1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 #undef __FUNCT__ 58 #define __FUNCT__ "MatView_Elemental" 59 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60 { 61 PetscErrorCode ierr; 62 Mat_Elemental *a = (Mat_Elemental*)A->data; 63 PetscBool iascii; 64 65 PetscFunctionBegin; 66 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67 if (iascii) { 68 PetscViewerFormat format; 69 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70 if (format == PETSC_VIEWER_ASCII_INFO) { 71 SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Info viewer not implemented yet"); 72 } else if (format == PETSC_VIEWER_DEFAULT) { 73 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 74 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 75 a->emat->Print("Elemental matrix (cyclic ordering)"); 76 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 77 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 78 } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by Elemental matrices",((PetscObject)viewer)->type_name); 79 PetscFunctionReturn(0); 80 } 81 82 #undef __FUNCT__ 83 #define __FUNCT__ "MatSetValues_Elemental" 84 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 85 { 86 PetscErrorCode ierr; 87 Mat_Elemental *a = (Mat_Elemental*)A->data; 88 PetscMPIInt rank; 89 PetscInt i,j,rrank,ridx,crank,cidx; 90 91 PetscFunctionBegin; 92 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 93 94 const elem::Grid &grid = a->emat->Grid(); 95 for (i=0; i<nr; i++) { 96 PetscInt erow,ecol,elrow,elcol; 97 if (rows[i] < 0) continue; 98 P2RO(A,0,rows[i],&rrank,&ridx); 99 RO2E(A,0,rrank,ridx,&erow); 100 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 101 for (j=0; j<nc; j++) { 102 if (cols[j] < 0) continue; 103 P2RO(A,1,cols[j],&crank,&cidx); 104 RO2E(A,1,crank,cidx,&ecol); 105 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 106 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 107 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 108 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 109 a->esubmat->Set(0,0, vals[i*nc+j]); 110 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 111 continue; 112 } 113 elrow = erow / grid.MCSize(); 114 elcol = ecol / grid.MRSize(); 115 switch (imode) { 116 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,vals[i*nc+j]); break; 117 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,vals[i*nc+j]); break; 118 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 119 } 120 } 121 } 122 PetscFunctionReturn(0); 123 } 124 125 #undef __FUNCT__ 126 #define __FUNCT__ "MatMult_Elemental" 127 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 128 { 129 Mat_Elemental *a = (Mat_Elemental*)A->data; 130 PetscErrorCode ierr; 131 const PetscScalar *x; 132 PetscScalar *y; 133 PetscScalar one = 1,zero = 0; 134 135 PetscFunctionBegin; 136 ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 137 ierr = VecGetArray(Y,&y);CHKERRQ(ierr); 138 { /* Scoping so that constructor is called before pointer is returned */ 139 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 140 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 141 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 142 } 143 ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 144 ierr = VecRestoreArray(Y,&y);CHKERRQ(ierr); 145 PetscFunctionReturn(0); 146 } 147 148 #undef __FUNCT__ 149 #define __FUNCT__ "MatMultAdd_Elemental" 150 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 151 { 152 Mat_Elemental *a = (Mat_Elemental*)A->data; 153 PetscErrorCode ierr; 154 const PetscScalar *x; 155 PetscScalar *z; 156 PetscScalar one = 1.0; 157 158 PetscFunctionBegin; 159 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 160 ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 161 ierr = VecGetArray(Z,&z);CHKERRQ(ierr); 162 { /* Scoping so that constructor is called before pointer is returned */ 163 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 164 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 165 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 166 } 167 ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 168 ierr = VecRestoreArray(Z,&z);CHKERRQ(ierr); 169 PetscFunctionReturn(0); 170 } 171 172 #undef __FUNCT__ 173 #define __FUNCT__ "MatMatMultNumeric_Elemental" 174 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 175 { 176 Mat_Elemental *a = (Mat_Elemental*)A->data; 177 Mat_Elemental *b = (Mat_Elemental*)B->data; 178 Mat_Elemental *c = (Mat_Elemental*)C->data; 179 PetscScalar one = 1.0,zero = 0.0; 180 181 PetscFunctionBegin; 182 { /* Scoping so that constructor is called before pointer is returned */ 183 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 184 } 185 C->assembled = PETSC_TRUE; 186 PetscFunctionReturn(0); 187 } 188 189 #undef __FUNCT__ 190 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 191 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 192 { 193 PetscErrorCode ierr; 194 Mat Ce; 195 MPI_Comm comm=((PetscObject)A)->comm; 196 197 PetscFunctionBegin; 198 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 199 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 200 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 201 ierr = MatSetUp(Ce);CHKERRQ(ierr); 202 *C = Ce; 203 PetscFunctionReturn(0); 204 } 205 206 #undef __FUNCT__ 207 #define __FUNCT__ "MatMatMult_Elemental" 208 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 209 { 210 PetscErrorCode ierr; 211 212 PetscFunctionBegin; 213 if (scall == MAT_INITIAL_MATRIX){ 214 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 215 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 216 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 217 } 218 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 219 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 220 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 221 PetscFunctionReturn(0); 222 } 223 224 #undef __FUNCT__ 225 #define __FUNCT__ "MatScale_Elemental" 226 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 227 { 228 Mat_Elemental *x = (Mat_Elemental*)X->data; 229 230 PetscFunctionBegin; 231 { /* Scoping so that constructor is called before pointer is returned */ 232 elem::Scal(a,*x->emat); 233 } 234 PetscFunctionReturn(0); 235 } 236 237 #undef __FUNCT__ 238 #define __FUNCT__ "MatAXPY_Elemental" 239 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 240 { 241 Mat_Elemental *x = (Mat_Elemental*)X->data; 242 Mat_Elemental *y = (Mat_Elemental*)Y->data; 243 244 PetscFunctionBegin; 245 { /* Scoping so that constructor is called before pointer is returned */ 246 elem::Axpy(a,*x->emat,*y->emat); 247 } 248 PetscFunctionReturn(0); 249 } 250 251 #undef __FUNCT__ 252 #define __FUNCT__ "MatCopy_Elemental" 253 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 254 { 255 Mat_Elemental *a=(Mat_Elemental*)A->data; 256 Mat_Elemental *b=(Mat_Elemental*)B->data; 257 258 PetscFunctionBegin; 259 elem::Copy(*a->emat,*b->emat); 260 PetscFunctionReturn(0); 261 } 262 263 #undef __FUNCT__ 264 #define __FUNCT__ "MatTranspose_Elemental" 265 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 266 { 267 printf("MatTranspose_Elemental is called...\n"); 268 Mat Be; 269 PetscErrorCode ierr; 270 MPI_Comm comm=((PetscObject)A)->comm; 271 272 PetscFunctionBegin; 273 if (reuse == MAT_INITIAL_MATRIX){ 274 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 275 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 276 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 277 ierr = MatSetUp(Be);CHKERRQ(ierr); 278 *B = Be; 279 } 280 Mat_Elemental *a = (Mat_Elemental*)A->data; 281 Mat_Elemental *b = (Mat_Elemental*)Be->data; 282 elem::Transpose(*a->emat,*b->emat); 283 Be->assembled = PETSC_TRUE; 284 PetscFunctionReturn(0); 285 } 286 287 #undef __FUNCT__ 288 #define __FUNCT__ "MatSolve_Elemental" 289 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 290 { 291 Mat_Elemental *a = (Mat_Elemental*)A->data; 292 PetscErrorCode ierr; 293 //const PetscScalar *b; 294 PetscScalar *x; 295 //PetscScalar one = 1,zero = 0; 296 297 PetscFunctionBegin; 298 ierr = VecCopy(B,X);CHKERRQ(ierr); 299 ierr = VecGetArray(X,&x);CHKERRQ(ierr); 300 { /* Scoping so that constructor is called before pointer is returned */ 301 elem::DistMatrix<PetscScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 302 elem::DistMatrix<PetscScalar,elem::MC,elem::MR> xer = xe; 303 if ((*a->pivot).AllocatedMemory()) { 304 printf("pivot is not empty.\n"); 305 elem::LUSolve(elem::NORMAL,*a->emat,*a->pivot,xer); 306 elem::Copy(xer,xe); 307 } 308 else { 309 printf("pivot is empty.\n"); 310 elem::LUSolve(elem::NORMAL,*a->emat,xer); 311 elem::Copy(xer,xe); 312 } 313 } 314 ierr = VecRestoreArray(X,&x);CHKERRQ(ierr); 315 PetscFunctionReturn(0); 316 } 317 318 #undef __FUNCT__ 319 #define __FUNCT__ "MatMatSolve_Elemental" 320 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 321 { 322 Mat_Elemental *a=(Mat_Elemental*)A->data; 323 Mat_Elemental *b=(Mat_Elemental*)B->data; 324 Mat_Elemental *x=(Mat_Elemental*)X->data; 325 326 PetscFunctionBegin; 327 elem::Copy(*b->emat,*x->emat); 328 if ((*a->pivot).AllocatedMemory()) { 329 printf("pivot is not empty.\n"); 330 elem::LUSolve(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 331 } 332 else { 333 printf("pivot is empty.\n"); 334 elem::LUSolve(elem::NORMAL,*a->emat,*x->emat); 335 } 336 PetscFunctionReturn(0); 337 } 338 339 #undef __FUNCT__ 340 #define __FUNCT__ "MatLUFactor_Elemental" 341 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 342 { 343 Mat_Elemental *a = (Mat_Elemental*)A->data; 344 345 PetscFunctionBegin; 346 printf("MatLUFactor_Elemental is called...\n"); 347 if (info->dtcol){ 348 printf("LUFactor w/ pivoting\n"); 349 elem::LU(*a->emat,*a->pivot); 350 } else { 351 printf("LUFactor w/o pivoting\n"); 352 elem::LU(*a->emat); 353 } 354 A->factortype = MAT_FACTOR_LU; 355 PetscFunctionReturn(0); 356 } 357 358 #undef __FUNCT__ 359 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 360 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 361 { 362 PetscErrorCode ierr; 363 364 PetscFunctionBegin; 365 printf("MatLUFactorNumeric_Elemental is called...\n"); 366 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 367 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 368 PetscFunctionReturn(0); 369 } 370 371 #undef __FUNCT__ 372 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 373 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 374 { 375 PetscFunctionBegin; 376 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 377 PetscFunctionReturn(0); 378 } 379 380 #undef __FUNCT__ 381 #define __FUNCT__ "MatCholeskyFactor_Elemental" 382 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 383 { 384 Mat_Elemental *a = (Mat_Elemental*)A->data; 385 386 PetscFunctionBegin; 387 printf("MatCholeskyFactor_Elemental is called...\n"); 388 if (info->dtcol){ 389 /* A = U^T * U for SPD Matrix A */ 390 printf("Cholesky Factorization for SPD Matrices...\n"); 391 elem::Cholesky(elem::UPPER,*a->emat); 392 } else { 393 /* A = U^T * D * U * for Symmetric Matrix A */ 394 printf("LDL^H Factorization for Symmetric Matrices\n"); 395 //elem::LU(*a->emat); 396 } 397 A->factortype = MAT_FACTOR_LU; 398 PetscFunctionReturn(0); 399 } 400 401 EXTERN_C_BEGIN 402 #undef __FUNCT__ 403 #define __FUNCT__ "MatGetFactor_elemental_petsc" 404 static PetscErrorCode MatGetFactor_elemental_petsc(Mat A,MatFactorType ftype,Mat *F) 405 { 406 Mat B; 407 PetscErrorCode ierr; 408 409 PetscFunctionBegin; 410 printf("MatGetFactor_elemental_petsc is called...\n"); 411 /* Create the factorization matrix */ 412 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 413 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 414 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 415 ierr = MatSetUp(B);CHKERRQ(ierr); 416 B->factortype = ftype; 417 *F = B; 418 PetscFunctionReturn(0); 419 } 420 EXTERN_C_END 421 422 #undef __FUNCT__ 423 #define __FUNCT__ "MatNorm_Elemental" 424 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 425 { 426 Mat_Elemental *a=(Mat_Elemental*)A->data; 427 428 PetscFunctionBegin; 429 printf("MatNorm_Elemental is called...\n"); 430 switch (type){ 431 case NORM_1: 432 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 433 break; 434 case NORM_FROBENIUS: 435 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 436 break; 437 case NORM_INFINITY: 438 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 439 break; 440 default: 441 printf("Error: unsupported norm type!\n"); 442 } 443 PetscFunctionReturn(0); 444 } 445 446 #undef __FUNCT__ 447 #define __FUNCT__ "MatZeroEntries_Elemental" 448 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 449 { 450 Mat_Elemental *a=(Mat_Elemental*)A->data; 451 452 PetscFunctionBegin; 453 elem::Zero(*a->emat); 454 PetscFunctionReturn(0); 455 } 456 457 EXTERN_C_BEGIN 458 #undef __FUNCT__ 459 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 460 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 461 { 462 Mat_Elemental *a = (Mat_Elemental*)A->data; 463 PetscErrorCode ierr; 464 PetscInt i,m,shift,stride,*idx; 465 466 PetscFunctionBegin; 467 if (rows) { 468 m = a->emat->LocalHeight(); 469 shift = a->emat->ColShift(); 470 stride = a->emat->ColStride(); 471 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 472 for (i=0; i<m; i++) { 473 PetscInt rank,offset; 474 E2RO(A,0,shift+i*stride,&rank,&offset); 475 RO2P(A,0,rank,offset,&idx[i]); 476 } 477 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 478 } 479 if (cols) { 480 m = a->emat->LocalWidth(); 481 shift = a->emat->RowShift(); 482 stride = a->emat->RowStride(); 483 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 484 for (i=0; i<m; i++) { 485 PetscInt rank,offset; 486 E2RO(A,1,shift+i*stride,&rank,&offset); 487 RO2P(A,1,rank,offset,&idx[i]); 488 } 489 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 490 } 491 PetscFunctionReturn(0); 492 } 493 EXTERN_C_END 494 495 #undef __FUNCT__ 496 #define __FUNCT__ "MatDestroy_Elemental" 497 static PetscErrorCode MatDestroy_Elemental(Mat A) 498 { 499 Mat_Elemental *a = (Mat_Elemental*)A->data; 500 PetscErrorCode ierr; 501 Mat_Elemental_Grid *commgrid; 502 PetscBool flg; 503 MPI_Comm icomm; 504 505 PetscFunctionBegin; 506 delete a->interface; 507 delete a->esubmat; 508 delete a->emat; 509 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 510 511 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 512 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 513 if (--commgrid->grid_refct == 0) { 514 delete commgrid->grid; 515 ierr = PetscFree(commgrid);CHKERRQ(ierr); 516 } 517 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 518 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 519 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 520 ierr = PetscFree(A->data);CHKERRQ(ierr); 521 PetscFunctionReturn(0); 522 } 523 524 #undef __FUNCT__ 525 #define __FUNCT__ "MatSetUp_Elemental" 526 PetscErrorCode MatSetUp_Elemental(Mat A) 527 { 528 Mat_Elemental *a = (Mat_Elemental*)A->data; 529 PetscErrorCode ierr; 530 PetscMPIInt rsize,csize; 531 532 PetscFunctionBegin; 533 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 534 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 535 536 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 537 elem::Zero(*a->emat); 538 539 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 540 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 541 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 542 a->commsize = rsize; 543 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 544 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 545 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 546 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 547 PetscFunctionReturn(0); 548 } 549 550 #undef __FUNCT__ 551 #define __FUNCT__ "MatAssemblyBegin_Elemental" 552 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 553 { 554 Mat_Elemental *a = (Mat_Elemental*)A->data; 555 556 PetscFunctionBegin; 557 a->interface->Detach(); 558 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 559 PetscFunctionReturn(0); 560 } 561 562 #undef __FUNCT__ 563 #define __FUNCT__ "MatAssemblyEnd_Elemental" 564 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 565 { 566 PetscFunctionBegin; 567 /* Currently does nothing */ 568 PetscFunctionReturn(0); 569 } 570 571 /*MC 572 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 573 574 Options Database Keys: 575 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 576 577 Level: beginner 578 579 .seealso: MATDENSE,MatCreateElemental() 580 M*/ 581 EXTERN_C_BEGIN 582 #undef __FUNCT__ 583 #define __FUNCT__ "MatCreate_Elemental" 584 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 585 { 586 Mat_Elemental *a; 587 PetscErrorCode ierr; 588 PetscBool flg; 589 Mat_Elemental_Grid *commgrid; 590 MPI_Comm icomm; 591 592 PetscFunctionBegin; 593 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 594 595 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 596 A->data = (void*)a; 597 598 A->ops->view = MatView_Elemental; 599 A->ops->destroy = MatDestroy_Elemental; 600 A->ops->setup = MatSetUp_Elemental; 601 A->ops->setvalues = MatSetValues_Elemental; 602 A->ops->mult = MatMult_Elemental; 603 A->ops->multadd = MatMultAdd_Elemental; 604 A->ops->matmult = MatMatMult_Elemental; 605 A->ops->matmultsymbolic = MatMatMultSymbolic_Elemental; 606 A->ops->matmultnumeric = MatMatMultNumeric_Elemental; 607 A->ops->assemblybegin = MatAssemblyBegin_Elemental; 608 A->ops->assemblyend = MatAssemblyEnd_Elemental; 609 A->ops->scale = MatScale_Elemental; 610 A->ops->axpy = MatAXPY_Elemental; 611 A->ops->lufactor = MatLUFactor_Elemental; 612 A->ops->lufactorsymbolic = MatLUFactorSymbolic_Elemental; 613 A->ops->lufactornumeric = MatLUFactorNumeric_Elemental; 614 A->ops->matsolve = MatMatSolve_Elemental; 615 A->ops->copy = MatCopy_Elemental; 616 A->ops->transpose = MatTranspose_Elemental; 617 A->ops->norm = MatNorm_Elemental; 618 A->ops->solve = MatSolve_Elemental; 619 A->ops->zeroentries = MatZeroEntries_Elemental; 620 A->ops->choleskyfactor = MatCholeskyFactor_Elemental; 621 622 A->insertmode = NOT_SET_VALUES; 623 624 /* Set up the elemental matrix */ 625 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 626 627 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 628 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 629 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); // MPI_Keyval_free()? 630 } 631 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 632 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 633 if (!flg) { 634 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 635 commgrid->grid = new elem::Grid(cxxcomm); 636 commgrid->grid_refct = 1; 637 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 638 printf(" create commgrid ...\n"); 639 } else { 640 commgrid->grid_refct++; 641 printf(" share commgrid ...\n"); 642 } 643 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 644 a->grid = commgrid->grid; 645 a->emat = new elem::DistMatrix<PetscScalar>(*a->grid); 646 a->esubmat = new elem::Matrix<PetscScalar>(1,1); 647 a->interface = new elem::AxpyInterface<PetscScalar>; 648 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 649 650 /* build cache for off array entries formed */ 651 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 652 653 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 654 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","MatGetFactor_elemental_petsc",MatGetFactor_elemental_petsc);CHKERRQ(ierr); 655 656 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 657 PetscFunctionReturn(0); 658 } 659 EXTERN_C_END 660