394475SSatish Balay PetscInt pivoting = a->pivoting; 6827c920d81SXuan Zhou 683ae844d54SHong Zhang PetscFunctionBegin; 684ea394475SSatish Balay if (pivoting == 0) { 685e8146892SSatish Balay El::LU(*a->emat); 686ea394475SSatish Balay } else if (pivoting == 1) { 687ea394475SSatish Balay El::LU(*a->emat, *a->P); 688ea394475SSatish Balay } else { 689ea394475SSatish Balay El::LU(*a->emat, *a->P, *a->Q); 690d6223691SXuan Zhou } 6911293973dSHong Zhang A->factortype = MAT_FACTOR_LU; 692834d3fecSHong Zhang A->assembled = PETSC_TRUE; 693f6224b95SHong Zhang 6949566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 6959566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &A->solvertype)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697ae844d54SHong Zhang } 698ae844d54SHong Zhang 699d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F, Mat A, const MatFactorInfo *info) 700d71ae5a4SJacob Faibussowitsch { 701d7c3f9d8SHong Zhang PetscFunctionBegin; 7029566063dSJacob Faibussowitsch PetscCall(MatCopy(A, F, SAME_NONZERO_PATTERN)); 703f22e26b7SPierre Jolivet PetscCall(MatLUFactor_Elemental(F, nullptr, nullptr, info)); 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 705d7c3f9d8SHong Zhang } 706d7c3f9d8SHong Zhang 707cedd07caSPierre Jolivet static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat, Mat, IS, IS, const MatFactorInfo *) 708d71ae5a4SJacob Faibussowitsch { 709d7c3f9d8SHong Zhang PetscFunctionBegin; 710d8304050SJose E. Roman /* F is created and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 7113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 712d7c3f9d8SHong Zhang } 713d7c3f9d8SHong Zhang 714cedd07caSPierre Jolivet static PetscErrorCode MatCholeskyFactor_Elemental(Mat A, IS, const MatFactorInfo *) 715d71ae5a4SJacob Faibussowitsch { 71645cf121fSXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 717e8146892SSatish Balay El::DistMatrix<PetscElemScalar, El::MC, El::STAR> d; 71845cf121fSXuan Zhou 71945cf121fSXuan Zhou PetscFunctionBegin; 720e8146892SSatish Balay El::Cholesky(El::UPPER, *a->emat); 721fc54b460SXuan Zhou A->factortype = MAT_FACTOR_CHOLESKY; 722834d3fecSHong Zhang A->assembled = PETSC_TRUE; 723f6224b95SHong Zhang 7249566063dSJacob Faibussowitsch PetscCall(PetscFree(A->solvertype)); 7259566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &A->solvertype)); 7263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72745cf121fSXuan Zhou } 72845cf121fSXuan Zhou 729d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F, Mat A, const MatFactorInfo *info) 730d71ae5a4SJacob Faibussowitsch { 731cb76c1d8SXuan Zhou PetscFunctionBegin; 7329566063dSJacob Faibussowitsch PetscCall(MatCopy(A, F, SAME_NONZERO_PATTERN)); 733f22e26b7SPierre Jolivet PetscCall(MatCholeskyFactor_Elemental(F, nullptr, info)); 7343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73579673f7bSHong Zhang } 736cb76c1d8SXuan Zhou 737cedd07caSPierre Jolivet static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat, Mat, IS, const MatFactorInfo *) 738d71ae5a4SJacob Faibussowitsch { 73979673f7bSHong Zhang PetscFunctionBegin; 740d8304050SJose E. Roman /* F is created and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 7413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74279673f7bSHong Zhang } 74379673f7bSHong Zhang 74466976f2fSJacob Faibussowitsch static PetscErrorCode MatFactorGetSolverType_elemental_elemental(Mat, MatSolverType *type) 745d71ae5a4SJacob Faibussowitsch { 74615767789SHong Zhang PetscFunctionBegin; 74715767789SHong Zhang *type = MATSOLVERELEMENTAL; 7483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74915767789SHong Zhang } 75015767789SHong Zhang 751d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetFactor_elemental_elemental(Mat A, MatFactorType ftype, Mat *F) 752d71ae5a4SJacob Faibussowitsch { 7531293973dSHong Zhang Mat B; 7541293973dSHong Zhang 7551293973dSHong Zhang PetscFunctionBegin; 7561293973dSHong Zhang /* Create the factorization matrix */ 7579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 7589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 7599566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATELEMENTAL)); 7609566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 7611293973dSHong Zhang B->factortype = ftype; 76266e17bc3SBarry Smith B->trivialsymbolic = PETSC_TRUE; 7639566063dSJacob Faibussowitsch PetscCall(PetscFree(B->solvertype)); 7649566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERELEMENTAL, &B->solvertype)); 76500c67f3bSHong Zhang 7669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatFactorGetSolverType_C", MatFactorGetSolverType_elemental_elemental)); 7671293973dSHong Zhang *F = B; 7683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7691293973dSHong Zhang } 7701293973dSHong Zhang 771d1f0640dSPierre Jolivet PETSC_INTERN PetscErrorCode MatSolverTypeRegister_Elemental(void) 772d71ae5a4SJacob Faibussowitsch { 77342c9c57cSBarry Smith PetscFunctionBegin; 7749566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERELEMENTAL, MATELEMENTAL, MAT_FACTOR_LU, MatGetFactor_elemental_elemental)); 7759566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERELEMENTAL, MATELEMENTAL, MAT_FACTOR_CHOLESKY, MatGetFactor_elemental_elemental)); 7763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77742c9c57cSBarry Smith } 77842c9c57cSBarry Smith 779d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatNorm_Elemental(Mat A, NormType type, PetscReal *nrm) 780d71ae5a4SJacob Faibussowitsch { 7811f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 7821f881ff8SXuan Zhou 7831f881ff8SXuan Zhou PetscFunctionBegin; 7841f881ff8SXuan Zhou switch (type) { 785d71ae5a4SJacob Faibussowitsch case NORM_1: 786d71ae5a4SJacob Faibussowitsch *nrm = El::OneNorm(*a->emat); 787d71ae5a4SJacob Faibussowitsch break; 788d71ae5a4SJacob Faibussowitsch case NORM_FROBENIUS: 789d71ae5a4SJacob Faibussowitsch *nrm = El::FrobeniusNorm(*a->emat); 790d71ae5a4SJacob Faibussowitsch break; 791d71ae5a4SJacob Faibussowitsch case NORM_INFINITY: 792d71ae5a4SJacob Faibussowitsch *nrm = El::InfinityNorm(*a->emat); 793d71ae5a4SJacob Faibussowitsch break; 794d71ae5a4SJacob Faibussowitsch default: 795d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Unsupported norm type"); 7961f881ff8SXuan Zhou } 7973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7981f881ff8SXuan Zhou } 7991f881ff8SXuan Zhou 800d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroEntries_Elemental(Mat A) 801d71ae5a4SJacob Faibussowitsch { 8025262d616SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 8035262d616SXuan Zhou 8045262d616SXuan Zhou PetscFunctionBegin; 805e8146892SSatish Balay El::Zero(*a->emat); 8063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8075262d616SXuan Zhou } 8085262d616SXuan Zhou 809d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A, IS *rows, IS *cols) 810d71ae5a4SJacob Faibussowitsch { 811db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 812db31f6deSJed Brown PetscInt i, m, shift, stride, *idx; 813db31f6deSJed Brown 814db31f6deSJed Brown PetscFunctionBegin; 815db31f6deSJed Brown if (rows) { 816db31f6deSJed Brown m = a->emat->LocalHeight(); 817db31f6deSJed Brown shift = a->emat->ColShift(); 818db31f6deSJed Brown stride = a->emat->ColStride(); 8199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 820db31f6deSJed Brown for (i = 0; i < m; i++) { 821db31f6deSJed Brown PetscInt rank, offset; 822db31f6deSJed Brown E2RO(A, 0, shift + i * stride, &rank, &offset); 823db31f6deSJed Brown RO2P(A, 0, rank, offset, &idx[i]); 824db31f6deSJed Brown } 8259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, rows)); 826db31f6deSJed Brown } 827db31f6deSJed Brown if (cols) { 828db31f6deSJed Brown m = a->emat->LocalWidth(); 829db31f6deSJed Brown shift = a->emat->RowShift(); 830db31f6deSJed Brown stride = a->emat->RowStride(); 8319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 832db31f6deSJed Brown for (i = 0; i < m; i++) { 833db31f6deSJed Brown PetscInt rank, offset; 834db31f6deSJed Brown E2RO(A, 1, shift + i * stride, &rank, &offset); 835db31f6deSJed Brown RO2P(A, 1, rank, offset, &idx[i]); 836db31f6deSJed Brown } 8379566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, cols)); 838db31f6deSJed Brown } 8393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 840db31f6deSJed Brown } 841db31f6deSJed Brown 842cedd07caSPierre Jolivet static PetscErrorCode MatConvert_Elemental_Dense(Mat A, MatType, MatReuse reuse, Mat *B) 843d71ae5a4SJacob Faibussowitsch { 8442ef0cf24SXuan Zhou Mat Bmpi; 845af295397SXuan Zhou Mat_Elemental *a = (Mat_Elemental *)A->data; 846ce94432eSBarry Smith MPI_Comm comm; 847fa9e26c8SHong Zhang IS isrows, iscols; 848fa9e26c8SHong Zhang PetscInt rrank, ridx, crank, cidx, nrows, ncols, i, j, erow, ecol, elrow, elcol; 849fa9e26c8SHong Zhang const PetscInt *rows, *cols; 850df311e6cSXuan Zhou PetscElemScalar v; 851fa9e26c8SHong Zhang const El::Grid &grid = a->emat->Grid(); 852af295397SXuan Zhou 853af295397SXuan Zhou PetscFunctionBegin; 8549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 855a000e53bSHong Zhang 856de0a22f0SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 857de0a22f0SHong Zhang Bmpi = *B; 858de0a22f0SHong Zhang } else { 8599566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Bmpi)); 8609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Bmpi, A->rmap->n, A->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 8619566063dSJacob Faibussowitsch PetscCall(MatSetType(Bmpi, MATDENSE)); 8629566063dSJacob Faibussowitsch PetscCall(MatSetUp(Bmpi)); 863de0a22f0SHong Zhang } 864fa9e26c8SHong Zhang 865fa9e26c8SHong Zhang /* Get local entries of A */ 8669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipIS(A, &isrows, &iscols)); 8679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrows, &nrows)); 8689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrows, &rows)); 8699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscols, &ncols)); 8709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscols, &cols)); 871fa9e26c8SHong Zhang 87257299f2fSHong Zhang if (a->roworiented) { 8732ef0cf24SXuan Zhou for (i = 0; i < nrows; i++) { 874fa9e26c8SHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */ 8752ef0cf24SXuan Zhou RO2E(A, 0, rrank, ridx, &erow); 876aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 8772ef0cf24SXuan Zhou for (j = 0; j < ncols; j++) { 878fa9e26c8SHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 8792ef0cf24SXuan Zhou RO2E(A, 1, crank, cidx, &ecol); 880aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 881fa9e26c8SHong Zhang 882fa9e26c8SHong Zhang elrow = erow / grid.MCSize(); /* Elemental local row index */ 883fa9e26c8SHong Zhang elcol = ecol / grid.MRSize(); /* Elemental local column index */ 884fa9e26c8SHong Zhang v = a->emat->GetLocal(elrow, elcol); 8859566063dSJacob Faibussowitsch PetscCall(MatSetValues(Bmpi, 1, &rows[i], 1, &cols[j], (PetscScalar *)&v, INSERT_VALUES)); 8862ef0cf24SXuan Zhou } 8872ef0cf24SXuan Zhou } 88857299f2fSHong Zhang } else { /* column-oriented */ 88957299f2fSHong Zhang for (j = 0; j < ncols; j++) { 89057299f2fSHong Zhang P2RO(A, 1, cols[j], &crank, &cidx); 89157299f2fSHong Zhang RO2E(A, 1, crank, cidx, &ecol); 892aed4548fSBarry Smith PetscCheck(crank >= 0 && cidx >= 0 && ecol >= 0, comm, PETSC_ERR_PLIB, "Incorrect col translation"); 89357299f2fSHong Zhang for (i = 0; i < nrows; i++) { 89457299f2fSHong Zhang P2RO(A, 0, rows[i], &rrank, &ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */ 89557299f2fSHong Zhang RO2E(A, 0, rrank, ridx, &erow); 896aed4548fSBarry Smith PetscCheck(rrank >= 0 && ridx >= 0 && erow >= 0, comm, PETSC_ERR_PLIB, "Incorrect row translation"); 89757299f2fSHong Zhang 89857299f2fSHong Zhang elrow = erow / grid.MCSize(); /* Elemental local row index */ 89957299f2fSHong Zhang elcol = ecol / grid.MRSize(); /* Elemental local column index */ 90057299f2fSHong Zhang v = a->emat->GetLocal(elrow, elcol); 9019566063dSJacob Faibussowitsch PetscCall(MatSetValues(Bmpi, 1, &rows[i], 1, &cols[j], (PetscScalar *)&v, INSERT_VALUES)); 90257299f2fSHong Zhang } 90357299f2fSHong Zhang } 90457299f2fSHong Zhang } 9059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Bmpi, MAT_FINAL_ASSEMBLY)); 9069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Bmpi, MAT_FINAL_ASSEMBLY)); 907511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9089566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &Bmpi)); 909c4ad791aSXuan Zhou } else { 910c4ad791aSXuan Zhou *B = Bmpi; 911c4ad791aSXuan Zhou } 9129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrows)); 9139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscols)); 9143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 915af295397SXuan Zhou } 916af295397SXuan Zhou 917cedd07caSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_Elemental(Mat A, MatType, MatReuse reuse, Mat *newmat) 918d71ae5a4SJacob Faibussowitsch { 919af8000cdSHong Zhang Mat mat_elemental; 920af8000cdSHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols; 921af8000cdSHong Zhang const PetscInt *cols; 922af8000cdSHong Zhang const PetscScalar *vals; 923af8000cdSHong Zhang 924af8000cdSHong Zhang PetscFunctionBegin; 925bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 926bdeae278SStefano Zampini mat_elemental = *newmat; 9279566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 928bdeae278SStefano Zampini } else { 9299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 9309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 9319566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 9329566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 933bdeae278SStefano Zampini } 934af8000cdSHong Zhang for (row = 0; row < M; row++) { 9359566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 936bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 9379566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 9389566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 939af8000cdSHong Zhang } 9409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 9419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 942af8000cdSHong Zhang 943511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9449566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 945af8000cdSHong Zhang } else { 946af8000cdSHong Zhang *newmat = mat_elemental; 947af8000cdSHong Zhang } 9483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 949af8000cdSHong Zhang } 950af8000cdSHong Zhang 951cedd07caSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat A, MatType, MatReuse reuse, Mat *newmat) 952d71ae5a4SJacob Faibussowitsch { 9535d7652ecSHong Zhang Mat mat_elemental; 9545d7652ecSHong Zhang PetscInt row, ncols, rstart = A->rmap->rstart, rend = A->rmap->rend, j; 9555d7652ecSHong Zhang const PetscInt *cols; 9565d7652ecSHong Zhang const PetscScalar *vals; 9575d7652ecSHong Zhang 9585d7652ecSHong Zhang PetscFunctionBegin; 959bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 960bdeae278SStefano Zampini mat_elemental = *newmat; 9619566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 962bdeae278SStefano Zampini } else { 9639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 9649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 9659566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 9669566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 967bdeae278SStefano Zampini } 9685d7652ecSHong Zhang for (row = rstart; row < rend; row++) { 9699566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 9705d7652ecSHong Zhang for (j = 0; j < ncols; j++) { 971bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 9729566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, 1, &cols[j], &vals[j], ADD_VALUES)); 9735d7652ecSHong Zhang } 9749566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 9755d7652ecSHong Zhang } 9769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 9779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 9785d7652ecSHong Zhang 979511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 9809566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 9815d7652ecSHong Zhang } else { 9825d7652ecSHong Zhang *newmat = mat_elemental; 9835d7652ecSHong Zhang } 9843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9855d7652ecSHong Zhang } 9865d7652ecSHong Zhang 987cedd07caSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat A, MatType, MatReuse reuse, Mat *newmat) 988d71ae5a4SJacob Faibussowitsch { 9896214f412SHong Zhang Mat mat_elemental; 9906214f412SHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols, j; 9916214f412SHong Zhang const PetscInt *cols; 9926214f412SHong Zhang const PetscScalar *vals; 9936214f412SHong Zhang 9946214f412SHong Zhang PetscFunctionBegin; 995bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 996bdeae278SStefano Zampini mat_elemental = *newmat; 9979566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 998bdeae278SStefano Zampini } else { 9999566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 10009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 10019566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 10029566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 1003bdeae278SStefano Zampini } 10049566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 10056214f412SHong Zhang for (row = 0; row < M; row++) { 10069566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 1007bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 10089566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 10096214f412SHong Zhang for (j = 0; j < ncols; j++) { /* lower triangular part */ 1010eb1ec7c1SStefano Zampini PetscScalar v; 10116214f412SHong Zhang if (cols[j] == row) continue; 1012b94d7dedSBarry Smith v = A->hermitian == PETSC_BOOL3_TRUE ? PetscConj(vals[j]) : vals[j]; 10139566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &cols[j], 1, &row, &v, ADD_VALUES)); 10146214f412SHong Zhang } 10159566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 10166214f412SHong Zhang } 10179566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 10189566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 10199566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 10206214f412SHong Zhang 1021511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 10229566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 10236214f412SHong Zhang } else { 10246214f412SHong Zhang *newmat = mat_elemental; 10256214f412SHong Zhang } 10263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10276214f412SHong Zhang } 10286214f412SHong Zhang 1029cedd07caSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat A, MatType, MatReuse reuse, Mat *newmat) 1030d71ae5a4SJacob Faibussowitsch { 10316214f412SHong Zhang Mat mat_elemental; 10326214f412SHong Zhang PetscInt M = A->rmap->N, N = A->cmap->N, row, ncols, j, rstart = A->rmap->rstart, rend = A->rmap->rend; 10336214f412SHong Zhang const PetscInt *cols; 10346214f412SHong Zhang const PetscScalar *vals; 10356214f412SHong Zhang 10366214f412SHong Zhang PetscFunctionBegin; 1037bdeae278SStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 1038bdeae278SStefano Zampini mat_elemental = *newmat; 10399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat_elemental)); 1040bdeae278SStefano Zampini } else { 10419566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 10429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, M, N)); 10439566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 10449566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 1045bdeae278SStefano Zampini } 10469566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 10476214f412SHong Zhang for (row = rstart; row < rend; row++) { 10489566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, row, &ncols, &cols, &vals)); 1049bdeae278SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 10509566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &row, ncols, cols, vals, ADD_VALUES)); 10516214f412SHong Zhang for (j = 0; j < ncols; j++) { /* lower triangular part */ 1052eb1ec7c1SStefano Zampini PetscScalar v; 10536214f412SHong Zhang if (cols[j] == row) continue; 1054b94d7dedSBarry Smith v = A->hermitian == PETSC_BOOL3_TRUE ? PetscConj(vals[j]) : vals[j]; 10559566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, 1, &cols[j], 1, &row, &v, ADD_VALUES)); 10566214f412SHong Zhang } 10579566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, row, &ncols, &cols, &vals)); 10586214f412SHong Zhang } 10599566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 10609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 10619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 10626214f412SHong Zhang 1063511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 10649566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 10656214f412SHong Zhang } else { 10666214f412SHong Zhang *newmat = mat_elemental; 10676214f412SHong Zhang } 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10696214f412SHong Zhang } 10706214f412SHong Zhang 1071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_Elemental(Mat A) 1072d71ae5a4SJacob Faibussowitsch { 1073db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 10745e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 10755e9f5b67SHong Zhang PetscBool flg; 10765e9f5b67SHong Zhang MPI_Comm icomm; 1077db31f6deSJed Brown 1078db31f6deSJed Brown PetscFunctionBegin; 1079db31f6deSJed Brown delete a->emat; 1080ea394475SSatish Balay delete a->P; 1081ea394475SSatish Balay delete a->Q; 10825e9f5b67SHong Zhang 1083e8146892SSatish Balay El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 1084f22e26b7SPierre Jolivet PetscCall(PetscCommDuplicate(cxxcomm.comm, &icomm, nullptr)); 10859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Elemental_keyval, (void **)&commgrid, (int *)&flg)); 10865e9f5b67SHong Zhang if (--commgrid->grid_refct == 0) { 10875e9f5b67SHong Zhang delete commgrid->grid; 10889566063dSJacob Faibussowitsch PetscCall(PetscFree(commgrid)); 10899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Elemental_keyval)); 10905e9f5b67SHong Zhang } 10919566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&icomm)); 1092f22e26b7SPierre Jolivet PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatGetOwnershipIS_C", nullptr)); 1093f22e26b7SPierre Jolivet PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", nullptr)); 1094f22e26b7SPierre Jolivet PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_elemental_mpidense_C", nullptr)); 10959566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 10963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1097db31f6deSJed Brown } 1098db31f6deSJed Brown 109966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_Elemental(Mat A) 1100d71ae5a4SJacob Faibussowitsch { 1101db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental *)A->data; 1102f19600a0SHong Zhang MPI_Comm comm; 1103db31f6deSJed Brown PetscMPIInt rsize, csize; 1104f19600a0SHong Zhang PetscInt n; 1105db31f6deSJed Brown 1106db31f6deSJed Brown PetscFunctionBegin; 11079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 11089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1109db31f6deSJed Brown 1110d8304050SJose E. Roman /* Check if local row and column sizes are equally distributed. 1111f19600a0SHong Zhang Jed: Elemental uses "element" cyclic ordering so the sizes need to match that 1112f19600a0SHong Zhang exactly. The strategy in MatElemental is for PETSc to implicitly permute to block ordering (like would be returned by 1113d8304050SJose E. Roman PetscSplitOwnership(comm,&n,&N), at which point Elemental matrices can act on PETSc vectors without redistributing the vectors. */ 11149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1115f19600a0SHong Zhang n = PETSC_DECIDE; 11169566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm, &n, &A->rmap->N)); 11175f80ce2aSJacob Faibussowitsch PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local row size %" PetscInt_FMT " of ELEMENTAL matrix must be equally distributed", A->rmap->n); 1118f19600a0SHong Zhang 1119f19600a0SHong Zhang n = PETSC_DECIDE; 11209566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm, &n, &A->cmap->N)); 11215f80ce2aSJacob Faibussowitsch PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Local column size %" PetscInt_FMT " of ELEMENTAL matrix must be equally distributed", A->cmap->n); 1122f19600a0SHong Zhang 11232f613bf5SBarry Smith a->emat->Resize(A->rmap->N, A->cmap->N); 1124e8146892SSatish Balay El::Zero(*a->emat); 1125db31f6deSJed Brown 11269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(A->rmap->comm, &rsize)); 11279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(A->cmap->comm, &csize)); 11285f80ce2aSJacob Faibussowitsch PetscCheck(csize == rsize, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_INCOMP, "Cannot use row and column communicators of different sizes"); 1129db31f6deSJed Brown a->commsize = rsize; 11309371c9d4SSatish Balay a->mr[0] = A->rmap->N % rsize; 11319371c9d4SSatish Balay if (!a->mr[0]) a->mr[0] = rsize; 11329371c9d4SSatish Balay a->mr[1] = A->cmap->N % csize; 11339371c9d4SSatish Balay if (!a->mr[1]) a->mr[1] = csize; 1134db31f6deSJed Brown a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 1135db31f6deSJed Brown a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 11363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1137db31f6deSJed Brown } 1138db31f6deSJed Brown 113966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType) 1140d71ae5a4SJacob Faibussowitsch { 1141aae2c449SHong Zhang Mat_Elemental *a = (Mat_Elemental *)A->data; 1142aae2c449SHong Zhang 1143aae2c449SHong Zhang PetscFunctionBegin; 1144fbbcb730SJack Poulson /* printf("Calling ProcessQueues\n"); */ 1145fbbcb730SJack Poulson a->emat->ProcessQueues(); 1146fbbcb730SJack Poulson /* printf("Finished ProcessQueues\n"); */ 11473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1148aae2c449SHong Zhang } 1149aae2c449SHong Zhang 115066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_Elemental(Mat, MatAssemblyType) 1151d71ae5a4SJacob Faibussowitsch { 1152aae2c449SHong Zhang PetscFunctionBegin; 1153aae2c449SHong Zhang /* Currently does nothing */ 11543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1155aae2c449SHong Zhang } 1156aae2c449SHong Zhang 115766976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_Elemental(Mat newMat, PetscViewer viewer) 1158d71ae5a4SJacob Faibussowitsch { 11597b30e0f1SHong Zhang Mat Adense, Ae; 11607b30e0f1SHong Zhang MPI_Comm comm; 11617b30e0f1SHong Zhang 11627b30e0f1SHong Zhang PetscFunctionBegin; 11639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)newMat, &comm)); 11649566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &Adense)); 11659566063dSJacob Faibussowitsch PetscCall(MatSetType(Adense, MATDENSE)); 11669566063dSJacob Faibussowitsch PetscCall(MatLoad(Adense, viewer)); 11679566063dSJacob Faibussowitsch PetscCall(MatConvert(Adense, MATELEMENTAL, MAT_INITIAL_MATRIX, &Ae)); 11689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Adense)); 11699566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(newMat, &Ae)); 11703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11717b30e0f1SHong Zhang } 11727b30e0f1SHong Zhang 11739371c9d4SSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_Elemental, 1174f22e26b7SPierre Jolivet nullptr, 1175f22e26b7SPierre Jolivet nullptr, 117640d92e34SHong Zhang MatMult_Elemental, 117740d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental, 11789426833fSXuan Zhou MatMultTranspose_Elemental, 1179e883f9d5SXuan Zhou MatMultTransposeAdd_Elemental, 118040d92e34SHong Zhang MatSolve_Elemental, 1181df311e6cSXuan Zhou MatSolveAdd_Elemental, 1182f22e26b7SPierre Jolivet nullptr, 1183f22e26b7SPierre Jolivet /*10*/ nullptr, 118440d92e34SHong Zhang MatLUFactor_Elemental, 118540d92e34SHong Zhang MatCholeskyFactor_Elemental, 1186f22e26b7SPierre Jolivet nullptr, 118740d92e34SHong Zhang MatTranspose_Elemental, 118840d92e34SHong Zhang /*15*/ MatGetInfo_Elemental, 1189f22e26b7SPierre Jolivet nullptr, 119061119200SXuan Zhou MatGetDiagonal_Elemental, 1191ade3cc5eSXuan Zhou MatDiagonalScale_Elemental, 119240d92e34SHong Zhang MatNorm_Elemental, 119340d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental, 119440d92e34SHong Zhang MatAssemblyEnd_Elemental, 119532d7a744SHong Zhang MatSetOption_Elemental, 119640d92e34SHong Zhang MatZeroEntries_Elemental, 1197f22e26b7SPierre Jolivet /*24*/ nullptr, 119840d92e34SHong Zhang MatLUFactorSymbolic_Elemental, 119940d92e34SHong Zhang MatLUFactorNumeric_Elemental, 120040d92e34SHong Zhang MatCholeskyFactorSymbolic_Elemental, 120140d92e34SHong Zhang MatCholeskyFactorNumeric_Elemental, 120240d92e34SHong Zhang /*29*/ MatSetUp_Elemental, 1203f22e26b7SPierre Jolivet nullptr, 1204f22e26b7SPierre Jolivet nullptr, 1205f22e26b7SPierre Jolivet nullptr, 1206f22e26b7SPierre Jolivet nullptr, 1207df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental, 1208f22e26b7SPierre Jolivet nullptr, 1209f22e26b7SPierre Jolivet nullptr, 1210f22e26b7SPierre Jolivet nullptr, 1211f22e26b7SPierre Jolivet nullptr, 121240d92e34SHong Zhang /*39*/ MatAXPY_Elemental, 1213f22e26b7SPierre Jolivet nullptr, 1214f22e26b7SPierre Jolivet nullptr, 1215f22e26b7SPierre Jolivet nullptr, 121640d92e34SHong Zhang MatCopy_Elemental, 1217f22e26b7SPierre Jolivet /*44*/ nullptr, 121840d92e34SHong Zhang MatScale_Elemental, 12197d68702bSBarry Smith MatShift_Basic, 1220f22e26b7SPierre Jolivet nullptr, 1221f22e26b7SPierre Jolivet nullptr, 1222f22e26b7SPierre Jolivet /*49*/ nullptr, 1223f22e26b7SPierre Jolivet nullptr, 1224f22e26b7SPierre Jolivet nullptr, 1225f22e26b7SPierre Jolivet nullptr, 1226f22e26b7SPierre Jolivet nullptr, 1227f22e26b7SPierre Jolivet /*54*/ nullptr, 1228f22e26b7SPierre Jolivet nullptr, 1229f22e26b7SPierre Jolivet nullptr, 1230f22e26b7SPierre Jolivet nullptr, 1231f22e26b7SPierre Jolivet nullptr, 1232f22e26b7SPierre Jolivet /*59*/ nullptr, 123340d92e34SHong Zhang MatDestroy_Elemental, 123440d92e34SHong Zhang MatView_Elemental, 1235f22e26b7SPierre Jolivet nullptr, 1236f22e26b7SPierre Jolivet nullptr, 1237f22e26b7SPierre Jolivet /*64*/ nullptr, 1238f22e26b7SPierre Jolivet nullptr, 1239f22e26b7SPierre Jolivet nullptr, 1240f22e26b7SPierre Jolivet nullptr, 1241f22e26b7SPierre Jolivet nullptr, 1242f22e26b7SPierre Jolivet /*69*/ nullptr, 12432ef0cf24SXuan Zhou MatConvert_Elemental_Dense, 1244f22e26b7SPierre Jolivet nullptr, 1245f22e26b7SPierre Jolivet nullptr, 1246*8bb0f5c6SPierre Jolivet nullptr, 1247f22e26b7SPierre Jolivet /*74*/ nullptr, 1248f22e26b7SPierre Jolivet nullptr, 1249f22e26b7SPierre Jolivet nullptr, 1250f22e26b7SPierre Jolivet nullptr, 1251*8bb0f5c6SPierre Jolivet MatLoad_Elemental, 1252f22e26b7SPierre Jolivet /*79*/ nullptr, 1253f22e26b7SPierre Jolivet nullptr, 1254f22e26b7SPierre Jolivet nullptr, 1255f22e26b7SPierre Jolivet nullptr, 1256*8bb0f5c6SPierre Jolivet nullptr, 1257f22e26b7SPierre Jolivet /*84*/ nullptr, 125840d92e34SHong Zhang MatMatMultNumeric_Elemental, 1259f22e26b7SPierre Jolivet nullptr, 1260f22e26b7SPierre Jolivet nullptr, 1261df311e6cSXuan Zhou MatMatTransposeMultNumeric_Elemental, 1262*8bb0f5c6SPierre Jolivet /*89*/ nullptr, 1263*8bb0f5c6SPierre Jolivet MatProductSetFromOptions_Elemental, 1264f22e26b7SPierre Jolivet nullptr, 1265f22e26b7SPierre Jolivet nullptr, 1266dfcb0403SXuan Zhou MatConjugate_Elemental, 1267*8bb0f5c6SPierre Jolivet /*94*/ nullptr, 1268f22e26b7SPierre Jolivet nullptr, 1269f22e26b7SPierre Jolivet nullptr, 1270f22e26b7SPierre Jolivet nullptr, 1271f22e26b7SPierre Jolivet nullptr, 1272*8bb0f5c6SPierre Jolivet /*99*/ nullptr, 1273*8bb0f5c6SPierre Jolivet MatMatSolve_Elemental, 1274f22e26b7SPierre Jolivet nullptr, 1275f22e26b7SPierre Jolivet nullptr, 1276f22e26b7SPierre Jolivet nullptr, 1277*8bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_Elemental, 1278*8bb0f5c6SPierre Jolivet nullptr, 1279*8bb0f5c6SPierre Jolivet nullptr, 1280*8bb0f5c6SPierre Jolivet nullptr, 1281*8bb0f5c6SPierre Jolivet nullptr, 1282*8bb0f5c6SPierre Jolivet /*109*/ nullptr, 1283*8bb0f5c6SPierre Jolivet nullptr, 1284*8bb0f5c6SPierre Jolivet MatHermitianTranspose_Elemental, 1285*8bb0f5c6SPierre Jolivet nullptr, 1286*8bb0f5c6SPierre Jolivet nullptr, 1287f22e26b7SPierre Jolivet /*114*/ nullptr, 1288f22e26b7SPierre Jolivet nullptr, 1289f22e26b7SPierre Jolivet nullptr, 1290f22e26b7SPierre Jolivet nullptr, 1291f22e26b7SPierre Jolivet nullptr, 1292f22e26b7SPierre Jolivet /*119*/ nullptr, 1293*8bb0f5c6SPierre Jolivet nullptr, 1294f22e26b7SPierre Jolivet nullptr, 1295f22e26b7SPierre Jolivet nullptr, 1296f22e26b7SPierre Jolivet nullptr, 1297f22e26b7SPierre Jolivet /*124*/ nullptr, 1298f22e26b7SPierre Jolivet nullptr, 1299f22e26b7SPierre Jolivet nullptr, 1300f22e26b7SPierre Jolivet nullptr, 1301f22e26b7SPierre Jolivet nullptr, 1302f22e26b7SPierre Jolivet /*129*/ nullptr, 1303f22e26b7SPierre Jolivet nullptr, 1304f22e26b7SPierre Jolivet nullptr, 1305f22e26b7SPierre Jolivet nullptr, 1306f22e26b7SPierre Jolivet nullptr, 1307f22e26b7SPierre Jolivet /*134*/ nullptr, 1308f22e26b7SPierre Jolivet nullptr, 1309f22e26b7SPierre Jolivet nullptr, 1310f22e26b7SPierre Jolivet nullptr, 1311f22e26b7SPierre Jolivet nullptr, 1312f22e26b7SPierre Jolivet nullptr, 1313f22e26b7SPierre Jolivet /*140*/ nullptr, 1314f22e26b7SPierre Jolivet nullptr, 1315f22e26b7SPierre Jolivet nullptr}; 131640d92e34SHong Zhang 1317ed36708cSHong Zhang /*MC 1318ed36708cSHong Zhang MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1319ed36708cSHong Zhang 1320c2b89b5dSBarry Smith Use ./configure --download-elemental to install PETSc to use Elemental 1321c2b89b5dSBarry Smith 1322ed36708cSHong Zhang Options Database Keys: 13235cc86fc1SJed Brown + -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 132489bba20eSBarry Smith . -pc_factor_mat_solver_type elemental - to use this direct solver with the option -pc_type lu 13255cc86fc1SJed Brown - -mat_elemental_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix 1326ed36708cSHong Zhang 1327ed36708cSHong Zhang Level: beginner 1328ed36708cSHong Zhang 132989bba20eSBarry Smith Note: 133089bba20eSBarry Smith Note unlike most matrix formats, this format does not store all the matrix entries for a contiguous 133189bba20eSBarry Smith range of rows on an MPI rank. Use `MatGetOwnershipIS()` to determine what values are stored on 133289bba20eSBarry Smith the given rank. 133389bba20eSBarry Smith 133489bba20eSBarry Smith .seealso: `MATDENSE`, `MATSCALAPACK`, `MatGetOwnershipIS()` 1335ed36708cSHong Zhang M*/ 1336f22e26b7SPierre Jolivet #if defined(__clang__) 1337f22e26b7SPierre Jolivet #pragma clang diagnostic push 1338f22e26b7SPierre Jolivet #pragma clang diagnostic ignored "-Wzero-as-null-pointer-constant" 1339f22e26b7SPierre Jolivet #endif 1340d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A) 1341d71ae5a4SJacob Faibussowitsch { 1342db31f6deSJed Brown Mat_Elemental *a; 13435682a260SJack Poulson PetscBool flg, flg1; 13445e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 13455e9f5b67SHong Zhang MPI_Comm icomm; 13465682a260SJack Poulson PetscInt optv1; 1347db31f6deSJed Brown 1348db31f6deSJed Brown PetscFunctionBegin; 1349aea10558SJacob Faibussowitsch A->ops[0] = MatOps_Values; 135040d92e34SHong Zhang A->insertmode = NOT_SET_VALUES; 1351db31f6deSJed Brown 13524dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1353db31f6deSJed Brown A->data = (void *)a; 1354db31f6deSJed Brown 1355db31f6deSJed Brown /* Set up the elemental matrix */ 1356e8146892SSatish Balay El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 13575e9f5b67SHong Zhang 13585e9f5b67SHong Zhang /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 13595e9f5b67SHong Zhang if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1360c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Elemental_keyval, nullptr)); 13619566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ElementalCitation, &ElementalCite)); 13625e9f5b67SHong Zhang } 13639566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(cxxcomm.comm, &icomm, NULL)); 13649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Elemental_keyval, (void **)&commgrid, (int *)&flg)); 13655e9f5b67SHong Zhang if (!flg) { 13664dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&commgrid)); 13675cb544a0SHong Zhang 1368d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)A), ((PetscObject)A)->prefix, "Elemental Options", "Mat"); 1369e8146892SSatish Balay /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until El::Grid() is called */ 13709566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_elemental_grid_height", "Grid Height", "None", El::mpi::Size(cxxcomm), &optv1, &flg1)); 13715682a260SJack Poulson if (flg1) { 1372aed4548fSBarry Smith PetscCheck((El::mpi::Size(cxxcomm) % optv1) == 0, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_INCOMP, "Grid Height %" PetscInt_FMT " must evenly divide CommSize %" PetscInt_FMT, optv1, (PetscInt)El::mpi::Size(cxxcomm)); 1373e8146892SSatish Balay commgrid->grid = new El::Grid(cxxcomm, optv1); /* use user-provided grid height */ 13742ef0cf24SXuan Zhou } else { 1375e8146892SSatish Balay commgrid->grid = new El::Grid(cxxcomm); /* use Elemental default grid sizes */ 1376da0640a4SHong Zhang /* printf("new commgrid->grid = %p\n",commgrid->grid); -- memory leak revealed by valgrind? */ 1377ed667823SXuan Zhou } 13785e9f5b67SHong Zhang commgrid->grid_refct = 1; 13799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_set_attr(icomm, Petsc_Elemental_keyval, (void *)commgrid)); 1380ea394475SSatish Balay 1381ea394475SSatish Balay a->pivoting = 1; 13829566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_elemental_pivoting", "Pivoting", "None", a->pivoting, &a->pivoting, NULL)); 1383ea394475SSatish Balay 1384d0609cedSBarry Smith PetscOptionsEnd(); 13855e9f5b67SHong Zhang } else { 13865e9f5b67SHong Zhang commgrid->grid_refct++; 13875e9f5b67SHong Zhang } 13889566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&icomm)); 13895e9f5b67SHong Zhang a->grid = commgrid->grid; 1390e8146892SSatish Balay a->emat = new El::DistMatrix<PetscElemScalar>(*a->grid); 139132d7a744SHong Zhang a->roworiented = PETSC_TRUE; 1392db31f6deSJed Brown 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatGetOwnershipIS_C", MatGetOwnershipIS_Elemental)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_elemental_mpidense_C", MatProductSetFromOptions_Elemental_MPIDense)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, MATELEMENTAL)); 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1397db31f6deSJed Brown } 1398f22e26b7SPierre Jolivet #if defined(__clang__) 1399f22e26b7SPierre Jolivet #pragma clang diagnostic pop 1400f22e26b7SPierre Jolivet #endif 1401