1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 /* Sets Elemental options from the options database */ 58 #undef __FUNCT__ 59 #define __FUNCT__ "PetscSetElementalFromOptions" 60 PetscErrorCode PetscSetElementalFromOptions(Mat A) 61 { 62 PetscErrorCode ierr; 63 64 PetscFunctionBegin; 65 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 66 PetscOptionsEnd(); 67 PetscFunctionReturn(0); 68 } 69 70 #undef __FUNCT__ 71 #define __FUNCT__ "MatView_Elemental" 72 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 73 { 74 PetscErrorCode ierr; 75 Mat_Elemental *a = (Mat_Elemental*)A->data; 76 PetscBool iascii; 77 78 PetscFunctionBegin; 79 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 80 if (iascii) { 81 PetscViewerFormat format; 82 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 83 if (format == PETSC_VIEWER_ASCII_INFO) { 84 /* call elemental viewing function */ 85 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 86 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 87 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 88 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 89 /* call elemental viewing function */ 90 ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 91 } 92 93 } else if (format == PETSC_VIEWER_DEFAULT) { 94 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 95 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 96 a->emat->Print("Elemental matrix (cyclic ordering)"); 97 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 98 if (A->factortype == MAT_FACTOR_NONE){ 99 Mat Aaij; 100 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 101 ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 102 ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 103 ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 104 } 105 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 106 } else { 107 /* convert to aij/mpidense format and call MatView() */ 108 Mat Aaij; 109 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 110 ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 111 ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 112 ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 113 } 114 PetscFunctionReturn(0); 115 } 116 117 #undef __FUNCT__ 118 #define __FUNCT__ "MatGetInfo_Elemental" 119 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 120 { 121 Mat_Elemental *a = (Mat_Elemental*)A->data; 122 PetscMPIInt rank; 123 124 PetscFunctionBegin; 125 MPI_Comm_rank(((PetscObject)A)->comm,&rank); 126 127 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 128 info->block_size = 1.0; /* ? */ 129 130 if (flag == MAT_LOCAL) { 131 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 132 info->nz_used = info->nz_allocated; 133 } else if (flag == MAT_GLOBAL_MAX) { 134 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 135 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 136 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 137 } else if (flag == MAT_GLOBAL_SUM) { 138 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 139 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 140 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 141 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 142 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 143 } 144 145 info->nz_unneeded = 0.0; 146 info->assemblies = (double)A->num_ass; 147 info->mallocs = 0; 148 info->memory = ((PetscObject)A)->mem; 149 info->fill_ratio_given = 0; /* determined by Elemental */ 150 info->fill_ratio_needed = 0; 151 info->factor_mallocs = 0; 152 PetscFunctionReturn(0); 153 } 154 155 #undef __FUNCT__ 156 #define __FUNCT__ "MatSetValues_Elemental" 157 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 158 { 159 PetscErrorCode ierr; 160 Mat_Elemental *a = (Mat_Elemental*)A->data; 161 PetscMPIInt rank; 162 PetscInt i,j,rrank,ridx,crank,cidx; 163 164 PetscFunctionBegin; 165 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 166 167 const elem::Grid &grid = a->emat->Grid(); 168 for (i=0; i<nr; i++) { 169 PetscInt erow,ecol,elrow,elcol; 170 if (rows[i] < 0) continue; 171 P2RO(A,0,rows[i],&rrank,&ridx); 172 RO2E(A,0,rrank,ridx,&erow); 173 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 174 for (j=0; j<nc; j++) { 175 if (cols[j] < 0) continue; 176 P2RO(A,1,cols[j],&crank,&cidx); 177 RO2E(A,1,crank,cidx,&ecol); 178 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 179 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 180 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 181 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 182 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 183 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 184 continue; 185 } 186 elrow = erow / grid.MCSize(); 187 elcol = ecol / grid.MRSize(); 188 switch (imode) { 189 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 190 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 191 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 192 } 193 } 194 } 195 PetscFunctionReturn(0); 196 } 197 198 #undef __FUNCT__ 199 #define __FUNCT__ "MatMult_Elemental" 200 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 201 { 202 Mat_Elemental *a = (Mat_Elemental*)A->data; 203 PetscErrorCode ierr; 204 const PetscElemScalar *x; 205 PetscElemScalar *y; 206 PetscElemScalar one = 1,zero = 0; 207 208 PetscFunctionBegin; 209 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 210 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 211 { /* Scoping so that constructor is called before pointer is returned */ 212 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 213 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 214 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 215 } 216 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 217 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 218 PetscFunctionReturn(0); 219 } 220 221 #undef __FUNCT__ 222 #define __FUNCT__ "MatMultTranspose_Elemental" 223 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 224 { 225 Mat_Elemental *a = (Mat_Elemental*)A->data; 226 PetscErrorCode ierr; 227 const PetscElemScalar *x; 228 PetscElemScalar *y; 229 PetscElemScalar one = 1,zero = 0; 230 231 PetscFunctionBegin; 232 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 233 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 234 { /* Scoping so that constructor is called before pointer is returned */ 235 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 236 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 237 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 238 } 239 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 240 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 241 PetscFunctionReturn(0); 242 } 243 244 #undef __FUNCT__ 245 #define __FUNCT__ "MatMultAdd_Elemental" 246 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 247 { 248 Mat_Elemental *a = (Mat_Elemental*)A->data; 249 PetscErrorCode ierr; 250 const PetscElemScalar *x; 251 PetscElemScalar *z; 252 PetscElemScalar one = 1; 253 254 PetscFunctionBegin; 255 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 256 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 257 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 258 { /* Scoping so that constructor is called before pointer is returned */ 259 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 260 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 261 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 262 } 263 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 264 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 265 PetscFunctionReturn(0); 266 } 267 268 #undef __FUNCT__ 269 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 270 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 271 { 272 Mat_Elemental *a = (Mat_Elemental*)A->data; 273 PetscErrorCode ierr; 274 const PetscElemScalar *x; 275 PetscElemScalar *z; 276 PetscElemScalar one = 1; 277 278 PetscFunctionBegin; 279 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 280 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 281 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 282 { /* Scoping so that constructor is called before pointer is returned */ 283 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 284 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 285 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 286 } 287 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 288 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 289 PetscFunctionReturn(0); 290 } 291 292 #undef __FUNCT__ 293 #define __FUNCT__ "MatMatMultNumeric_Elemental" 294 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 295 { 296 Mat_Elemental *a = (Mat_Elemental*)A->data; 297 Mat_Elemental *b = (Mat_Elemental*)B->data; 298 Mat_Elemental *c = (Mat_Elemental*)C->data; 299 PetscElemScalar one = 1,zero = 0; 300 301 PetscFunctionBegin; 302 { /* Scoping so that constructor is called before pointer is returned */ 303 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 304 } 305 C->assembled = PETSC_TRUE; 306 PetscFunctionReturn(0); 307 } 308 309 #undef __FUNCT__ 310 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 311 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 312 { 313 PetscErrorCode ierr; 314 Mat Ce; 315 MPI_Comm comm=((PetscObject)A)->comm; 316 317 PetscFunctionBegin; 318 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 319 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 320 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 321 ierr = MatSetUp(Ce);CHKERRQ(ierr); 322 *C = Ce; 323 PetscFunctionReturn(0); 324 } 325 326 #undef __FUNCT__ 327 #define __FUNCT__ "MatMatMult_Elemental" 328 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 329 { 330 PetscErrorCode ierr; 331 332 PetscFunctionBegin; 333 if (scall == MAT_INITIAL_MATRIX){ 334 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 335 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 336 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 337 } 338 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 339 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 340 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 341 PetscFunctionReturn(0); 342 } 343 344 #undef __FUNCT__ 345 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 346 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 347 { 348 Mat_Elemental *a = (Mat_Elemental*)A->data; 349 Mat_Elemental *b = (Mat_Elemental*)B->data; 350 Mat_Elemental *c = (Mat_Elemental*)C->data; 351 PetscElemScalar one = 1,zero = 0; 352 353 PetscFunctionBegin; 354 { /* Scoping so that constructor is called before pointer is returned */ 355 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 356 } 357 C->assembled = PETSC_TRUE; 358 PetscFunctionReturn(0); 359 } 360 361 #undef __FUNCT__ 362 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 363 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 364 { 365 PetscErrorCode ierr; 366 Mat Ce; 367 MPI_Comm comm=((PetscObject)A)->comm; 368 369 PetscFunctionBegin; 370 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 371 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 372 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 373 ierr = MatSetUp(Ce);CHKERRQ(ierr); 374 *C = Ce; 375 PetscFunctionReturn(0); 376 } 377 378 #undef __FUNCT__ 379 #define __FUNCT__ "MatMatTransposeMult_Elemental" 380 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 381 { 382 PetscErrorCode ierr; 383 384 PetscFunctionBegin; 385 if (scall == MAT_INITIAL_MATRIX){ 386 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 387 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 388 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 389 } 390 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 391 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 392 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 393 PetscFunctionReturn(0); 394 } 395 396 #undef __FUNCT__ 397 #define __FUNCT__ "MatScale_Elemental" 398 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 399 { 400 Mat_Elemental *x = (Mat_Elemental*)X->data; 401 402 PetscFunctionBegin; 403 elem::Scal((PetscElemScalar)a,*x->emat); 404 PetscFunctionReturn(0); 405 } 406 407 #undef __FUNCT__ 408 #define __FUNCT__ "MatAXPY_Elemental" 409 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 410 { 411 Mat_Elemental *x = (Mat_Elemental*)X->data; 412 Mat_Elemental *y = (Mat_Elemental*)Y->data; 413 414 PetscFunctionBegin; 415 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 416 PetscFunctionReturn(0); 417 } 418 419 #undef __FUNCT__ 420 #define __FUNCT__ "MatCopy_Elemental" 421 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 422 { 423 Mat_Elemental *a=(Mat_Elemental*)A->data; 424 Mat_Elemental *b=(Mat_Elemental*)B->data; 425 426 PetscFunctionBegin; 427 elem::Copy(*a->emat,*b->emat); 428 PetscFunctionReturn(0); 429 } 430 431 #undef __FUNCT__ 432 #define __FUNCT__ "MatDuplicate_Elemental" 433 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 434 { 435 Mat Be; 436 MPI_Comm comm=((PetscObject)A)->comm; 437 Mat_Elemental *a=(Mat_Elemental*)A->data; 438 PetscErrorCode ierr; 439 440 PetscFunctionBegin; 441 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 442 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 443 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 444 ierr = MatSetUp(Be);CHKERRQ(ierr); 445 *B = Be; 446 if (op == MAT_COPY_VALUES) { 447 Mat_Elemental *b=(Mat_Elemental*)Be->data; 448 elem::Copy(*a->emat,*b->emat); 449 } 450 Be->assembled = PETSC_TRUE; 451 PetscFunctionReturn(0); 452 } 453 454 #undef __FUNCT__ 455 #define __FUNCT__ "MatTranspose_Elemental" 456 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 457 { 458 /* Only out-of-place supported */ 459 Mat Be; 460 PetscErrorCode ierr; 461 MPI_Comm comm=((PetscObject)A)->comm; 462 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 463 464 PetscFunctionBegin; 465 if (reuse == MAT_INITIAL_MATRIX){ 466 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 467 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 468 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 469 ierr = MatSetUp(Be);CHKERRQ(ierr); 470 *B = Be; 471 } 472 b = (Mat_Elemental*)Be->data; 473 elem::Transpose(*a->emat,*b->emat); 474 Be->assembled = PETSC_TRUE; 475 PetscFunctionReturn(0); 476 } 477 478 #undef __FUNCT__ 479 #define __FUNCT__ "MatConjugate_Elemental" 480 static PetscErrorCode MatConjugate_Elemental(Mat A) 481 { 482 Mat_Elemental *a = (Mat_Elemental*)A->data; 483 484 PetscFunctionBegin; 485 elem::Conjugate(*a->emat); 486 PetscFunctionReturn(0); 487 } 488 489 #undef __FUNCT__ 490 #define __FUNCT__ "MatSolve_Elemental" 491 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 492 { 493 Mat_Elemental *a = (Mat_Elemental*)A->data; 494 PetscErrorCode ierr; 495 PetscElemScalar *x; 496 497 PetscFunctionBegin; 498 ierr = VecCopy(B,X);CHKERRQ(ierr); 499 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 500 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 501 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 502 switch (A->factortype) { 503 case MAT_FACTOR_LU: 504 if ((*a->pivot).AllocatedMemory()) { 505 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 506 elem::Copy(xer,xe); 507 } else { 508 elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 509 elem::Copy(xer,xe); 510 } 511 break; 512 case MAT_FACTOR_CHOLESKY: 513 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 514 elem::Copy(xer,xe); 515 break; 516 default: 517 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 518 break; 519 } 520 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 521 PetscFunctionReturn(0); 522 } 523 524 #undef __FUNCT__ 525 #define __FUNCT__ "MatSolveAdd_Elemental" 526 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 527 { 528 PetscErrorCode ierr; 529 530 PetscFunctionBegin; 531 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 532 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 533 PetscFunctionReturn(0); 534 } 535 536 #undef __FUNCT__ 537 #define __FUNCT__ "MatMatSolve_Elemental" 538 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 539 { 540 Mat_Elemental *a=(Mat_Elemental*)A->data; 541 Mat_Elemental *b=(Mat_Elemental*)B->data; 542 Mat_Elemental *x=(Mat_Elemental*)X->data; 543 544 PetscFunctionBegin; 545 elem::Copy(*b->emat,*x->emat); 546 switch (A->factortype) { 547 case MAT_FACTOR_LU: 548 if ((*a->pivot).AllocatedMemory()) { 549 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 550 } else { 551 elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 552 } 553 break; 554 case MAT_FACTOR_CHOLESKY: 555 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 556 break; 557 default: 558 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 559 break; 560 } 561 PetscFunctionReturn(0); 562 } 563 564 #undef __FUNCT__ 565 #define __FUNCT__ "MatLUFactor_Elemental" 566 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 567 { 568 Mat_Elemental *a = (Mat_Elemental*)A->data; 569 570 PetscFunctionBegin; 571 if (info->dtcol){ 572 elem::LU(*a->emat,*a->pivot); 573 } else { 574 elem::LU(*a->emat); 575 } 576 A->factortype = MAT_FACTOR_LU; 577 A->assembled = PETSC_TRUE; 578 PetscFunctionReturn(0); 579 } 580 581 #undef __FUNCT__ 582 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 583 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 584 { 585 PetscErrorCode ierr; 586 587 PetscFunctionBegin; 588 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 589 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 590 PetscFunctionReturn(0); 591 } 592 593 #undef __FUNCT__ 594 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 595 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 596 { 597 PetscFunctionBegin; 598 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 599 PetscFunctionReturn(0); 600 } 601 602 #undef __FUNCT__ 603 #define __FUNCT__ "MatCholeskyFactor_Elemental" 604 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 605 { 606 Mat_Elemental *a = (Mat_Elemental*)A->data; 607 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 608 609 PetscFunctionBegin; 610 elem::Cholesky(elem::UPPER,*a->emat); 611 A->factortype = MAT_FACTOR_CHOLESKY; 612 A->assembled = PETSC_TRUE; 613 PetscFunctionReturn(0); 614 } 615 616 #undef __FUNCT__ 617 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 618 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 619 { 620 PetscErrorCode ierr; 621 622 PetscFunctionBegin; 623 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 624 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 625 PetscFunctionReturn(0); 626 } 627 628 #undef __FUNCT__ 629 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 630 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 631 { 632 PetscFunctionBegin; 633 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 634 PetscFunctionReturn(0); 635 } 636 637 EXTERN_C_BEGIN 638 #undef __FUNCT__ 639 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 640 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 641 { 642 PetscFunctionBegin; 643 *type = MATSOLVERELEMENTAL; 644 PetscFunctionReturn(0); 645 } 646 EXTERN_C_END 647 648 EXTERN_C_BEGIN 649 #undef __FUNCT__ 650 #define __FUNCT__ "MatGetFactor_elemental_elemental" 651 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 652 { 653 Mat B; 654 PetscErrorCode ierr; 655 656 PetscFunctionBegin; 657 /* Create the factorization matrix */ 658 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 659 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 660 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 661 ierr = MatSetUp(B);CHKERRQ(ierr); 662 B->factortype = ftype; 663 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 664 *F = B; 665 PetscFunctionReturn(0); 666 } 667 EXTERN_C_END 668 669 #undef __FUNCT__ 670 #define __FUNCT__ "MatNorm_Elemental" 671 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 672 { 673 Mat_Elemental *a=(Mat_Elemental*)A->data; 674 675 PetscFunctionBegin; 676 switch (type){ 677 case NORM_1: 678 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 679 break; 680 case NORM_FROBENIUS: 681 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 682 break; 683 case NORM_INFINITY: 684 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 685 break; 686 default: 687 printf("Error: unsupported norm type!\n"); 688 } 689 PetscFunctionReturn(0); 690 } 691 692 #undef __FUNCT__ 693 #define __FUNCT__ "MatZeroEntries_Elemental" 694 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 695 { 696 Mat_Elemental *a=(Mat_Elemental*)A->data; 697 698 PetscFunctionBegin; 699 elem::Zero(*a->emat); 700 PetscFunctionReturn(0); 701 } 702 703 EXTERN_C_BEGIN 704 #undef __FUNCT__ 705 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 706 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 707 { 708 Mat_Elemental *a = (Mat_Elemental*)A->data; 709 PetscErrorCode ierr; 710 PetscInt i,m,shift,stride,*idx; 711 712 PetscFunctionBegin; 713 if (rows) { 714 m = a->emat->LocalHeight(); 715 shift = a->emat->ColShift(); 716 stride = a->emat->ColStride(); 717 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 718 for (i=0; i<m; i++) { 719 PetscInt rank,offset; 720 E2RO(A,0,shift+i*stride,&rank,&offset); 721 RO2P(A,0,rank,offset,&idx[i]); 722 } 723 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 724 } 725 if (cols) { 726 m = a->emat->LocalWidth(); 727 shift = a->emat->RowShift(); 728 stride = a->emat->RowStride(); 729 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 730 for (i=0; i<m; i++) { 731 PetscInt rank,offset; 732 E2RO(A,1,shift+i*stride,&rank,&offset); 733 RO2P(A,1,rank,offset,&idx[i]); 734 } 735 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 736 } 737 PetscFunctionReturn(0); 738 } 739 EXTERN_C_END 740 741 #undef __FUNCT__ 742 #define __FUNCT__ "MatConvert_Elemental_Dense" 743 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B) 744 { 745 Mat Bmpi; 746 Mat_Elemental *a = (Mat_Elemental*)A->data; 747 MPI_Comm comm=((PetscObject)A)->comm; 748 PetscErrorCode ierr; 749 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 750 PetscElemScalar v; 751 752 PetscFunctionBegin; 753 if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 754 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 755 } 756 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 757 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 758 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 759 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 760 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 761 for (i=0; i<nrows; i++) { 762 PetscInt erow,ecol; 763 P2RO(A,0,i,&rrank,&ridx); 764 RO2E(A,0,rrank,ridx,&erow); 765 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 766 for (j=0; j<ncols; j++) { 767 P2RO(A,1,j,&crank,&cidx); 768 RO2E(A,1,crank,cidx,&ecol); 769 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 770 v = a->emat->Get(erow,ecol); 771 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 772 } 773 } 774 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 775 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 776 if (reuse == MAT_REUSE_MATRIX) { 777 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 778 } else { 779 *B = Bmpi; 780 } 781 PetscFunctionReturn(0); 782 } 783 784 #undef __FUNCT__ 785 #define __FUNCT__ "MatDestroy_Elemental" 786 static PetscErrorCode MatDestroy_Elemental(Mat A) 787 { 788 Mat_Elemental *a = (Mat_Elemental*)A->data; 789 PetscErrorCode ierr; 790 Mat_Elemental_Grid *commgrid; 791 PetscBool flg; 792 MPI_Comm icomm; 793 794 PetscFunctionBegin; 795 a->interface->Detach(); 796 delete a->interface; 797 delete a->esubmat; 798 delete a->emat; 799 800 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 801 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 802 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 803 if (--commgrid->grid_refct == 0) { 804 delete commgrid->grid; 805 ierr = PetscFree(commgrid);CHKERRQ(ierr); 806 } 807 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 808 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 809 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 810 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 811 ierr = PetscFree(A->data);CHKERRQ(ierr); 812 PetscFunctionReturn(0); 813 } 814 815 #undef __FUNCT__ 816 #define __FUNCT__ "MatSetUp_Elemental" 817 PetscErrorCode MatSetUp_Elemental(Mat A) 818 { 819 Mat_Elemental *a = (Mat_Elemental*)A->data; 820 PetscErrorCode ierr; 821 PetscMPIInt rsize,csize; 822 823 PetscFunctionBegin; 824 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 825 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 826 827 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 828 elem::Zero(*a->emat); 829 830 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 831 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 832 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 833 a->commsize = rsize; 834 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 835 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 836 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 837 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 838 PetscFunctionReturn(0); 839 } 840 841 #undef __FUNCT__ 842 #define __FUNCT__ "MatAssemblyBegin_Elemental" 843 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 844 { 845 Mat_Elemental *a = (Mat_Elemental*)A->data; 846 847 PetscFunctionBegin; 848 a->interface->Detach(); 849 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 850 PetscFunctionReturn(0); 851 } 852 853 #undef __FUNCT__ 854 #define __FUNCT__ "MatAssemblyEnd_Elemental" 855 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 856 { 857 PetscFunctionBegin; 858 /* Currently does nothing */ 859 PetscFunctionReturn(0); 860 } 861 862 /* -------------------------------------------------------------------*/ 863 static struct _MatOps MatOps_Values = { 864 MatSetValues_Elemental, 865 0, 866 0, 867 MatMult_Elemental, 868 /* 4*/ MatMultAdd_Elemental, 869 MatMultTranspose_Elemental, 870 MatMultTransposeAdd_Elemental, 871 MatSolve_Elemental, 872 MatSolveAdd_Elemental, 873 0, //MatSolveTranspose_Elemental, 874 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 875 MatLUFactor_Elemental, 876 MatCholeskyFactor_Elemental, 877 0, 878 MatTranspose_Elemental, 879 /*15*/ MatGetInfo_Elemental, 880 0, 881 0, 882 0, 883 MatNorm_Elemental, 884 /*20*/ MatAssemblyBegin_Elemental, 885 MatAssemblyEnd_Elemental, 886 0, //MatSetOption_Elemental, 887 MatZeroEntries_Elemental, 888 /*24*/ 0, 889 MatLUFactorSymbolic_Elemental, 890 MatLUFactorNumeric_Elemental, 891 MatCholeskyFactorSymbolic_Elemental, 892 MatCholeskyFactorNumeric_Elemental, 893 /*29*/ MatSetUp_Elemental, 894 0, 895 0, 896 0, 897 0, 898 /*34*/ MatDuplicate_Elemental, 899 0, 900 0, 901 0, 902 0, 903 /*39*/ MatAXPY_Elemental, 904 0, 905 0, 906 0, 907 MatCopy_Elemental, 908 /*44*/ 0, 909 MatScale_Elemental, 910 0, 911 0, 912 0, 913 /*49*/ 0, 914 0, 915 0, 916 0, 917 0, 918 /*54*/ 0, 919 0, 920 0, 921 0, 922 0, 923 /*59*/ 0, 924 MatDestroy_Elemental, 925 MatView_Elemental, 926 0, 927 0, 928 /*64*/ 0, 929 0, 930 0, 931 0, 932 0, 933 /*69*/ 0, 934 0, 935 MatConvert_Elemental_Dense, 936 0, 937 0, 938 /*74*/ 0, 939 0, 940 0, 941 0, 942 0, 943 /*79*/ 0, 944 0, 945 0, 946 0, 947 0, 948 /*84*/ 0, 949 0, 950 0, 951 0, 952 0, 953 /*89*/ MatMatMult_Elemental, 954 MatMatMultSymbolic_Elemental, 955 MatMatMultNumeric_Elemental, 956 0, 957 0, 958 /*94*/ 0, 959 MatMatTransposeMult_Elemental, 960 MatMatTransposeMultSymbolic_Elemental, 961 MatMatTransposeMultNumeric_Elemental, 962 0, 963 /*99*/ 0, 964 0, 965 0, 966 MatConjugate_Elemental, 967 0, 968 /*104*/0, 969 0, 970 0, 971 0, 972 0, 973 /*109*/MatMatSolve_Elemental, 974 0, 975 0, 976 0, 977 0, 978 /*114*/0, 979 0, 980 0, 981 0, 982 0, 983 /*119*/0, 984 0, 985 0, 986 0, 987 0, 988 /*124*/0, 989 0, 990 0, 991 0, 992 0, 993 /*129*/0, 994 0, 995 0, 996 0, 997 0, 998 /*134*/0, 999 0, 1000 0, 1001 0, 1002 0 1003 }; 1004 1005 /*MC 1006 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1007 1008 Options Database Keys: 1009 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1010 1011 Level: beginner 1012 1013 .seealso: MATDENSE,MatCreateElemental() 1014 M*/ 1015 EXTERN_C_BEGIN 1016 #undef __FUNCT__ 1017 #define __FUNCT__ "MatCreate_Elemental" 1018 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1019 { 1020 Mat_Elemental *a; 1021 PetscErrorCode ierr; 1022 PetscBool flg,flg1,flg2; 1023 Mat_Elemental_Grid *commgrid; 1024 MPI_Comm icomm; 1025 PetscInt optv1,optv2; 1026 1027 PetscFunctionBegin; 1028 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1029 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1030 A->insertmode = NOT_SET_VALUES; 1031 1032 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1033 A->data = (void*)a; 1034 1035 /* Set up the elemental matrix */ 1036 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1037 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1038 1039 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1040 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1041 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1042 } 1043 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 1044 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1045 if (!flg) { 1046 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 1047 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1048 ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1049 if (flg1 || flg2) { 1050 if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 1051 SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1052 } 1053 commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); 1054 } else { 1055 commgrid->grid = new elem::Grid(cxxcomm); 1056 } 1057 commgrid->grid_refct = 1; 1058 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1059 } else { 1060 commgrid->grid_refct++; 1061 } 1062 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1063 a->grid = commgrid->grid; 1064 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1065 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1066 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1067 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1068 1069 /* build cache for off array entries formed */ 1070 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1071 1072 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1073 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1074 1075 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1076 PetscOptionsEnd(); 1077 PetscFunctionReturn(0); 1078 } 1079 EXTERN_C_END 1080