1db31f6deSJed Brown #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2db31f6deSJed Brown 35e9f5b67SHong Zhang /* 45e9f5b67SHong Zhang The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 55e9f5b67SHong Zhang is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 65e9f5b67SHong Zhang */ 75e9f5b67SHong Zhang static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 85e9f5b67SHong Zhang 9db31f6deSJed Brown #undef __FUNCT__ 10db31f6deSJed Brown #define __FUNCT__ "PetscElementalInitializePackage" 11db31f6deSJed Brown /*@C 12db31f6deSJed Brown PetscElementalInitializePackage - Initialize Elemental package 13db31f6deSJed Brown 14db31f6deSJed Brown Logically Collective 15db31f6deSJed Brown 16db31f6deSJed Brown Input Arguments: 17db31f6deSJed Brown . path - the dynamic library path or PETSC_NULL 18db31f6deSJed Brown 19db31f6deSJed Brown Level: developer 20db31f6deSJed Brown 21db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22db31f6deSJed Brown @*/ 23db31f6deSJed Brown PetscErrorCode PetscElementalInitializePackage(const char *path) 24db31f6deSJed Brown { 25db31f6deSJed Brown PetscErrorCode ierr; 26db31f6deSJed Brown 27db31f6deSJed Brown PetscFunctionBegin; 28db31f6deSJed Brown if (elem::Initialized()) PetscFunctionReturn(0); 29db31f6deSJed Brown { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30db31f6deSJed Brown int zero = 0; 31db31f6deSJed Brown char **nothing = 0; 32db31f6deSJed Brown elem::Initialize(zero,nothing); 33db31f6deSJed Brown } 34db31f6deSJed Brown ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35db31f6deSJed Brown PetscFunctionReturn(0); 36db31f6deSJed Brown } 37db31f6deSJed Brown 38db31f6deSJed Brown #undef __FUNCT__ 39db31f6deSJed Brown #define __FUNCT__ "PetscElementalFinalizePackage" 40db31f6deSJed Brown /*@C 41db31f6deSJed Brown PetscElementalFinalizePackage - Finalize Elemental package 42db31f6deSJed Brown 43db31f6deSJed Brown Logically Collective 44db31f6deSJed Brown 45db31f6deSJed Brown Level: developer 46db31f6deSJed Brown 47db31f6deSJed Brown .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48db31f6deSJed Brown @*/ 49db31f6deSJed Brown PetscErrorCode PetscElementalFinalizePackage(void) 50db31f6deSJed Brown { 51db31f6deSJed Brown 52db31f6deSJed Brown PetscFunctionBegin; 53db31f6deSJed Brown elem::Finalize(); 54db31f6deSJed Brown PetscFunctionReturn(0); 55db31f6deSJed Brown } 56db31f6deSJed Brown 57ed667823SXuan Zhou /* Sets Elemental options from the options database */ 58ed667823SXuan Zhou #undef __FUNCT__ 59ed667823SXuan Zhou #define __FUNCT__ "PetscSetElementalFromOptions" 60ed667823SXuan Zhou PetscErrorCode PetscSetElementalFromOptions(Mat A) 61ed667823SXuan Zhou { 62ed667823SXuan Zhou PetscErrorCode ierr; 63ed667823SXuan Zhou 64ed667823SXuan Zhou PetscFunctionBegin; 65ed667823SXuan Zhou ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 66ed667823SXuan Zhou PetscOptionsEnd(); 67ed667823SXuan Zhou PetscFunctionReturn(0); 68ed667823SXuan Zhou } 69ed667823SXuan Zhou 70db31f6deSJed Brown #undef __FUNCT__ 71db31f6deSJed Brown #define __FUNCT__ "MatView_Elemental" 72db31f6deSJed Brown static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 73db31f6deSJed Brown { 74db31f6deSJed Brown PetscErrorCode ierr; 75db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 76db31f6deSJed Brown PetscBool iascii; 77db31f6deSJed Brown 78db31f6deSJed Brown PetscFunctionBegin; 79db31f6deSJed Brown ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 80db31f6deSJed Brown if (iascii) { 81db31f6deSJed Brown PetscViewerFormat format; 82db31f6deSJed Brown ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 83db31f6deSJed Brown if (format == PETSC_VIEWER_ASCII_INFO) { 8479673f7bSHong Zhang /* call elemental viewing function */ 852d8adcc7SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 86ed667823SXuan Zhou ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 87ed667823SXuan Zhou ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 884fe7bbcaSHong Zhang if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 8979673f7bSHong Zhang /* call elemental viewing function */ 9080622e0cSXuan Zhou ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 914fe7bbcaSHong Zhang } 9279673f7bSHong Zhang 93db31f6deSJed Brown } else if (format == PETSC_VIEWER_DEFAULT) { 94db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 95db31f6deSJed Brown ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 96db31f6deSJed Brown a->emat->Print("Elemental matrix (cyclic ordering)"); 97db31f6deSJed Brown ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 98834d3fecSHong Zhang if (A->factortype == MAT_FACTOR_NONE){ 99d2daa67eSHong Zhang Mat Aaij; 1000022473aSHong Zhang ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 1010022473aSHong Zhang ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 102d2daa67eSHong Zhang ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 1030022473aSHong Zhang ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 104834d3fecSHong Zhang } 105db31f6deSJed Brown } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 106d2daa67eSHong Zhang } else { 107d2daa67eSHong Zhang /* convert to aij/mpidense format and call MatView() */ 108d2daa67eSHong Zhang Mat Aaij; 109d2daa67eSHong Zhang ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 110d2daa67eSHong Zhang ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 111d2daa67eSHong Zhang ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 112d2daa67eSHong Zhang ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 113d2daa67eSHong Zhang } 114db31f6deSJed Brown PetscFunctionReturn(0); 115db31f6deSJed Brown } 116db31f6deSJed Brown 117db31f6deSJed Brown #undef __FUNCT__ 118180a43e4SHong Zhang #define __FUNCT__ "MatGetInfo_Elemental" 11915767789SHong Zhang static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 120180a43e4SHong Zhang { 12115767789SHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data; 12215767789SHong Zhang PetscMPIInt rank; 12315767789SHong Zhang 124180a43e4SHong Zhang PetscFunctionBegin; 12515767789SHong Zhang MPI_Comm_rank(((PetscObject)A)->comm,&rank); 12615767789SHong Zhang 12715767789SHong Zhang /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 12815767789SHong Zhang info->block_size = 1.0; /* ? */ 12915767789SHong Zhang 13015767789SHong Zhang if (flag == MAT_LOCAL) { 13115767789SHong Zhang info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 13215767789SHong Zhang info->nz_used = info->nz_allocated; 13315767789SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 13415767789SHong Zhang //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13515767789SHong Zhang /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 13615767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 13715767789SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 13815767789SHong Zhang //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 13915767789SHong Zhang info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 14015767789SHong Zhang info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 14115767789SHong Zhang //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 14215767789SHong Zhang //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 14315767789SHong Zhang } 14415767789SHong Zhang 14515767789SHong Zhang info->nz_unneeded = 0.0; 14615767789SHong Zhang info->assemblies = (double)A->num_ass; 14715767789SHong Zhang info->mallocs = 0; 14815767789SHong Zhang info->memory = ((PetscObject)A)->mem; 14915767789SHong Zhang info->fill_ratio_given = 0; /* determined by Elemental */ 15015767789SHong Zhang info->fill_ratio_needed = 0; 15115767789SHong Zhang info->factor_mallocs = 0; 152180a43e4SHong Zhang PetscFunctionReturn(0); 153180a43e4SHong Zhang } 154180a43e4SHong Zhang 155180a43e4SHong Zhang #undef __FUNCT__ 156db31f6deSJed Brown #define __FUNCT__ "MatSetValues_Elemental" 157e6dea9dbSXuan Zhou static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 158db31f6deSJed Brown { 159db31f6deSJed Brown PetscErrorCode ierr; 160db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 161db31f6deSJed Brown PetscMPIInt rank; 162db31f6deSJed Brown PetscInt i,j,rrank,ridx,crank,cidx; 163db31f6deSJed Brown 164db31f6deSJed Brown PetscFunctionBegin; 165db31f6deSJed Brown ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 166db31f6deSJed Brown 167db31f6deSJed Brown const elem::Grid &grid = a->emat->Grid(); 168db31f6deSJed Brown for (i=0; i<nr; i++) { 169db31f6deSJed Brown PetscInt erow,ecol,elrow,elcol; 170db31f6deSJed Brown if (rows[i] < 0) continue; 171db31f6deSJed Brown P2RO(A,0,rows[i],&rrank,&ridx); 172db31f6deSJed Brown RO2E(A,0,rrank,ridx,&erow); 173db31f6deSJed Brown if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 174db31f6deSJed Brown for (j=0; j<nc; j++) { 175db31f6deSJed Brown if (cols[j] < 0) continue; 176db31f6deSJed Brown P2RO(A,1,cols[j],&crank,&cidx); 177db31f6deSJed Brown RO2E(A,1,crank,cidx,&ecol); 178db31f6deSJed Brown if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 179aae2c449SHong Zhang if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 180aae2c449SHong Zhang if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 181aae2c449SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 182e6dea9dbSXuan Zhou a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 183aae2c449SHong Zhang a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 184aae2c449SHong Zhang continue; 185ed36708cSHong Zhang } 186db31f6deSJed Brown elrow = erow / grid.MCSize(); 187db31f6deSJed Brown elcol = ecol / grid.MRSize(); 188db31f6deSJed Brown switch (imode) { 189e6dea9dbSXuan Zhou case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 190e6dea9dbSXuan Zhou case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 191db31f6deSJed Brown default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 192db31f6deSJed Brown } 193db31f6deSJed Brown } 194db31f6deSJed Brown } 195db31f6deSJed Brown PetscFunctionReturn(0); 196db31f6deSJed Brown } 197db31f6deSJed Brown 198db31f6deSJed Brown #undef __FUNCT__ 199db31f6deSJed Brown #define __FUNCT__ "MatMult_Elemental" 200db31f6deSJed Brown static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 201db31f6deSJed Brown { 202db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 203db31f6deSJed Brown PetscErrorCode ierr; 204e6dea9dbSXuan Zhou const PetscElemScalar *x; 205e6dea9dbSXuan Zhou PetscElemScalar *y; 206df311e6cSXuan Zhou PetscElemScalar one = 1,zero = 0; 207db31f6deSJed Brown 208db31f6deSJed Brown PetscFunctionBegin; 209e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 210e6dea9dbSXuan Zhou ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 211db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 212df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 213df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 214db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 215db31f6deSJed Brown } 216e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 217e6dea9dbSXuan Zhou ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 218db31f6deSJed Brown PetscFunctionReturn(0); 219db31f6deSJed Brown } 220db31f6deSJed Brown 221db31f6deSJed Brown #undef __FUNCT__ 2229426833fSXuan Zhou #define __FUNCT__ "MatMultTranspose_Elemental" 2239426833fSXuan Zhou static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 2249426833fSXuan Zhou { 2259426833fSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 2269426833fSXuan Zhou PetscErrorCode ierr; 227df311e6cSXuan Zhou const PetscElemScalar *x; 228df311e6cSXuan Zhou PetscElemScalar *y; 229e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 2309426833fSXuan Zhou 2319426833fSXuan Zhou PetscFunctionBegin; 232e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 233e6dea9dbSXuan Zhou ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 2349426833fSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 235df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 236df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 2379426833fSXuan Zhou elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 2389426833fSXuan Zhou } 239e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 240e6dea9dbSXuan Zhou ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 2419426833fSXuan Zhou PetscFunctionReturn(0); 2429426833fSXuan Zhou } 2439426833fSXuan Zhou 2449426833fSXuan Zhou #undef __FUNCT__ 245db31f6deSJed Brown #define __FUNCT__ "MatMultAdd_Elemental" 246db31f6deSJed Brown static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 247db31f6deSJed Brown { 248db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 249db31f6deSJed Brown PetscErrorCode ierr; 250df311e6cSXuan Zhou const PetscElemScalar *x; 251df311e6cSXuan Zhou PetscElemScalar *z; 252e6dea9dbSXuan Zhou PetscElemScalar one = 1; 253db31f6deSJed Brown 254db31f6deSJed Brown PetscFunctionBegin; 255db31f6deSJed Brown if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 256e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 257e6dea9dbSXuan Zhou ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 258db31f6deSJed Brown { /* Scoping so that constructor is called before pointer is returned */ 259df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 260df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 261db31f6deSJed Brown elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 262db31f6deSJed Brown } 263e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 264e6dea9dbSXuan Zhou ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 265db31f6deSJed Brown PetscFunctionReturn(0); 266db31f6deSJed Brown } 267db31f6deSJed Brown 268db31f6deSJed Brown #undef __FUNCT__ 269e883f9d5SXuan Zhou #define __FUNCT__ "MatMultTransposeAdd_Elemental" 270e883f9d5SXuan Zhou static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 271e883f9d5SXuan Zhou { 272e883f9d5SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 273e883f9d5SXuan Zhou PetscErrorCode ierr; 274df311e6cSXuan Zhou const PetscElemScalar *x; 275df311e6cSXuan Zhou PetscElemScalar *z; 276e6dea9dbSXuan Zhou PetscElemScalar one = 1; 277e883f9d5SXuan Zhou 278e883f9d5SXuan Zhou PetscFunctionBegin; 279e883f9d5SXuan Zhou if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 280e6dea9dbSXuan Zhou ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 281e6dea9dbSXuan Zhou ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 282e883f9d5SXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 283df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 284df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 285e883f9d5SXuan Zhou elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 286e883f9d5SXuan Zhou } 287e6dea9dbSXuan Zhou ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 288e6dea9dbSXuan Zhou ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 289e883f9d5SXuan Zhou PetscFunctionReturn(0); 290e883f9d5SXuan Zhou } 291e883f9d5SXuan Zhou 292e883f9d5SXuan Zhou #undef __FUNCT__ 2939a9e8502SHong Zhang #define __FUNCT__ "MatMatMultNumeric_Elemental" 2949a9e8502SHong Zhang static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 295c1d1b975SXuan Zhou { 296c1d1b975SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 297c1d1b975SXuan Zhou Mat_Elemental *b = (Mat_Elemental*)B->data; 2989a9e8502SHong Zhang Mat_Elemental *c = (Mat_Elemental*)C->data; 299e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 300c1d1b975SXuan Zhou 301c1d1b975SXuan Zhou PetscFunctionBegin; 302aae2c449SHong Zhang { /* Scoping so that constructor is called before pointer is returned */ 303c1d1b975SXuan Zhou elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 304aae2c449SHong Zhang } 3059a9e8502SHong Zhang C->assembled = PETSC_TRUE; 3069a9e8502SHong Zhang PetscFunctionReturn(0); 3079a9e8502SHong Zhang } 3089a9e8502SHong Zhang 3099a9e8502SHong Zhang #undef __FUNCT__ 3109a9e8502SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_Elemental" 3119a9e8502SHong Zhang static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 3129a9e8502SHong Zhang { 3139a9e8502SHong Zhang PetscErrorCode ierr; 3149a9e8502SHong Zhang Mat Ce; 3159a9e8502SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 3169a9e8502SHong Zhang 3179a9e8502SHong Zhang PetscFunctionBegin; 3189a9e8502SHong Zhang ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 3199a9e8502SHong Zhang ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 3209a9e8502SHong Zhang ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 3219a9e8502SHong Zhang ierr = MatSetUp(Ce);CHKERRQ(ierr); 3229a9e8502SHong Zhang *C = Ce; 3239a9e8502SHong Zhang PetscFunctionReturn(0); 3249a9e8502SHong Zhang } 3259a9e8502SHong Zhang 3269a9e8502SHong Zhang #undef __FUNCT__ 3279a9e8502SHong Zhang #define __FUNCT__ "MatMatMult_Elemental" 3289a9e8502SHong Zhang static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 3299a9e8502SHong Zhang { 3309a9e8502SHong Zhang PetscErrorCode ierr; 3319a9e8502SHong Zhang 3329a9e8502SHong Zhang PetscFunctionBegin; 3339a9e8502SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 3349a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 3359a9e8502SHong Zhang ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 3369a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 3379a9e8502SHong Zhang } 3389a9e8502SHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 3399a9e8502SHong Zhang ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 3409a9e8502SHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 341c1d1b975SXuan Zhou PetscFunctionReturn(0); 342c1d1b975SXuan Zhou } 343c1d1b975SXuan Zhou 344c1d1b975SXuan Zhou #undef __FUNCT__ 345df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 346df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 347df311e6cSXuan Zhou { 348df311e6cSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 349df311e6cSXuan Zhou Mat_Elemental *b = (Mat_Elemental*)B->data; 350df311e6cSXuan Zhou Mat_Elemental *c = (Mat_Elemental*)C->data; 351e6dea9dbSXuan Zhou PetscElemScalar one = 1,zero = 0; 352df311e6cSXuan Zhou 353df311e6cSXuan Zhou PetscFunctionBegin; 354df311e6cSXuan Zhou { /* Scoping so that constructor is called before pointer is returned */ 355df311e6cSXuan Zhou elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 356df311e6cSXuan Zhou } 357df311e6cSXuan Zhou C->assembled = PETSC_TRUE; 358df311e6cSXuan Zhou PetscFunctionReturn(0); 359df311e6cSXuan Zhou } 360df311e6cSXuan Zhou 361df311e6cSXuan Zhou #undef __FUNCT__ 362df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 363df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 364df311e6cSXuan Zhou { 365df311e6cSXuan Zhou PetscErrorCode ierr; 366df311e6cSXuan Zhou Mat Ce; 367df311e6cSXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 368df311e6cSXuan Zhou 369df311e6cSXuan Zhou PetscFunctionBegin; 370df311e6cSXuan Zhou ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 371df311e6cSXuan Zhou ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 372df311e6cSXuan Zhou ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 373df311e6cSXuan Zhou ierr = MatSetUp(Ce);CHKERRQ(ierr); 374df311e6cSXuan Zhou *C = Ce; 375df311e6cSXuan Zhou PetscFunctionReturn(0); 376df311e6cSXuan Zhou } 377df311e6cSXuan Zhou 378df311e6cSXuan Zhou #undef __FUNCT__ 379df311e6cSXuan Zhou #define __FUNCT__ "MatMatTransposeMult_Elemental" 380df311e6cSXuan Zhou static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 381df311e6cSXuan Zhou { 382df311e6cSXuan Zhou PetscErrorCode ierr; 383df311e6cSXuan Zhou 384df311e6cSXuan Zhou PetscFunctionBegin; 385df311e6cSXuan Zhou if (scall == MAT_INITIAL_MATRIX){ 386df311e6cSXuan Zhou ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 387df311e6cSXuan Zhou ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 388df311e6cSXuan Zhou ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 389df311e6cSXuan Zhou } 390df311e6cSXuan Zhou ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 391df311e6cSXuan Zhou ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 392df311e6cSXuan Zhou ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 393df311e6cSXuan Zhou PetscFunctionReturn(0); 394df311e6cSXuan Zhou } 395df311e6cSXuan Zhou 396df311e6cSXuan Zhou #undef __FUNCT__ 3974ee44ac6SXuan Zhou #define __FUNCT__ "MatScale_Elemental" 398e6dea9dbSXuan Zhou static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 39965b78793SXuan Zhou { 40065b78793SXuan Zhou Mat_Elemental *x = (Mat_Elemental*)X->data; 40165b78793SXuan Zhou 40265b78793SXuan Zhou PetscFunctionBegin; 403e6dea9dbSXuan Zhou elem::Scal((PetscElemScalar)a,*x->emat); 40465b78793SXuan Zhou PetscFunctionReturn(0); 40565b78793SXuan Zhou } 40665b78793SXuan Zhou 40765b78793SXuan Zhou #undef __FUNCT__ 4084ee44ac6SXuan Zhou #define __FUNCT__ "MatAXPY_Elemental" 409e6dea9dbSXuan Zhou static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 410e09a3074SHong Zhang { 411e09a3074SHong Zhang Mat_Elemental *x = (Mat_Elemental*)X->data; 412e09a3074SHong Zhang Mat_Elemental *y = (Mat_Elemental*)Y->data; 413e09a3074SHong Zhang 414e09a3074SHong Zhang PetscFunctionBegin; 415e6dea9dbSXuan Zhou elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 416e09a3074SHong Zhang PetscFunctionReturn(0); 417e09a3074SHong Zhang } 418e09a3074SHong Zhang 419ae844d54SHong Zhang #undef __FUNCT__ 420d6223691SXuan Zhou #define __FUNCT__ "MatCopy_Elemental" 421d6223691SXuan Zhou static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 422d6223691SXuan Zhou { 423d6223691SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 424d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 425d6223691SXuan Zhou 426d6223691SXuan Zhou PetscFunctionBegin; 427d6223691SXuan Zhou elem::Copy(*a->emat,*b->emat); 428d6223691SXuan Zhou PetscFunctionReturn(0); 429d6223691SXuan Zhou } 430d6223691SXuan Zhou 431d6223691SXuan Zhou #undef __FUNCT__ 432df311e6cSXuan Zhou #define __FUNCT__ "MatDuplicate_Elemental" 433df311e6cSXuan Zhou static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 434df311e6cSXuan Zhou { 435df311e6cSXuan Zhou Mat Be; 436df311e6cSXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 437df311e6cSXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 438df311e6cSXuan Zhou PetscErrorCode ierr; 439df311e6cSXuan Zhou 440df311e6cSXuan Zhou PetscFunctionBegin; 441df311e6cSXuan Zhou ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 442df311e6cSXuan Zhou ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 443df311e6cSXuan Zhou ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 444df311e6cSXuan Zhou ierr = MatSetUp(Be);CHKERRQ(ierr); 445df311e6cSXuan Zhou *B = Be; 446df311e6cSXuan Zhou if (op == MAT_COPY_VALUES) { 447df311e6cSXuan Zhou Mat_Elemental *b=(Mat_Elemental*)Be->data; 448df311e6cSXuan Zhou elem::Copy(*a->emat,*b->emat); 449df311e6cSXuan Zhou } 450df311e6cSXuan Zhou Be->assembled = PETSC_TRUE; 451df311e6cSXuan Zhou PetscFunctionReturn(0); 452df311e6cSXuan Zhou } 453df311e6cSXuan Zhou 454df311e6cSXuan Zhou #undef __FUNCT__ 455d6223691SXuan Zhou #define __FUNCT__ "MatTranspose_Elemental" 456d6223691SXuan Zhou static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 457d6223691SXuan Zhou { 4583512f328SXuan Zhou /* Only out-of-place supported */ 4595262d616SXuan Zhou Mat Be; 4605262d616SXuan Zhou PetscErrorCode ierr; 4615262d616SXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 4624fe7bbcaSHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 463d6223691SXuan Zhou 464d6223691SXuan Zhou PetscFunctionBegin; 4655262d616SXuan Zhou if (reuse == MAT_INITIAL_MATRIX){ 4665262d616SXuan Zhou ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 4675262d616SXuan Zhou ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 4685262d616SXuan Zhou ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 4695262d616SXuan Zhou ierr = MatSetUp(Be);CHKERRQ(ierr); 4705262d616SXuan Zhou *B = Be; 4715262d616SXuan Zhou } 4724fe7bbcaSHong Zhang b = (Mat_Elemental*)Be->data; 4735262d616SXuan Zhou elem::Transpose(*a->emat,*b->emat); 4745262d616SXuan Zhou Be->assembled = PETSC_TRUE; 475d6223691SXuan Zhou PetscFunctionReturn(0); 476d6223691SXuan Zhou } 477d6223691SXuan Zhou 478d6223691SXuan Zhou #undef __FUNCT__ 479*dfcb0403SXuan Zhou #define __FUNCT__ "MatConjugate_Elemental" 480*dfcb0403SXuan Zhou static PetscErrorCode MatConjugate_Elemental(Mat A) 481*dfcb0403SXuan Zhou { 482*dfcb0403SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 483*dfcb0403SXuan Zhou 484*dfcb0403SXuan Zhou PetscFunctionBegin; 485*dfcb0403SXuan Zhou elem::Conjugate(*a->emat); 486*dfcb0403SXuan Zhou PetscFunctionReturn(0); 487*dfcb0403SXuan Zhou } 488*dfcb0403SXuan Zhou 489*dfcb0403SXuan Zhou #undef __FUNCT__ 4901f881ff8SXuan Zhou #define __FUNCT__ "MatSolve_Elemental" 4911f881ff8SXuan Zhou static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 4921f881ff8SXuan Zhou { 4931f881ff8SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 4941f881ff8SXuan Zhou PetscErrorCode ierr; 495df311e6cSXuan Zhou PetscElemScalar *x; 4961f881ff8SXuan Zhou 4971f881ff8SXuan Zhou PetscFunctionBegin; 49845cf121fSXuan Zhou ierr = VecCopy(B,X);CHKERRQ(ierr); 499e6dea9dbSXuan Zhou ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 500df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 501df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 502fc54b460SXuan Zhou switch (A->factortype) { 503fc54b460SXuan Zhou case MAT_FACTOR_LU: 5041f881ff8SXuan Zhou if ((*a->pivot).AllocatedMemory()) { 5054b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 50645cf121fSXuan Zhou elem::Copy(xer,xe); 507fc54b460SXuan Zhou } else { 5084b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 50945cf121fSXuan Zhou elem::Copy(xer,xe); 5101f881ff8SXuan Zhou } 511fc54b460SXuan Zhou break; 512fc54b460SXuan Zhou case MAT_FACTOR_CHOLESKY: 513fc54b460SXuan Zhou elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 514fc54b460SXuan Zhou elem::Copy(xer,xe); 515fc54b460SXuan Zhou break; 516fc54b460SXuan Zhou default: 5174fe7bbcaSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 518fc54b460SXuan Zhou break; 5191f881ff8SXuan Zhou } 520e6dea9dbSXuan Zhou ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 5211f881ff8SXuan Zhou PetscFunctionReturn(0); 5221f881ff8SXuan Zhou } 5231f881ff8SXuan Zhou 5241f881ff8SXuan Zhou #undef __FUNCT__ 525df311e6cSXuan Zhou #define __FUNCT__ "MatSolveAdd_Elemental" 526df311e6cSXuan Zhou static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 527df311e6cSXuan Zhou { 528df311e6cSXuan Zhou PetscErrorCode ierr; 529df311e6cSXuan Zhou 530df311e6cSXuan Zhou PetscFunctionBegin; 531df311e6cSXuan Zhou ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 5323d7f40dbSXuan Zhou ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 533df311e6cSXuan Zhou PetscFunctionReturn(0); 534df311e6cSXuan Zhou } 535df311e6cSXuan Zhou 536df311e6cSXuan Zhou #undef __FUNCT__ 537ae844d54SHong Zhang #define __FUNCT__ "MatMatSolve_Elemental" 538ae844d54SHong Zhang static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 539ae844d54SHong Zhang { 5401f0e42cfSHong Zhang Mat_Elemental *a=(Mat_Elemental*)A->data; 541d6223691SXuan Zhou Mat_Elemental *b=(Mat_Elemental*)B->data; 5421f0e42cfSHong Zhang Mat_Elemental *x=(Mat_Elemental*)X->data; 5431f0e42cfSHong Zhang 544ae844d54SHong Zhang PetscFunctionBegin; 545d6223691SXuan Zhou elem::Copy(*b->emat,*x->emat); 546fc54b460SXuan Zhou switch (A->factortype) { 547fc54b460SXuan Zhou case MAT_FACTOR_LU: 548d6223691SXuan Zhou if ((*a->pivot).AllocatedMemory()) { 5494b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 550fc54b460SXuan Zhou } else { 5514b28e8e8SXuan Zhou elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 552d6223691SXuan Zhou } 553fc54b460SXuan Zhou break; 554fc54b460SXuan Zhou case MAT_FACTOR_CHOLESKY: 555fc54b460SXuan Zhou elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 556fc54b460SXuan Zhou break; 557fc54b460SXuan Zhou default: 5584fe7bbcaSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 559fc54b460SXuan Zhou break; 560fc54b460SXuan Zhou } 561ae844d54SHong Zhang PetscFunctionReturn(0); 562ae844d54SHong Zhang } 563ae844d54SHong Zhang 564ae844d54SHong Zhang #undef __FUNCT__ 565ae844d54SHong Zhang #define __FUNCT__ "MatLUFactor_Elemental" 566ae844d54SHong Zhang static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 567ae844d54SHong Zhang { 5687c920d81SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 5697c920d81SXuan Zhou 570ae844d54SHong Zhang PetscFunctionBegin; 571d6223691SXuan Zhou if (info->dtcol){ 5727c920d81SXuan Zhou elem::LU(*a->emat,*a->pivot); 5731293973dSHong Zhang } else { 574d6223691SXuan Zhou elem::LU(*a->emat); 575d6223691SXuan Zhou } 5761293973dSHong Zhang A->factortype = MAT_FACTOR_LU; 577834d3fecSHong Zhang A->assembled = PETSC_TRUE; 578ae844d54SHong Zhang PetscFunctionReturn(0); 579ae844d54SHong Zhang } 580ae844d54SHong Zhang 581d7c3f9d8SHong Zhang #undef __FUNCT__ 582d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorNumeric_Elemental" 583d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 584d7c3f9d8SHong Zhang { 585d7c3f9d8SHong Zhang PetscErrorCode ierr; 586d7c3f9d8SHong Zhang 587d7c3f9d8SHong Zhang PetscFunctionBegin; 588d7c3f9d8SHong Zhang ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 589d7c3f9d8SHong Zhang ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 590d7c3f9d8SHong Zhang PetscFunctionReturn(0); 591d7c3f9d8SHong Zhang } 592d7c3f9d8SHong Zhang 593d7c3f9d8SHong Zhang #undef __FUNCT__ 594d7c3f9d8SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 595d7c3f9d8SHong Zhang static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 596d7c3f9d8SHong Zhang { 597d7c3f9d8SHong Zhang PetscFunctionBegin; 598d7c3f9d8SHong Zhang /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 599d7c3f9d8SHong Zhang PetscFunctionReturn(0); 600d7c3f9d8SHong Zhang } 601d7c3f9d8SHong Zhang 60245cf121fSXuan Zhou #undef __FUNCT__ 60345cf121fSXuan Zhou #define __FUNCT__ "MatCholeskyFactor_Elemental" 60445cf121fSXuan Zhou static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 60545cf121fSXuan Zhou { 60645cf121fSXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 607df311e6cSXuan Zhou elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 60845cf121fSXuan Zhou 60945cf121fSXuan Zhou PetscFunctionBegin; 610c9fc186eSXuan Zhou elem::Cholesky(elem::UPPER,*a->emat); 611fc54b460SXuan Zhou A->factortype = MAT_FACTOR_CHOLESKY; 612834d3fecSHong Zhang A->assembled = PETSC_TRUE; 61345cf121fSXuan Zhou PetscFunctionReturn(0); 61445cf121fSXuan Zhou } 61545cf121fSXuan Zhou 61679673f7bSHong Zhang #undef __FUNCT__ 61779673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 61879673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 61979673f7bSHong Zhang { 620cb76c1d8SXuan Zhou PetscErrorCode ierr; 621cb76c1d8SXuan Zhou 622cb76c1d8SXuan Zhou PetscFunctionBegin; 623cb76c1d8SXuan Zhou ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 624cb76c1d8SXuan Zhou ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 625cb76c1d8SXuan Zhou PetscFunctionReturn(0); 62679673f7bSHong Zhang } 627cb76c1d8SXuan Zhou 62879673f7bSHong Zhang #undef __FUNCT__ 62979673f7bSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 63079673f7bSHong Zhang static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 63179673f7bSHong Zhang { 63279673f7bSHong Zhang PetscFunctionBegin; 63379673f7bSHong Zhang /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 63479673f7bSHong Zhang PetscFunctionReturn(0); 63579673f7bSHong Zhang } 63679673f7bSHong Zhang 63715767789SHong Zhang EXTERN_C_BEGIN 6381293973dSHong Zhang #undef __FUNCT__ 63915767789SHong Zhang #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 64015767789SHong Zhang PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 64115767789SHong Zhang { 64215767789SHong Zhang PetscFunctionBegin; 64315767789SHong Zhang *type = MATSOLVERELEMENTAL; 64415767789SHong Zhang PetscFunctionReturn(0); 64515767789SHong Zhang } 64615767789SHong Zhang EXTERN_C_END 64715767789SHong Zhang 64815767789SHong Zhang EXTERN_C_BEGIN 64915767789SHong Zhang #undef __FUNCT__ 65015767789SHong Zhang #define __FUNCT__ "MatGetFactor_elemental_elemental" 65115767789SHong Zhang static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 6521293973dSHong Zhang { 6531293973dSHong Zhang Mat B; 6541293973dSHong Zhang PetscErrorCode ierr; 6551293973dSHong Zhang 6561293973dSHong Zhang PetscFunctionBegin; 6571293973dSHong Zhang /* Create the factorization matrix */ 6581293973dSHong Zhang ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 6591293973dSHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 6601293973dSHong Zhang ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 6611293973dSHong Zhang ierr = MatSetUp(B);CHKERRQ(ierr); 6621293973dSHong Zhang B->factortype = ftype; 66315767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 6641293973dSHong Zhang *F = B; 6651293973dSHong Zhang PetscFunctionReturn(0); 6661293973dSHong Zhang } 66715767789SHong Zhang EXTERN_C_END 6681293973dSHong Zhang 6691f881ff8SXuan Zhou #undef __FUNCT__ 6701f881ff8SXuan Zhou #define __FUNCT__ "MatNorm_Elemental" 6711f881ff8SXuan Zhou static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 6721f881ff8SXuan Zhou { 6731f881ff8SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 6741f881ff8SXuan Zhou 6751f881ff8SXuan Zhou PetscFunctionBegin; 6761f881ff8SXuan Zhou switch (type){ 6771f881ff8SXuan Zhou case NORM_1: 6781f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 6791f881ff8SXuan Zhou break; 6801f881ff8SXuan Zhou case NORM_FROBENIUS: 6811f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 6821f881ff8SXuan Zhou break; 6831f881ff8SXuan Zhou case NORM_INFINITY: 6841f881ff8SXuan Zhou *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 6851f881ff8SXuan Zhou break; 6861f881ff8SXuan Zhou default: 6871f881ff8SXuan Zhou printf("Error: unsupported norm type!\n"); 6881f881ff8SXuan Zhou } 6891f881ff8SXuan Zhou PetscFunctionReturn(0); 6901f881ff8SXuan Zhou } 6911f881ff8SXuan Zhou 6925262d616SXuan Zhou #undef __FUNCT__ 6935262d616SXuan Zhou #define __FUNCT__ "MatZeroEntries_Elemental" 6945262d616SXuan Zhou static PetscErrorCode MatZeroEntries_Elemental(Mat A) 6955262d616SXuan Zhou { 6965262d616SXuan Zhou Mat_Elemental *a=(Mat_Elemental*)A->data; 6975262d616SXuan Zhou 6985262d616SXuan Zhou PetscFunctionBegin; 6995262d616SXuan Zhou elem::Zero(*a->emat); 7005262d616SXuan Zhou PetscFunctionReturn(0); 7015262d616SXuan Zhou } 7025262d616SXuan Zhou 7031293973dSHong Zhang EXTERN_C_BEGIN 704e09a3074SHong Zhang #undef __FUNCT__ 705db31f6deSJed Brown #define __FUNCT__ "MatGetOwnershipIS_Elemental" 706db31f6deSJed Brown static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 707db31f6deSJed Brown { 708db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 709db31f6deSJed Brown PetscErrorCode ierr; 710db31f6deSJed Brown PetscInt i,m,shift,stride,*idx; 711db31f6deSJed Brown 712db31f6deSJed Brown PetscFunctionBegin; 713db31f6deSJed Brown if (rows) { 714db31f6deSJed Brown m = a->emat->LocalHeight(); 715db31f6deSJed Brown shift = a->emat->ColShift(); 716db31f6deSJed Brown stride = a->emat->ColStride(); 717db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 718db31f6deSJed Brown for (i=0; i<m; i++) { 719db31f6deSJed Brown PetscInt rank,offset; 720db31f6deSJed Brown E2RO(A,0,shift+i*stride,&rank,&offset); 721db31f6deSJed Brown RO2P(A,0,rank,offset,&idx[i]); 722db31f6deSJed Brown } 723db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 724db31f6deSJed Brown } 725db31f6deSJed Brown if (cols) { 726db31f6deSJed Brown m = a->emat->LocalWidth(); 727db31f6deSJed Brown shift = a->emat->RowShift(); 728db31f6deSJed Brown stride = a->emat->RowStride(); 729db31f6deSJed Brown ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 730db31f6deSJed Brown for (i=0; i<m; i++) { 731db31f6deSJed Brown PetscInt rank,offset; 732db31f6deSJed Brown E2RO(A,1,shift+i*stride,&rank,&offset); 733db31f6deSJed Brown RO2P(A,1,rank,offset,&idx[i]); 734db31f6deSJed Brown } 735db31f6deSJed Brown ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 736db31f6deSJed Brown } 737db31f6deSJed Brown PetscFunctionReturn(0); 738db31f6deSJed Brown } 7391293973dSHong Zhang EXTERN_C_END 740db31f6deSJed Brown 741db31f6deSJed Brown #undef __FUNCT__ 7422ef0cf24SXuan Zhou #define __FUNCT__ "MatConvert_Elemental_Dense" 7432ef0cf24SXuan Zhou static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B) 744af295397SXuan Zhou { 7452ef0cf24SXuan Zhou Mat Bmpi; 746af295397SXuan Zhou Mat_Elemental *a = (Mat_Elemental*)A->data; 747af295397SXuan Zhou MPI_Comm comm=((PetscObject)A)->comm; 7482ef0cf24SXuan Zhou PetscErrorCode ierr; 7492ef0cf24SXuan Zhou PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 750df311e6cSXuan Zhou PetscElemScalar v; 751af295397SXuan Zhou 752af295397SXuan Zhou PetscFunctionBegin; 753c4ad791aSXuan Zhou if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 754c4ad791aSXuan Zhou SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 755c4ad791aSXuan Zhou } 756af295397SXuan Zhou ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 757af295397SXuan Zhou ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 7582ef0cf24SXuan Zhou ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 759af295397SXuan Zhou ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 7602ef0cf24SXuan Zhou ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 7612ef0cf24SXuan Zhou for (i=0; i<nrows; i++) { 7622ef0cf24SXuan Zhou PetscInt erow,ecol; 7632ef0cf24SXuan Zhou P2RO(A,0,i,&rrank,&ridx); 7642ef0cf24SXuan Zhou RO2E(A,0,rrank,ridx,&erow); 7652ef0cf24SXuan Zhou if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 7662ef0cf24SXuan Zhou for (j=0; j<ncols; j++) { 7672ef0cf24SXuan Zhou P2RO(A,1,j,&crank,&cidx); 7682ef0cf24SXuan Zhou RO2E(A,1,crank,cidx,&ecol); 7692ef0cf24SXuan Zhou if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 7702ef0cf24SXuan Zhou v = a->emat->Get(erow,ecol); 771e6dea9dbSXuan Zhou ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 7722ef0cf24SXuan Zhou } 7732ef0cf24SXuan Zhou } 774af295397SXuan Zhou ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775af295397SXuan Zhou ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 776c4ad791aSXuan Zhou if (reuse == MAT_REUSE_MATRIX) { 777c4ad791aSXuan Zhou ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 778c4ad791aSXuan Zhou } else { 779c4ad791aSXuan Zhou *B = Bmpi; 780c4ad791aSXuan Zhou } 781af295397SXuan Zhou PetscFunctionReturn(0); 782af295397SXuan Zhou } 783af295397SXuan Zhou 784af295397SXuan Zhou #undef __FUNCT__ 785db31f6deSJed Brown #define __FUNCT__ "MatDestroy_Elemental" 786db31f6deSJed Brown static PetscErrorCode MatDestroy_Elemental(Mat A) 787db31f6deSJed Brown { 788db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 789db31f6deSJed Brown PetscErrorCode ierr; 7905e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 7915e9f5b67SHong Zhang PetscBool flg; 7925e9f5b67SHong Zhang MPI_Comm icomm; 793db31f6deSJed Brown 794db31f6deSJed Brown PetscFunctionBegin; 795c1ee1e62SHong Zhang a->interface->Detach(); 796aae2c449SHong Zhang delete a->interface; 797aae2c449SHong Zhang delete a->esubmat; 798db31f6deSJed Brown delete a->emat; 7995e9f5b67SHong Zhang 800180a43e4SHong Zhang elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 8015e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 8025e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 8035e9f5b67SHong Zhang if (--commgrid->grid_refct == 0) { 8045e9f5b67SHong Zhang delete commgrid->grid; 8055e9f5b67SHong Zhang ierr = PetscFree(commgrid);CHKERRQ(ierr); 8065e9f5b67SHong Zhang } 8075e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 808db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 8091293973dSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 81015767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 811db31f6deSJed Brown ierr = PetscFree(A->data);CHKERRQ(ierr); 812db31f6deSJed Brown PetscFunctionReturn(0); 813db31f6deSJed Brown } 814db31f6deSJed Brown 815db31f6deSJed Brown #undef __FUNCT__ 816db31f6deSJed Brown #define __FUNCT__ "MatSetUp_Elemental" 817db31f6deSJed Brown PetscErrorCode MatSetUp_Elemental(Mat A) 818db31f6deSJed Brown { 819db31f6deSJed Brown Mat_Elemental *a = (Mat_Elemental*)A->data; 820db31f6deSJed Brown PetscErrorCode ierr; 821db31f6deSJed Brown PetscMPIInt rsize,csize; 822db31f6deSJed Brown 823db31f6deSJed Brown PetscFunctionBegin; 824db31f6deSJed Brown ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 825db31f6deSJed Brown ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 826db31f6deSJed Brown 827db31f6deSJed Brown a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 828db31f6deSJed Brown elem::Zero(*a->emat); 829db31f6deSJed Brown 830db31f6deSJed Brown ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 831db31f6deSJed Brown ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 832db31f6deSJed Brown if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 833db31f6deSJed Brown a->commsize = rsize; 834db31f6deSJed Brown a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 835db31f6deSJed Brown a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 836db31f6deSJed Brown a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 837db31f6deSJed Brown a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 838db31f6deSJed Brown PetscFunctionReturn(0); 839db31f6deSJed Brown } 840db31f6deSJed Brown 841aae2c449SHong Zhang #undef __FUNCT__ 842aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyBegin_Elemental" 843aae2c449SHong Zhang PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 844aae2c449SHong Zhang { 845aae2c449SHong Zhang Mat_Elemental *a = (Mat_Elemental*)A->data; 846aae2c449SHong Zhang 847aae2c449SHong Zhang PetscFunctionBegin; 848aae2c449SHong Zhang a->interface->Detach(); 849aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 850aae2c449SHong Zhang PetscFunctionReturn(0); 851aae2c449SHong Zhang } 852aae2c449SHong Zhang 853aae2c449SHong Zhang #undef __FUNCT__ 854aae2c449SHong Zhang #define __FUNCT__ "MatAssemblyEnd_Elemental" 855aae2c449SHong Zhang PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 856aae2c449SHong Zhang { 857aae2c449SHong Zhang PetscFunctionBegin; 858aae2c449SHong Zhang /* Currently does nothing */ 859aae2c449SHong Zhang PetscFunctionReturn(0); 860aae2c449SHong Zhang } 861aae2c449SHong Zhang 86240d92e34SHong Zhang /* -------------------------------------------------------------------*/ 86340d92e34SHong Zhang static struct _MatOps MatOps_Values = { 86440d92e34SHong Zhang MatSetValues_Elemental, 86540d92e34SHong Zhang 0, 86640d92e34SHong Zhang 0, 86740d92e34SHong Zhang MatMult_Elemental, 86840d92e34SHong Zhang /* 4*/ MatMultAdd_Elemental, 8699426833fSXuan Zhou MatMultTranspose_Elemental, 870e883f9d5SXuan Zhou MatMultTransposeAdd_Elemental, 87140d92e34SHong Zhang MatSolve_Elemental, 872df311e6cSXuan Zhou MatSolveAdd_Elemental, 87340d92e34SHong Zhang 0, //MatSolveTranspose_Elemental, 87440d92e34SHong Zhang /*10*/ 0, //MatSolveTransposeAdd_Elemental, 87540d92e34SHong Zhang MatLUFactor_Elemental, 87640d92e34SHong Zhang MatCholeskyFactor_Elemental, 87740d92e34SHong Zhang 0, 87840d92e34SHong Zhang MatTranspose_Elemental, 87940d92e34SHong Zhang /*15*/ MatGetInfo_Elemental, 88040d92e34SHong Zhang 0, 88140d92e34SHong Zhang 0, 88240d92e34SHong Zhang 0, 88340d92e34SHong Zhang MatNorm_Elemental, 88440d92e34SHong Zhang /*20*/ MatAssemblyBegin_Elemental, 88540d92e34SHong Zhang MatAssemblyEnd_Elemental, 88640d92e34SHong Zhang 0, //MatSetOption_Elemental, 88740d92e34SHong Zhang MatZeroEntries_Elemental, 88840d92e34SHong Zhang /*24*/ 0, 88940d92e34SHong Zhang MatLUFactorSymbolic_Elemental, 89040d92e34SHong Zhang MatLUFactorNumeric_Elemental, 89140d92e34SHong Zhang MatCholeskyFactorSymbolic_Elemental, 89240d92e34SHong Zhang MatCholeskyFactorNumeric_Elemental, 89340d92e34SHong Zhang /*29*/ MatSetUp_Elemental, 89440d92e34SHong Zhang 0, 89540d92e34SHong Zhang 0, 89640d92e34SHong Zhang 0, 89740d92e34SHong Zhang 0, 898df311e6cSXuan Zhou /*34*/ MatDuplicate_Elemental, 89940d92e34SHong Zhang 0, 90040d92e34SHong Zhang 0, 90140d92e34SHong Zhang 0, 90240d92e34SHong Zhang 0, 90340d92e34SHong Zhang /*39*/ MatAXPY_Elemental, 90440d92e34SHong Zhang 0, 90540d92e34SHong Zhang 0, 90640d92e34SHong Zhang 0, 90740d92e34SHong Zhang MatCopy_Elemental, 90840d92e34SHong Zhang /*44*/ 0, 90940d92e34SHong Zhang MatScale_Elemental, 91040d92e34SHong Zhang 0, 91140d92e34SHong Zhang 0, 91240d92e34SHong Zhang 0, 91340d92e34SHong Zhang /*49*/ 0, 91440d92e34SHong Zhang 0, 91540d92e34SHong Zhang 0, 91640d92e34SHong Zhang 0, 91740d92e34SHong Zhang 0, 91840d92e34SHong Zhang /*54*/ 0, 91940d92e34SHong Zhang 0, 92040d92e34SHong Zhang 0, 92140d92e34SHong Zhang 0, 92240d92e34SHong Zhang 0, 92340d92e34SHong Zhang /*59*/ 0, 92440d92e34SHong Zhang MatDestroy_Elemental, 92540d92e34SHong Zhang MatView_Elemental, 92640d92e34SHong Zhang 0, 92740d92e34SHong Zhang 0, 92840d92e34SHong Zhang /*64*/ 0, 92940d92e34SHong Zhang 0, 93040d92e34SHong Zhang 0, 93140d92e34SHong Zhang 0, 93240d92e34SHong Zhang 0, 93340d92e34SHong Zhang /*69*/ 0, 93440d92e34SHong Zhang 0, 9352ef0cf24SXuan Zhou MatConvert_Elemental_Dense, 93640d92e34SHong Zhang 0, 93740d92e34SHong Zhang 0, 93840d92e34SHong Zhang /*74*/ 0, 93940d92e34SHong Zhang 0, 94040d92e34SHong Zhang 0, 94140d92e34SHong Zhang 0, 94240d92e34SHong Zhang 0, 94340d92e34SHong Zhang /*79*/ 0, 94440d92e34SHong Zhang 0, 94540d92e34SHong Zhang 0, 94640d92e34SHong Zhang 0, 94740d92e34SHong Zhang 0, 94840d92e34SHong Zhang /*84*/ 0, 94940d92e34SHong Zhang 0, 95040d92e34SHong Zhang 0, 95140d92e34SHong Zhang 0, 95240d92e34SHong Zhang 0, 95340d92e34SHong Zhang /*89*/ MatMatMult_Elemental, 95440d92e34SHong Zhang MatMatMultSymbolic_Elemental, 95540d92e34SHong Zhang MatMatMultNumeric_Elemental, 95640d92e34SHong Zhang 0, 95740d92e34SHong Zhang 0, 95840d92e34SHong Zhang /*94*/ 0, 959df311e6cSXuan Zhou MatMatTransposeMult_Elemental, 960df311e6cSXuan Zhou MatMatTransposeMultSymbolic_Elemental, 961df311e6cSXuan Zhou MatMatTransposeMultNumeric_Elemental, 96240d92e34SHong Zhang 0, 96340d92e34SHong Zhang /*99*/ 0, 96440d92e34SHong Zhang 0, 96540d92e34SHong Zhang 0, 966*dfcb0403SXuan Zhou MatConjugate_Elemental, 96740d92e34SHong Zhang 0, 96840d92e34SHong Zhang /*104*/0, 96940d92e34SHong Zhang 0, 97040d92e34SHong Zhang 0, 97140d92e34SHong Zhang 0, 97240d92e34SHong Zhang 0, 97340d92e34SHong Zhang /*109*/MatMatSolve_Elemental, 97440d92e34SHong Zhang 0, 97540d92e34SHong Zhang 0, 97640d92e34SHong Zhang 0, 97740d92e34SHong Zhang 0, 97840d92e34SHong Zhang /*114*/0, 97940d92e34SHong Zhang 0, 98040d92e34SHong Zhang 0, 98140d92e34SHong Zhang 0, 98240d92e34SHong Zhang 0, 98340d92e34SHong Zhang /*119*/0, 98440d92e34SHong Zhang 0, 98540d92e34SHong Zhang 0, 98640d92e34SHong Zhang 0, 98740d92e34SHong Zhang 0, 98840d92e34SHong Zhang /*124*/0, 98940d92e34SHong Zhang 0, 99040d92e34SHong Zhang 0, 99140d92e34SHong Zhang 0, 99240d92e34SHong Zhang 0, 99340d92e34SHong Zhang /*129*/0, 99440d92e34SHong Zhang 0, 99540d92e34SHong Zhang 0, 99640d92e34SHong Zhang 0, 99740d92e34SHong Zhang 0, 99840d92e34SHong Zhang /*134*/0, 99940d92e34SHong Zhang 0, 100040d92e34SHong Zhang 0, 100140d92e34SHong Zhang 0, 100240d92e34SHong Zhang 0 100340d92e34SHong Zhang }; 100440d92e34SHong Zhang 1005ed36708cSHong Zhang /*MC 1006ed36708cSHong Zhang MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1007ed36708cSHong Zhang 1008ed36708cSHong Zhang Options Database Keys: 1009ed36708cSHong Zhang . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1010ed36708cSHong Zhang 1011ed36708cSHong Zhang Level: beginner 1012ed36708cSHong Zhang 1013ed36708cSHong Zhang .seealso: MATDENSE,MatCreateElemental() 1014ed36708cSHong Zhang M*/ 1015ed36708cSHong Zhang EXTERN_C_BEGIN 1016db31f6deSJed Brown #undef __FUNCT__ 1017db31f6deSJed Brown #define __FUNCT__ "MatCreate_Elemental" 1018db31f6deSJed Brown PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1019db31f6deSJed Brown { 1020db31f6deSJed Brown Mat_Elemental *a; 1021db31f6deSJed Brown PetscErrorCode ierr; 1022ed667823SXuan Zhou PetscBool flg,flg1,flg2; 10235e9f5b67SHong Zhang Mat_Elemental_Grid *commgrid; 10245e9f5b67SHong Zhang MPI_Comm icomm; 1025ed667823SXuan Zhou PetscInt optv1,optv2; 1026db31f6deSJed Brown 1027db31f6deSJed Brown PetscFunctionBegin; 1028db31f6deSJed Brown ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 102940d92e34SHong Zhang ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 103040d92e34SHong Zhang A->insertmode = NOT_SET_VALUES; 1031db31f6deSJed Brown 1032db31f6deSJed Brown ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1033db31f6deSJed Brown A->data = (void*)a; 1034db31f6deSJed Brown 1035db31f6deSJed Brown /* Set up the elemental matrix */ 1036db31f6deSJed Brown elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1037ed667823SXuan Zhou ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 10385e9f5b67SHong Zhang 10395e9f5b67SHong Zhang /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 10405e9f5b67SHong Zhang if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1041180a43e4SHong Zhang ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 10425e9f5b67SHong Zhang } 10435e9f5b67SHong Zhang ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 10445e9f5b67SHong Zhang ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 10455e9f5b67SHong Zhang if (!flg) { 10465e9f5b67SHong Zhang ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 10472ef0cf24SXuan Zhou ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 10482ef0cf24SXuan Zhou ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1049ed667823SXuan Zhou if (flg1 || flg2) { 1050ed667823SXuan Zhou if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 10512ef0cf24SXuan Zhou SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1052ed667823SXuan Zhou } 1053ed667823SXuan Zhou commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); 10542ef0cf24SXuan Zhou } else { 10552ef0cf24SXuan Zhou commgrid->grid = new elem::Grid(cxxcomm); 1056ed667823SXuan Zhou } 10575e9f5b67SHong Zhang commgrid->grid_refct = 1; 10585e9f5b67SHong Zhang ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 10595e9f5b67SHong Zhang } else { 10605e9f5b67SHong Zhang commgrid->grid_refct++; 10615e9f5b67SHong Zhang } 10625e9f5b67SHong Zhang ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 10635e9f5b67SHong Zhang a->grid = commgrid->grid; 1064df311e6cSXuan Zhou a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1065df311e6cSXuan Zhou a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1066df311e6cSXuan Zhou a->interface = new elem::AxpyInterface<PetscElemScalar>; 10677c920d81SXuan Zhou a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1068db31f6deSJed Brown 1069db31f6deSJed Brown /* build cache for off array entries formed */ 1070aae2c449SHong Zhang a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1071bafd5131SHong Zhang 1072db31f6deSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 107315767789SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1074db31f6deSJed Brown 1075db31f6deSJed Brown ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1076ed667823SXuan Zhou PetscOptionsEnd(); 1077db31f6deSJed Brown PetscFunctionReturn(0); 1078db31f6deSJed Brown } 1079ed36708cSHong Zhang EXTERN_C_END 1080