1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2db31f6deSJed Brown 35e9f5b67SHong Zhang /* 45e9f5b67SHong Zhang The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 55e9f5b67SHong Zhang is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 65e9f5b67SHong Zhang */ 75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 85e9f5b67SHong Zhang 9db31f6deSJed Brown #undef __FUNCT__ 10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage" 11db31f6deSJed Brown /*@C 12db31f6deSJed Brown PetscElementalInitializePackage - Initialize Elemental package 13db31f6deSJed Brown 14db31f6deSJed Brown Logically Collective 15db31f6deSJed Brown 16db31f6deSJed Brown Input Arguments: 17db31f6deSJed Brown . path - the dynamic library path or PETSC_NULL 18db31f6deSJed Brown 19db31f6deSJed Brown Level: developer 20db31f6deSJed Brown 21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22db31f6deSJed Brown @*/ 23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path) 24db31f6deSJed Brown { 25db31f6deSJed Brown PetscErrorCode ierr; 26db31f6deSJed Brown 27db31f6deSJed Brown PetscFunctionBegin; 28db31f6deSJed Brown if (elem::Initialized()) PetscFunctionReturn(0); 29db31f6deSJed Brown { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30db31f6deSJed Brown int zero = 0; 31db31f6deSJed Brown char **nothing = 0; 32db31f6deSJed Brown elem::Initialize(zero,nothing); 33db31f6deSJed Brown } 34db31f6deSJed Brown ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35db31f6deSJed Brown PetscFunctionReturn(0); 36db31f6deSJed Brown } 37db31f6deSJed Brown 38db31f6deSJed Brown #undef __FUNCT__ 39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage" 40db31f6deSJed Brown /*@C 41db31f6deSJed Brown PetscElementalFinalizePackage - Finalize Elemental package 42db31f6deSJed Brown 43db31f6deSJed Brown Logically Collective 44db31f6deSJed Brown 45db31f6deSJed Brown Level: developer 46db31f6deSJed Brown 47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48db31f6deSJed Brown @*/ 49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void) 50db31f6deSJed Brown { 51db31f6deSJed Brown 52db31f6deSJed Brown PetscFunctionBegin; 53db31f6deSJed Brown elem::Finalize(); 54db31f6deSJed Brown PetscFunctionReturn(0); 55db31f6deSJed Brown } 56db31f6deSJed Brown 57db31f6deSJed Brown #undef __FUNCT__ 58db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental" 59db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60db31f6deSJed Brown { 61db31f6deSJed Brown PetscErrorCode ierr; 62db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 63db31f6deSJed Brown PetscBool iascii; 64db31f6deSJed Brown 65db31f6deSJed Brown PetscFunctionBegin; 66db31f6deSJed Brown ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67db31f6deSJed Brown if (iascii) { 68db31f6deSJed Brown PetscViewerFormat format; 69db31f6deSJed Brown ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70db31f6deSJed Brown if (format == PETSC_VIEWER_ASCII_INFO) { 71db31f6deSJed Brown SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Info viewer not implemented yet"); 72db31f6deSJed Brown } else if (format == PETSC_VIEWER_DEFAULT) { 73db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 74db31f6deSJed Brown ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 75db31f6deSJed Brown a->emat->Print("Elemental matrix (cyclic ordering)"); 76db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 77db31f6deSJed Brown } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 78db31f6deSJed Brown } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by Elemental matrices",((PetscObject)viewer)->type_name); 79db31f6deSJed Brown PetscFunctionReturn(0); 80db31f6deSJed Brown } 81db31f6deSJed Brown 82db31f6deSJed Brown #undef __FUNCT__ 83db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental" 84db31f6deSJed Brown static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 85db31f6deSJed Brown { 86db31f6deSJed Brown PetscErrorCode ierr; 87db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 88db31f6deSJed Brown PetscMPIInt rank; 89db31f6deSJed Brown PetscInt i,j,rrank,ridx,crank,cidx; 90db31f6deSJed Brown 91db31f6deSJed Brown PetscFunctionBegin; 92db31f6deSJed Brown ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 93db31f6deSJed Brown 94db31f6deSJed Brown const elem::Grid &grid = a->emat->Grid(); 95db31f6deSJed Brown for (i=0; i<nr; i++) { 96db31f6deSJed Brown PetscInt erow,ecol,elrow,elcol; 97db31f6deSJed Brown if (rows[i] < 0) continue; 98db31f6deSJed Brown P2RO(A,0,rows[i],&rrank,&ridx); 99db31f6deSJed Brown RO2E(A,0,rrank,ridx,&erow); 100db31f6deSJed Brown if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 101db31f6deSJed Brown for (j=0; j<nc; j++) { 102db31f6deSJed Brown if (cols[j] < 0) continue; 103db31f6deSJed Brown P2RO(A,1,cols[j],&crank,&cidx); 104db31f6deSJed Brown RO2E(A,1,crank,cidx,&ecol); 105db31f6deSJed Brown if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 106aae2c449SHong Zhang if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 107aae2c449SHong Zhang if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 108aae2c449SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 109aae2c449SHong Zhang a->esubmat->Set(0,0, vals[i*nc+j]); 110aae2c449SHong Zhang a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 111aae2c449SHong Zhang continue; 112ed36708cSHong Zhang } 113db31f6deSJed Brown elrow = erow / grid.MCSize(); 114db31f6deSJed Brown elcol = ecol / grid.MRSize(); 115db31f6deSJed Brown switch (imode) { 116db31f6deSJed Brown case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,vals[i*nc+j]); break; 117db31f6deSJed Brown case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,vals[i*nc+j]); break; 118db31f6deSJed Brown default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 119db31f6deSJed Brown } 120db31f6deSJed Brown } 121db31f6deSJed Brown } 122db31f6deSJed Brown PetscFunctionReturn(0); 123db31f6deSJed Brown } 124db31f6deSJed Brown 125db31f6deSJed Brown #undef __FUNCT__ 126db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental" 127db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 128db31f6deSJed Brown { 129db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 130db31f6deSJed Brown PetscErrorCode ierr; 131db31f6deSJed Brown const PetscScalar *x; 132db31f6deSJed Brown PetscScalar *y; 133db31f6deSJed Brown PetscScalar one = 1,zero = 0; 134db31f6deSJed Brown 135db31f6deSJed Brown PetscFunctionBegin; 136db31f6deSJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 137db31f6deSJed Brown ierr = VecGetArray(Y,&y);CHKERRQ(ierr); 138db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 139db31f6deSJed Brown elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 140db31f6deSJed Brown elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 141db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 142db31f6deSJed Brown } 143db31f6deSJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 144db31f6deSJed Brown ierr = VecRestoreArray(Y,&y);CHKERRQ(ierr); 145db31f6deSJed Brown PetscFunctionReturn(0); 146db31f6deSJed Brown } 147db31f6deSJed Brown 148db31f6deSJed Brown #undef __FUNCT__ 149db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental" 150db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 151db31f6deSJed Brown { 152db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 153db31f6deSJed Brown PetscErrorCode ierr; 154db31f6deSJed Brown const PetscScalar *x; 155db31f6deSJed Brown PetscScalar *z; 156aae2c449SHong Zhang PetscScalar one = 1.0; 157db31f6deSJed Brown 158db31f6deSJed Brown PetscFunctionBegin; 159db31f6deSJed Brown if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 160db31f6deSJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 161db31f6deSJed Brown ierr = VecGetArray(Z,&z);CHKERRQ(ierr); 162db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 163db31f6deSJed Brown elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 164db31f6deSJed Brown elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 165db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 166db31f6deSJed Brown } 167db31f6deSJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 168db31f6deSJed Brown ierr = VecRestoreArray(Z,&z);CHKERRQ(ierr); 169db31f6deSJed Brown PetscFunctionReturn(0); 170db31f6deSJed Brown } 171db31f6deSJed Brown 172db31f6deSJed Brown #undef __FUNCT__ 1739a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental" 1749a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 175c1d1b975SXuan Zhou { 176c1d1b975SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 177c1d1b975SXuan Zhou Mat_Elemental *b = (Mat_Elemental*)B->data; 1789a9e8502SHong Zhang Mat_Elemental *c = (Mat_Elemental*)C->data; 179aae2c449SHong Zhang PetscScalar one = 1.0,zero = 0.0; 180c1d1b975SXuan Zhou 181c1d1b975SXuan Zhou PetscFunctionBegin; 182aae2c449SHong Zhang { /* Scoping so that constructor is called before pointer is returned */ 183c1d1b975SXuan Zhou elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 184aae2c449SHong Zhang } 1859a9e8502SHong Zhang C->assembled = PETSC_TRUE; 1869a9e8502SHong Zhang PetscFunctionReturn(0); 1879a9e8502SHong Zhang } 1889a9e8502SHong Zhang 1899a9e8502SHong Zhang #undef __FUNCT__ 1909a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental" 1919a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 1929a9e8502SHong Zhang { 1939a9e8502SHong Zhang PetscErrorCode ierr; 1949a9e8502SHong Zhang Mat Ce; 1959a9e8502SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 1969a9e8502SHong Zhang 1979a9e8502SHong Zhang PetscFunctionBegin; 1989a9e8502SHong Zhang ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 1999a9e8502SHong Zhang ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 2009a9e8502SHong Zhang ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 2019a9e8502SHong Zhang ierr = MatSetUp(Ce);CHKERRQ(ierr); 2029a9e8502SHong Zhang *C = Ce; 2039a9e8502SHong Zhang PetscFunctionReturn(0); 2049a9e8502SHong Zhang } 2059a9e8502SHong Zhang 2069a9e8502SHong Zhang #undef __FUNCT__ 2079a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental" 2089a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2099a9e8502SHong Zhang { 2109a9e8502SHong Zhang PetscErrorCode ierr; 2119a9e8502SHong Zhang 2129a9e8502SHong Zhang PetscFunctionBegin; 2139a9e8502SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 2149a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2159a9e8502SHong Zhang ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 2169a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2179a9e8502SHong Zhang } 2189a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2199a9e8502SHong Zhang ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 2209a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 221c1d1b975SXuan Zhou PetscFunctionReturn(0); 222c1d1b975SXuan Zhou } 223c1d1b975SXuan Zhou 224c1d1b975SXuan Zhou #undef __FUNCT__ 2254ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental" 2264ee44ac6SXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 22765b78793SXuan Zhou { 22865b78793SXuan Zhou Mat_Elemental *x = (Mat_Elemental*)X->data; 22965b78793SXuan Zhou 23065b78793SXuan Zhou PetscFunctionBegin; 23165b78793SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 2324ee44ac6SXuan Zhou elem::Scal(a,*x->emat); 23365b78793SXuan Zhou } 23465b78793SXuan Zhou PetscFunctionReturn(0); 23565b78793SXuan Zhou } 23665b78793SXuan Zhou 23765b78793SXuan Zhou #undef __FUNCT__ 2384ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental" 2394ee44ac6SXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 240e09a3074SHong Zhang { 241e09a3074SHong Zhang Mat_Elemental *x = (Mat_Elemental*)X->data; 242e09a3074SHong Zhang Mat_Elemental *y = (Mat_Elemental*)Y->data; 243e09a3074SHong Zhang 244e09a3074SHong Zhang PetscFunctionBegin; 2454ee44ac6SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 2464ee44ac6SXuan Zhou elem::Axpy(a,*x->emat,*y->emat); 2474ee44ac6SXuan Zhou } 248e09a3074SHong Zhang PetscFunctionReturn(0); 249e09a3074SHong Zhang } 250e09a3074SHong Zhang 251ae844d54SHong Zhang #undef __FUNCT__ 252d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental" 253d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 254d6223691SXuan Zhou { 255d6223691SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 256d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 257d6223691SXuan Zhou 258d6223691SXuan Zhou PetscFunctionBegin; 259d6223691SXuan Zhou elem::Copy(*a->emat,*b->emat); 260d6223691SXuan Zhou PetscFunctionReturn(0); 261d6223691SXuan Zhou } 262d6223691SXuan Zhou 263d6223691SXuan Zhou #undef __FUNCT__ 264d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental" 265d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 266d6223691SXuan Zhou { 267ad880c91SXuan Zhou /* not implemented yet */ 268d6223691SXuan Zhou 269d6223691SXuan Zhou PetscFunctionBegin; 270d6223691SXuan Zhou PetscFunctionReturn(0); 271d6223691SXuan Zhou } 272d6223691SXuan Zhou 273d6223691SXuan Zhou #undef __FUNCT__ 274ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental" 275ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 276ae844d54SHong Zhang { 2771f0e42cfSHong Zhang Mat_Elemental *a=(Mat_Elemental*)A->data; 278d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 2791f0e42cfSHong Zhang Mat_Elemental *x=(Mat_Elemental*)X->data; 2801f0e42cfSHong Zhang 281ae844d54SHong Zhang PetscFunctionBegin; 282d6223691SXuan Zhou elem::Copy(*b->emat,*x->emat); 283d6223691SXuan Zhou if ((*a->pivot).AllocatedMemory()) { 284d6223691SXuan Zhou printf("pivot is not empty.\n"); 285d6223691SXuan Zhou elem::LUSolve(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 286d6223691SXuan Zhou } 287d6223691SXuan Zhou else { 288d6223691SXuan Zhou printf("pivot is empty.\n"); 2891f0e42cfSHong Zhang elem::LUSolve(elem::NORMAL,*a->emat,*x->emat); 290d6223691SXuan Zhou } 291ae844d54SHong Zhang PetscFunctionReturn(0); 292ae844d54SHong Zhang } 293ae844d54SHong Zhang 294ae844d54SHong Zhang #undef __FUNCT__ 295ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental" 296ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 297ae844d54SHong Zhang { 2987c920d81SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 2997c920d81SXuan Zhou 300ae844d54SHong Zhang PetscFunctionBegin; 301ae844d54SHong Zhang printf("MatLUFactor_Elemental is called...\n"); 302d6223691SXuan Zhou if (info->dtcol){ 303d6223691SXuan Zhou printf("LUFactor w/ pivoting\n"); 3047c920d81SXuan Zhou elem::LU(*a->emat,*a->pivot); 3051293973dSHong Zhang } else { 306d6223691SXuan Zhou printf("LUFactor w/o pivoting\n"); 307d6223691SXuan Zhou elem::LU(*a->emat); 308d6223691SXuan Zhou } 3091293973dSHong Zhang A->factortype = MAT_FACTOR_LU; 310ae844d54SHong Zhang PetscFunctionReturn(0); 311ae844d54SHong Zhang } 312ae844d54SHong Zhang 313*d7c3f9d8SHong Zhang #undef __FUNCT__ 314*d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental" 315*d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 316*d7c3f9d8SHong Zhang { 317*d7c3f9d8SHong Zhang PetscErrorCode ierr; 318*d7c3f9d8SHong Zhang 319*d7c3f9d8SHong Zhang PetscFunctionBegin; 320*d7c3f9d8SHong Zhang printf("MatLUFactorNumeric_Elemental is called...\n"); 321*d7c3f9d8SHong Zhang ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 322*d7c3f9d8SHong Zhang ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 323*d7c3f9d8SHong Zhang PetscFunctionReturn(0); 324*d7c3f9d8SHong Zhang } 325*d7c3f9d8SHong Zhang 326*d7c3f9d8SHong Zhang #undef __FUNCT__ 327*d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 328*d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 329*d7c3f9d8SHong Zhang { 330*d7c3f9d8SHong Zhang PetscFunctionBegin; 331*d7c3f9d8SHong Zhang /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 332*d7c3f9d8SHong Zhang PetscFunctionReturn(0); 333*d7c3f9d8SHong Zhang } 334*d7c3f9d8SHong Zhang 3351293973dSHong Zhang EXTERN_C_BEGIN 3361293973dSHong Zhang #undef __FUNCT__ 3371293973dSHong Zhang #define __FUNCT__ "MatGetFactor_elemental_petsc" 3381293973dSHong Zhang static PetscErrorCode MatGetFactor_elemental_petsc(Mat A,MatFactorType ftype,Mat *F) 3391293973dSHong Zhang { 3401293973dSHong Zhang Mat B; 3411293973dSHong Zhang PetscErrorCode ierr; 3421293973dSHong Zhang 3431293973dSHong Zhang PetscFunctionBegin; 3441293973dSHong Zhang printf("MatGetFactor_elemental_petsc is called...\n"); 3451293973dSHong Zhang /* Create the factorization matrix */ 3461293973dSHong Zhang ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 3471293973dSHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 3481293973dSHong Zhang ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 3491293973dSHong Zhang ierr = MatSetUp(B);CHKERRQ(ierr); 3501293973dSHong Zhang B->factortype = ftype; 3511293973dSHong Zhang *F = B; 3521293973dSHong Zhang PetscFunctionReturn(0); 3531293973dSHong Zhang } 3541293973dSHong Zhang EXTERN_C_END 3551293973dSHong Zhang 3561293973dSHong Zhang EXTERN_C_BEGIN 357e09a3074SHong Zhang #undef __FUNCT__ 358db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental" 359db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 360db31f6deSJed Brown { 361db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 362db31f6deSJed Brown PetscErrorCode ierr; 363db31f6deSJed Brown PetscInt i,m,shift,stride,*idx; 364db31f6deSJed Brown 365db31f6deSJed Brown PetscFunctionBegin; 366db31f6deSJed Brown if (rows) { 367db31f6deSJed Brown m = a->emat->LocalHeight(); 368db31f6deSJed Brown shift = a->emat->ColShift(); 369db31f6deSJed Brown stride = a->emat->ColStride(); 370db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 371db31f6deSJed Brown for (i=0; i<m; i++) { 372db31f6deSJed Brown PetscInt rank,offset; 373db31f6deSJed Brown E2RO(A,0,shift+i*stride,&rank,&offset); 374db31f6deSJed Brown RO2P(A,0,rank,offset,&idx[i]); 375db31f6deSJed Brown } 376db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 377db31f6deSJed Brown } 378db31f6deSJed Brown if (cols) { 379db31f6deSJed Brown m = a->emat->LocalWidth(); 380db31f6deSJed Brown shift = a->emat->RowShift(); 381db31f6deSJed Brown stride = a->emat->RowStride(); 382db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 383db31f6deSJed Brown for (i=0; i<m; i++) { 384db31f6deSJed Brown PetscInt rank,offset; 385db31f6deSJed Brown E2RO(A,1,shift+i*stride,&rank,&offset); 386db31f6deSJed Brown RO2P(A,1,rank,offset,&idx[i]); 387db31f6deSJed Brown } 388db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 389db31f6deSJed Brown } 390db31f6deSJed Brown PetscFunctionReturn(0); 391db31f6deSJed Brown } 3921293973dSHong Zhang EXTERN_C_END 393db31f6deSJed Brown 394db31f6deSJed Brown #undef __FUNCT__ 395db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental" 396db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A) 397db31f6deSJed Brown { 398db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 399db31f6deSJed Brown PetscErrorCode ierr; 4005e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 4015e9f5b67SHong Zhang PetscBool flg; 4025e9f5b67SHong Zhang MPI_Comm icomm; 403db31f6deSJed Brown 404db31f6deSJed Brown PetscFunctionBegin; 405aae2c449SHong Zhang delete a->interface; 406aae2c449SHong Zhang delete a->esubmat; 407db31f6deSJed Brown delete a->emat; 4085e9f5b67SHong Zhang elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 4095e9f5b67SHong Zhang 4105e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 4115e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 4125e9f5b67SHong Zhang if (--commgrid->grid_refct == 0) { 4135e9f5b67SHong Zhang delete commgrid->grid; 4145e9f5b67SHong Zhang ierr = PetscFree(commgrid);CHKERRQ(ierr); 4155e9f5b67SHong Zhang } 4165e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 417db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 4181293973dSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 419db31f6deSJed Brown ierr = PetscFree(A->data);CHKERRQ(ierr); 420db31f6deSJed Brown PetscFunctionReturn(0); 421db31f6deSJed Brown } 422db31f6deSJed Brown 423db31f6deSJed Brown #undef __FUNCT__ 424db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental" 425db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A) 426db31f6deSJed Brown { 427db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 428db31f6deSJed Brown PetscErrorCode ierr; 429db31f6deSJed Brown PetscMPIInt rsize,csize; 430db31f6deSJed Brown 431db31f6deSJed Brown PetscFunctionBegin; 432db31f6deSJed Brown ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 433db31f6deSJed Brown ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 434db31f6deSJed Brown 435db31f6deSJed Brown a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 436db31f6deSJed Brown elem::Zero(*a->emat); 437db31f6deSJed Brown 438db31f6deSJed Brown ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 439db31f6deSJed Brown ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 440db31f6deSJed Brown if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 441db31f6deSJed Brown a->commsize = rsize; 442db31f6deSJed Brown a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 443db31f6deSJed Brown a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 444db31f6deSJed Brown a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 445db31f6deSJed Brown a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 446db31f6deSJed Brown PetscFunctionReturn(0); 447db31f6deSJed Brown } 448db31f6deSJed Brown 449aae2c449SHong Zhang #undef __FUNCT__ 450aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental" 451aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 452aae2c449SHong Zhang { 453aae2c449SHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data; 454aae2c449SHong Zhang 455aae2c449SHong Zhang PetscFunctionBegin; 456aae2c449SHong Zhang a->interface->Detach(); 457aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 458aae2c449SHong Zhang PetscFunctionReturn(0); 459aae2c449SHong Zhang } 460aae2c449SHong Zhang 461aae2c449SHong Zhang #undef __FUNCT__ 462aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental" 463aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 464aae2c449SHong Zhang { 465aae2c449SHong Zhang PetscFunctionBegin; 466aae2c449SHong Zhang /* Currently does nothing */ 467aae2c449SHong Zhang PetscFunctionReturn(0); 468aae2c449SHong Zhang } 469aae2c449SHong Zhang 470ed36708cSHong Zhang /*MC 471ed36708cSHong Zhang MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 472ed36708cSHong Zhang 473ed36708cSHong Zhang Options Database Keys: 474ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 475ed36708cSHong Zhang 476ed36708cSHong Zhang Level: beginner 477ed36708cSHong Zhang 478ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental() 479ed36708cSHong Zhang M*/ 480ed36708cSHong Zhang EXTERN_C_BEGIN 481db31f6deSJed Brown #undef __FUNCT__ 482db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental" 483db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 484db31f6deSJed Brown { 485db31f6deSJed Brown Mat_Elemental *a; 486db31f6deSJed Brown PetscErrorCode ierr; 4875e9f5b67SHong Zhang PetscBool flg; 4885e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 4895e9f5b67SHong Zhang MPI_Comm icomm; 490db31f6deSJed Brown 491db31f6deSJed Brown PetscFunctionBegin; 492db31f6deSJed Brown ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 493db31f6deSJed Brown 494db31f6deSJed Brown ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 495db31f6deSJed Brown A->data = (void*)a; 496db31f6deSJed Brown 497db31f6deSJed Brown A->ops->view = MatView_Elemental; 498db31f6deSJed Brown A->ops->destroy = MatDestroy_Elemental; 499db31f6deSJed Brown A->ops->setup = MatSetUp_Elemental; 500db31f6deSJed Brown A->ops->setvalues = MatSetValues_Elemental; 501db31f6deSJed Brown A->ops->mult = MatMult_Elemental; 502db31f6deSJed Brown A->ops->multadd = MatMultAdd_Elemental; 503c1d1b975SXuan Zhou A->ops->matmult = MatMatMult_Elemental; 5049a9e8502SHong Zhang A->ops->matmultsymbolic = MatMatMultSymbolic_Elemental; 5059a9e8502SHong Zhang A->ops->matmultnumeric = MatMatMultNumeric_Elemental; 506aae2c449SHong Zhang A->ops->assemblybegin = MatAssemblyBegin_Elemental; 507aae2c449SHong Zhang A->ops->assemblyend = MatAssemblyEnd_Elemental; 5084ee44ac6SXuan Zhou A->ops->scale = MatScale_Elemental; 50965b78793SXuan Zhou A->ops->axpy = MatAXPY_Elemental; 510ae844d54SHong Zhang A->ops->lufactor = MatLUFactor_Elemental; 511*d7c3f9d8SHong Zhang A->ops->lufactorsymbolic = MatLUFactorSymbolic_Elemental; 512*d7c3f9d8SHong Zhang A->ops->lufactornumeric = MatLUFactorNumeric_Elemental; 513ae844d54SHong Zhang A->ops->matsolve = MatMatSolve_Elemental; 514d6223691SXuan Zhou A->ops->copy = MatCopy_Elemental; 515d6223691SXuan Zhou A->ops->transpose = MatTranspose_Elemental; 516db31f6deSJed Brown 517db31f6deSJed Brown A->insertmode = NOT_SET_VALUES; 518db31f6deSJed Brown 519db31f6deSJed Brown /* Set up the elemental matrix */ 520db31f6deSJed Brown elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 5215e9f5b67SHong Zhang 5225e9f5b67SHong Zhang /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 5235e9f5b67SHong Zhang if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 524bafd5131SHong Zhang ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); // MPI_Keyval_free()? 5255e9f5b67SHong Zhang } 5265e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 5275e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 5285e9f5b67SHong Zhang if (!flg) { 5295e9f5b67SHong Zhang ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 5305e9f5b67SHong Zhang commgrid->grid = new elem::Grid(cxxcomm); 5315e9f5b67SHong Zhang commgrid->grid_refct = 1; 5325e9f5b67SHong Zhang ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 533bafd5131SHong Zhang printf(" create commgrid ...\n"); 5345e9f5b67SHong Zhang } else { 5355e9f5b67SHong Zhang commgrid->grid_refct++; 536bafd5131SHong Zhang printf(" share commgrid ...\n"); 5375e9f5b67SHong Zhang } 5385e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 5395e9f5b67SHong Zhang a->grid = commgrid->grid; 540db31f6deSJed Brown a->emat = new elem::DistMatrix<PetscScalar>(*a->grid); 541aae2c449SHong Zhang a->esubmat = new elem::Matrix<PetscScalar>(1,1); 542aae2c449SHong Zhang a->interface = new elem::AxpyInterface<PetscScalar>; 5437c920d81SXuan Zhou a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 544db31f6deSJed Brown 545db31f6deSJed Brown /* build cache for off array entries formed */ 546aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 547bafd5131SHong Zhang 548db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 5491293973dSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","MatGetFactor_elemental_petsc",MatGetFactor_elemental_petsc);CHKERRQ(ierr); 550db31f6deSJed Brown 551db31f6deSJed Brown ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 552db31f6deSJed Brown PetscFunctionReturn(0); 553db31f6deSJed Brown } 554ed36708cSHong Zhang EXTERN_C_END 555