1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 #undef __FUNCT__ 58 #define __FUNCT__ "MatView_Elemental" 59 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60 { 61 PetscErrorCode ierr; 62 Mat_Elemental *a = (Mat_Elemental*)A->data; 63 PetscBool iascii; 64 65 PetscFunctionBegin; 66 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67 if (iascii) { 68 PetscViewerFormat format; 69 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70 if (format == PETSC_VIEWER_ASCII_INFO) { 71 SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Info viewer not implemented yet"); 72 } else if (format == PETSC_VIEWER_DEFAULT) { 73 Mat Aaij; 74 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 75 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 76 a->emat->Print("Elemental matrix (cyclic ordering)"); 77 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 78 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 79 ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 80 ierr = MatView(Aaij,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 81 ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 82 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 83 } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by Elemental matrices",((PetscObject)viewer)->type_name); 84 PetscFunctionReturn(0); 85 } 86 87 #undef __FUNCT__ 88 #define __FUNCT__ "MatSetValues_Elemental" 89 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 90 { 91 PetscErrorCode ierr; 92 Mat_Elemental *a = (Mat_Elemental*)A->data; 93 PetscMPIInt rank; 94 PetscInt i,j,rrank,ridx,crank,cidx; 95 96 PetscFunctionBegin; 97 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 98 99 const elem::Grid &grid = a->emat->Grid(); 100 for (i=0; i<nr; i++) { 101 PetscInt erow,ecol,elrow,elcol; 102 if (rows[i] < 0) continue; 103 P2RO(A,0,rows[i],&rrank,&ridx); 104 RO2E(A,0,rrank,ridx,&erow); 105 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 106 for (j=0; j<nc; j++) { 107 if (cols[j] < 0) continue; 108 P2RO(A,1,cols[j],&crank,&cidx); 109 RO2E(A,1,crank,cidx,&ecol); 110 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 111 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 112 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 113 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 114 a->esubmat->Set(0,0, vals[i*nc+j]); 115 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 116 continue; 117 } 118 elrow = erow / grid.MCSize(); 119 elcol = ecol / grid.MRSize(); 120 switch (imode) { 121 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,vals[i*nc+j]); break; 122 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,vals[i*nc+j]); break; 123 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 124 } 125 } 126 } 127 PetscFunctionReturn(0); 128 } 129 130 #undef __FUNCT__ 131 #define __FUNCT__ "MatMult_Elemental" 132 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 133 { 134 Mat_Elemental *a = (Mat_Elemental*)A->data; 135 PetscErrorCode ierr; 136 const PetscScalar *x; 137 PetscScalar *y; 138 PetscScalar one = 1,zero = 0; 139 140 PetscFunctionBegin; 141 ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 142 ierr = VecGetArray(Y,&y);CHKERRQ(ierr); 143 { /* Scoping so that constructor is called before pointer is returned */ 144 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 145 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 146 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 147 } 148 ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 149 ierr = VecRestoreArray(Y,&y);CHKERRQ(ierr); 150 PetscFunctionReturn(0); 151 } 152 153 #undef __FUNCT__ 154 #define __FUNCT__ "MatMultAdd_Elemental" 155 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 156 { 157 Mat_Elemental *a = (Mat_Elemental*)A->data; 158 PetscErrorCode ierr; 159 const PetscScalar *x; 160 PetscScalar *z; 161 PetscScalar one = 1.0; 162 163 PetscFunctionBegin; 164 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 165 ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 166 ierr = VecGetArray(Z,&z);CHKERRQ(ierr); 167 { /* Scoping so that constructor is called before pointer is returned */ 168 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 169 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 170 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 171 } 172 ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 173 ierr = VecRestoreArray(Z,&z);CHKERRQ(ierr); 174 PetscFunctionReturn(0); 175 } 176 177 #undef __FUNCT__ 178 #define __FUNCT__ "MatMatMultNumeric_Elemental" 179 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 180 { 181 Mat_Elemental *a = (Mat_Elemental*)A->data; 182 Mat_Elemental *b = (Mat_Elemental*)B->data; 183 Mat_Elemental *c = (Mat_Elemental*)C->data; 184 PetscScalar one = 1.0,zero = 0.0; 185 186 PetscFunctionBegin; 187 { /* Scoping so that constructor is called before pointer is returned */ 188 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 189 } 190 C->assembled = PETSC_TRUE; 191 PetscFunctionReturn(0); 192 } 193 194 #undef __FUNCT__ 195 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 196 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 197 { 198 PetscErrorCode ierr; 199 Mat Ce; 200 MPI_Comm comm=((PetscObject)A)->comm; 201 202 PetscFunctionBegin; 203 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 204 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 205 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 206 ierr = MatSetUp(Ce);CHKERRQ(ierr); 207 *C = Ce; 208 PetscFunctionReturn(0); 209 } 210 211 #undef __FUNCT__ 212 #define __FUNCT__ "MatMatMult_Elemental" 213 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 214 { 215 PetscErrorCode ierr; 216 217 PetscFunctionBegin; 218 if (scall == MAT_INITIAL_MATRIX){ 219 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 220 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 221 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 222 } 223 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 224 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 225 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 226 PetscFunctionReturn(0); 227 } 228 229 #undef __FUNCT__ 230 #define __FUNCT__ "MatScale_Elemental" 231 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 232 { 233 Mat_Elemental *x = (Mat_Elemental*)X->data; 234 235 PetscFunctionBegin; 236 elem::Scal(a,*x->emat); 237 PetscFunctionReturn(0); 238 } 239 240 #undef __FUNCT__ 241 #define __FUNCT__ "MatAXPY_Elemental" 242 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 243 { 244 Mat_Elemental *x = (Mat_Elemental*)X->data; 245 Mat_Elemental *y = (Mat_Elemental*)Y->data; 246 247 PetscFunctionBegin; 248 elem::Axpy(a,*x->emat,*y->emat); 249 PetscFunctionReturn(0); 250 } 251 252 #undef __FUNCT__ 253 #define __FUNCT__ "MatCopy_Elemental" 254 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 255 { 256 Mat_Elemental *a=(Mat_Elemental*)A->data; 257 Mat_Elemental *b=(Mat_Elemental*)B->data; 258 259 PetscFunctionBegin; 260 elem::Copy(*a->emat,*b->emat); 261 PetscFunctionReturn(0); 262 } 263 264 #undef __FUNCT__ 265 #define __FUNCT__ "MatTranspose_Elemental" 266 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 267 { 268 Mat Be; 269 PetscErrorCode ierr; 270 MPI_Comm comm=((PetscObject)A)->comm; 271 272 PetscFunctionBegin; 273 if (reuse == MAT_INITIAL_MATRIX){ 274 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 275 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 276 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 277 ierr = MatSetUp(Be);CHKERRQ(ierr); 278 *B = Be; 279 } 280 Mat_Elemental *a = (Mat_Elemental*)A->data; 281 Mat_Elemental *b = (Mat_Elemental*)Be->data; 282 elem::Transpose(*a->emat,*b->emat); 283 Be->assembled = PETSC_TRUE; 284 PetscFunctionReturn(0); 285 } 286 287 #undef __FUNCT__ 288 #define __FUNCT__ "MatSolve_Elemental" 289 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 290 { 291 Mat_Elemental *a = (Mat_Elemental*)A->data; 292 PetscErrorCode ierr; 293 PetscScalar *x; 294 295 PetscFunctionBegin; 296 ierr = VecCopy(B,X);CHKERRQ(ierr); 297 ierr = VecGetArray(X,&x);CHKERRQ(ierr); 298 { /* Scoping so that constructor is called before pointer is returned */ 299 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 300 elem::DistMatrix<PetscScalar,elem::MC,elem::MR> xer = xe; 301 if ((*a->pivot).AllocatedMemory()) { 302 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 303 elem::Copy(xer,xe); 304 } 305 else { 306 elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 307 elem::Copy(xer,xe); 308 } 309 } 310 ierr = VecRestoreArray(X,&x);CHKERRQ(ierr); 311 PetscFunctionReturn(0); 312 } 313 314 #undef __FUNCT__ 315 #define __FUNCT__ "MatMatSolve_Elemental" 316 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 317 { 318 Mat_Elemental *a=(Mat_Elemental*)A->data; 319 Mat_Elemental *b=(Mat_Elemental*)B->data; 320 Mat_Elemental *x=(Mat_Elemental*)X->data; 321 322 PetscFunctionBegin; 323 elem::Copy(*b->emat,*x->emat); 324 if ((*a->pivot).AllocatedMemory()) { 325 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 326 } 327 else { 328 elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 329 } 330 PetscFunctionReturn(0); 331 } 332 333 #undef __FUNCT__ 334 #define __FUNCT__ "MatLUFactor_Elemental" 335 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 336 { 337 Mat_Elemental *a = (Mat_Elemental*)A->data; 338 339 PetscFunctionBegin; 340 if (info->dtcol){ 341 elem::LU(*a->emat,*a->pivot); 342 } else { 343 elem::LU(*a->emat); 344 } 345 A->factortype = MAT_FACTOR_LU; 346 PetscFunctionReturn(0); 347 } 348 349 #undef __FUNCT__ 350 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 351 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 352 { 353 PetscErrorCode ierr; 354 355 PetscFunctionBegin; 356 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 357 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 358 PetscFunctionReturn(0); 359 } 360 361 #undef __FUNCT__ 362 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 363 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 364 { 365 PetscFunctionBegin; 366 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 367 PetscFunctionReturn(0); 368 } 369 370 #undef __FUNCT__ 371 #define __FUNCT__ "MatCholeskyFactor_Elemental" 372 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 373 { 374 Mat_Elemental *a = (Mat_Elemental*)A->data; 375 376 PetscFunctionBegin; 377 printf("MatCholeskyFactor_Elemental is called...\n"); 378 if (info->dtcol){ 379 /* A = U^T * U for SPD Matrix A */ 380 printf("Cholesky Factorization for SPD Matrices...\n"); 381 elem::Cholesky(elem::UPPER,*a->emat); 382 } else { 383 /* A = U^T * D * U * for Symmetric Matrix A */ 384 printf("LDL^H Factorization for Symmetric Matrices\n"); 385 //elem::LU(*a->emat); 386 } 387 A->factortype = MAT_FACTOR_LU; 388 PetscFunctionReturn(0); 389 } 390 391 EXTERN_C_BEGIN 392 #undef __FUNCT__ 393 #define __FUNCT__ "MatGetFactor_elemental_petsc" 394 static PetscErrorCode MatGetFactor_elemental_petsc(Mat A,MatFactorType ftype,Mat *F) 395 { 396 Mat B; 397 PetscErrorCode ierr; 398 399 PetscFunctionBegin; 400 /* Create the factorization matrix */ 401 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 402 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 403 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 404 ierr = MatSetUp(B);CHKERRQ(ierr); 405 B->factortype = ftype; 406 *F = B; 407 PetscFunctionReturn(0); 408 } 409 EXTERN_C_END 410 411 #undef __FUNCT__ 412 #define __FUNCT__ "MatNorm_Elemental" 413 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 414 { 415 Mat_Elemental *a=(Mat_Elemental*)A->data; 416 417 PetscFunctionBegin; 418 switch (type){ 419 case NORM_1: 420 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 421 break; 422 case NORM_FROBENIUS: 423 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 424 break; 425 case NORM_INFINITY: 426 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 427 break; 428 default: 429 printf("Error: unsupported norm type!\n"); 430 } 431 PetscFunctionReturn(0); 432 } 433 434 #undef __FUNCT__ 435 #define __FUNCT__ "MatZeroEntries_Elemental" 436 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 437 { 438 Mat_Elemental *a=(Mat_Elemental*)A->data; 439 440 PetscFunctionBegin; 441 elem::Zero(*a->emat); 442 PetscFunctionReturn(0); 443 } 444 445 EXTERN_C_BEGIN 446 #undef __FUNCT__ 447 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 448 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 449 { 450 Mat_Elemental *a = (Mat_Elemental*)A->data; 451 PetscErrorCode ierr; 452 PetscInt i,m,shift,stride,*idx; 453 454 PetscFunctionBegin; 455 if (rows) { 456 m = a->emat->LocalHeight(); 457 shift = a->emat->ColShift(); 458 stride = a->emat->ColStride(); 459 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 460 for (i=0; i<m; i++) { 461 PetscInt rank,offset; 462 E2RO(A,0,shift+i*stride,&rank,&offset); 463 RO2P(A,0,rank,offset,&idx[i]); 464 } 465 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 466 } 467 if (cols) { 468 m = a->emat->LocalWidth(); 469 shift = a->emat->RowShift(); 470 stride = a->emat->RowStride(); 471 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 472 for (i=0; i<m; i++) { 473 PetscInt rank,offset; 474 E2RO(A,1,shift+i*stride,&rank,&offset); 475 RO2P(A,1,rank,offset,&idx[i]); 476 } 477 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 478 } 479 PetscFunctionReturn(0); 480 } 481 EXTERN_C_END 482 483 #undef __FUNCT__ 484 #define __FUNCT__ "MatDestroy_Elemental" 485 static PetscErrorCode MatDestroy_Elemental(Mat A) 486 { 487 Mat_Elemental *a = (Mat_Elemental*)A->data; 488 PetscErrorCode ierr; 489 Mat_Elemental_Grid *commgrid; 490 PetscBool flg; 491 MPI_Comm icomm; 492 493 PetscFunctionBegin; 494 delete a->interface; 495 delete a->esubmat; 496 delete a->emat; 497 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 498 499 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 500 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 501 if (--commgrid->grid_refct == 0) { 502 delete commgrid->grid; 503 ierr = PetscFree(commgrid);CHKERRQ(ierr); 504 } 505 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 506 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 507 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 508 ierr = PetscFree(A->data);CHKERRQ(ierr); 509 PetscFunctionReturn(0); 510 } 511 512 #undef __FUNCT__ 513 #define __FUNCT__ "MatSetUp_Elemental" 514 PetscErrorCode MatSetUp_Elemental(Mat A) 515 { 516 Mat_Elemental *a = (Mat_Elemental*)A->data; 517 PetscErrorCode ierr; 518 PetscMPIInt rsize,csize; 519 520 PetscFunctionBegin; 521 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 522 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 523 524 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 525 elem::Zero(*a->emat); 526 527 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 528 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 529 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 530 a->commsize = rsize; 531 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 532 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 533 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 534 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 535 PetscFunctionReturn(0); 536 } 537 538 #undef __FUNCT__ 539 #define __FUNCT__ "MatAssemblyBegin_Elemental" 540 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 541 { 542 Mat_Elemental *a = (Mat_Elemental*)A->data; 543 544 PetscFunctionBegin; 545 a->interface->Detach(); 546 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 547 PetscFunctionReturn(0); 548 } 549 550 #undef __FUNCT__ 551 #define __FUNCT__ "MatAssemblyEnd_Elemental" 552 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 553 { 554 PetscFunctionBegin; 555 /* Currently does nothing */ 556 PetscFunctionReturn(0); 557 } 558 559 /*MC 560 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 561 562 Options Database Keys: 563 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 564 565 Level: beginner 566 567 .seealso: MATDENSE,MatCreateElemental() 568 M*/ 569 EXTERN_C_BEGIN 570 #undef __FUNCT__ 571 #define __FUNCT__ "MatCreate_Elemental" 572 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 573 { 574 Mat_Elemental *a; 575 PetscErrorCode ierr; 576 PetscBool flg; 577 Mat_Elemental_Grid *commgrid; 578 MPI_Comm icomm; 579 580 PetscFunctionBegin; 581 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 582 583 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 584 A->data = (void*)a; 585 586 A->ops->view = MatView_Elemental; 587 A->ops->destroy = MatDestroy_Elemental; 588 A->ops->setup = MatSetUp_Elemental; 589 A->ops->setvalues = MatSetValues_Elemental; 590 A->ops->mult = MatMult_Elemental; 591 A->ops->multadd = MatMultAdd_Elemental; 592 A->ops->matmult = MatMatMult_Elemental; 593 A->ops->matmultsymbolic = MatMatMultSymbolic_Elemental; 594 A->ops->matmultnumeric = MatMatMultNumeric_Elemental; 595 A->ops->assemblybegin = MatAssemblyBegin_Elemental; 596 A->ops->assemblyend = MatAssemblyEnd_Elemental; 597 A->ops->scale = MatScale_Elemental; 598 A->ops->axpy = MatAXPY_Elemental; 599 A->ops->lufactor = MatLUFactor_Elemental; 600 A->ops->lufactorsymbolic = MatLUFactorSymbolic_Elemental; 601 A->ops->lufactornumeric = MatLUFactorNumeric_Elemental; 602 A->ops->matsolve = MatMatSolve_Elemental; 603 A->ops->copy = MatCopy_Elemental; 604 A->ops->transpose = MatTranspose_Elemental; 605 A->ops->norm = MatNorm_Elemental; 606 A->ops->solve = MatSolve_Elemental; 607 A->ops->zeroentries = MatZeroEntries_Elemental; 608 A->ops->choleskyfactor = MatCholeskyFactor_Elemental; 609 610 A->insertmode = NOT_SET_VALUES; 611 612 /* Set up the elemental matrix */ 613 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 614 615 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 616 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 617 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); // MPI_Keyval_free()? 618 } 619 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 620 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 621 if (!flg) { 622 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 623 commgrid->grid = new elem::Grid(cxxcomm); 624 commgrid->grid_refct = 1; 625 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 626 } else { 627 commgrid->grid_refct++; 628 } 629 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 630 a->grid = commgrid->grid; 631 a->emat = new elem::DistMatrix<PetscScalar>(*a->grid); 632 a->esubmat = new elem::Matrix<PetscScalar>(1,1); 633 a->interface = new elem::AxpyInterface<PetscScalar>; 634 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 635 636 /* build cache for off array entries formed */ 637 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 638 639 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 640 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","MatGetFactor_elemental_petsc",MatGetFactor_elemental_petsc);CHKERRQ(ierr); 641 642 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 643 PetscFunctionReturn(0); 644 } 645 EXTERN_C_END 646