xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 8cc058d9cd56c1ccb3be12a47760ddfc446aaffc)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
170298fd71SBarry Smith .  path - the dynamic library path or NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57db31f6deSJed Brown #undef __FUNCT__
58db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
59db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
60db31f6deSJed Brown {
61db31f6deSJed Brown   PetscErrorCode ierr;
62db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
63db31f6deSJed Brown   PetscBool      iascii;
64db31f6deSJed Brown 
65db31f6deSJed Brown   PetscFunctionBegin;
66db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
67db31f6deSJed Brown   if (iascii) {
68db31f6deSJed Brown     PetscViewerFormat format;
69db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
70db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
7179673f7bSHong Zhang       /* call elemental viewing function */
722d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
73ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
74ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
754fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
7679673f7bSHong Zhang         /* call elemental viewing function */
77ce94432eSBarry Smith         ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"test matview_elemental 2\n");CHKERRQ(ierr);
784fe7bbcaSHong Zhang       }
7979673f7bSHong Zhang 
80db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
81db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
82db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
83db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
84db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
85834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
8661119200SXuan Zhou         Mat Adense;
87ce94432eSBarry Smith         ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
8861119200SXuan Zhou         ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
8961119200SXuan Zhou         ierr = MatView(Adense,viewer);CHKERRQ(ierr);
9061119200SXuan Zhou         ierr = MatDestroy(&Adense);CHKERRQ(ierr);
91834d3fecSHong Zhang       }
92ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Format");
93d2daa67eSHong Zhang   } else {
945cb544a0SHong Zhang     /* convert to dense format and call MatView() */
9561119200SXuan Zhou     Mat Adense;
96ce94432eSBarry Smith     ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
9761119200SXuan Zhou     ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
9861119200SXuan Zhou     ierr = MatView(Adense,viewer);CHKERRQ(ierr);
9961119200SXuan Zhou     ierr = MatDestroy(&Adense);CHKERRQ(ierr);
100d2daa67eSHong Zhang   }
101db31f6deSJed Brown   PetscFunctionReturn(0);
102db31f6deSJed Brown }
103db31f6deSJed Brown 
104db31f6deSJed Brown #undef __FUNCT__
105180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
10615767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
107180a43e4SHong Zhang {
10815767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
10915767789SHong Zhang   PetscMPIInt    rank;
11015767789SHong Zhang 
111180a43e4SHong Zhang   PetscFunctionBegin;
112ce94432eSBarry Smith   MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);
11315767789SHong Zhang 
11415767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
1155cb544a0SHong Zhang   info->block_size     = 1.0;
11615767789SHong Zhang 
11715767789SHong Zhang   if (flag == MAT_LOCAL) {
11815767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
11915767789SHong Zhang     info->nz_used        = info->nz_allocated;
12015767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
121ce94432eSBarry Smith     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
12215767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
12315767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
12415767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
12515767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
12615767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
12715767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
128ce94432eSBarry Smith     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
12915767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
13015767789SHong Zhang   }
13115767789SHong Zhang 
13215767789SHong Zhang   info->nz_unneeded       = 0.0;
13315767789SHong Zhang   info->assemblies        = (double)A->num_ass;
13415767789SHong Zhang   info->mallocs           = 0;
13515767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
13615767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
13715767789SHong Zhang   info->fill_ratio_needed = 0;
13815767789SHong Zhang   info->factor_mallocs    = 0;
139180a43e4SHong Zhang   PetscFunctionReturn(0);
140180a43e4SHong Zhang }
141180a43e4SHong Zhang 
142180a43e4SHong Zhang #undef __FUNCT__
143db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
144e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
145db31f6deSJed Brown {
146db31f6deSJed Brown   PetscErrorCode ierr;
147db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
148db31f6deSJed Brown   PetscMPIInt    rank;
149db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
150db31f6deSJed Brown 
151db31f6deSJed Brown   PetscFunctionBegin;
152ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
153db31f6deSJed Brown 
154db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
155db31f6deSJed Brown   for (i=0; i<nr; i++) {
156db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
157db31f6deSJed Brown     if (rows[i] < 0) continue;
158db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
159db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
160ce94432eSBarry Smith     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect row translation");
161db31f6deSJed Brown     for (j=0; j<nc; j++) {
162db31f6deSJed Brown       if (cols[j] < 0) continue;
163db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
164db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
165ce94432eSBarry Smith       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect col translation");
166aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
167aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
168aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
169e6dea9dbSXuan Zhou         a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]);
170aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
171aae2c449SHong Zhang         continue;
172ed36708cSHong Zhang       }
173db31f6deSJed Brown       elrow = erow / grid.MCSize();
174db31f6deSJed Brown       elcol = ecol / grid.MRSize();
175db31f6deSJed Brown       switch (imode) {
176e6dea9dbSXuan Zhou       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
177e6dea9dbSXuan Zhou       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
178ce94432eSBarry Smith       default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
179db31f6deSJed Brown       }
180db31f6deSJed Brown     }
181db31f6deSJed Brown   }
182db31f6deSJed Brown   PetscFunctionReturn(0);
183db31f6deSJed Brown }
184db31f6deSJed Brown 
185db31f6deSJed Brown #undef __FUNCT__
186db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
187db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
188db31f6deSJed Brown {
189db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
190db31f6deSJed Brown   PetscErrorCode        ierr;
191e6dea9dbSXuan Zhou   const PetscElemScalar *x;
192e6dea9dbSXuan Zhou   PetscElemScalar       *y;
193df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
194db31f6deSJed Brown 
195db31f6deSJed Brown   PetscFunctionBegin;
196e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
197e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
198db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
199df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
200df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
201db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
202db31f6deSJed Brown   }
203e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
204e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
205db31f6deSJed Brown   PetscFunctionReturn(0);
206db31f6deSJed Brown }
207db31f6deSJed Brown 
208db31f6deSJed Brown #undef __FUNCT__
2099426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2109426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2119426833fSXuan Zhou {
2129426833fSXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
2139426833fSXuan Zhou   PetscErrorCode        ierr;
214df311e6cSXuan Zhou   const PetscElemScalar *x;
215df311e6cSXuan Zhou   PetscElemScalar       *y;
216e6dea9dbSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
2179426833fSXuan Zhou 
2189426833fSXuan Zhou   PetscFunctionBegin;
219e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
220e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2219426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
222df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
223df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2249426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2259426833fSXuan Zhou   }
226e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
227e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2289426833fSXuan Zhou   PetscFunctionReturn(0);
2299426833fSXuan Zhou }
2309426833fSXuan Zhou 
2319426833fSXuan Zhou #undef __FUNCT__
232db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
233db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
234db31f6deSJed Brown {
235db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
236db31f6deSJed Brown   PetscErrorCode        ierr;
237df311e6cSXuan Zhou   const PetscElemScalar *x;
238df311e6cSXuan Zhou   PetscElemScalar       *z;
239e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
240db31f6deSJed Brown 
241db31f6deSJed Brown   PetscFunctionBegin;
242db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
243e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
244e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
245db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
246df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
247df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
248db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
249db31f6deSJed Brown   }
250e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
251e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
252db31f6deSJed Brown   PetscFunctionReturn(0);
253db31f6deSJed Brown }
254db31f6deSJed Brown 
255db31f6deSJed Brown #undef __FUNCT__
256e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
257e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
258e883f9d5SXuan Zhou {
259e883f9d5SXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
260e883f9d5SXuan Zhou   PetscErrorCode        ierr;
261df311e6cSXuan Zhou   const PetscElemScalar *x;
262df311e6cSXuan Zhou   PetscElemScalar       *z;
263e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
264e883f9d5SXuan Zhou 
265e883f9d5SXuan Zhou   PetscFunctionBegin;
266e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
267e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
268e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
269e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
270df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
271df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
272e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
273e883f9d5SXuan Zhou   }
274e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
275e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
276e883f9d5SXuan Zhou   PetscFunctionReturn(0);
277e883f9d5SXuan Zhou }
278e883f9d5SXuan Zhou 
279e883f9d5SXuan Zhou #undef __FUNCT__
2809a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
2819a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
282c1d1b975SXuan Zhou {
283c1d1b975SXuan Zhou   Mat_Elemental    *a = (Mat_Elemental*)A->data;
284c1d1b975SXuan Zhou   Mat_Elemental    *b = (Mat_Elemental*)B->data;
2859a9e8502SHong Zhang   Mat_Elemental    *c = (Mat_Elemental*)C->data;
286e6dea9dbSXuan Zhou   PetscElemScalar  one = 1,zero = 0;
287c1d1b975SXuan Zhou 
288c1d1b975SXuan Zhou   PetscFunctionBegin;
289aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
290c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
291aae2c449SHong Zhang   }
2929a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
2939a9e8502SHong Zhang   PetscFunctionReturn(0);
2949a9e8502SHong Zhang }
2959a9e8502SHong Zhang 
2969a9e8502SHong Zhang #undef __FUNCT__
2979a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
2989a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
2999a9e8502SHong Zhang {
3009a9e8502SHong Zhang   PetscErrorCode ierr;
3019a9e8502SHong Zhang   Mat            Ce;
302ce94432eSBarry Smith   MPI_Comm       comm;
3039a9e8502SHong Zhang 
3049a9e8502SHong Zhang   PetscFunctionBegin;
305ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
3069a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3079a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3089a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3099a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3109a9e8502SHong Zhang   *C = Ce;
3119a9e8502SHong Zhang   PetscFunctionReturn(0);
3129a9e8502SHong Zhang }
3139a9e8502SHong Zhang 
3149a9e8502SHong Zhang #undef __FUNCT__
3159a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3169a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3179a9e8502SHong Zhang {
3189a9e8502SHong Zhang   PetscErrorCode ierr;
3199a9e8502SHong Zhang 
3209a9e8502SHong Zhang   PetscFunctionBegin;
3219a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3229a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3239a9e8502SHong Zhang   }
3249a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
325c1d1b975SXuan Zhou   PetscFunctionReturn(0);
326c1d1b975SXuan Zhou }
327c1d1b975SXuan Zhou 
328c1d1b975SXuan Zhou #undef __FUNCT__
329df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
330df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
331df311e6cSXuan Zhou {
332df311e6cSXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
333df311e6cSXuan Zhou   Mat_Elemental      *b = (Mat_Elemental*)B->data;
334df311e6cSXuan Zhou   Mat_Elemental      *c = (Mat_Elemental*)C->data;
335e6dea9dbSXuan Zhou   PetscElemScalar    one = 1,zero = 0;
336df311e6cSXuan Zhou 
337df311e6cSXuan Zhou   PetscFunctionBegin;
338df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
339df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
340df311e6cSXuan Zhou   }
341df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
342df311e6cSXuan Zhou   PetscFunctionReturn(0);
343df311e6cSXuan Zhou }
344df311e6cSXuan Zhou 
345df311e6cSXuan Zhou #undef __FUNCT__
346df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
347df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
348df311e6cSXuan Zhou {
349df311e6cSXuan Zhou   PetscErrorCode ierr;
350df311e6cSXuan Zhou   Mat            Ce;
351ce94432eSBarry Smith   MPI_Comm       comm;
352df311e6cSXuan Zhou 
353df311e6cSXuan Zhou   PetscFunctionBegin;
354ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
355df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
356df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
357df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
358df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
359df311e6cSXuan Zhou   *C = Ce;
360df311e6cSXuan Zhou   PetscFunctionReturn(0);
361df311e6cSXuan Zhou }
362df311e6cSXuan Zhou 
363df311e6cSXuan Zhou #undef __FUNCT__
364df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
365df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
366df311e6cSXuan Zhou {
367df311e6cSXuan Zhou   PetscErrorCode ierr;
368df311e6cSXuan Zhou 
369df311e6cSXuan Zhou   PetscFunctionBegin;
370df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
371df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
372df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
373df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
374df311e6cSXuan Zhou   }
375df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
376df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
377df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
378df311e6cSXuan Zhou   PetscFunctionReturn(0);
379df311e6cSXuan Zhou }
380df311e6cSXuan Zhou 
381df311e6cSXuan Zhou #undef __FUNCT__
38261119200SXuan Zhou #define __FUNCT__ "MatGetDiagonal_Elemental"
383a9d89745SXuan Zhou static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D)
38461119200SXuan Zhou {
385a9d89745SXuan Zhou   PetscInt        i,nrows,ncols,nD,rrank,ridx,crank,cidx;
386a9d89745SXuan Zhou   Mat_Elemental   *a = (Mat_Elemental*)A->data;
38761119200SXuan Zhou   PetscErrorCode  ierr;
388a9d89745SXuan Zhou   PetscElemScalar v;
389ce94432eSBarry Smith   MPI_Comm        comm;
39061119200SXuan Zhou 
39161119200SXuan Zhou   PetscFunctionBegin;
392ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
393a9d89745SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
394a9d89745SXuan Zhou   nD = nrows>ncols ? ncols : nrows;
395a9d89745SXuan Zhou   for (i=0; i<nD; i++) {
396a9d89745SXuan Zhou     PetscInt erow,ecol;
397a9d89745SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
398a9d89745SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
399a9d89745SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
400a9d89745SXuan Zhou     P2RO(A,1,i,&crank,&cidx);
401a9d89745SXuan Zhou     RO2E(A,1,crank,cidx,&ecol);
402a9d89745SXuan Zhou     if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
403a9d89745SXuan Zhou     v = a->emat->Get(erow,ecol);
4047c8b904fSSatish Balay     ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr);
405ade3cc5eSXuan Zhou   }
406a9d89745SXuan Zhou   ierr = VecAssemblyBegin(D);CHKERRQ(ierr);
407a9d89745SXuan Zhou   ierr = VecAssemblyEnd(D);CHKERRQ(ierr);
40861119200SXuan Zhou   PetscFunctionReturn(0);
40961119200SXuan Zhou }
41061119200SXuan Zhou 
41161119200SXuan Zhou #undef __FUNCT__
412ade3cc5eSXuan Zhou #define __FUNCT__ "MatDiagonalScale_Elemental"
413ade3cc5eSXuan Zhou static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R)
414ade3cc5eSXuan Zhou {
415ade3cc5eSXuan Zhou   Mat_Elemental         *x = (Mat_Elemental*)X->data;
416ade3cc5eSXuan Zhou   const PetscElemScalar *d;
417ade3cc5eSXuan Zhou   PetscErrorCode        ierr;
418ade3cc5eSXuan Zhou 
419ade3cc5eSXuan Zhou   PetscFunctionBegin;
4200298fd71SBarry Smith   if (L == NULL) {
421ade3cc5eSXuan Zhou     ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
422ade3cc5eSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->cmap->N,1,0,d,X->cmap->n,*x->grid);
423ade3cc5eSXuan Zhou     elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat);
424ade3cc5eSXuan Zhou     ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
425ade3cc5eSXuan Zhou   } else {
426ade3cc5eSXuan Zhou     ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
427ade3cc5eSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->rmap->N,1,0,d,X->rmap->n,*x->grid);
428ade3cc5eSXuan Zhou     elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat);
429ade3cc5eSXuan Zhou     ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
430ade3cc5eSXuan Zhou   }
431ade3cc5eSXuan Zhou   PetscFunctionReturn(0);
432ade3cc5eSXuan Zhou }
433ade3cc5eSXuan Zhou 
434ade3cc5eSXuan Zhou #undef __FUNCT__
4354ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
436e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
43765b78793SXuan Zhou {
43865b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
43965b78793SXuan Zhou 
44065b78793SXuan Zhou   PetscFunctionBegin;
441e6dea9dbSXuan Zhou   elem::Scal((PetscElemScalar)a,*x->emat);
44265b78793SXuan Zhou   PetscFunctionReturn(0);
44365b78793SXuan Zhou }
44465b78793SXuan Zhou 
44565b78793SXuan Zhou #undef __FUNCT__
4464ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
447e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
448e09a3074SHong Zhang {
449e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
450e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
451e09a3074SHong Zhang 
452e09a3074SHong Zhang   PetscFunctionBegin;
453e6dea9dbSXuan Zhou   elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
454e09a3074SHong Zhang   PetscFunctionReturn(0);
455e09a3074SHong Zhang }
456e09a3074SHong Zhang 
457ae844d54SHong Zhang #undef __FUNCT__
458d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
459d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
460d6223691SXuan Zhou {
461d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
462d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
463d6223691SXuan Zhou 
464d6223691SXuan Zhou   PetscFunctionBegin;
465d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
466d6223691SXuan Zhou   PetscFunctionReturn(0);
467d6223691SXuan Zhou }
468d6223691SXuan Zhou 
469d6223691SXuan Zhou #undef __FUNCT__
470df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
471df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
472df311e6cSXuan Zhou {
473df311e6cSXuan Zhou   Mat            Be;
474ce94432eSBarry Smith   MPI_Comm       comm;
475df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
476df311e6cSXuan Zhou   PetscErrorCode ierr;
477df311e6cSXuan Zhou 
478df311e6cSXuan Zhou   PetscFunctionBegin;
479ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
480df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
481df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
482df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
483df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
484df311e6cSXuan Zhou   *B = Be;
485df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
486df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
487df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
488df311e6cSXuan Zhou   }
489df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
490df311e6cSXuan Zhou   PetscFunctionReturn(0);
491df311e6cSXuan Zhou }
492df311e6cSXuan Zhou 
493df311e6cSXuan Zhou #undef __FUNCT__
494d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
495d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
496d6223691SXuan Zhou {
4975262d616SXuan Zhou   Mat            Be;
4985262d616SXuan Zhou   PetscErrorCode ierr;
499ce94432eSBarry Smith   MPI_Comm       comm;
5004fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
501d6223691SXuan Zhou 
502d6223691SXuan Zhou   PetscFunctionBegin;
503ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
5045cb544a0SHong Zhang   /* Only out-of-place supported */
5055262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
5065262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
5075262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
5085262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
5095262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
5105262d616SXuan Zhou     *B = Be;
5115262d616SXuan Zhou   }
5124fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
5135262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
5145262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
515d6223691SXuan Zhou   PetscFunctionReturn(0);
516d6223691SXuan Zhou }
517d6223691SXuan Zhou 
518d6223691SXuan Zhou #undef __FUNCT__
519dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental"
520dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A)
521dfcb0403SXuan Zhou {
522dfcb0403SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
523dfcb0403SXuan Zhou 
524dfcb0403SXuan Zhou   PetscFunctionBegin;
525dfcb0403SXuan Zhou   elem::Conjugate(*a->emat);
526dfcb0403SXuan Zhou   PetscFunctionReturn(0);
527dfcb0403SXuan Zhou }
528dfcb0403SXuan Zhou 
529dfcb0403SXuan Zhou #undef __FUNCT__
5304a29722dSXuan Zhou #define __FUNCT__ "MatHermitianTranspose_Elemental"
5314a29722dSXuan Zhou static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
5324a29722dSXuan Zhou {
5334a29722dSXuan Zhou   Mat            Be;
5344a29722dSXuan Zhou   PetscErrorCode ierr;
535ce94432eSBarry Smith   MPI_Comm       comm;
5364a29722dSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
5374a29722dSXuan Zhou 
5384a29722dSXuan Zhou   PetscFunctionBegin;
539ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
5405cb544a0SHong Zhang   /* Only out-of-place supported */
5414a29722dSXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
5424a29722dSXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
5434a29722dSXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
5444a29722dSXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
5454a29722dSXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
5464a29722dSXuan Zhou     *B = Be;
5474a29722dSXuan Zhou   }
5484a29722dSXuan Zhou   b = (Mat_Elemental*)Be->data;
5494a29722dSXuan Zhou   elem::Adjoint(*a->emat,*b->emat);
5504a29722dSXuan Zhou   Be->assembled = PETSC_TRUE;
5514a29722dSXuan Zhou   PetscFunctionReturn(0);
5524a29722dSXuan Zhou }
5534a29722dSXuan Zhou 
5544a29722dSXuan Zhou #undef __FUNCT__
5551f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
5561f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
5571f881ff8SXuan Zhou {
5581f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
5591f881ff8SXuan Zhou   PetscErrorCode    ierr;
560df311e6cSXuan Zhou   PetscElemScalar   *x;
5611f881ff8SXuan Zhou 
5621f881ff8SXuan Zhou   PetscFunctionBegin;
56345cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
564e6dea9dbSXuan Zhou   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
565df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
566df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
567fc54b460SXuan Zhou   switch (A->factortype) {
568fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5691f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5704b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
57145cf121fSXuan Zhou       elem::Copy(xer,xe);
572fc54b460SXuan Zhou     } else {
5734b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
57445cf121fSXuan Zhou       elem::Copy(xer,xe);
5751f881ff8SXuan Zhou     }
576fc54b460SXuan Zhou     break;
577fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
578fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
579fc54b460SXuan Zhou     elem::Copy(xer,xe);
580fc54b460SXuan Zhou     break;
581fc54b460SXuan Zhou   default:
5824fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
583fc54b460SXuan Zhou     break;
5841f881ff8SXuan Zhou   }
585e6dea9dbSXuan Zhou   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
5861f881ff8SXuan Zhou   PetscFunctionReturn(0);
5871f881ff8SXuan Zhou }
5881f881ff8SXuan Zhou 
5891f881ff8SXuan Zhou #undef __FUNCT__
590df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
591df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
592df311e6cSXuan Zhou {
593df311e6cSXuan Zhou   PetscErrorCode    ierr;
594df311e6cSXuan Zhou 
595df311e6cSXuan Zhou   PetscFunctionBegin;
596df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5973d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
598df311e6cSXuan Zhou   PetscFunctionReturn(0);
599df311e6cSXuan Zhou }
600df311e6cSXuan Zhou 
601df311e6cSXuan Zhou #undef __FUNCT__
602ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
603ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
604ae844d54SHong Zhang {
6051f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
606d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
6071f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
6081f0e42cfSHong Zhang 
609ae844d54SHong Zhang   PetscFunctionBegin;
610d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
611fc54b460SXuan Zhou   switch (A->factortype) {
612fc54b460SXuan Zhou   case MAT_FACTOR_LU:
613d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
6144b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
615fc54b460SXuan Zhou     } else {
6164b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
617d6223691SXuan Zhou     }
618fc54b460SXuan Zhou     break;
619fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
620fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
621fc54b460SXuan Zhou     break;
622fc54b460SXuan Zhou   default:
6234fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
624fc54b460SXuan Zhou     break;
625fc54b460SXuan Zhou   }
626ae844d54SHong Zhang   PetscFunctionReturn(0);
627ae844d54SHong Zhang }
628ae844d54SHong Zhang 
629ae844d54SHong Zhang #undef __FUNCT__
630ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
631ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
632ae844d54SHong Zhang {
6337c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
6347c920d81SXuan Zhou 
635ae844d54SHong Zhang   PetscFunctionBegin;
636d6223691SXuan Zhou   if (info->dtcol){
6377c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
6381293973dSHong Zhang   } else {
639d6223691SXuan Zhou     elem::LU(*a->emat);
640d6223691SXuan Zhou   }
6411293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
642834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
643ae844d54SHong Zhang   PetscFunctionReturn(0);
644ae844d54SHong Zhang }
645ae844d54SHong Zhang 
646d7c3f9d8SHong Zhang #undef __FUNCT__
647d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
648d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
649d7c3f9d8SHong Zhang {
650d7c3f9d8SHong Zhang   PetscErrorCode ierr;
651d7c3f9d8SHong Zhang 
652d7c3f9d8SHong Zhang   PetscFunctionBegin;
653d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
654d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
655d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
656d7c3f9d8SHong Zhang }
657d7c3f9d8SHong Zhang 
658d7c3f9d8SHong Zhang #undef __FUNCT__
659d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
660d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
661d7c3f9d8SHong Zhang {
662d7c3f9d8SHong Zhang   PetscFunctionBegin;
663d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
664d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
665d7c3f9d8SHong Zhang }
666d7c3f9d8SHong Zhang 
66745cf121fSXuan Zhou #undef __FUNCT__
66845cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
66945cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
67045cf121fSXuan Zhou {
67145cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
672df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
67345cf121fSXuan Zhou 
67445cf121fSXuan Zhou   PetscFunctionBegin;
675c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
676fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
677834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
67845cf121fSXuan Zhou   PetscFunctionReturn(0);
67945cf121fSXuan Zhou }
68045cf121fSXuan Zhou 
68179673f7bSHong Zhang #undef __FUNCT__
68279673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
68379673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
68479673f7bSHong Zhang {
685cb76c1d8SXuan Zhou   PetscErrorCode ierr;
686cb76c1d8SXuan Zhou 
687cb76c1d8SXuan Zhou   PetscFunctionBegin;
688cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
689cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
690cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
69179673f7bSHong Zhang }
692cb76c1d8SXuan Zhou 
69379673f7bSHong Zhang #undef __FUNCT__
69479673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
69579673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
69679673f7bSHong Zhang {
69779673f7bSHong Zhang   PetscFunctionBegin;
69879673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
69979673f7bSHong Zhang   PetscFunctionReturn(0);
70079673f7bSHong Zhang }
70179673f7bSHong Zhang 
7021293973dSHong Zhang #undef __FUNCT__
70315767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
70415767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
70515767789SHong Zhang {
70615767789SHong Zhang   PetscFunctionBegin;
70715767789SHong Zhang   *type = MATSOLVERELEMENTAL;
70815767789SHong Zhang   PetscFunctionReturn(0);
70915767789SHong Zhang }
71015767789SHong Zhang 
71115767789SHong Zhang #undef __FUNCT__
71215767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
71315767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
7141293973dSHong Zhang {
7151293973dSHong Zhang   Mat            B;
7161293973dSHong Zhang   PetscErrorCode ierr;
7171293973dSHong Zhang 
7181293973dSHong Zhang   PetscFunctionBegin;
7191293973dSHong Zhang   /* Create the factorization matrix */
720ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
7211293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7221293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
7231293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
7241293973dSHong Zhang   B->factortype = ftype;
72500de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
7261293973dSHong Zhang   *F            = B;
7271293973dSHong Zhang   PetscFunctionReturn(0);
7281293973dSHong Zhang }
7291293973dSHong Zhang 
7301f881ff8SXuan Zhou #undef __FUNCT__
7311f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
7321f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
7331f881ff8SXuan Zhou {
7341f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7351f881ff8SXuan Zhou 
7361f881ff8SXuan Zhou   PetscFunctionBegin;
7371f881ff8SXuan Zhou   switch (type){
7381f881ff8SXuan Zhou   case NORM_1:
7391f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
7401f881ff8SXuan Zhou     break;
7411f881ff8SXuan Zhou   case NORM_FROBENIUS:
7421f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
7431f881ff8SXuan Zhou     break;
7441f881ff8SXuan Zhou   case NORM_INFINITY:
7451f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
7461f881ff8SXuan Zhou     break;
7471f881ff8SXuan Zhou   default:
7481f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
7491f881ff8SXuan Zhou   }
7501f881ff8SXuan Zhou   PetscFunctionReturn(0);
7511f881ff8SXuan Zhou }
7521f881ff8SXuan Zhou 
7535262d616SXuan Zhou #undef __FUNCT__
7545262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
7555262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
7565262d616SXuan Zhou {
7575262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
7585262d616SXuan Zhou 
7595262d616SXuan Zhou   PetscFunctionBegin;
7605262d616SXuan Zhou   elem::Zero(*a->emat);
7615262d616SXuan Zhou   PetscFunctionReturn(0);
7625262d616SXuan Zhou }
7635262d616SXuan Zhou 
764e09a3074SHong Zhang #undef __FUNCT__
765db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
766db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
767db31f6deSJed Brown {
768db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
769db31f6deSJed Brown   PetscErrorCode ierr;
770db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
771db31f6deSJed Brown 
772db31f6deSJed Brown   PetscFunctionBegin;
773db31f6deSJed Brown   if (rows) {
774db31f6deSJed Brown     m = a->emat->LocalHeight();
775db31f6deSJed Brown     shift = a->emat->ColShift();
776db31f6deSJed Brown     stride = a->emat->ColStride();
777db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
778db31f6deSJed Brown     for (i=0; i<m; i++) {
779db31f6deSJed Brown       PetscInt rank,offset;
780db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
781db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
782db31f6deSJed Brown     }
783db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
784db31f6deSJed Brown   }
785db31f6deSJed Brown   if (cols) {
786db31f6deSJed Brown     m = a->emat->LocalWidth();
787db31f6deSJed Brown     shift = a->emat->RowShift();
788db31f6deSJed Brown     stride = a->emat->RowStride();
789db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
790db31f6deSJed Brown     for (i=0; i<m; i++) {
791db31f6deSJed Brown       PetscInt rank,offset;
792db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
793db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
794db31f6deSJed Brown     }
795db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
796db31f6deSJed Brown   }
797db31f6deSJed Brown   PetscFunctionReturn(0);
798db31f6deSJed Brown }
799db31f6deSJed Brown 
800db31f6deSJed Brown #undef __FUNCT__
8012ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
80219fd82e9SBarry Smith static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B)
803af295397SXuan Zhou {
8042ef0cf24SXuan Zhou   Mat                Bmpi;
805af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
806ce94432eSBarry Smith   MPI_Comm           comm;
8072ef0cf24SXuan Zhou   PetscErrorCode     ierr;
8082ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
809df311e6cSXuan Zhou   PetscElemScalar    v;
810573b0fb4SBarry Smith   PetscBool          s1,s2,s3;
811af295397SXuan Zhou 
812af295397SXuan Zhou   PetscFunctionBegin;
813ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
814573b0fb4SBarry Smith   ierr = PetscStrcmp(newtype,MATDENSE,&s1);CHKERRQ(ierr);
815573b0fb4SBarry Smith   ierr = PetscStrcmp(newtype,MATSEQDENSE,&s2);CHKERRQ(ierr);
816573b0fb4SBarry Smith   ierr = PetscStrcmp(newtype,MATMPIDENSE,&s3);CHKERRQ(ierr);
817573b0fb4SBarry Smith   if (!s1 && !s2 && !s3) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
818af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
819af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
8202ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
821af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
8222ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
8232ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
8242ef0cf24SXuan Zhou     PetscInt erow,ecol;
8252ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
8262ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
8272ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
8282ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
8292ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
8302ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
8312ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
8322ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
833e6dea9dbSXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
8342ef0cf24SXuan Zhou     }
8352ef0cf24SXuan Zhou   }
836af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
837af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
838c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
839c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
840c4ad791aSXuan Zhou   } else {
841c4ad791aSXuan Zhou     *B = Bmpi;
842c4ad791aSXuan Zhou   }
843af295397SXuan Zhou   PetscFunctionReturn(0);
844af295397SXuan Zhou }
845af295397SXuan Zhou 
846af295397SXuan Zhou #undef __FUNCT__
847db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
848db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
849db31f6deSJed Brown {
850db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
851db31f6deSJed Brown   PetscErrorCode     ierr;
8525e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
8535e9f5b67SHong Zhang   PetscBool          flg;
8545e9f5b67SHong Zhang   MPI_Comm           icomm;
855db31f6deSJed Brown 
856db31f6deSJed Brown   PetscFunctionBegin;
857c1ee1e62SHong Zhang   a->interface->Detach();
858aae2c449SHong Zhang   delete a->interface;
859aae2c449SHong Zhang   delete a->esubmat;
860db31f6deSJed Brown   delete a->emat;
8615e9f5b67SHong Zhang 
862ce94432eSBarry Smith   elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A));
8630298fd71SBarry Smith   ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr);
8645e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8655e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8665e9f5b67SHong Zhang     delete commgrid->grid;
8675e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8685e9f5b67SHong Zhang   }
8695e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
87000de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C","",NULL);CHKERRQ(ierr);
87100de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetFactor_petsc_C","",NULL);CHKERRQ(ierr);
87200de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C","",NULL);CHKERRQ(ierr);
873db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
874db31f6deSJed Brown   PetscFunctionReturn(0);
875db31f6deSJed Brown }
876db31f6deSJed Brown 
877db31f6deSJed Brown #undef __FUNCT__
878db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
879db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
880db31f6deSJed Brown {
881db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
882db31f6deSJed Brown   PetscErrorCode ierr;
883db31f6deSJed Brown   PetscMPIInt    rsize,csize;
884db31f6deSJed Brown 
885db31f6deSJed Brown   PetscFunctionBegin;
886db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
887db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
888db31f6deSJed Brown 
889db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
890db31f6deSJed Brown   elem::Zero(*a->emat);
891db31f6deSJed Brown 
892db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
893db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
894ce94432eSBarry Smith   if (csize != rsize) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
895db31f6deSJed Brown   a->commsize = rsize;
896db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
897db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
898db31f6deSJed Brown   a->m[0]  = A->rmap->N / rsize + (a->mr[0] != rsize);
899db31f6deSJed Brown   a->m[1]  = A->cmap->N / csize + (a->mr[1] != csize);
900db31f6deSJed Brown   PetscFunctionReturn(0);
901db31f6deSJed Brown }
902db31f6deSJed Brown 
903aae2c449SHong Zhang #undef __FUNCT__
904aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
905aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
906aae2c449SHong Zhang {
907aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
908aae2c449SHong Zhang 
909aae2c449SHong Zhang   PetscFunctionBegin;
910aae2c449SHong Zhang   a->interface->Detach();
911aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
912aae2c449SHong Zhang   PetscFunctionReturn(0);
913aae2c449SHong Zhang }
914aae2c449SHong Zhang 
915aae2c449SHong Zhang #undef __FUNCT__
916aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
917aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
918aae2c449SHong Zhang {
919aae2c449SHong Zhang   PetscFunctionBegin;
920aae2c449SHong Zhang   /* Currently does nothing */
921aae2c449SHong Zhang   PetscFunctionReturn(0);
922aae2c449SHong Zhang }
923aae2c449SHong Zhang 
92440d92e34SHong Zhang /* -------------------------------------------------------------------*/
92540d92e34SHong Zhang static struct _MatOps MatOps_Values = {
92640d92e34SHong Zhang        MatSetValues_Elemental,
92740d92e34SHong Zhang        0,
92840d92e34SHong Zhang        0,
92940d92e34SHong Zhang        MatMult_Elemental,
93040d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
9319426833fSXuan Zhou        MatMultTranspose_Elemental,
932e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
93340d92e34SHong Zhang        MatSolve_Elemental,
934df311e6cSXuan Zhou        MatSolveAdd_Elemental,
93540d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
93640d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
93740d92e34SHong Zhang        MatLUFactor_Elemental,
93840d92e34SHong Zhang        MatCholeskyFactor_Elemental,
93940d92e34SHong Zhang        0,
94040d92e34SHong Zhang        MatTranspose_Elemental,
94140d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
94240d92e34SHong Zhang        0,
94361119200SXuan Zhou        MatGetDiagonal_Elemental,
944ade3cc5eSXuan Zhou        MatDiagonalScale_Elemental,
94540d92e34SHong Zhang        MatNorm_Elemental,
94640d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
94740d92e34SHong Zhang        MatAssemblyEnd_Elemental,
94840d92e34SHong Zhang        0, //MatSetOption_Elemental,
94940d92e34SHong Zhang        MatZeroEntries_Elemental,
95040d92e34SHong Zhang /*24*/ 0,
95140d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
95240d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
95340d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
95440d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
95540d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
95640d92e34SHong Zhang        0,
95740d92e34SHong Zhang        0,
95840d92e34SHong Zhang        0,
95940d92e34SHong Zhang        0,
960df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
96140d92e34SHong Zhang        0,
96240d92e34SHong Zhang        0,
96340d92e34SHong Zhang        0,
96440d92e34SHong Zhang        0,
96540d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
96640d92e34SHong Zhang        0,
96740d92e34SHong Zhang        0,
96840d92e34SHong Zhang        0,
96940d92e34SHong Zhang        MatCopy_Elemental,
97040d92e34SHong Zhang /*44*/ 0,
97140d92e34SHong Zhang        MatScale_Elemental,
97240d92e34SHong Zhang        0,
97340d92e34SHong Zhang        0,
97440d92e34SHong Zhang        0,
97540d92e34SHong Zhang /*49*/ 0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang        0,
97840d92e34SHong Zhang        0,
97940d92e34SHong Zhang        0,
98040d92e34SHong Zhang /*54*/ 0,
98140d92e34SHong Zhang        0,
98240d92e34SHong Zhang        0,
98340d92e34SHong Zhang        0,
98440d92e34SHong Zhang        0,
98540d92e34SHong Zhang /*59*/ 0,
98640d92e34SHong Zhang        MatDestroy_Elemental,
98740d92e34SHong Zhang        MatView_Elemental,
98840d92e34SHong Zhang        0,
98940d92e34SHong Zhang        0,
99040d92e34SHong Zhang /*64*/ 0,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang        0,
99340d92e34SHong Zhang        0,
99440d92e34SHong Zhang        0,
99540d92e34SHong Zhang /*69*/ 0,
99640d92e34SHong Zhang        0,
9972ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
99840d92e34SHong Zhang        0,
99940d92e34SHong Zhang        0,
100040d92e34SHong Zhang /*74*/ 0,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang        0,
100340d92e34SHong Zhang        0,
100440d92e34SHong Zhang        0,
100540d92e34SHong Zhang /*79*/ 0,
100640d92e34SHong Zhang        0,
100740d92e34SHong Zhang        0,
100840d92e34SHong Zhang        0,
100940d92e34SHong Zhang        0,
101040d92e34SHong Zhang /*84*/ 0,
101140d92e34SHong Zhang        0,
101240d92e34SHong Zhang        0,
101340d92e34SHong Zhang        0,
101440d92e34SHong Zhang        0,
101540d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
101640d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
101740d92e34SHong Zhang        MatMatMultNumeric_Elemental,
101840d92e34SHong Zhang        0,
101940d92e34SHong Zhang        0,
102040d92e34SHong Zhang /*94*/ 0,
1021df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
1022df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
1023df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
102440d92e34SHong Zhang        0,
102540d92e34SHong Zhang /*99*/ 0,
102640d92e34SHong Zhang        0,
102740d92e34SHong Zhang        0,
1028dfcb0403SXuan Zhou        MatConjugate_Elemental,
102940d92e34SHong Zhang        0,
103040d92e34SHong Zhang /*104*/0,
103140d92e34SHong Zhang        0,
103240d92e34SHong Zhang        0,
103340d92e34SHong Zhang        0,
103440d92e34SHong Zhang        0,
103540d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
103640d92e34SHong Zhang        0,
103740d92e34SHong Zhang        0,
103840d92e34SHong Zhang        0,
103940d92e34SHong Zhang        0,
104040d92e34SHong Zhang /*114*/0,
104140d92e34SHong Zhang        0,
104240d92e34SHong Zhang        0,
104340d92e34SHong Zhang        0,
104440d92e34SHong Zhang        0,
104540d92e34SHong Zhang /*119*/0,
10464a29722dSXuan Zhou        MatHermitianTranspose_Elemental,
104740d92e34SHong Zhang        0,
104840d92e34SHong Zhang        0,
104940d92e34SHong Zhang        0,
105040d92e34SHong Zhang /*124*/0,
105140d92e34SHong Zhang        0,
105240d92e34SHong Zhang        0,
105340d92e34SHong Zhang        0,
105440d92e34SHong Zhang        0,
105540d92e34SHong Zhang /*129*/0,
105640d92e34SHong Zhang        0,
105740d92e34SHong Zhang        0,
105840d92e34SHong Zhang        0,
105940d92e34SHong Zhang        0,
106040d92e34SHong Zhang /*134*/0,
106140d92e34SHong Zhang        0,
106240d92e34SHong Zhang        0,
106340d92e34SHong Zhang        0,
106440d92e34SHong Zhang        0
106540d92e34SHong Zhang };
106640d92e34SHong Zhang 
1067ed36708cSHong Zhang /*MC
1068ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1069ed36708cSHong Zhang 
1070ed36708cSHong Zhang    Options Database Keys:
1071ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
10725cb544a0SHong Zhang . -mat_elemental_grid_height - sets Grid Height
10735cb544a0SHong Zhang . -mat_elemental_grid_width - sets Grid Width
1074ed36708cSHong Zhang 
1075ed36708cSHong Zhang   Level: beginner
1076ed36708cSHong Zhang 
10775cb544a0SHong Zhang .seealso: MATDENSE
1078ed36708cSHong Zhang M*/
10794a29722dSXuan Zhou 
1080db31f6deSJed Brown #undef __FUNCT__
1081db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1082*8cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A)
1083db31f6deSJed Brown {
1084db31f6deSJed Brown   Mat_Elemental      *a;
1085db31f6deSJed Brown   PetscErrorCode     ierr;
1086ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10875e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10885e9f5b67SHong Zhang   MPI_Comm           icomm;
1089ed667823SXuan Zhou   PetscInt           optv1,optv2;
1090db31f6deSJed Brown 
1091db31f6deSJed Brown   PetscFunctionBegin;
10920298fd71SBarry Smith   ierr = PetscElementalInitializePackage(NULL);CHKERRQ(ierr);
109340d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
109440d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1095db31f6deSJed Brown 
1096db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1097db31f6deSJed Brown   A->data = (void*)a;
1098db31f6deSJed Brown 
1099db31f6deSJed Brown   /* Set up the elemental matrix */
1100ce94432eSBarry Smith   elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A));
11015e9f5b67SHong Zhang 
11025e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
11035e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1104180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
11055e9f5b67SHong Zhang   }
11060298fd71SBarry Smith   ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr);
11075e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
11085e9f5b67SHong Zhang   if (!flg) {
11095e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
11105cb544a0SHong Zhang 
1111ce94432eSBarry Smith     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
11125cb544a0SHong Zhang     /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */
11132ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
11142ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1115ed667823SXuan Zhou     if (flg1 || flg2) {
1116ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
1117ce94432eSBarry Smith         SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1118ed667823SXuan Zhou       }
11192adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */
11202ef0cf24SXuan Zhou     } else {
11212adf0be3SHong Zhang       commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */
1122ed667823SXuan Zhou     }
11235e9f5b67SHong Zhang     commgrid->grid_refct = 1;
11245e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
11255cb544a0SHong Zhang     PetscOptionsEnd();
11265e9f5b67SHong Zhang   } else {
11275e9f5b67SHong Zhang     commgrid->grid_refct++;
11285e9f5b67SHong Zhang   }
11295e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
11305e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1131df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1132df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1133df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
11347c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1135db31f6deSJed Brown 
1136db31f6deSJed Brown   /* build cache for off array entries formed */
1137aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1138bafd5131SHong Zhang 
113900de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
114000de8ff0SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1141db31f6deSJed Brown 
1142db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1143db31f6deSJed Brown   PetscFunctionReturn(0);
1144db31f6deSJed Brown }
11454a29722dSXuan Zhou 
1146