xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision dfcb04032717132d1e34e5c6a51d88a2b29734d7)
1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2db31f6deSJed Brown 
35e9f5b67SHong Zhang /*
45e9f5b67SHong Zhang     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
55e9f5b67SHong Zhang   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
65e9f5b67SHong Zhang */
75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
85e9f5b67SHong Zhang 
9db31f6deSJed Brown #undef __FUNCT__
10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage"
11db31f6deSJed Brown /*@C
12db31f6deSJed Brown    PetscElementalInitializePackage - Initialize Elemental package
13db31f6deSJed Brown 
14db31f6deSJed Brown    Logically Collective
15db31f6deSJed Brown 
16db31f6deSJed Brown    Input Arguments:
17db31f6deSJed Brown .  path - the dynamic library path or PETSC_NULL
18db31f6deSJed Brown 
19db31f6deSJed Brown    Level: developer
20db31f6deSJed Brown 
21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
22db31f6deSJed Brown @*/
23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path)
24db31f6deSJed Brown {
25db31f6deSJed Brown   PetscErrorCode ierr;
26db31f6deSJed Brown 
27db31f6deSJed Brown   PetscFunctionBegin;
28db31f6deSJed Brown   if (elem::Initialized()) PetscFunctionReturn(0);
29db31f6deSJed Brown   { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */
30db31f6deSJed Brown     int zero = 0;
31db31f6deSJed Brown     char **nothing = 0;
32db31f6deSJed Brown     elem::Initialize(zero,nothing);
33db31f6deSJed Brown   }
34db31f6deSJed Brown   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
35db31f6deSJed Brown   PetscFunctionReturn(0);
36db31f6deSJed Brown }
37db31f6deSJed Brown 
38db31f6deSJed Brown #undef __FUNCT__
39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage"
40db31f6deSJed Brown /*@C
41db31f6deSJed Brown    PetscElementalFinalizePackage - Finalize Elemental package
42db31f6deSJed Brown 
43db31f6deSJed Brown    Logically Collective
44db31f6deSJed Brown 
45db31f6deSJed Brown    Level: developer
46db31f6deSJed Brown 
47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage()
48db31f6deSJed Brown @*/
49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void)
50db31f6deSJed Brown {
51db31f6deSJed Brown 
52db31f6deSJed Brown   PetscFunctionBegin;
53db31f6deSJed Brown   elem::Finalize();
54db31f6deSJed Brown   PetscFunctionReturn(0);
55db31f6deSJed Brown }
56db31f6deSJed Brown 
57ed667823SXuan Zhou /* Sets Elemental options from the options database */
58ed667823SXuan Zhou #undef __FUNCT__
59ed667823SXuan Zhou #define __FUNCT__ "PetscSetElementalFromOptions"
60ed667823SXuan Zhou PetscErrorCode PetscSetElementalFromOptions(Mat A)
61ed667823SXuan Zhou {
62ed667823SXuan Zhou   PetscErrorCode ierr;
63ed667823SXuan Zhou 
64ed667823SXuan Zhou   PetscFunctionBegin;
65ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
66ed667823SXuan Zhou   PetscOptionsEnd();
67ed667823SXuan Zhou   PetscFunctionReturn(0);
68ed667823SXuan Zhou }
69ed667823SXuan Zhou 
70db31f6deSJed Brown #undef __FUNCT__
71db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental"
72db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
73db31f6deSJed Brown {
74db31f6deSJed Brown   PetscErrorCode ierr;
75db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
76db31f6deSJed Brown   PetscBool      iascii;
77db31f6deSJed Brown 
78db31f6deSJed Brown   PetscFunctionBegin;
79db31f6deSJed Brown   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
80db31f6deSJed Brown   if (iascii) {
81db31f6deSJed Brown     PetscViewerFormat format;
82db31f6deSJed Brown     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
83db31f6deSJed Brown     if (format == PETSC_VIEWER_ASCII_INFO) {
8479673f7bSHong Zhang       /* call elemental viewing function */
852d8adcc7SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
86ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
87ed667823SXuan Zhou       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
884fe7bbcaSHong Zhang       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
8979673f7bSHong Zhang         /* call elemental viewing function */
9080622e0cSXuan Zhou         ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr);
914fe7bbcaSHong Zhang       }
9279673f7bSHong Zhang 
93db31f6deSJed Brown     } else if (format == PETSC_VIEWER_DEFAULT) {
94db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
95db31f6deSJed Brown       ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr);
96db31f6deSJed Brown       a->emat->Print("Elemental matrix (cyclic ordering)");
97db31f6deSJed Brown       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
98834d3fecSHong Zhang       if (A->factortype == MAT_FACTOR_NONE){
99d2daa67eSHong Zhang         Mat Aaij;
1000022473aSHong Zhang         ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
1010022473aSHong Zhang         ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
102d2daa67eSHong Zhang         ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
1030022473aSHong Zhang         ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
104834d3fecSHong Zhang       }
105db31f6deSJed Brown     } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format");
106d2daa67eSHong Zhang   } else {
107d2daa67eSHong Zhang     /* convert to aij/mpidense format and call MatView() */
108d2daa67eSHong Zhang     Mat Aaij;
109d2daa67eSHong Zhang     ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
110d2daa67eSHong Zhang     ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr);
111d2daa67eSHong Zhang     ierr = MatView(Aaij,viewer);CHKERRQ(ierr);
112d2daa67eSHong Zhang     ierr = MatDestroy(&Aaij);CHKERRQ(ierr);
113d2daa67eSHong Zhang   }
114db31f6deSJed Brown   PetscFunctionReturn(0);
115db31f6deSJed Brown }
116db31f6deSJed Brown 
117db31f6deSJed Brown #undef __FUNCT__
118180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental"
11915767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
120180a43e4SHong Zhang {
12115767789SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
12215767789SHong Zhang   PetscMPIInt    rank;
12315767789SHong Zhang 
124180a43e4SHong Zhang   PetscFunctionBegin;
12515767789SHong Zhang   MPI_Comm_rank(((PetscObject)A)->comm,&rank);
12615767789SHong Zhang 
12715767789SHong Zhang   /* if (!rank) printf("          .........MatGetInfo_Elemental ...\n"); */
12815767789SHong Zhang   info->block_size     = 1.0; /* ? */
12915767789SHong Zhang 
13015767789SHong Zhang   if (flag == MAT_LOCAL) {
13115767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
13215767789SHong Zhang     info->nz_used        = info->nz_allocated;
13315767789SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
13415767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13515767789SHong Zhang     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
13615767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
13715767789SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
13815767789SHong Zhang     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
13915767789SHong Zhang     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
14015767789SHong Zhang     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
14115767789SHong Zhang     //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
14215767789SHong Zhang     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
14315767789SHong Zhang   }
14415767789SHong Zhang 
14515767789SHong Zhang   info->nz_unneeded       = 0.0;
14615767789SHong Zhang   info->assemblies        = (double)A->num_ass;
14715767789SHong Zhang   info->mallocs           = 0;
14815767789SHong Zhang   info->memory            = ((PetscObject)A)->mem;
14915767789SHong Zhang   info->fill_ratio_given  = 0; /* determined by Elemental */
15015767789SHong Zhang   info->fill_ratio_needed = 0;
15115767789SHong Zhang   info->factor_mallocs    = 0;
152180a43e4SHong Zhang   PetscFunctionReturn(0);
153180a43e4SHong Zhang }
154180a43e4SHong Zhang 
155180a43e4SHong Zhang #undef __FUNCT__
156db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental"
157e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
158db31f6deSJed Brown {
159db31f6deSJed Brown   PetscErrorCode ierr;
160db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
161db31f6deSJed Brown   PetscMPIInt    rank;
162db31f6deSJed Brown   PetscInt       i,j,rrank,ridx,crank,cidx;
163db31f6deSJed Brown 
164db31f6deSJed Brown   PetscFunctionBegin;
165db31f6deSJed Brown   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
166db31f6deSJed Brown 
167db31f6deSJed Brown   const elem::Grid &grid = a->emat->Grid();
168db31f6deSJed Brown   for (i=0; i<nr; i++) {
169db31f6deSJed Brown     PetscInt erow,ecol,elrow,elcol;
170db31f6deSJed Brown     if (rows[i] < 0) continue;
171db31f6deSJed Brown     P2RO(A,0,rows[i],&rrank,&ridx);
172db31f6deSJed Brown     RO2E(A,0,rrank,ridx,&erow);
173db31f6deSJed Brown     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation");
174db31f6deSJed Brown     for (j=0; j<nc; j++) {
175db31f6deSJed Brown       if (cols[j] < 0) continue;
176db31f6deSJed Brown       P2RO(A,1,cols[j],&crank,&cidx);
177db31f6deSJed Brown       RO2E(A,1,crank,cidx,&ecol);
178db31f6deSJed Brown       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation");
179aae2c449SHong Zhang       if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */
180aae2c449SHong Zhang         if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
181aae2c449SHong Zhang         /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */
182e6dea9dbSXuan Zhou         a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]);
183aae2c449SHong Zhang         a->interface->Axpy(1.0,*(a->esubmat),erow,ecol);
184aae2c449SHong Zhang         continue;
185ed36708cSHong Zhang       }
186db31f6deSJed Brown       elrow = erow / grid.MCSize();
187db31f6deSJed Brown       elcol = ecol / grid.MRSize();
188db31f6deSJed Brown       switch (imode) {
189e6dea9dbSXuan Zhou       case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
190e6dea9dbSXuan Zhou       case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break;
191db31f6deSJed Brown       default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
192db31f6deSJed Brown       }
193db31f6deSJed Brown     }
194db31f6deSJed Brown   }
195db31f6deSJed Brown   PetscFunctionReturn(0);
196db31f6deSJed Brown }
197db31f6deSJed Brown 
198db31f6deSJed Brown #undef __FUNCT__
199db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental"
200db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
201db31f6deSJed Brown {
202db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
203db31f6deSJed Brown   PetscErrorCode        ierr;
204e6dea9dbSXuan Zhou   const PetscElemScalar *x;
205e6dea9dbSXuan Zhou   PetscElemScalar       *y;
206df311e6cSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
207db31f6deSJed Brown 
208db31f6deSJed Brown   PetscFunctionBegin;
209e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
210e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
211db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
212df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
213df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid);
214db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye);
215db31f6deSJed Brown   }
216e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
217e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
218db31f6deSJed Brown   PetscFunctionReturn(0);
219db31f6deSJed Brown }
220db31f6deSJed Brown 
221db31f6deSJed Brown #undef __FUNCT__
2229426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental"
2239426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
2249426833fSXuan Zhou {
2259426833fSXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
2269426833fSXuan Zhou   PetscErrorCode        ierr;
227df311e6cSXuan Zhou   const PetscElemScalar *x;
228df311e6cSXuan Zhou   PetscElemScalar       *y;
229e6dea9dbSXuan Zhou   PetscElemScalar       one = 1,zero = 0;
2309426833fSXuan Zhou 
2319426833fSXuan Zhou   PetscFunctionBegin;
232e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
233e6dea9dbSXuan Zhou   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2349426833fSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
235df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
236df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid);
2379426833fSXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye);
2389426833fSXuan Zhou   }
239e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
240e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
2419426833fSXuan Zhou   PetscFunctionReturn(0);
2429426833fSXuan Zhou }
2439426833fSXuan Zhou 
2449426833fSXuan Zhou #undef __FUNCT__
245db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental"
246db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
247db31f6deSJed Brown {
248db31f6deSJed Brown   Mat_Elemental         *a = (Mat_Elemental*)A->data;
249db31f6deSJed Brown   PetscErrorCode        ierr;
250df311e6cSXuan Zhou   const PetscElemScalar *x;
251df311e6cSXuan Zhou   PetscElemScalar       *z;
252e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
253db31f6deSJed Brown 
254db31f6deSJed Brown   PetscFunctionBegin;
255db31f6deSJed Brown   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
256e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
257e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
258db31f6deSJed Brown   { /* Scoping so that constructor is called before pointer is returned */
259df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid);
260df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid);
261db31f6deSJed Brown     elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze);
262db31f6deSJed Brown   }
263e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
264e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
265db31f6deSJed Brown   PetscFunctionReturn(0);
266db31f6deSJed Brown }
267db31f6deSJed Brown 
268db31f6deSJed Brown #undef __FUNCT__
269e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental"
270e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
271e883f9d5SXuan Zhou {
272e883f9d5SXuan Zhou   Mat_Elemental         *a = (Mat_Elemental*)A->data;
273e883f9d5SXuan Zhou   PetscErrorCode        ierr;
274df311e6cSXuan Zhou   const PetscElemScalar *x;
275df311e6cSXuan Zhou   PetscElemScalar       *z;
276e6dea9dbSXuan Zhou   PetscElemScalar       one = 1;
277e883f9d5SXuan Zhou 
278e883f9d5SXuan Zhou   PetscFunctionBegin;
279e883f9d5SXuan Zhou   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
280e6dea9dbSXuan Zhou   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
281e6dea9dbSXuan Zhou   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
282e883f9d5SXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
283df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
284df311e6cSXuan Zhou     elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid);
285e883f9d5SXuan Zhou     elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze);
286e883f9d5SXuan Zhou   }
287e6dea9dbSXuan Zhou   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
288e6dea9dbSXuan Zhou   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
289e883f9d5SXuan Zhou   PetscFunctionReturn(0);
290e883f9d5SXuan Zhou }
291e883f9d5SXuan Zhou 
292e883f9d5SXuan Zhou #undef __FUNCT__
2939a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental"
2949a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
295c1d1b975SXuan Zhou {
296c1d1b975SXuan Zhou   Mat_Elemental    *a = (Mat_Elemental*)A->data;
297c1d1b975SXuan Zhou   Mat_Elemental    *b = (Mat_Elemental*)B->data;
2989a9e8502SHong Zhang   Mat_Elemental    *c = (Mat_Elemental*)C->data;
299e6dea9dbSXuan Zhou   PetscElemScalar  one = 1,zero = 0;
300c1d1b975SXuan Zhou 
301c1d1b975SXuan Zhou   PetscFunctionBegin;
302aae2c449SHong Zhang   { /* Scoping so that constructor is called before pointer is returned */
303c1d1b975SXuan Zhou     elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
304aae2c449SHong Zhang   }
3059a9e8502SHong Zhang   C->assembled = PETSC_TRUE;
3069a9e8502SHong Zhang   PetscFunctionReturn(0);
3079a9e8502SHong Zhang }
3089a9e8502SHong Zhang 
3099a9e8502SHong Zhang #undef __FUNCT__
3109a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental"
3119a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
3129a9e8502SHong Zhang {
3139a9e8502SHong Zhang   PetscErrorCode ierr;
3149a9e8502SHong Zhang   Mat            Ce;
3159a9e8502SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm;
3169a9e8502SHong Zhang 
3179a9e8502SHong Zhang   PetscFunctionBegin;
3189a9e8502SHong Zhang   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
3199a9e8502SHong Zhang   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
3209a9e8502SHong Zhang   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
3219a9e8502SHong Zhang   ierr = MatSetUp(Ce);CHKERRQ(ierr);
3229a9e8502SHong Zhang   *C = Ce;
3239a9e8502SHong Zhang   PetscFunctionReturn(0);
3249a9e8502SHong Zhang }
3259a9e8502SHong Zhang 
3269a9e8502SHong Zhang #undef __FUNCT__
3279a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental"
3289a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
3299a9e8502SHong Zhang {
3309a9e8502SHong Zhang   PetscErrorCode ierr;
3319a9e8502SHong Zhang 
3329a9e8502SHong Zhang   PetscFunctionBegin;
3339a9e8502SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
3349a9e8502SHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3359a9e8502SHong Zhang     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
3369a9e8502SHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
3379a9e8502SHong Zhang   }
3389a9e8502SHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
3399a9e8502SHong Zhang   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
3409a9e8502SHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
341c1d1b975SXuan Zhou   PetscFunctionReturn(0);
342c1d1b975SXuan Zhou }
343c1d1b975SXuan Zhou 
344c1d1b975SXuan Zhou #undef __FUNCT__
345df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
346df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
347df311e6cSXuan Zhou {
348df311e6cSXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
349df311e6cSXuan Zhou   Mat_Elemental      *b = (Mat_Elemental*)B->data;
350df311e6cSXuan Zhou   Mat_Elemental      *c = (Mat_Elemental*)C->data;
351e6dea9dbSXuan Zhou   PetscElemScalar    one = 1,zero = 0;
352df311e6cSXuan Zhou 
353df311e6cSXuan Zhou   PetscFunctionBegin;
354df311e6cSXuan Zhou   { /* Scoping so that constructor is called before pointer is returned */
355df311e6cSXuan Zhou     elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
356df311e6cSXuan Zhou   }
357df311e6cSXuan Zhou   C->assembled = PETSC_TRUE;
358df311e6cSXuan Zhou   PetscFunctionReturn(0);
359df311e6cSXuan Zhou }
360df311e6cSXuan Zhou 
361df311e6cSXuan Zhou #undef __FUNCT__
362df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
363df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
364df311e6cSXuan Zhou {
365df311e6cSXuan Zhou   PetscErrorCode ierr;
366df311e6cSXuan Zhou   Mat            Ce;
367df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
368df311e6cSXuan Zhou 
369df311e6cSXuan Zhou   PetscFunctionBegin;
370df311e6cSXuan Zhou   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
371df311e6cSXuan Zhou   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
372df311e6cSXuan Zhou   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
373df311e6cSXuan Zhou   ierr = MatSetUp(Ce);CHKERRQ(ierr);
374df311e6cSXuan Zhou   *C = Ce;
375df311e6cSXuan Zhou   PetscFunctionReturn(0);
376df311e6cSXuan Zhou }
377df311e6cSXuan Zhou 
378df311e6cSXuan Zhou #undef __FUNCT__
379df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental"
380df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
381df311e6cSXuan Zhou {
382df311e6cSXuan Zhou   PetscErrorCode ierr;
383df311e6cSXuan Zhou 
384df311e6cSXuan Zhou   PetscFunctionBegin;
385df311e6cSXuan Zhou   if (scall == MAT_INITIAL_MATRIX){
386df311e6cSXuan Zhou     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
387df311e6cSXuan Zhou     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
388df311e6cSXuan Zhou     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
389df311e6cSXuan Zhou   }
390df311e6cSXuan Zhou   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
391df311e6cSXuan Zhou   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
392df311e6cSXuan Zhou   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
393df311e6cSXuan Zhou   PetscFunctionReturn(0);
394df311e6cSXuan Zhou }
395df311e6cSXuan Zhou 
396df311e6cSXuan Zhou #undef __FUNCT__
3974ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental"
398e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
39965b78793SXuan Zhou {
40065b78793SXuan Zhou   Mat_Elemental  *x = (Mat_Elemental*)X->data;
40165b78793SXuan Zhou 
40265b78793SXuan Zhou   PetscFunctionBegin;
403e6dea9dbSXuan Zhou   elem::Scal((PetscElemScalar)a,*x->emat);
40465b78793SXuan Zhou   PetscFunctionReturn(0);
40565b78793SXuan Zhou }
40665b78793SXuan Zhou 
40765b78793SXuan Zhou #undef __FUNCT__
4084ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental"
409e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
410e09a3074SHong Zhang {
411e09a3074SHong Zhang   Mat_Elemental  *x = (Mat_Elemental*)X->data;
412e09a3074SHong Zhang   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
413e09a3074SHong Zhang 
414e09a3074SHong Zhang   PetscFunctionBegin;
415e6dea9dbSXuan Zhou   elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
416e09a3074SHong Zhang   PetscFunctionReturn(0);
417e09a3074SHong Zhang }
418e09a3074SHong Zhang 
419ae844d54SHong Zhang #undef __FUNCT__
420d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental"
421d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
422d6223691SXuan Zhou {
423d6223691SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
424d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
425d6223691SXuan Zhou 
426d6223691SXuan Zhou   PetscFunctionBegin;
427d6223691SXuan Zhou   elem::Copy(*a->emat,*b->emat);
428d6223691SXuan Zhou   PetscFunctionReturn(0);
429d6223691SXuan Zhou }
430d6223691SXuan Zhou 
431d6223691SXuan Zhou #undef __FUNCT__
432df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental"
433df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
434df311e6cSXuan Zhou {
435df311e6cSXuan Zhou   Mat            Be;
436df311e6cSXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
437df311e6cSXuan Zhou   Mat_Elemental  *a=(Mat_Elemental*)A->data;
438df311e6cSXuan Zhou   PetscErrorCode ierr;
439df311e6cSXuan Zhou 
440df311e6cSXuan Zhou   PetscFunctionBegin;
441df311e6cSXuan Zhou   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
442df311e6cSXuan Zhou   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
443df311e6cSXuan Zhou   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
444df311e6cSXuan Zhou   ierr = MatSetUp(Be);CHKERRQ(ierr);
445df311e6cSXuan Zhou   *B = Be;
446df311e6cSXuan Zhou   if (op == MAT_COPY_VALUES) {
447df311e6cSXuan Zhou     Mat_Elemental *b=(Mat_Elemental*)Be->data;
448df311e6cSXuan Zhou     elem::Copy(*a->emat,*b->emat);
449df311e6cSXuan Zhou   }
450df311e6cSXuan Zhou   Be->assembled = PETSC_TRUE;
451df311e6cSXuan Zhou   PetscFunctionReturn(0);
452df311e6cSXuan Zhou }
453df311e6cSXuan Zhou 
454df311e6cSXuan Zhou #undef __FUNCT__
455d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental"
456d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
457d6223691SXuan Zhou {
4583512f328SXuan Zhou   /* Only out-of-place supported */
4595262d616SXuan Zhou   Mat            Be;
4605262d616SXuan Zhou   PetscErrorCode ierr;
4615262d616SXuan Zhou   MPI_Comm       comm=((PetscObject)A)->comm;
4624fe7bbcaSHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
463d6223691SXuan Zhou 
464d6223691SXuan Zhou   PetscFunctionBegin;
4655262d616SXuan Zhou   if (reuse == MAT_INITIAL_MATRIX){
4665262d616SXuan Zhou     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
4675262d616SXuan Zhou     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
4685262d616SXuan Zhou     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
4695262d616SXuan Zhou     ierr = MatSetUp(Be);CHKERRQ(ierr);
4705262d616SXuan Zhou     *B = Be;
4715262d616SXuan Zhou   }
4724fe7bbcaSHong Zhang   b = (Mat_Elemental*)Be->data;
4735262d616SXuan Zhou   elem::Transpose(*a->emat,*b->emat);
4745262d616SXuan Zhou   Be->assembled = PETSC_TRUE;
475d6223691SXuan Zhou   PetscFunctionReturn(0);
476d6223691SXuan Zhou }
477d6223691SXuan Zhou 
478d6223691SXuan Zhou #undef __FUNCT__
479*dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental"
480*dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A)
481*dfcb0403SXuan Zhou {
482*dfcb0403SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
483*dfcb0403SXuan Zhou 
484*dfcb0403SXuan Zhou   PetscFunctionBegin;
485*dfcb0403SXuan Zhou   elem::Conjugate(*a->emat);
486*dfcb0403SXuan Zhou   PetscFunctionReturn(0);
487*dfcb0403SXuan Zhou }
488*dfcb0403SXuan Zhou 
489*dfcb0403SXuan Zhou #undef __FUNCT__
4901f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental"
4911f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
4921f881ff8SXuan Zhou {
4931f881ff8SXuan Zhou   Mat_Elemental     *a = (Mat_Elemental*)A->data;
4941f881ff8SXuan Zhou   PetscErrorCode    ierr;
495df311e6cSXuan Zhou   PetscElemScalar   *x;
4961f881ff8SXuan Zhou 
4971f881ff8SXuan Zhou   PetscFunctionBegin;
49845cf121fSXuan Zhou   ierr = VecCopy(B,X);CHKERRQ(ierr);
499e6dea9dbSXuan Zhou   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
500df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid);
501df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe;
502fc54b460SXuan Zhou   switch (A->factortype) {
503fc54b460SXuan Zhou   case MAT_FACTOR_LU:
5041f881ff8SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5054b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer);
50645cf121fSXuan Zhou       elem::Copy(xer,xe);
507fc54b460SXuan Zhou     } else {
5084b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,xer);
50945cf121fSXuan Zhou       elem::Copy(xer,xe);
5101f881ff8SXuan Zhou     }
511fc54b460SXuan Zhou     break;
512fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
513fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer);
514fc54b460SXuan Zhou     elem::Copy(xer,xe);
515fc54b460SXuan Zhou     break;
516fc54b460SXuan Zhou   default:
5174fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
518fc54b460SXuan Zhou     break;
5191f881ff8SXuan Zhou   }
520e6dea9dbSXuan Zhou   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
5211f881ff8SXuan Zhou   PetscFunctionReturn(0);
5221f881ff8SXuan Zhou }
5231f881ff8SXuan Zhou 
5241f881ff8SXuan Zhou #undef __FUNCT__
525df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental"
526df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
527df311e6cSXuan Zhou {
528df311e6cSXuan Zhou   PetscErrorCode    ierr;
529df311e6cSXuan Zhou 
530df311e6cSXuan Zhou   PetscFunctionBegin;
531df311e6cSXuan Zhou   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
5323d7f40dbSXuan Zhou   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
533df311e6cSXuan Zhou   PetscFunctionReturn(0);
534df311e6cSXuan Zhou }
535df311e6cSXuan Zhou 
536df311e6cSXuan Zhou #undef __FUNCT__
537ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental"
538ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
539ae844d54SHong Zhang {
5401f0e42cfSHong Zhang   Mat_Elemental *a=(Mat_Elemental*)A->data;
541d6223691SXuan Zhou   Mat_Elemental *b=(Mat_Elemental*)B->data;
5421f0e42cfSHong Zhang   Mat_Elemental *x=(Mat_Elemental*)X->data;
5431f0e42cfSHong Zhang 
544ae844d54SHong Zhang   PetscFunctionBegin;
545d6223691SXuan Zhou   elem::Copy(*b->emat,*x->emat);
546fc54b460SXuan Zhou   switch (A->factortype) {
547fc54b460SXuan Zhou   case MAT_FACTOR_LU:
548d6223691SXuan Zhou     if ((*a->pivot).AllocatedMemory()) {
5494b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat);
550fc54b460SXuan Zhou     } else {
5514b28e8e8SXuan Zhou       elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat);
552d6223691SXuan Zhou     }
553fc54b460SXuan Zhou     break;
554fc54b460SXuan Zhou   case MAT_FACTOR_CHOLESKY:
555fc54b460SXuan Zhou     elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat);
556fc54b460SXuan Zhou     break;
557fc54b460SXuan Zhou   default:
5584fe7bbcaSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
559fc54b460SXuan Zhou     break;
560fc54b460SXuan Zhou   }
561ae844d54SHong Zhang   PetscFunctionReturn(0);
562ae844d54SHong Zhang }
563ae844d54SHong Zhang 
564ae844d54SHong Zhang #undef __FUNCT__
565ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental"
566ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
567ae844d54SHong Zhang {
5687c920d81SXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
5697c920d81SXuan Zhou 
570ae844d54SHong Zhang   PetscFunctionBegin;
571d6223691SXuan Zhou   if (info->dtcol){
5727c920d81SXuan Zhou     elem::LU(*a->emat,*a->pivot);
5731293973dSHong Zhang   } else {
574d6223691SXuan Zhou     elem::LU(*a->emat);
575d6223691SXuan Zhou   }
5761293973dSHong Zhang   A->factortype = MAT_FACTOR_LU;
577834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
578ae844d54SHong Zhang   PetscFunctionReturn(0);
579ae844d54SHong Zhang }
580ae844d54SHong Zhang 
581d7c3f9d8SHong Zhang #undef __FUNCT__
582d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental"
583d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
584d7c3f9d8SHong Zhang {
585d7c3f9d8SHong Zhang   PetscErrorCode ierr;
586d7c3f9d8SHong Zhang 
587d7c3f9d8SHong Zhang   PetscFunctionBegin;
588d7c3f9d8SHong Zhang   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
589d7c3f9d8SHong Zhang   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
590d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
591d7c3f9d8SHong Zhang }
592d7c3f9d8SHong Zhang 
593d7c3f9d8SHong Zhang #undef __FUNCT__
594d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
595d7c3f9d8SHong Zhang static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
596d7c3f9d8SHong Zhang {
597d7c3f9d8SHong Zhang   PetscFunctionBegin;
598d7c3f9d8SHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
599d7c3f9d8SHong Zhang   PetscFunctionReturn(0);
600d7c3f9d8SHong Zhang }
601d7c3f9d8SHong Zhang 
60245cf121fSXuan Zhou #undef __FUNCT__
60345cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental"
60445cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
60545cf121fSXuan Zhou {
60645cf121fSXuan Zhou   Mat_Elemental  *a = (Mat_Elemental*)A->data;
607df311e6cSXuan Zhou   elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d;
60845cf121fSXuan Zhou 
60945cf121fSXuan Zhou   PetscFunctionBegin;
610c9fc186eSXuan Zhou   elem::Cholesky(elem::UPPER,*a->emat);
611fc54b460SXuan Zhou   A->factortype = MAT_FACTOR_CHOLESKY;
612834d3fecSHong Zhang   A->assembled  = PETSC_TRUE;
61345cf121fSXuan Zhou   PetscFunctionReturn(0);
61445cf121fSXuan Zhou }
61545cf121fSXuan Zhou 
61679673f7bSHong Zhang #undef __FUNCT__
61779673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
61879673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
61979673f7bSHong Zhang {
620cb76c1d8SXuan Zhou   PetscErrorCode ierr;
621cb76c1d8SXuan Zhou 
622cb76c1d8SXuan Zhou   PetscFunctionBegin;
623cb76c1d8SXuan Zhou   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
624cb76c1d8SXuan Zhou   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
625cb76c1d8SXuan Zhou   PetscFunctionReturn(0);
62679673f7bSHong Zhang }
627cb76c1d8SXuan Zhou 
62879673f7bSHong Zhang #undef __FUNCT__
62979673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
63079673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
63179673f7bSHong Zhang {
63279673f7bSHong Zhang   PetscFunctionBegin;
63379673f7bSHong Zhang   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
63479673f7bSHong Zhang   PetscFunctionReturn(0);
63579673f7bSHong Zhang }
63679673f7bSHong Zhang 
63715767789SHong Zhang EXTERN_C_BEGIN
6381293973dSHong Zhang #undef __FUNCT__
63915767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
64015767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
64115767789SHong Zhang {
64215767789SHong Zhang   PetscFunctionBegin;
64315767789SHong Zhang   *type = MATSOLVERELEMENTAL;
64415767789SHong Zhang   PetscFunctionReturn(0);
64515767789SHong Zhang }
64615767789SHong Zhang EXTERN_C_END
64715767789SHong Zhang 
64815767789SHong Zhang EXTERN_C_BEGIN
64915767789SHong Zhang #undef __FUNCT__
65015767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental"
65115767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
6521293973dSHong Zhang {
6531293973dSHong Zhang   Mat            B;
6541293973dSHong Zhang   PetscErrorCode ierr;
6551293973dSHong Zhang 
6561293973dSHong Zhang   PetscFunctionBegin;
6571293973dSHong Zhang   /* Create the factorization matrix */
6581293973dSHong Zhang   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
6591293973dSHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
6601293973dSHong Zhang   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
6611293973dSHong Zhang   ierr = MatSetUp(B);CHKERRQ(ierr);
6621293973dSHong Zhang   B->factortype = ftype;
66315767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
6641293973dSHong Zhang   *F            = B;
6651293973dSHong Zhang   PetscFunctionReturn(0);
6661293973dSHong Zhang }
66715767789SHong Zhang EXTERN_C_END
6681293973dSHong Zhang 
6691f881ff8SXuan Zhou #undef __FUNCT__
6701f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental"
6711f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
6721f881ff8SXuan Zhou {
6731f881ff8SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
6741f881ff8SXuan Zhou 
6751f881ff8SXuan Zhou   PetscFunctionBegin;
6761f881ff8SXuan Zhou   switch (type){
6771f881ff8SXuan Zhou   case NORM_1:
6781f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::ONE_NORM);
6791f881ff8SXuan Zhou     break;
6801f881ff8SXuan Zhou   case NORM_FROBENIUS:
6811f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM);
6821f881ff8SXuan Zhou     break;
6831f881ff8SXuan Zhou   case NORM_INFINITY:
6841f881ff8SXuan Zhou     *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM);
6851f881ff8SXuan Zhou     break;
6861f881ff8SXuan Zhou   default:
6871f881ff8SXuan Zhou     printf("Error: unsupported norm type!\n");
6881f881ff8SXuan Zhou   }
6891f881ff8SXuan Zhou   PetscFunctionReturn(0);
6901f881ff8SXuan Zhou }
6911f881ff8SXuan Zhou 
6925262d616SXuan Zhou #undef __FUNCT__
6935262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental"
6945262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A)
6955262d616SXuan Zhou {
6965262d616SXuan Zhou   Mat_Elemental *a=(Mat_Elemental*)A->data;
6975262d616SXuan Zhou 
6985262d616SXuan Zhou   PetscFunctionBegin;
6995262d616SXuan Zhou   elem::Zero(*a->emat);
7005262d616SXuan Zhou   PetscFunctionReturn(0);
7015262d616SXuan Zhou }
7025262d616SXuan Zhou 
7031293973dSHong Zhang EXTERN_C_BEGIN
704e09a3074SHong Zhang #undef __FUNCT__
705db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental"
706db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
707db31f6deSJed Brown {
708db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
709db31f6deSJed Brown   PetscErrorCode ierr;
710db31f6deSJed Brown   PetscInt       i,m,shift,stride,*idx;
711db31f6deSJed Brown 
712db31f6deSJed Brown   PetscFunctionBegin;
713db31f6deSJed Brown   if (rows) {
714db31f6deSJed Brown     m = a->emat->LocalHeight();
715db31f6deSJed Brown     shift = a->emat->ColShift();
716db31f6deSJed Brown     stride = a->emat->ColStride();
717db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
718db31f6deSJed Brown     for (i=0; i<m; i++) {
719db31f6deSJed Brown       PetscInt rank,offset;
720db31f6deSJed Brown       E2RO(A,0,shift+i*stride,&rank,&offset);
721db31f6deSJed Brown       RO2P(A,0,rank,offset,&idx[i]);
722db31f6deSJed Brown     }
723db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
724db31f6deSJed Brown   }
725db31f6deSJed Brown   if (cols) {
726db31f6deSJed Brown     m = a->emat->LocalWidth();
727db31f6deSJed Brown     shift = a->emat->RowShift();
728db31f6deSJed Brown     stride = a->emat->RowStride();
729db31f6deSJed Brown     ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr);
730db31f6deSJed Brown     for (i=0; i<m; i++) {
731db31f6deSJed Brown       PetscInt rank,offset;
732db31f6deSJed Brown       E2RO(A,1,shift+i*stride,&rank,&offset);
733db31f6deSJed Brown       RO2P(A,1,rank,offset,&idx[i]);
734db31f6deSJed Brown     }
735db31f6deSJed Brown     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
736db31f6deSJed Brown   }
737db31f6deSJed Brown   PetscFunctionReturn(0);
738db31f6deSJed Brown }
7391293973dSHong Zhang EXTERN_C_END
740db31f6deSJed Brown 
741db31f6deSJed Brown #undef __FUNCT__
7422ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense"
7432ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B)
744af295397SXuan Zhou {
7452ef0cf24SXuan Zhou   Mat                Bmpi;
746af295397SXuan Zhou   Mat_Elemental      *a = (Mat_Elemental*)A->data;
747af295397SXuan Zhou   MPI_Comm           comm=((PetscObject)A)->comm;
7482ef0cf24SXuan Zhou   PetscErrorCode     ierr;
7492ef0cf24SXuan Zhou   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j;
750df311e6cSXuan Zhou   PetscElemScalar    v;
751af295397SXuan Zhou 
752af295397SXuan Zhou   PetscFunctionBegin;
753c4ad791aSXuan Zhou   if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) {
754c4ad791aSXuan Zhou     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE");
755c4ad791aSXuan Zhou   }
756af295397SXuan Zhou   ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
757af295397SXuan Zhou   ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
7582ef0cf24SXuan Zhou   ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
759af295397SXuan Zhou   ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
7602ef0cf24SXuan Zhou   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
7612ef0cf24SXuan Zhou   for (i=0; i<nrows; i++) {
7622ef0cf24SXuan Zhou     PetscInt erow,ecol;
7632ef0cf24SXuan Zhou     P2RO(A,0,i,&rrank,&ridx);
7642ef0cf24SXuan Zhou     RO2E(A,0,rrank,ridx,&erow);
7652ef0cf24SXuan Zhou     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
7662ef0cf24SXuan Zhou     for (j=0; j<ncols; j++) {
7672ef0cf24SXuan Zhou       P2RO(A,1,j,&crank,&cidx);
7682ef0cf24SXuan Zhou       RO2E(A,1,crank,cidx,&ecol);
7692ef0cf24SXuan Zhou       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
7702ef0cf24SXuan Zhou       v = a->emat->Get(erow,ecol);
771e6dea9dbSXuan Zhou       ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
7722ef0cf24SXuan Zhou     }
7732ef0cf24SXuan Zhou   }
774af295397SXuan Zhou   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
775af295397SXuan Zhou   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
776c4ad791aSXuan Zhou   if (reuse == MAT_REUSE_MATRIX) {
777c4ad791aSXuan Zhou     ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr);
778c4ad791aSXuan Zhou   } else {
779c4ad791aSXuan Zhou     *B = Bmpi;
780c4ad791aSXuan Zhou   }
781af295397SXuan Zhou   PetscFunctionReturn(0);
782af295397SXuan Zhou }
783af295397SXuan Zhou 
784af295397SXuan Zhou #undef __FUNCT__
785db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental"
786db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A)
787db31f6deSJed Brown {
788db31f6deSJed Brown   Mat_Elemental      *a = (Mat_Elemental*)A->data;
789db31f6deSJed Brown   PetscErrorCode     ierr;
7905e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
7915e9f5b67SHong Zhang   PetscBool          flg;
7925e9f5b67SHong Zhang   MPI_Comm           icomm;
793db31f6deSJed Brown 
794db31f6deSJed Brown   PetscFunctionBegin;
795c1ee1e62SHong Zhang   a->interface->Detach();
796aae2c449SHong Zhang   delete a->interface;
797aae2c449SHong Zhang   delete a->esubmat;
798db31f6deSJed Brown   delete a->emat;
7995e9f5b67SHong Zhang 
800180a43e4SHong Zhang   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
8015e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
8025e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
8035e9f5b67SHong Zhang   if (--commgrid->grid_refct == 0) {
8045e9f5b67SHong Zhang     delete commgrid->grid;
8055e9f5b67SHong Zhang     ierr = PetscFree(commgrid);CHKERRQ(ierr);
8065e9f5b67SHong Zhang   }
8075e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
808db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr);
8091293973dSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr);
81015767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr);
811db31f6deSJed Brown   ierr = PetscFree(A->data);CHKERRQ(ierr);
812db31f6deSJed Brown   PetscFunctionReturn(0);
813db31f6deSJed Brown }
814db31f6deSJed Brown 
815db31f6deSJed Brown #undef __FUNCT__
816db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental"
817db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A)
818db31f6deSJed Brown {
819db31f6deSJed Brown   Mat_Elemental  *a = (Mat_Elemental*)A->data;
820db31f6deSJed Brown   PetscErrorCode ierr;
821db31f6deSJed Brown   PetscMPIInt    rsize,csize;
822db31f6deSJed Brown 
823db31f6deSJed Brown   PetscFunctionBegin;
824db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
825db31f6deSJed Brown   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
826db31f6deSJed Brown 
827db31f6deSJed Brown   a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
828db31f6deSJed Brown   elem::Zero(*a->emat);
829db31f6deSJed Brown 
830db31f6deSJed Brown   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
831db31f6deSJed Brown   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
832db31f6deSJed Brown   if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
833db31f6deSJed Brown   a->commsize = rsize;
834db31f6deSJed Brown   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
835db31f6deSJed Brown   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
836db31f6deSJed Brown   a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize);
837db31f6deSJed Brown   a->m[1] = A->cmap->N / csize + (a->mr[1] != csize);
838db31f6deSJed Brown   PetscFunctionReturn(0);
839db31f6deSJed Brown }
840db31f6deSJed Brown 
841aae2c449SHong Zhang #undef __FUNCT__
842aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental"
843aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
844aae2c449SHong Zhang {
845aae2c449SHong Zhang   Mat_Elemental  *a = (Mat_Elemental*)A->data;
846aae2c449SHong Zhang 
847aae2c449SHong Zhang   PetscFunctionBegin;
848aae2c449SHong Zhang   a->interface->Detach();
849aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
850aae2c449SHong Zhang   PetscFunctionReturn(0);
851aae2c449SHong Zhang }
852aae2c449SHong Zhang 
853aae2c449SHong Zhang #undef __FUNCT__
854aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental"
855aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
856aae2c449SHong Zhang {
857aae2c449SHong Zhang   PetscFunctionBegin;
858aae2c449SHong Zhang   /* Currently does nothing */
859aae2c449SHong Zhang   PetscFunctionReturn(0);
860aae2c449SHong Zhang }
861aae2c449SHong Zhang 
86240d92e34SHong Zhang /* -------------------------------------------------------------------*/
86340d92e34SHong Zhang static struct _MatOps MatOps_Values = {
86440d92e34SHong Zhang        MatSetValues_Elemental,
86540d92e34SHong Zhang        0,
86640d92e34SHong Zhang        0,
86740d92e34SHong Zhang        MatMult_Elemental,
86840d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental,
8699426833fSXuan Zhou        MatMultTranspose_Elemental,
870e883f9d5SXuan Zhou        MatMultTransposeAdd_Elemental,
87140d92e34SHong Zhang        MatSolve_Elemental,
872df311e6cSXuan Zhou        MatSolveAdd_Elemental,
87340d92e34SHong Zhang        0, //MatSolveTranspose_Elemental,
87440d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental,
87540d92e34SHong Zhang        MatLUFactor_Elemental,
87640d92e34SHong Zhang        MatCholeskyFactor_Elemental,
87740d92e34SHong Zhang        0,
87840d92e34SHong Zhang        MatTranspose_Elemental,
87940d92e34SHong Zhang /*15*/ MatGetInfo_Elemental,
88040d92e34SHong Zhang        0,
88140d92e34SHong Zhang        0,
88240d92e34SHong Zhang        0,
88340d92e34SHong Zhang        MatNorm_Elemental,
88440d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental,
88540d92e34SHong Zhang        MatAssemblyEnd_Elemental,
88640d92e34SHong Zhang        0, //MatSetOption_Elemental,
88740d92e34SHong Zhang        MatZeroEntries_Elemental,
88840d92e34SHong Zhang /*24*/ 0,
88940d92e34SHong Zhang        MatLUFactorSymbolic_Elemental,
89040d92e34SHong Zhang        MatLUFactorNumeric_Elemental,
89140d92e34SHong Zhang        MatCholeskyFactorSymbolic_Elemental,
89240d92e34SHong Zhang        MatCholeskyFactorNumeric_Elemental,
89340d92e34SHong Zhang /*29*/ MatSetUp_Elemental,
89440d92e34SHong Zhang        0,
89540d92e34SHong Zhang        0,
89640d92e34SHong Zhang        0,
89740d92e34SHong Zhang        0,
898df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental,
89940d92e34SHong Zhang        0,
90040d92e34SHong Zhang        0,
90140d92e34SHong Zhang        0,
90240d92e34SHong Zhang        0,
90340d92e34SHong Zhang /*39*/ MatAXPY_Elemental,
90440d92e34SHong Zhang        0,
90540d92e34SHong Zhang        0,
90640d92e34SHong Zhang        0,
90740d92e34SHong Zhang        MatCopy_Elemental,
90840d92e34SHong Zhang /*44*/ 0,
90940d92e34SHong Zhang        MatScale_Elemental,
91040d92e34SHong Zhang        0,
91140d92e34SHong Zhang        0,
91240d92e34SHong Zhang        0,
91340d92e34SHong Zhang /*49*/ 0,
91440d92e34SHong Zhang        0,
91540d92e34SHong Zhang        0,
91640d92e34SHong Zhang        0,
91740d92e34SHong Zhang        0,
91840d92e34SHong Zhang /*54*/ 0,
91940d92e34SHong Zhang        0,
92040d92e34SHong Zhang        0,
92140d92e34SHong Zhang        0,
92240d92e34SHong Zhang        0,
92340d92e34SHong Zhang /*59*/ 0,
92440d92e34SHong Zhang        MatDestroy_Elemental,
92540d92e34SHong Zhang        MatView_Elemental,
92640d92e34SHong Zhang        0,
92740d92e34SHong Zhang        0,
92840d92e34SHong Zhang /*64*/ 0,
92940d92e34SHong Zhang        0,
93040d92e34SHong Zhang        0,
93140d92e34SHong Zhang        0,
93240d92e34SHong Zhang        0,
93340d92e34SHong Zhang /*69*/ 0,
93440d92e34SHong Zhang        0,
9352ef0cf24SXuan Zhou        MatConvert_Elemental_Dense,
93640d92e34SHong Zhang        0,
93740d92e34SHong Zhang        0,
93840d92e34SHong Zhang /*74*/ 0,
93940d92e34SHong Zhang        0,
94040d92e34SHong Zhang        0,
94140d92e34SHong Zhang        0,
94240d92e34SHong Zhang        0,
94340d92e34SHong Zhang /*79*/ 0,
94440d92e34SHong Zhang        0,
94540d92e34SHong Zhang        0,
94640d92e34SHong Zhang        0,
94740d92e34SHong Zhang        0,
94840d92e34SHong Zhang /*84*/ 0,
94940d92e34SHong Zhang        0,
95040d92e34SHong Zhang        0,
95140d92e34SHong Zhang        0,
95240d92e34SHong Zhang        0,
95340d92e34SHong Zhang /*89*/ MatMatMult_Elemental,
95440d92e34SHong Zhang        MatMatMultSymbolic_Elemental,
95540d92e34SHong Zhang        MatMatMultNumeric_Elemental,
95640d92e34SHong Zhang        0,
95740d92e34SHong Zhang        0,
95840d92e34SHong Zhang /*94*/ 0,
959df311e6cSXuan Zhou        MatMatTransposeMult_Elemental,
960df311e6cSXuan Zhou        MatMatTransposeMultSymbolic_Elemental,
961df311e6cSXuan Zhou        MatMatTransposeMultNumeric_Elemental,
96240d92e34SHong Zhang        0,
96340d92e34SHong Zhang /*99*/ 0,
96440d92e34SHong Zhang        0,
96540d92e34SHong Zhang        0,
966*dfcb0403SXuan Zhou        MatConjugate_Elemental,
96740d92e34SHong Zhang        0,
96840d92e34SHong Zhang /*104*/0,
96940d92e34SHong Zhang        0,
97040d92e34SHong Zhang        0,
97140d92e34SHong Zhang        0,
97240d92e34SHong Zhang        0,
97340d92e34SHong Zhang /*109*/MatMatSolve_Elemental,
97440d92e34SHong Zhang        0,
97540d92e34SHong Zhang        0,
97640d92e34SHong Zhang        0,
97740d92e34SHong Zhang        0,
97840d92e34SHong Zhang /*114*/0,
97940d92e34SHong Zhang        0,
98040d92e34SHong Zhang        0,
98140d92e34SHong Zhang        0,
98240d92e34SHong Zhang        0,
98340d92e34SHong Zhang /*119*/0,
98440d92e34SHong Zhang        0,
98540d92e34SHong Zhang        0,
98640d92e34SHong Zhang        0,
98740d92e34SHong Zhang        0,
98840d92e34SHong Zhang /*124*/0,
98940d92e34SHong Zhang        0,
99040d92e34SHong Zhang        0,
99140d92e34SHong Zhang        0,
99240d92e34SHong Zhang        0,
99340d92e34SHong Zhang /*129*/0,
99440d92e34SHong Zhang        0,
99540d92e34SHong Zhang        0,
99640d92e34SHong Zhang        0,
99740d92e34SHong Zhang        0,
99840d92e34SHong Zhang /*134*/0,
99940d92e34SHong Zhang        0,
100040d92e34SHong Zhang        0,
100140d92e34SHong Zhang        0,
100240d92e34SHong Zhang        0
100340d92e34SHong Zhang };
100440d92e34SHong Zhang 
1005ed36708cSHong Zhang /*MC
1006ed36708cSHong Zhang    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1007ed36708cSHong Zhang 
1008ed36708cSHong Zhang    Options Database Keys:
1009ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
1010ed36708cSHong Zhang 
1011ed36708cSHong Zhang   Level: beginner
1012ed36708cSHong Zhang 
1013ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental()
1014ed36708cSHong Zhang M*/
1015ed36708cSHong Zhang EXTERN_C_BEGIN
1016db31f6deSJed Brown #undef __FUNCT__
1017db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental"
1018db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A)
1019db31f6deSJed Brown {
1020db31f6deSJed Brown   Mat_Elemental      *a;
1021db31f6deSJed Brown   PetscErrorCode     ierr;
1022ed667823SXuan Zhou   PetscBool          flg,flg1,flg2;
10235e9f5b67SHong Zhang   Mat_Elemental_Grid *commgrid;
10245e9f5b67SHong Zhang   MPI_Comm           icomm;
1025ed667823SXuan Zhou   PetscInt           optv1,optv2;
1026db31f6deSJed Brown 
1027db31f6deSJed Brown   PetscFunctionBegin;
1028db31f6deSJed Brown   ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr);
102940d92e34SHong Zhang   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
103040d92e34SHong Zhang   A->insertmode = NOT_SET_VALUES;
1031db31f6deSJed Brown 
1032db31f6deSJed Brown   ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr);
1033db31f6deSJed Brown   A->data = (void*)a;
1034db31f6deSJed Brown 
1035db31f6deSJed Brown   /* Set up the elemental matrix */
1036db31f6deSJed Brown   elem::mpi::Comm cxxcomm(((PetscObject)A)->comm);
1037ed667823SXuan Zhou   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
10385e9f5b67SHong Zhang 
10395e9f5b67SHong Zhang   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
10405e9f5b67SHong Zhang   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1041180a43e4SHong Zhang     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);
10425e9f5b67SHong Zhang   }
10435e9f5b67SHong Zhang   ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr);
10445e9f5b67SHong Zhang   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
10455e9f5b67SHong Zhang   if (!flg) {
10465e9f5b67SHong Zhang     ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr);
10472ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
10482ef0cf24SXuan Zhou     ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr);
1049ed667823SXuan Zhou     if (flg1 || flg2) {
1050ed667823SXuan Zhou       if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) {
10512ef0cf24SXuan Zhou         SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize");
1052ed667823SXuan Zhou       }
1053ed667823SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2);
10542ef0cf24SXuan Zhou     } else {
10552ef0cf24SXuan Zhou       commgrid->grid = new elem::Grid(cxxcomm);
1056ed667823SXuan Zhou     }
10575e9f5b67SHong Zhang     commgrid->grid_refct = 1;
10585e9f5b67SHong Zhang     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
10595e9f5b67SHong Zhang   } else {
10605e9f5b67SHong Zhang     commgrid->grid_refct++;
10615e9f5b67SHong Zhang   }
10625e9f5b67SHong Zhang   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
10635e9f5b67SHong Zhang   a->grid      = commgrid->grid;
1064df311e6cSXuan Zhou   a->emat      = new elem::DistMatrix<PetscElemScalar>(*a->grid);
1065df311e6cSXuan Zhou   a->esubmat   = new elem::Matrix<PetscElemScalar>(1,1);
1066df311e6cSXuan Zhou   a->interface = new elem::AxpyInterface<PetscElemScalar>;
10677c920d81SXuan Zhou   a->pivot     = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>;
1068db31f6deSJed Brown 
1069db31f6deSJed Brown   /* build cache for off array entries formed */
1070aae2c449SHong Zhang   a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat));
1071bafd5131SHong Zhang 
1072db31f6deSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
107315767789SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr);
1074db31f6deSJed Brown 
1075db31f6deSJed Brown   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1076ed667823SXuan Zhou   PetscOptionsEnd();
1077db31f6deSJed Brown   PetscFunctionReturn(0);
1078db31f6deSJed Brown }
1079ed36708cSHong Zhang EXTERN_C_END
1080