xref: /petsc/src/mat/impls/elemental/matelem.cxx (revision 6a939b3a06c53fa8765c466643491682f6a729a3)
1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/
2 
3 /*
4     The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that
5   is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid
6 */
7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID;
8 
9 #undef __FUNCT__
10 #define __FUNCT__ "PetscElementalInitializePackage"
11 /*@C
12    PetscElementalInitializePackage - Initialize Elemental package
13 
14    Logically Collective
15 
16    Level: developer
17 
18 .seealso: MATELEMENTAL, PetscElementalFinalizePackage()
19 @*/
20 PetscErrorCode PetscElementalInitializePackage(void)
21 {
22   PetscErrorCode ierr;
23 
24   PetscFunctionBegin;
25   if (El::Initialized()) PetscFunctionReturn(0);
26   El::Initialize();   /* called by the 1st call of MatCreate_Elemental */
27   ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr);
28   PetscFunctionReturn(0);
29 }
30 
31 #undef __FUNCT__
32 #define __FUNCT__ "PetscElementalFinalizePackage"
33 /*@C
34    PetscElementalFinalizePackage - Finalize Elemental package
35 
36    Logically Collective
37 
38    Level: developer
39 
40 .seealso: MATELEMENTAL, PetscElementalInitializePackage()
41 @*/
42 PetscErrorCode PetscElementalFinalizePackage(void)
43 {
44   PetscFunctionBegin;
45   El::Finalize();  /* called by PetscFinalize() */
46   PetscFunctionReturn(0);
47 }
48 
49 #undef __FUNCT__
50 #define __FUNCT__ "MatView_Elemental"
51 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer)
52 {
53   PetscErrorCode ierr;
54   Mat_Elemental  *a = (Mat_Elemental*)A->data;
55   PetscBool      iascii;
56 
57   PetscFunctionBegin;
58   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
59   if (iascii) {
60     PetscViewerFormat format;
61     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
62     if (format == PETSC_VIEWER_ASCII_INFO) {
63       /* call elemental viewing function */
64       ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr);
65       ierr = PetscViewerASCIIPrintf(viewer,"  allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr);
66       ierr = PetscViewerASCIIPrintf(viewer,"  grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr);
67       if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
68         /* call elemental viewing function */
69         ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"test matview_elemental 2\n");CHKERRQ(ierr);
70       }
71 
72     } else if (format == PETSC_VIEWER_DEFAULT) {
73       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
74       El::Print( *a->emat, "Elemental matrix (cyclic ordering)" );
75       ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
76       if (A->factortype == MAT_FACTOR_NONE){
77         Mat Adense;
78         ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
79         ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
80         ierr = MatView(Adense,viewer);CHKERRQ(ierr);
81         ierr = MatDestroy(&Adense);CHKERRQ(ierr);
82       }
83     } else SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Format");
84   } else {
85     /* convert to dense format and call MatView() */
86     Mat Adense;
87     ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr);
88     ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr);
89     ierr = MatView(Adense,viewer);CHKERRQ(ierr);
90     ierr = MatDestroy(&Adense);CHKERRQ(ierr);
91   }
92   PetscFunctionReturn(0);
93 }
94 
95 #undef __FUNCT__
96 #define __FUNCT__ "MatGetInfo_Elemental"
97 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info)
98 {
99   Mat_Elemental  *a = (Mat_Elemental*)A->data;
100 
101   PetscFunctionBegin;
102   info->block_size = 1.0;
103 
104   if (flag == MAT_LOCAL) {
105     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
106     info->nz_used        = info->nz_allocated;
107   } else if (flag == MAT_GLOBAL_MAX) {
108     //ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
109     /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */
110     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet");
111   } else if (flag == MAT_GLOBAL_SUM) {
112     //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet");
113     info->nz_allocated   = (double)(*a->emat).AllocatedMemory(); /* locally allocated */
114     info->nz_used        = info->nz_allocated; /* assume Elemental does accurate allocation */
115     //ierr = MPIU_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
116     //PetscPrintf(PETSC_COMM_SELF,"    ... [%d] locally allocated %g\n",rank,info->nz_allocated);
117   }
118 
119   info->nz_unneeded       = 0.0;
120   info->assemblies        = (double)A->num_ass;
121   info->mallocs           = 0;
122   info->memory            = ((PetscObject)A)->mem;
123   info->fill_ratio_given  = 0; /* determined by Elemental */
124   info->fill_ratio_needed = 0;
125   info->factor_mallocs    = 0;
126   PetscFunctionReturn(0);
127 }
128 
129 #undef __FUNCT__
130 #define __FUNCT__ "MatSetOption_Elemental"
131 PetscErrorCode MatSetOption_Elemental(Mat A,MatOption op,PetscBool flg)
132 {
133   Mat_Elemental  *a = (Mat_Elemental*)A->data;
134 
135   PetscFunctionBegin;
136   switch (op) {
137   case MAT_NEW_NONZERO_LOCATIONS:
138   case MAT_NEW_NONZERO_LOCATION_ERR:
139   case MAT_NEW_NONZERO_ALLOCATION_ERR:
140   case MAT_ROW_ORIENTED:
141     a->roworiented = flg;
142     break;
143   case MAT_SYMMETRIC:
144     break;
145   default:
146     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
147   }
148   PetscFunctionReturn(0);
149 }
150 
151 #undef __FUNCT__
152 #define __FUNCT__ "MatSetValues_Elemental"
153 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode)
154 {
155   Mat_Elemental  *a = (Mat_Elemental*)A->data;
156   PetscInt       i,j,rrank,ridx,crank,cidx,erow,ecol,numQueues=0;
157 
158   PetscFunctionBegin;
159   // TODO: Initialize matrix to all zeros?
160 
161   // Count the number of queues from this process
162   if (a->roworiented) {
163     for (i=0; i<nr; i++) {
164       if (rows[i] < 0) continue;
165       P2RO(A,0,rows[i],&rrank,&ridx);
166       RO2E(A,0,rrank,ridx,&erow);
167       if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect row translation");
168       for (j=0; j<nc; j++) {
169         if (cols[j] < 0) continue;
170         P2RO(A,1,cols[j],&crank,&cidx);
171         RO2E(A,1,crank,cidx,&ecol);
172         if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect col translation");
173         if (!a->emat->IsLocal(erow,ecol) ){ /* off-proc entry */
174           /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */
175           if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
176           ++numQueues;
177           continue;
178         }
179         /* printf("Locally updating (%d,%d)\n",erow,ecol); */
180         switch (imode) {
181         case INSERT_VALUES: a->emat->Set(erow,ecol,(PetscElemScalar)vals[i*nc+j]); break;
182         case ADD_VALUES: a->emat->Update(erow,ecol,(PetscElemScalar)vals[i*nc+j]); break;
183         default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
184         }
185       }
186     }
187 
188     /* printf("numQueues=%d\n",numQueues); */
189     a->emat->Reserve( numQueues );
190     for (i=0; i<nr; i++) {
191       if (rows[i] < 0) continue;
192       P2RO(A,0,rows[i],&rrank,&ridx);
193       RO2E(A,0,rrank,ridx,&erow);
194       for (j=0; j<nc; j++) {
195         if (cols[j] < 0) continue;
196         P2RO(A,1,cols[j],&crank,&cidx);
197         RO2E(A,1,crank,cidx,&ecol);
198         if ( !a->emat->IsLocal(erow,ecol) ) { /*off-proc entry*/
199           /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */
200           a->emat->QueueUpdate( erow, ecol, vals[i*nc+j] );
201         }
202       }
203     }
204   } else { /* columnoriented */
205     for (j=0; j<nc; j++) {
206       if (cols[j] < 0) continue;
207       P2RO(A,1,cols[j],&crank,&cidx);
208       RO2E(A,1,crank,cidx,&ecol);
209       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect col translation");
210       for (i=0; i<nr; i++) {
211         if (rows[i] < 0) continue;
212         P2RO(A,0,rows[i],&rrank,&ridx);
213         RO2E(A,0,rrank,ridx,&erow);
214         if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect row translation");
215         if (!a->emat->IsLocal(erow,ecol) ){ /* off-proc entry */
216           /* printf("Will later remotely update (%d,%d)\n",erow,ecol); */
217           if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported");
218           ++numQueues;
219           continue;
220         }
221         /* printf("Locally updating (%d,%d)\n",erow,ecol); */
222         switch (imode) {
223         case INSERT_VALUES: a->emat->Set(erow,ecol,(PetscElemScalar)vals[i+j*nr]); break;
224         case ADD_VALUES: a->emat->Update(erow,ecol,(PetscElemScalar)vals[i+j*nr]); break;
225         default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode);
226         }
227       }
228     }
229 
230     /* printf("numQueues=%d\n",numQueues); */
231     a->emat->Reserve( numQueues );
232     for (j=0; j<nc; j++) {
233       if (cols[j] < 0) continue;
234       P2RO(A,1,cols[j],&crank,&cidx);
235       RO2E(A,1,crank,cidx,&ecol);
236 
237       for (i=0; i<nr; i++) {
238         if (rows[i] < 0) continue;
239         P2RO(A,0,rows[i],&rrank,&ridx);
240         RO2E(A,0,rrank,ridx,&erow);
241         if ( !a->emat->IsLocal(erow,ecol) ) { /*off-proc entry*/
242           /* printf("Queueing remotely update of (%d,%d)\n",erow,ecol); */
243           a->emat->QueueUpdate( erow, ecol, vals[i+j*nr] );
244         }
245       }
246     }
247   }
248   PetscFunctionReturn(0);
249 }
250 
251 #undef __FUNCT__
252 #define __FUNCT__ "MatMult_Elemental"
253 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y)
254 {
255   Mat_Elemental         *a = (Mat_Elemental*)A->data;
256   PetscErrorCode        ierr;
257   const PetscElemScalar *x;
258   PetscElemScalar       *y;
259   PetscElemScalar       one = 1,zero = 0;
260 
261   PetscFunctionBegin;
262   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
263   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
264   { /* Scoping so that constructor is called before pointer is returned */
265     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> xe, ye;
266     xe.LockedAttach(A->cmap->N,1,*a->grid,0,0,x,A->cmap->n);
267     ye.Attach(A->rmap->N,1,*a->grid,0,0,y,A->rmap->n);
268     El::Gemv(El::NORMAL,one,*a->emat,xe,zero,ye);
269   }
270   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
271   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
272   PetscFunctionReturn(0);
273 }
274 
275 #undef __FUNCT__
276 #define __FUNCT__ "MatMultTranspose_Elemental"
277 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y)
278 {
279   Mat_Elemental         *a = (Mat_Elemental*)A->data;
280   PetscErrorCode        ierr;
281   const PetscElemScalar *x;
282   PetscElemScalar       *y;
283   PetscElemScalar       one = 1,zero = 0;
284 
285   PetscFunctionBegin;
286   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
287   ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
288   { /* Scoping so that constructor is called before pointer is returned */
289     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> xe, ye;
290     xe.LockedAttach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n);
291     ye.Attach(A->cmap->N,1,*a->grid,0,0,y,A->cmap->n);
292     El::Gemv(El::TRANSPOSE,one,*a->emat,xe,zero,ye);
293   }
294   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
295   ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr);
296   PetscFunctionReturn(0);
297 }
298 
299 #undef __FUNCT__
300 #define __FUNCT__ "MatMultAdd_Elemental"
301 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
302 {
303   Mat_Elemental         *a = (Mat_Elemental*)A->data;
304   PetscErrorCode        ierr;
305   const PetscElemScalar *x;
306   PetscElemScalar       *z;
307   PetscElemScalar       one = 1;
308 
309   PetscFunctionBegin;
310   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
311   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
312   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
313   { /* Scoping so that constructor is called before pointer is returned */
314     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> xe, ze;
315     xe.LockedAttach(A->cmap->N,1,*a->grid,0,0,x,A->cmap->n);
316     ze.Attach(A->rmap->N,1,*a->grid,0,0,z,A->rmap->n);
317     El::Gemv(El::NORMAL,one,*a->emat,xe,one,ze);
318   }
319   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
320   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
321   PetscFunctionReturn(0);
322 }
323 
324 #undef __FUNCT__
325 #define __FUNCT__ "MatMultTransposeAdd_Elemental"
326 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z)
327 {
328   Mat_Elemental         *a = (Mat_Elemental*)A->data;
329   PetscErrorCode        ierr;
330   const PetscElemScalar *x;
331   PetscElemScalar       *z;
332   PetscElemScalar       one = 1;
333 
334   PetscFunctionBegin;
335   if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);}
336   ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
337   ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
338   { /* Scoping so that constructor is called before pointer is returned */
339     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> xe, ze;
340     xe.LockedAttach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n);
341     ze.Attach(A->cmap->N,1,*a->grid,0,0,z,A->cmap->n);
342     El::Gemv(El::TRANSPOSE,one,*a->emat,xe,one,ze);
343   }
344   ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr);
345   ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr);
346   PetscFunctionReturn(0);
347 }
348 
349 #undef __FUNCT__
350 #define __FUNCT__ "MatElementalHerk_Elemental"
351 PetscErrorCode MatElementalHerk_Elemental(El::UpperOrLower uplo,El::Orientation orientation,PetscScalar alpha,Mat A,PetscScalar beta,Mat C)
352 {
353   Mat_Elemental  *a=(Mat_Elemental*)A->data,*c=(Mat_Elemental*)C->data;
354 
355   PetscFunctionBegin;
356   El::Herk(uplo,orientation,alpha,*a->emat,beta,*c->emat);
357   PetscFunctionReturn(0);
358 }
359 
360 #undef __FUNCT__
361 #define __FUNCT__ "MatElementalHerk"
362 /*@
363   MatElementalHerk - Hermitian rank-K update:
364     updates C:= αAA^H + βC or C:= αA^HA + βC, depending upon whether orientation is set to NORMAL or ADJOINT, respectively. Only the triangle of C specified by the uplo parameter is modified.
365 
366    Logically Collective on Mat
367 
368    Level: beginner
369 
370    References:
371 .      Elemental Users' Guide
372 
373 @*/
374 PetscErrorCode MatElementalHerk(El::UpperOrLower uplo,El::Orientation orientation,PetscScalar alpha,Mat A,PetscScalar beta,Mat C)
375 {
376   PetscErrorCode ierr;
377 
378   PetscFunctionBegin;
379   ierr = PetscUseMethod(A,"MatElementalHerk_C",(El::UpperOrLower,El::Orientation,PetscScalar,Mat,PetscScalar,Mat),(uplo,orientation,alpha,A,beta,C));CHKERRQ(ierr);
380   PetscFunctionReturn(0);
381 }
382 
383 #undef __FUNCT__
384 #define __FUNCT__ "MatElementalSyrk_Elemental"
385 PetscErrorCode MatElementalSyrk_Elemental(El::UpperOrLower uplo,El::Orientation orientation,PetscScalar alpha,Mat A,PetscScalar beta,Mat C,PetscBool conjugate)
386 {
387   Mat_Elemental  *a=(Mat_Elemental*)A->data,*c=(Mat_Elemental*)C->data;
388 
389   PetscFunctionBegin;
390   El::Syrk(uplo,orientation,alpha,*a->emat,beta,*c->emat,conjugate);
391   PetscFunctionReturn(0);
392 }
393 
394 #undef __FUNCT__
395 #define __FUNCT__ "MatElementalSyrk"
396 /*@
397   MatElementalSyrk - Symmetric rank-K update:
398     updates C:= αAA^T + βC or C:= αA^TA + βC, depending upon whether orientation is set to NORMAL or TRANSPOSE, respectively. Only the triangle of C specified by the uplo parameter is modified.
399 
400    Logically Collective on Mat
401 
402    Level: beginner
403 
404    References:
405 .      Elemental Users' Guide
406 
407 @*/
408 PetscErrorCode MatElementalSyrk(El::UpperOrLower uplo,El::Orientation orientation,PetscScalar alpha,Mat A,PetscScalar beta,Mat C,PetscBool conjugate)
409 {
410   PetscErrorCode ierr;
411 
412   PetscFunctionBegin;
413   ierr = PetscUseMethod(A,"MatElementalSyrk_C",(El::UpperOrLower,El::Orientation,PetscScalar,Mat,PetscScalar,Mat,PetscBool),(uplo,orientation,alpha,A,beta,C,conjugate));CHKERRQ(ierr);
414   PetscFunctionReturn(0);
415 }
416 
417 #undef __FUNCT__
418 #define __FUNCT__ "MatMatMultNumeric_Elemental"
419 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C)
420 {
421   Mat_Elemental    *a = (Mat_Elemental*)A->data;
422   Mat_Elemental    *b = (Mat_Elemental*)B->data;
423   Mat_Elemental    *c = (Mat_Elemental*)C->data;
424   PetscElemScalar  one = 1,zero = 0;
425 
426   PetscFunctionBegin;
427   { /* Scoping so that constructor is called before pointer is returned */
428     El::Gemm(El::NORMAL,El::NORMAL,one,*a->emat,*b->emat,zero,*c->emat);
429   }
430   C->assembled = PETSC_TRUE;
431   PetscFunctionReturn(0);
432 }
433 
434 #undef __FUNCT__
435 #define __FUNCT__ "MatMatMultSymbolic_Elemental"
436 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
437 {
438   PetscErrorCode ierr;
439   Mat            Ce;
440   MPI_Comm       comm;
441 
442   PetscFunctionBegin;
443   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
444   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
445   ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
446   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
447   ierr = MatSetUp(Ce);CHKERRQ(ierr);
448   *C = Ce;
449   PetscFunctionReturn(0);
450 }
451 
452 #undef __FUNCT__
453 #define __FUNCT__ "MatMatMult_Elemental"
454 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
455 {
456   PetscErrorCode ierr;
457 
458   PetscFunctionBegin;
459   if (scall == MAT_INITIAL_MATRIX){
460     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
461     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
462     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
463   }
464   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
465   ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
466   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
467   PetscFunctionReturn(0);
468 }
469 
470 #undef __FUNCT__
471 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental"
472 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C)
473 {
474   Mat_Elemental      *a = (Mat_Elemental*)A->data;
475   Mat_Elemental      *b = (Mat_Elemental*)B->data;
476   Mat_Elemental      *c = (Mat_Elemental*)C->data;
477   PetscElemScalar    one = 1,zero = 0;
478 
479   PetscFunctionBegin;
480   { /* Scoping so that constructor is called before pointer is returned */
481     El::Gemm(El::NORMAL,El::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat);
482   }
483   C->assembled = PETSC_TRUE;
484   PetscFunctionReturn(0);
485 }
486 
487 #undef __FUNCT__
488 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental"
489 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C)
490 {
491   PetscErrorCode ierr;
492   Mat            Ce;
493   MPI_Comm       comm;
494 
495   PetscFunctionBegin;
496   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
497   ierr = MatCreate(comm,&Ce);CHKERRQ(ierr);
498   ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
499   ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr);
500   ierr = MatSetUp(Ce);CHKERRQ(ierr);
501   *C = Ce;
502   PetscFunctionReturn(0);
503 }
504 
505 #undef __FUNCT__
506 #define __FUNCT__ "MatMatTransposeMult_Elemental"
507 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
508 {
509   PetscErrorCode ierr;
510 
511   PetscFunctionBegin;
512   if (scall == MAT_INITIAL_MATRIX){
513     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
514     ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr);
515     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
516   }
517   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
518   ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr);
519   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
520   PetscFunctionReturn(0);
521 }
522 
523 #undef __FUNCT__
524 #define __FUNCT__ "MatGetDiagonal_Elemental"
525 static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D)
526 {
527   PetscInt        i,nrows,ncols,nD,rrank,ridx,crank,cidx;
528   Mat_Elemental   *a = (Mat_Elemental*)A->data;
529   PetscErrorCode  ierr;
530   PetscElemScalar v;
531   MPI_Comm        comm;
532 
533   PetscFunctionBegin;
534   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
535   ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr);
536   nD = nrows>ncols ? ncols : nrows;
537   for (i=0; i<nD; i++) {
538     PetscInt erow,ecol;
539     P2RO(A,0,i,&rrank,&ridx);
540     RO2E(A,0,rrank,ridx,&erow);
541     if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
542     P2RO(A,1,i,&crank,&cidx);
543     RO2E(A,1,crank,cidx,&ecol);
544     if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
545     v = a->emat->Get(erow,ecol);
546     ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr);
547   }
548   ierr = VecAssemblyBegin(D);CHKERRQ(ierr);
549   ierr = VecAssemblyEnd(D);CHKERRQ(ierr);
550   PetscFunctionReturn(0);
551 }
552 
553 #undef __FUNCT__
554 #define __FUNCT__ "MatDiagonalScale_Elemental"
555 static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R)
556 {
557   Mat_Elemental         *x = (Mat_Elemental*)X->data;
558   const PetscElemScalar *d;
559   PetscErrorCode        ierr;
560 
561   PetscFunctionBegin;
562   if (R) {
563     ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
564     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> de;
565     de.LockedAttach(X->cmap->N,1,*x->grid,0,0,d,X->cmap->n);
566     El::DiagonalScale(El::RIGHT,El::NORMAL,de,*x->emat);
567     ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr);
568   }
569   if (L) {
570     ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
571     El::DistMatrix<PetscElemScalar,El::VC,El::STAR> de;
572     de.LockedAttach(X->rmap->N,1,*x->grid,0,0,d,X->rmap->n);
573     El::DiagonalScale(El::LEFT,El::NORMAL,de,*x->emat);
574     ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr);
575   }
576   PetscFunctionReturn(0);
577 }
578 
579 #undef __FUNCT__
580 #define __FUNCT__ "MatScale_Elemental"
581 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a)
582 {
583   Mat_Elemental  *x = (Mat_Elemental*)X->data;
584 
585   PetscFunctionBegin;
586   El::Scale((PetscElemScalar)a,*x->emat);
587   PetscFunctionReturn(0);
588 }
589 
590 /*
591   MatAXPY - Computes Y = a*X + Y.
592 */
593 #undef __FUNCT__
594 #define __FUNCT__ "MatAXPY_Elemental"
595 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str)
596 {
597   Mat_Elemental  *x = (Mat_Elemental*)X->data;
598   Mat_Elemental  *y = (Mat_Elemental*)Y->data;
599   PetscErrorCode ierr;
600 
601   PetscFunctionBegin;
602   El::Axpy((PetscElemScalar)a,*x->emat,*y->emat);
603   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
604   PetscFunctionReturn(0);
605 }
606 
607 #undef __FUNCT__
608 #define __FUNCT__ "MatCopy_Elemental"
609 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str)
610 {
611   Mat_Elemental *a=(Mat_Elemental*)A->data;
612   Mat_Elemental *b=(Mat_Elemental*)B->data;
613 
614   PetscFunctionBegin;
615   El::Copy(*a->emat,*b->emat);
616   PetscFunctionReturn(0);
617 }
618 
619 #undef __FUNCT__
620 #define __FUNCT__ "MatDuplicate_Elemental"
621 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B)
622 {
623   Mat            Be;
624   MPI_Comm       comm;
625   Mat_Elemental  *a=(Mat_Elemental*)A->data;
626   PetscErrorCode ierr;
627 
628   PetscFunctionBegin;
629   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
630   ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
631   ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
632   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
633   ierr = MatSetUp(Be);CHKERRQ(ierr);
634   *B = Be;
635   if (op == MAT_COPY_VALUES) {
636     Mat_Elemental *b=(Mat_Elemental*)Be->data;
637     El::Copy(*a->emat,*b->emat);
638   }
639   Be->assembled = PETSC_TRUE;
640   PetscFunctionReturn(0);
641 }
642 
643 #undef __FUNCT__
644 #define __FUNCT__ "MatTranspose_Elemental"
645 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
646 {
647   Mat            Be = *B;
648   PetscErrorCode ierr;
649   MPI_Comm       comm;
650   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
651 
652   PetscFunctionBegin;
653   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
654   /* Only out-of-place supported */
655   if (reuse == MAT_INITIAL_MATRIX){
656     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
657     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
658     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
659     ierr = MatSetUp(Be);CHKERRQ(ierr);
660     *B = Be;
661   }
662   b = (Mat_Elemental*)Be->data;
663   El::Transpose(*a->emat,*b->emat);
664   Be->assembled = PETSC_TRUE;
665   PetscFunctionReturn(0);
666 }
667 
668 #undef __FUNCT__
669 #define __FUNCT__ "MatConjugate_Elemental"
670 static PetscErrorCode MatConjugate_Elemental(Mat A)
671 {
672   Mat_Elemental  *a = (Mat_Elemental*)A->data;
673 
674   PetscFunctionBegin;
675   El::Conjugate(*a->emat);
676   PetscFunctionReturn(0);
677 }
678 
679 #undef __FUNCT__
680 #define __FUNCT__ "MatHermitianTranspose_Elemental"
681 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B)
682 {
683   Mat            Be = *B;
684   PetscErrorCode ierr;
685   MPI_Comm       comm;
686   Mat_Elemental  *a = (Mat_Elemental*)A->data, *b;
687 
688   PetscFunctionBegin;
689   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
690   /* Only out-of-place supported */
691   if (reuse == MAT_INITIAL_MATRIX){
692     ierr = MatCreate(comm,&Be);CHKERRQ(ierr);
693     ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
694     ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
695     ierr = MatSetUp(Be);CHKERRQ(ierr);
696     *B = Be;
697   }
698   b = (Mat_Elemental*)Be->data;
699   El::Adjoint(*a->emat,*b->emat);
700   Be->assembled = PETSC_TRUE;
701   PetscFunctionReturn(0);
702 }
703 
704 #undef __FUNCT__
705 #define __FUNCT__ "MatSolve_Elemental"
706 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X)
707 {
708   Mat_Elemental     *a = (Mat_Elemental*)A->data;
709   PetscErrorCode    ierr;
710   PetscElemScalar   *x;
711 
712   PetscFunctionBegin;
713   ierr = VecCopy(B,X);CHKERRQ(ierr);
714   ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
715   El::DistMatrix<PetscElemScalar,El::VC,El::STAR> xe;
716   xe.Attach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n);
717   El::DistMatrix<PetscElemScalar,El::MC,El::MR> xer(xe);
718   switch (A->factortype) {
719   case MAT_FACTOR_LU:
720     if ((*a->pivot).AllocatedMemory()) {
721       El::lu::SolveAfter(El::NORMAL,*a->emat,*a->pivot,xer);
722       El::Copy(xer,xe);
723     } else {
724       El::lu::SolveAfter(El::NORMAL,*a->emat,xer);
725       El::Copy(xer,xe);
726     }
727     break;
728   case MAT_FACTOR_CHOLESKY:
729     El::cholesky::SolveAfter(El::UPPER,El::NORMAL,*a->emat,xer);
730     El::Copy(xer,xe);
731     break;
732   default:
733     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
734     break;
735   }
736   ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr);
737   PetscFunctionReturn(0);
738 }
739 
740 #undef __FUNCT__
741 #define __FUNCT__ "MatSolveAdd_Elemental"
742 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X)
743 {
744   PetscErrorCode    ierr;
745 
746   PetscFunctionBegin;
747   ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr);
748   ierr = VecAXPY(X,1,Y);CHKERRQ(ierr);
749   PetscFunctionReturn(0);
750 }
751 
752 #undef __FUNCT__
753 #define __FUNCT__ "MatMatSolve_Elemental"
754 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X)
755 {
756   Mat_Elemental *a=(Mat_Elemental*)A->data;
757   Mat_Elemental *b=(Mat_Elemental*)B->data;
758   Mat_Elemental *x=(Mat_Elemental*)X->data;
759 
760   PetscFunctionBegin;
761   El::Copy(*b->emat,*x->emat);
762   switch (A->factortype) {
763   case MAT_FACTOR_LU:
764     if ((*a->pivot).AllocatedMemory()) {
765       El::lu::SolveAfter(El::NORMAL,*a->emat,*a->pivot,*x->emat);
766     } else {
767       El::lu::SolveAfter(El::NORMAL,*a->emat,*x->emat);
768     }
769     break;
770   case MAT_FACTOR_CHOLESKY:
771     El::cholesky::SolveAfter(El::UPPER,El::NORMAL,*a->emat,*x->emat);
772     break;
773   default:
774     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType");
775     break;
776   }
777   PetscFunctionReturn(0);
778 }
779 
780 #undef __FUNCT__
781 #define __FUNCT__ "MatLUFactor_Elemental"
782 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info)
783 {
784   Mat_Elemental  *a = (Mat_Elemental*)A->data;
785   PetscErrorCode ierr;
786 
787   PetscFunctionBegin;
788   if (info->dtcol){
789     El::LU(*a->emat,*a->pivot);
790   } else {
791     El::LU(*a->emat);
792   }
793   A->factortype = MAT_FACTOR_LU;
794   A->assembled  = PETSC_TRUE;
795 
796   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
797   ierr = PetscStrallocpy(MATSOLVERELEMENTAL,&A->solvertype);CHKERRQ(ierr);
798   PetscFunctionReturn(0);
799 }
800 
801 #undef __FUNCT__
802 #define __FUNCT__ "MatLUFactorNumeric_Elemental"
803 static PetscErrorCode  MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
804 {
805   PetscErrorCode ierr;
806 
807   PetscFunctionBegin;
808   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
809   ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr);
810   PetscFunctionReturn(0);
811 }
812 
813 #undef __FUNCT__
814 #define __FUNCT__ "MatLUFactorSymbolic_Elemental"
815 static PetscErrorCode  MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
816 {
817   PetscFunctionBegin;
818   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
819   PetscFunctionReturn(0);
820 }
821 
822 #undef __FUNCT__
823 #define __FUNCT__ "MatCholeskyFactor_Elemental"
824 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info)
825 {
826   Mat_Elemental  *a = (Mat_Elemental*)A->data;
827   El::DistMatrix<PetscElemScalar,El::MC,El::STAR> d;
828   PetscErrorCode ierr;
829 
830   PetscFunctionBegin;
831   El::Cholesky(El::UPPER,*a->emat);
832   A->factortype = MAT_FACTOR_CHOLESKY;
833   A->assembled  = PETSC_TRUE;
834 
835   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
836   ierr = PetscStrallocpy(MATSOLVERELEMENTAL,&A->solvertype);CHKERRQ(ierr);
837   PetscFunctionReturn(0);
838 }
839 
840 #undef __FUNCT__
841 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental"
842 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info)
843 {
844   PetscErrorCode ierr;
845 
846   PetscFunctionBegin;
847   ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
848   ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr);
849   PetscFunctionReturn(0);
850 }
851 
852 #undef __FUNCT__
853 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental"
854 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info)
855 {
856   PetscFunctionBegin;
857   /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */
858   PetscFunctionReturn(0);
859 }
860 
861 #undef __FUNCT__
862 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental"
863 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type)
864 {
865   PetscFunctionBegin;
866   *type = MATSOLVERELEMENTAL;
867   PetscFunctionReturn(0);
868 }
869 
870 #undef __FUNCT__
871 #define __FUNCT__ "MatGetFactor_elemental_elemental"
872 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F)
873 {
874   Mat            B;
875   PetscErrorCode ierr;
876 
877   PetscFunctionBegin;
878   /* Create the factorization matrix */
879   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
880   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
881   ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr);
882   ierr = MatSetUp(B);CHKERRQ(ierr);
883   B->factortype = ftype;
884   ierr = PetscFree(B->solvertype);CHKERRQ(ierr);
885   ierr = PetscStrallocpy(MATSOLVERELEMENTAL,&B->solvertype);CHKERRQ(ierr);
886 
887   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr);
888   *F            = B;
889   PetscFunctionReturn(0);
890 }
891 
892 #undef __FUNCT__
893 #define __FUNCT__ "MatSolverPackageRegister_Elemental"
894 PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_Elemental(void)
895 {
896   PetscErrorCode ierr;
897 
898   PetscFunctionBegin;
899   ierr = MatSolverPackageRegister(MATSOLVERELEMENTAL,MATELEMENTAL,        MAT_FACTOR_LU,MatGetFactor_elemental_elemental);CHKERRQ(ierr);
900   ierr = MatSolverPackageRegister(MATSOLVERELEMENTAL,MATELEMENTAL,        MAT_FACTOR_CHOLESKY,MatGetFactor_elemental_elemental);CHKERRQ(ierr);
901   PetscFunctionReturn(0);
902 }
903 
904 #undef __FUNCT__
905 #define __FUNCT__ "MatNorm_Elemental"
906 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm)
907 {
908   Mat_Elemental *a=(Mat_Elemental*)A->data;
909 
910   PetscFunctionBegin;
911   switch (type){
912   case NORM_1:
913     *nrm = El::OneNorm(*a->emat);
914     break;
915   case NORM_FROBENIUS:
916     *nrm = El::FrobeniusNorm(*a->emat);
917     break;
918   case NORM_INFINITY:
919     *nrm = El::InfinityNorm(*a->emat);
920     break;
921   default:
922     printf("Error: unsupported norm type!\n");
923   }
924   PetscFunctionReturn(0);
925 }
926 
927 #undef __FUNCT__
928 #define __FUNCT__ "MatZeroEntries_Elemental"
929 static PetscErrorCode MatZeroEntries_Elemental(Mat A)
930 {
931   Mat_Elemental *a=(Mat_Elemental*)A->data;
932 
933   PetscFunctionBegin;
934   El::Zero(*a->emat);
935   PetscFunctionReturn(0);
936 }
937 
938 #undef __FUNCT__
939 #define __FUNCT__ "MatGetOwnershipIS_Elemental"
940 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols)
941 {
942   Mat_Elemental  *a = (Mat_Elemental*)A->data;
943   PetscErrorCode ierr;
944   PetscInt       i,m,shift,stride,*idx;
945 
946   PetscFunctionBegin;
947   if (rows) {
948     m = a->emat->LocalHeight();
949     shift = a->emat->ColShift();
950     stride = a->emat->ColStride();
951     ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr);
952     for (i=0; i<m; i++) {
953       PetscInt rank,offset;
954       E2RO(A,0,shift+i*stride,&rank,&offset);
955       RO2P(A,0,rank,offset,&idx[i]);
956     }
957     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr);
958   }
959   if (cols) {
960     m = a->emat->LocalWidth();
961     shift = a->emat->RowShift();
962     stride = a->emat->RowStride();
963     ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr);
964     for (i=0; i<m; i++) {
965       PetscInt rank,offset;
966       E2RO(A,1,shift+i*stride,&rank,&offset);
967       RO2P(A,1,rank,offset,&idx[i]);
968     }
969     ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr);
970   }
971   PetscFunctionReturn(0);
972 }
973 
974 #undef __FUNCT__
975 #define __FUNCT__ "MatConvert_Elemental_Dense"
976 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B)
977 {
978   Mat                Bmpi;
979   Mat_Elemental      *a = (Mat_Elemental*)A->data;
980   MPI_Comm           comm;
981   PetscErrorCode     ierr;
982   IS                 isrows,iscols;
983   PetscInt           rrank,ridx,crank,cidx,nrows,ncols,i,j,erow,ecol,elrow,elcol;
984   const PetscInt     *rows,*cols;
985   PetscElemScalar    v;
986   const El::Grid     &grid = a->emat->Grid();
987 
988   PetscFunctionBegin;
989   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
990 
991   if (reuse == MAT_REUSE_MATRIX) {
992     Bmpi = *B;
993   } else {
994     ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr);
995     ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
996     ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr);
997     ierr = MatSetUp(Bmpi);CHKERRQ(ierr);
998   }
999 
1000   /* Get local entries of A */
1001   ierr = MatGetOwnershipIS(A,&isrows,&iscols);CHKERRQ(ierr);
1002   ierr = ISGetLocalSize(isrows,&nrows);CHKERRQ(ierr);
1003   ierr = ISGetIndices(isrows,&rows);CHKERRQ(ierr);
1004   ierr = ISGetLocalSize(iscols,&ncols);CHKERRQ(ierr);
1005   ierr = ISGetIndices(iscols,&cols);CHKERRQ(ierr);
1006 
1007   if (a->roworiented) {
1008     for (i=0; i<nrows; i++) {
1009       P2RO(A,0,rows[i],&rrank,&ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */
1010       RO2E(A,0,rrank,ridx,&erow);
1011       if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
1012       for (j=0; j<ncols; j++) {
1013         P2RO(A,1,cols[j],&crank,&cidx);
1014         RO2E(A,1,crank,cidx,&ecol);
1015         if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
1016 
1017         elrow = erow / grid.MCSize(); /* Elemental local row index */
1018         elcol = ecol / grid.MRSize(); /* Elemental local column index */
1019         v = a->emat->GetLocal(elrow,elcol);
1020         ierr = MatSetValues(Bmpi,1,&rows[i],1,&cols[j],(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
1021       }
1022     }
1023   } else { /* column-oriented */
1024     for (j=0; j<ncols; j++) {
1025       P2RO(A,1,cols[j],&crank,&cidx);
1026       RO2E(A,1,crank,cidx,&ecol);
1027       if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation");
1028       for (i=0; i<nrows; i++) {
1029         P2RO(A,0,rows[i],&rrank,&ridx); /* convert indices between PETSc <-> (Rank,Offset) <-> Elemental */
1030         RO2E(A,0,rrank,ridx,&erow);
1031         if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation");
1032 
1033         elrow = erow / grid.MCSize(); /* Elemental local row index */
1034         elcol = ecol / grid.MRSize(); /* Elemental local column index */
1035         v = a->emat->GetLocal(elrow,elcol);
1036         ierr = MatSetValues(Bmpi,1,&rows[i],1,&cols[j],(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr);
1037       }
1038     }
1039   }
1040   ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1041   ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1042   if (reuse == MAT_INPLACE_MATRIX) {
1043     ierr = MatHeaderReplace(A,&Bmpi);CHKERRQ(ierr);
1044   } else {
1045     *B = Bmpi;
1046   }
1047   ierr = ISDestroy(&isrows);CHKERRQ(ierr);
1048   ierr = ISDestroy(&iscols);CHKERRQ(ierr);
1049   PetscFunctionReturn(0);
1050 }
1051 
1052 #undef __FUNCT__
1053 #define __FUNCT__ "MatConvert_SeqAIJ_Elemental"
1054 PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
1055 {
1056   Mat               mat_elemental;
1057   PetscErrorCode    ierr;
1058   PetscInt          M=A->rmap->N,N=A->cmap->N,row,ncols;
1059   const PetscInt    *cols;
1060   const PetscScalar *vals;
1061 
1062   PetscFunctionBegin;
1063   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1064   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1065   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1066   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
1067   for (row=0; row<M; row++) {
1068     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1069     /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
1070     ierr = MatSetValues(mat_elemental,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1071     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1072   }
1073   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1074   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1075 
1076   if (reuse == MAT_INPLACE_MATRIX) {
1077     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
1078   } else {
1079     *newmat = mat_elemental;
1080   }
1081   PetscFunctionReturn(0);
1082 }
1083 
1084 #undef __FUNCT__
1085 #define __FUNCT__ "MatConvert_MPIAIJ_Elemental"
1086 PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
1087 {
1088   Mat               mat_elemental;
1089   PetscErrorCode    ierr;
1090   PetscInt          row,ncols,rstart=A->rmap->rstart,rend=A->rmap->rend,j;
1091   const PetscInt    *cols;
1092   const PetscScalar *vals;
1093 
1094   PetscFunctionBegin;
1095   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1096   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1097   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1098   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
1099   for (row=rstart; row<rend; row++) {
1100     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1101     for (j=0; j<ncols; j++) {
1102       /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
1103       ierr = MatSetValues(mat_elemental,1,&row,1,&cols[j],&vals[j],ADD_VALUES);CHKERRQ(ierr);
1104     }
1105     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1106   }
1107   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1108   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1109 
1110   if (reuse == MAT_INPLACE_MATRIX) {
1111     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
1112   } else {
1113     *newmat = mat_elemental;
1114   }
1115   PetscFunctionReturn(0);
1116 }
1117 
1118 #undef __FUNCT__
1119 #define __FUNCT__ "MatConvert_SeqSBAIJ_Elemental"
1120 PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
1121 {
1122   Mat               mat_elemental;
1123   PetscErrorCode    ierr;
1124   PetscInt          M=A->rmap->N,N=A->cmap->N,row,ncols,j;
1125   const PetscInt    *cols;
1126   const PetscScalar *vals;
1127 
1128   PetscFunctionBegin;
1129   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1130   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1131   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1132   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
1133   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
1134   for (row=0; row<M; row++) {
1135     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1136     /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
1137     ierr = MatSetValues(mat_elemental,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1138     for (j=0; j<ncols; j++) { /* lower triangular part */
1139       if (cols[j] == row) continue;
1140       ierr = MatSetValues(mat_elemental,1,&cols[j],1,&row,&vals[j],ADD_VALUES);CHKERRQ(ierr);
1141     }
1142     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1143   }
1144   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
1145   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1146   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1147 
1148   if (reuse == MAT_INPLACE_MATRIX) {
1149     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
1150   } else {
1151     *newmat = mat_elemental;
1152   }
1153   PetscFunctionReturn(0);
1154 }
1155 
1156 #undef __FUNCT__
1157 #define __FUNCT__ "MatConvert_MPISBAIJ_Elemental"
1158 PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
1159 {
1160   Mat               mat_elemental;
1161   PetscErrorCode    ierr;
1162   PetscInt          M=A->rmap->N,N=A->cmap->N,row,ncols,j,rstart=A->rmap->rstart,rend=A->rmap->rend;
1163   const PetscInt    *cols;
1164   const PetscScalar *vals;
1165 
1166   PetscFunctionBegin;
1167   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1168   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1169   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1170   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
1171   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
1172   for (row=rstart; row<rend; row++) {
1173     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1174     /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
1175     ierr = MatSetValues(mat_elemental,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1176     for (j=0; j<ncols; j++) { /* lower triangular part */
1177       if (cols[j] == row) continue;
1178       ierr = MatSetValues(mat_elemental,1,&cols[j],1,&row,&vals[j],ADD_VALUES);CHKERRQ(ierr);
1179     }
1180     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
1181   }
1182   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
1183   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1184   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1185 
1186   if (reuse == MAT_INPLACE_MATRIX) {
1187     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
1188   } else {
1189     *newmat = mat_elemental;
1190   }
1191   PetscFunctionReturn(0);
1192 }
1193 
1194 #undef __FUNCT__
1195 #define __FUNCT__ "MatDestroy_Elemental"
1196 static PetscErrorCode MatDestroy_Elemental(Mat A)
1197 {
1198   Mat_Elemental      *a = (Mat_Elemental*)A->data;
1199   PetscErrorCode     ierr;
1200   Mat_Elemental_Grid *commgrid;
1201   PetscBool          flg;
1202   MPI_Comm           icomm;
1203 
1204   PetscFunctionBegin;
1205   delete a->emat;
1206   delete a->pivot;
1207 
1208   El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A));
1209   ierr = PetscCommDuplicate(cxxcomm.comm,&icomm,NULL);CHKERRQ(ierr);
1210   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
1211   if (--commgrid->grid_refct == 0) {
1212     delete commgrid->grid;
1213     ierr = PetscFree(commgrid);CHKERRQ(ierr);
1214     ierr = MPI_Keyval_free(&Petsc_Elemental_keyval);CHKERRQ(ierr);
1215   }
1216   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
1217   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",NULL);CHKERRQ(ierr);
1218   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr);
1219   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHermitianGenDefEig_C",NULL);CHKERRQ(ierr);
1220   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalSyrk_C",NULL);CHKERRQ(ierr);
1221   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHerk_C",NULL);CHKERRQ(ierr);
1222   ierr = PetscFree(A->data);CHKERRQ(ierr);
1223   PetscFunctionReturn(0);
1224 }
1225 
1226 #undef __FUNCT__
1227 #define __FUNCT__ "MatSetUp_Elemental"
1228 PetscErrorCode MatSetUp_Elemental(Mat A)
1229 {
1230   Mat_Elemental  *a = (Mat_Elemental*)A->data;
1231   PetscErrorCode ierr;
1232   PetscMPIInt    rsize,csize;
1233 
1234   PetscFunctionBegin;
1235   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
1236   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
1237 
1238   a->emat->Resize(A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1239   El::Zero(*a->emat);
1240 
1241   ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr);
1242   ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr);
1243   if (csize != rsize) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes");
1244   a->commsize = rsize;
1245   a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize;
1246   a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize;
1247   a->m[0]  = A->rmap->N / rsize + (a->mr[0] != rsize);
1248   a->m[1]  = A->cmap->N / csize + (a->mr[1] != csize);
1249   PetscFunctionReturn(0);
1250 }
1251 
1252 #undef __FUNCT__
1253 #define __FUNCT__ "MatAssemblyBegin_Elemental"
1254 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type)
1255 {
1256   Mat_Elemental  *a = (Mat_Elemental*)A->data;
1257 
1258   PetscFunctionBegin;
1259   /* printf("Calling ProcessQueues\n"); */
1260   a->emat->ProcessQueues();
1261   /* printf("Finished ProcessQueues\n"); */
1262   PetscFunctionReturn(0);
1263 }
1264 
1265 #undef __FUNCT__
1266 #define __FUNCT__ "MatAssemblyEnd_Elemental"
1267 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type)
1268 {
1269   PetscFunctionBegin;
1270   /* Currently does nothing */
1271   PetscFunctionReturn(0);
1272 }
1273 
1274 #undef __FUNCT__
1275 #define __FUNCT__ "MatLoad_Elemental"
1276 PetscErrorCode MatLoad_Elemental(Mat newMat, PetscViewer viewer)
1277 {
1278   PetscErrorCode ierr;
1279   Mat            Adense,Ae;
1280   MPI_Comm       comm;
1281 
1282   PetscFunctionBegin;
1283   ierr = PetscObjectGetComm((PetscObject)newMat,&comm);CHKERRQ(ierr);
1284   ierr = MatCreate(comm,&Adense);CHKERRQ(ierr);
1285   ierr = MatSetType(Adense,MATDENSE);CHKERRQ(ierr);
1286   ierr = MatLoad(Adense,viewer);CHKERRQ(ierr);
1287   ierr = MatConvert(Adense, MATELEMENTAL, MAT_INITIAL_MATRIX,&Ae);CHKERRQ(ierr);
1288   ierr = MatDestroy(&Adense);CHKERRQ(ierr);
1289   ierr = MatHeaderReplace(newMat,&Ae);CHKERRQ(ierr);
1290   PetscFunctionReturn(0);
1291 }
1292 
1293 #undef __FUNCT__
1294 #define __FUNCT__ "MatElementalHermitianGenDefEig_Elemental"
1295 PetscErrorCode MatElementalHermitianGenDefEig_Elemental(El::Pencil eigtype,El::UpperOrLower uplo,Mat A,Mat B,Mat *evals,Mat *evec,El::SortType sort,El::HermitianEigSubset<PetscElemScalar> subset,const El::HermitianEigCtrl<PetscElemScalar> ctrl)
1296 {
1297   PetscErrorCode ierr;
1298   Mat_Elemental  *a=(Mat_Elemental*)A->data,*b=(Mat_Elemental*)B->data,*x;
1299   MPI_Comm       comm;
1300   Mat            EVAL;
1301   Mat_Elemental  *e;
1302 
1303   PetscFunctionBegin;
1304   /* Compute eigenvalues and eigenvectors */
1305   El::DistMatrix<PetscElemScalar,El::VR,El::STAR> w( *a->grid ); /* holding eigenvalues */
1306   El::DistMatrix<PetscElemScalar>                 X( *a->grid ); /* holding eigenvectors */
1307   El::HermitianGenDefEig(eigtype,uplo,*a->emat,*b->emat,w,X,sort,subset,ctrl);
1308 
1309   /* Wrap w and X into PETSc's MATMATELEMENTAL matrices */
1310   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1311   ierr = MatCreate(comm,evec);CHKERRQ(ierr);
1312   ierr = MatSetSizes(*evec,PETSC_DECIDE,PETSC_DECIDE,X.Height(),X.Width());CHKERRQ(ierr);
1313   ierr = MatSetType(*evec,MATELEMENTAL);CHKERRQ(ierr);
1314   ierr = MatSetFromOptions(*evec);CHKERRQ(ierr);
1315   ierr = MatSetUp(*evec);CHKERRQ(ierr);
1316   ierr = MatAssemblyBegin(*evec,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1317   ierr = MatAssemblyEnd(*evec,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1318 
1319   x = (Mat_Elemental*)(*evec)->data;
1320   *x->emat = X;
1321 
1322   ierr = MatCreate(comm,&EVAL);CHKERRQ(ierr);
1323   ierr = MatSetSizes(EVAL,PETSC_DECIDE,PETSC_DECIDE,w.Height(),w.Width());CHKERRQ(ierr);
1324   ierr = MatSetType(EVAL,MATELEMENTAL);CHKERRQ(ierr);
1325   ierr = MatSetFromOptions(EVAL);CHKERRQ(ierr);
1326   ierr = MatSetUp(EVAL);CHKERRQ(ierr);
1327   ierr = MatAssemblyBegin(EVAL,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1328   ierr = MatAssemblyEnd(EVAL,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1329   e         = (Mat_Elemental*)EVAL->data;
1330   *e->emat = w;
1331   *evals   = EVAL;
1332   PetscFunctionReturn(0);
1333 }
1334 
1335 #undef __FUNCT__
1336 #define __FUNCT__ "MatElementalHermitianGenDefEig"
1337 /*@
1338   MatElementalHermitianGenDefEig - Compute the set of eigenvalues of the Hermitian-definite matrix pencil determined by the subset structure
1339 
1340    Logically Collective on Mat
1341 
1342    Level: beginner
1343 
1344    References:
1345 .      Elemental Users' Guide
1346 
1347 @*/
1348 PetscErrorCode MatElementalHermitianGenDefEig(El::Pencil type,El::UpperOrLower uplo,Mat A,Mat B,Mat *evals,Mat *evec,El::SortType sort,El::HermitianEigSubset<PetscElemScalar> subset,const El::HermitianEigCtrl<PetscElemScalar> ctrl)
1349 {
1350   PetscErrorCode ierr;
1351 
1352   PetscFunctionBegin;
1353   ierr = PetscUseMethod(A,"MatElementalHermitianGenDefEig_C",(El::Pencil,El::UpperOrLower,Mat,Mat,Mat*,Mat*,El::SortType,El::HermitianEigSubset<PetscElemScalar>,const El::HermitianEigCtrl<PetscElemScalar>),(type,uplo,A,B,evals,evec,sort,subset,ctrl));CHKERRQ(ierr);
1354   PetscFunctionReturn(0);
1355 }
1356 
1357 /* -------------------------------------------------------------------*/
1358 static struct _MatOps MatOps_Values = {
1359        MatSetValues_Elemental,
1360        0,
1361        0,
1362        MatMult_Elemental,
1363 /* 4*/ MatMultAdd_Elemental,
1364        MatMultTranspose_Elemental,
1365        MatMultTransposeAdd_Elemental,
1366        MatSolve_Elemental,
1367        MatSolveAdd_Elemental,
1368        0,
1369 /*10*/ 0,
1370        MatLUFactor_Elemental,
1371        MatCholeskyFactor_Elemental,
1372        0,
1373        MatTranspose_Elemental,
1374 /*15*/ MatGetInfo_Elemental,
1375        0,
1376        MatGetDiagonal_Elemental,
1377        MatDiagonalScale_Elemental,
1378        MatNorm_Elemental,
1379 /*20*/ MatAssemblyBegin_Elemental,
1380        MatAssemblyEnd_Elemental,
1381        MatSetOption_Elemental,
1382        MatZeroEntries_Elemental,
1383 /*24*/ 0,
1384        MatLUFactorSymbolic_Elemental,
1385        MatLUFactorNumeric_Elemental,
1386        MatCholeskyFactorSymbolic_Elemental,
1387        MatCholeskyFactorNumeric_Elemental,
1388 /*29*/ MatSetUp_Elemental,
1389        0,
1390        0,
1391        0,
1392        0,
1393 /*34*/ MatDuplicate_Elemental,
1394        0,
1395        0,
1396        0,
1397        0,
1398 /*39*/ MatAXPY_Elemental,
1399        0,
1400        0,
1401        0,
1402        MatCopy_Elemental,
1403 /*44*/ 0,
1404        MatScale_Elemental,
1405        MatShift_Basic,
1406        0,
1407        0,
1408 /*49*/ 0,
1409        0,
1410        0,
1411        0,
1412        0,
1413 /*54*/ 0,
1414        0,
1415        0,
1416        0,
1417        0,
1418 /*59*/ 0,
1419        MatDestroy_Elemental,
1420        MatView_Elemental,
1421        0,
1422        0,
1423 /*64*/ 0,
1424        0,
1425        0,
1426        0,
1427        0,
1428 /*69*/ 0,
1429        0,
1430        MatConvert_Elemental_Dense,
1431        0,
1432        0,
1433 /*74*/ 0,
1434        0,
1435        0,
1436        0,
1437        0,
1438 /*79*/ 0,
1439        0,
1440        0,
1441        0,
1442        MatLoad_Elemental,
1443 /*84*/ 0,
1444        0,
1445        0,
1446        0,
1447        0,
1448 /*89*/ MatMatMult_Elemental,
1449        MatMatMultSymbolic_Elemental,
1450        MatMatMultNumeric_Elemental,
1451        0,
1452        0,
1453 /*94*/ 0,
1454        MatMatTransposeMult_Elemental,
1455        MatMatTransposeMultSymbolic_Elemental,
1456        MatMatTransposeMultNumeric_Elemental,
1457        0,
1458 /*99*/ 0,
1459        0,
1460        0,
1461        MatConjugate_Elemental,
1462        0,
1463 /*104*/0,
1464        0,
1465        0,
1466        0,
1467        0,
1468 /*109*/MatMatSolve_Elemental,
1469        0,
1470        0,
1471        0,
1472        0,
1473 /*114*/0,
1474        0,
1475        0,
1476        0,
1477        0,
1478 /*119*/0,
1479        MatHermitianTranspose_Elemental,
1480        0,
1481        0,
1482        0,
1483 /*124*/0,
1484        0,
1485        0,
1486        0,
1487        0,
1488 /*129*/0,
1489        0,
1490        0,
1491        0,
1492        0,
1493 /*134*/0,
1494        0,
1495        0,
1496        0,
1497        0
1498 };
1499 
1500 /*MC
1501    MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package
1502 
1503   Use ./configure --download-elemental to install PETSc to use Elemental
1504 
1505   Use -pc_type lu -pc_factor_mat_solver_package elemental to us this direct solver
1506 
1507    Options Database Keys:
1508 + -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions()
1509 - -mat_elemental_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix
1510 
1511   Level: beginner
1512 
1513 .seealso: MATDENSE
1514 M*/
1515 
1516 #undef __FUNCT__
1517 #define __FUNCT__ "MatCreate_Elemental"
1518 PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A)
1519 {
1520   Mat_Elemental      *a;
1521   PetscErrorCode     ierr;
1522   PetscBool          flg,flg1;
1523   Mat_Elemental_Grid *commgrid;
1524   MPI_Comm           icomm;
1525   PetscInt           optv1;
1526 
1527   PetscFunctionBegin;
1528   ierr = PetscElementalInitializePackage();CHKERRQ(ierr);
1529   ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1530   A->insertmode = NOT_SET_VALUES;
1531 
1532   ierr = PetscNewLog(A,&a);CHKERRQ(ierr);
1533   A->data = (void*)a;
1534 
1535   /* Set up the elemental matrix */
1536   El::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A));
1537 
1538   /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */
1539   if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) {
1540     ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0);CHKERRQ(ierr);
1541     /* ierr = MPI_Comm_create_Keyval(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); -- new version? */
1542   }
1543   ierr = PetscCommDuplicate(cxxcomm.comm,&icomm,NULL);CHKERRQ(ierr);
1544   ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr);
1545   if (!flg) {
1546     ierr = PetscNewLog(A,&commgrid);CHKERRQ(ierr);
1547 
1548     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr);
1549     /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until El::Grid() is called */
1550     ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",El::mpi::Size(cxxcomm),&optv1,&flg1);CHKERRQ(ierr);
1551     if (flg1) {
1552       if (El::mpi::Size(cxxcomm) % optv1 != 0) {
1553         SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Grid Height %D must evenly divide CommSize %D",optv1,(PetscInt)El::mpi::Size(cxxcomm));
1554       }
1555       commgrid->grid = new El::Grid(cxxcomm,optv1); /* use user-provided grid height */
1556     } else {
1557       commgrid->grid = new El::Grid(cxxcomm); /* use Elemental default grid sizes */
1558       /* printf("new commgrid->grid = %p\n",commgrid->grid);  -- memory leak revealed by valgrind? */
1559     }
1560     commgrid->grid_refct = 1;
1561     ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr);
1562     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1563   } else {
1564     commgrid->grid_refct++;
1565   }
1566   ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr);
1567   a->grid      = commgrid->grid;
1568   a->emat      = new El::DistMatrix<PetscElemScalar>(*a->grid);
1569   a->pivot     = new El::DistMatrix<PetscInt,El::VC,El::STAR>(*a->grid);
1570   a->roworiented = PETSC_TRUE;
1571 
1572   ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",MatGetOwnershipIS_Elemental);CHKERRQ(ierr);
1573   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHermitianGenDefEig_C",MatElementalHermitianGenDefEig_Elemental);CHKERRQ(ierr);
1574   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalSyrk_C",MatElementalSyrk_Elemental);CHKERRQ(ierr);
1575   ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHerk_C",MatElementalHerk_Elemental);CHKERRQ(ierr);
1576 
1577 
1578   ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr);
1579   PetscFunctionReturn(0);
1580 }
1581