1b2b77a04SHong Zhang 2b2b77a04SHong Zhang /* 3b2b77a04SHong Zhang Provides an interface to the FFTW package. 4b2b77a04SHong Zhang Testing examples can be found in ~src/mat/examples/tests 5b2b77a04SHong Zhang */ 6b2b77a04SHong Zhang 7c6db04a5SJed Brown #include <../src/mat/impls/fft/fft.h> /*I "petscmat.h" I*/ 8b2b77a04SHong Zhang EXTERN_C_BEGIN 9c6db04a5SJed Brown #include <fftw3-mpi.h> 10b2b77a04SHong Zhang EXTERN_C_END 11b2b77a04SHong Zhang 12b2b77a04SHong Zhang typedef struct { 13b9ae062cSHong Zhang ptrdiff_t ndim_fftw,*dim_fftw; 14e5d7f247SAmlan Barua PetscInt partial_dim; 15b2b77a04SHong Zhang fftw_plan p_forward,p_backward; 16b2b77a04SHong Zhang unsigned p_flag; /* planner flags, FFTW_ESTIMATE,FFTW_MEASURE, FFTW_PATIENT, FFTW_EXHAUSTIVE */ 17b2b77a04SHong Zhang PetscScalar *finarray,*foutarray,*binarray,*boutarray; /* keep track of arrays becaue fftw plan should be 18b2b77a04SHong Zhang executed for the arrays with which the plan was created */ 19b2b77a04SHong Zhang } Mat_FFTW; 20b2b77a04SHong Zhang 21b2b77a04SHong Zhang extern PetscErrorCode MatMult_SeqFFTW(Mat,Vec,Vec); 22b2b77a04SHong Zhang extern PetscErrorCode MatMultTranspose_SeqFFTW(Mat,Vec,Vec); 23b2b77a04SHong Zhang extern PetscErrorCode MatMult_MPIFFTW(Mat,Vec,Vec); 24b2b77a04SHong Zhang extern PetscErrorCode MatMultTranspose_MPIFFTW(Mat,Vec,Vec); 25b2b77a04SHong Zhang extern PetscErrorCode MatDestroy_FFTW(Mat); 26b2b77a04SHong Zhang extern PetscErrorCode VecDestroy_MPIFFTW(Vec); 27b2b77a04SHong Zhang extern PetscErrorCode MatGetVecs_FFTW(Mat,Vec*,Vec*); 28b2b77a04SHong Zhang 29b2b77a04SHong Zhang #undef __FUNCT__ 30b2b77a04SHong Zhang #define __FUNCT__ "MatMult_SeqFFTW" 31b2b77a04SHong Zhang PetscErrorCode MatMult_SeqFFTW(Mat A,Vec x,Vec y) 32b2b77a04SHong Zhang { 33b2b77a04SHong Zhang PetscErrorCode ierr; 34b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 35b2b77a04SHong Zhang Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 36b2b77a04SHong Zhang PetscScalar *x_array,*y_array; 37b2b77a04SHong Zhang PetscInt ndim=fft->ndim,*dim=fft->dim; 38b2b77a04SHong Zhang 39b2b77a04SHong Zhang PetscFunctionBegin; 40*58a912c5SAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 41b9ae062cSHong Zhang 42*58a912c5SAmlan Barua // SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 43*58a912c5SAmlan Barua //#endif 44b2b77a04SHong Zhang ierr = VecGetArray(x,&x_array);CHKERRQ(ierr); 45b2b77a04SHong Zhang ierr = VecGetArray(y,&y_array);CHKERRQ(ierr); 46b2b77a04SHong Zhang if (!fftw->p_forward){ /* create a plan, then excute it */ 47b2b77a04SHong Zhang switch (ndim){ 48b2b77a04SHong Zhang case 1: 49*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 50b2b77a04SHong Zhang fftw->p_forward = fftw_plan_dft_1d(dim[0],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_FORWARD,fftw->p_flag); 51*58a912c5SAmlan Barua #else 52*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_r2c_1d(dim[0],(double *)x_array,(fftw_complex*)y_array,fftw->p_flag); 53*58a912c5SAmlan Barua #endif 54b2b77a04SHong Zhang break; 55b2b77a04SHong Zhang case 2: 56*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 57b2b77a04SHong Zhang fftw->p_forward = fftw_plan_dft_2d(dim[0],dim[1],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_FORWARD,fftw->p_flag); 58*58a912c5SAmlan Barua #else 59*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_r2c_2d(dim[0],dim[1],(double *)x_array,(fftw_complex*)y_array,fftw->p_flag); 60*58a912c5SAmlan Barua #endif 61b2b77a04SHong Zhang break; 62b2b77a04SHong Zhang case 3: 63*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 64b2b77a04SHong Zhang fftw->p_forward = fftw_plan_dft_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_FORWARD,fftw->p_flag); 65*58a912c5SAmlan Barua #else 66*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_r2c_3d(dim[0],dim[1],dim[2],(double *)x_array,(fftw_complex*)y_array,fftw->p_flag); 67*58a912c5SAmlan Barua #endif 68b2b77a04SHong Zhang break; 69b2b77a04SHong Zhang default: 70*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 71b2b77a04SHong Zhang fftw->p_forward = fftw_plan_dft(ndim,dim,(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_FORWARD,fftw->p_flag); 72*58a912c5SAmlan Barua #else 73*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_r2c(ndim,dim,(double *)x_array,(fftw_complex*)y_array,fftw->p_flag); 74*58a912c5SAmlan Barua #endif 75b2b77a04SHong Zhang break; 76b2b77a04SHong Zhang } 77b2b77a04SHong Zhang fftw->finarray = x_array; 78b2b77a04SHong Zhang fftw->foutarray = y_array; 79b2b77a04SHong Zhang /* Warning: if (fftw->p_flag!==FFTW_ESTIMATE) The data in the in/out arrays is overwritten! 80b2b77a04SHong Zhang planning should be done before x is initialized! See FFTW manual sec2.1 or sec4 */ 81b2b77a04SHong Zhang fftw_execute(fftw->p_forward); 82b2b77a04SHong Zhang } else { /* use existing plan */ 83b2b77a04SHong Zhang if (fftw->finarray != x_array || fftw->foutarray != y_array){ /* use existing plan on new arrays */ 84b2b77a04SHong Zhang fftw_execute_dft(fftw->p_forward,(fftw_complex*)x_array,(fftw_complex*)y_array); 85b2b77a04SHong Zhang } else { 86b2b77a04SHong Zhang fftw_execute(fftw->p_forward); 87b2b77a04SHong Zhang } 88b2b77a04SHong Zhang } 89b2b77a04SHong Zhang ierr = VecRestoreArray(y,&y_array);CHKERRQ(ierr); 90b2b77a04SHong Zhang ierr = VecRestoreArray(x,&x_array);CHKERRQ(ierr); 91b2b77a04SHong Zhang PetscFunctionReturn(0); 92b2b77a04SHong Zhang } 93b2b77a04SHong Zhang 94b2b77a04SHong Zhang #undef __FUNCT__ 95b2b77a04SHong Zhang #define __FUNCT__ "MatMultTranspose_SeqFFTW" 96b2b77a04SHong Zhang PetscErrorCode MatMultTranspose_SeqFFTW(Mat A,Vec x,Vec y) 97b2b77a04SHong Zhang { 98b2b77a04SHong Zhang PetscErrorCode ierr; 99b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 100b2b77a04SHong Zhang Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 101b2b77a04SHong Zhang PetscScalar *x_array,*y_array; 102b2b77a04SHong Zhang PetscInt ndim=fft->ndim,*dim=fft->dim; 103b2b77a04SHong Zhang 104b2b77a04SHong Zhang PetscFunctionBegin; 105b2b77a04SHong Zhang #if !defined(PETSC_USE_COMPLEX) 106b2b77a04SHong Zhang SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 107b2b77a04SHong Zhang #endif 108b2b77a04SHong Zhang ierr = VecGetArray(x,&x_array);CHKERRQ(ierr); 109b2b77a04SHong Zhang ierr = VecGetArray(y,&y_array);CHKERRQ(ierr); 110b2b77a04SHong Zhang if (!fftw->p_backward){ /* create a plan, then excute it */ 111b2b77a04SHong Zhang switch (ndim){ 112b2b77a04SHong Zhang case 1: 113*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 114b2b77a04SHong Zhang fftw->p_backward = fftw_plan_dft_1d(dim[0],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_BACKWARD,fftw->p_flag); 115*58a912c5SAmlan Barua #else 116*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_c2r_1d(dim[0],(fftw_complex*)x_array,(double *)y_array,fftw->p_flag); 117*58a912c5SAmlan Barua #endif 118b2b77a04SHong Zhang break; 119b2b77a04SHong Zhang case 2: 120*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 121b2b77a04SHong Zhang fftw->p_backward = fftw_plan_dft_2d(dim[0],dim[1],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_BACKWARD,fftw->p_flag); 122*58a912c5SAmlan Barua #else 123*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_c2r_2d(dim[0],dim[1],(fftw_complex*)x_array,(double *)y_array,fftw->p_flag); 124*58a912c5SAmlan Barua #endif 125b2b77a04SHong Zhang break; 126b2b77a04SHong Zhang case 3: 127*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 128b2b77a04SHong Zhang fftw->p_backward = fftw_plan_dft_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_BACKWARD,fftw->p_flag); 129*58a912c5SAmlan Barua #else 130*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_c2r_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(double *)y_array,fftw->p_flag); 131*58a912c5SAmlan Barua #endif 132b2b77a04SHong Zhang break; 133b2b77a04SHong Zhang default: 134*58a912c5SAmlan Barua #if defined(PETSC_USE_COMPLEX) 135b2b77a04SHong Zhang fftw->p_backward = fftw_plan_dft(ndim,dim,(fftw_complex*)x_array,(fftw_complex*)y_array,FFTW_BACKWARD,fftw->p_flag); 136*58a912c5SAmlan Barua #else 137*58a912c5SAmlan Barua fftw->p_forward = fftw_plan_dft_c2r(ndim,dim,(fftw_complex*)x_array,(double *)y_array,fftw->p_flag); 138*58a912c5SAmlan Barua #endif 139b2b77a04SHong Zhang break; 140b2b77a04SHong Zhang } 141b2b77a04SHong Zhang fftw->binarray = x_array; 142b2b77a04SHong Zhang fftw->boutarray = y_array; 143b2b77a04SHong Zhang fftw_execute(fftw->p_backward);CHKERRQ(ierr); 144b2b77a04SHong Zhang } else { /* use existing plan */ 145b2b77a04SHong Zhang if (fftw->binarray != x_array || fftw->boutarray != y_array){ /* use existing plan on new arrays */ 146b2b77a04SHong Zhang fftw_execute_dft(fftw->p_backward,(fftw_complex*)x_array,(fftw_complex*)y_array); 147b2b77a04SHong Zhang } else { 148b2b77a04SHong Zhang fftw_execute(fftw->p_backward);CHKERRQ(ierr); 149b2b77a04SHong Zhang } 150b2b77a04SHong Zhang } 151b2b77a04SHong Zhang ierr = VecRestoreArray(y,&y_array);CHKERRQ(ierr); 152b2b77a04SHong Zhang ierr = VecRestoreArray(x,&x_array);CHKERRQ(ierr); 153b2b77a04SHong Zhang PetscFunctionReturn(0); 154b2b77a04SHong Zhang } 155b2b77a04SHong Zhang 156b2b77a04SHong Zhang #undef __FUNCT__ 157b2b77a04SHong Zhang #define __FUNCT__ "MatMult_MPIFFTW" 158b2b77a04SHong Zhang PetscErrorCode MatMult_MPIFFTW(Mat A,Vec x,Vec y) 159b2b77a04SHong Zhang { 160b2b77a04SHong Zhang PetscErrorCode ierr; 161b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 162b2b77a04SHong Zhang Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 163b2b77a04SHong Zhang PetscScalar *x_array,*y_array; 164c92418ccSAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim; 165b2b77a04SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 166c92418ccSAmlan Barua // PetscInt ctr; 167c92418ccSAmlan Barua // ptrdiff_t ndim1=(ptrdiff_t) ndim,*pdim; 168c92418ccSAmlan Barua // ndim1=(ptrdiff_t) ndim; 169c92418ccSAmlan Barua // pdim = (ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 170c92418ccSAmlan Barua 171c92418ccSAmlan Barua // for(ctr=0;ctr<ndim;ctr++) 172c92418ccSAmlan Barua // { 173c92418ccSAmlan Barua // pdim[ctr] = dim[ctr]; 174c92418ccSAmlan Barua // } 175b2b77a04SHong Zhang 176b2b77a04SHong Zhang PetscFunctionBegin; 1775b3e41ffSAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 1785b3e41ffSAmlan Barua // SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 1795b3e41ffSAmlan Barua //#endif 180c92418ccSAmlan Barua // pdim = (ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 181c92418ccSAmlan Barua // for (ctr=0; ctr<ndim; ctr++) pdim[ctr] = dim[ctr]; 18211902ff2SHong Zhang 183b2b77a04SHong Zhang ierr = VecGetArray(x,&x_array);CHKERRQ(ierr); 184b2b77a04SHong Zhang ierr = VecGetArray(y,&y_array);CHKERRQ(ierr); 185b2b77a04SHong Zhang if (!fftw->p_forward){ /* create a plan, then excute it */ 186b2b77a04SHong Zhang switch (ndim){ 187b2b77a04SHong Zhang case 1: 1883c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 189b2b77a04SHong Zhang fftw->p_forward = fftw_mpi_plan_dft_1d(dim[0],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_FORWARD,fftw->p_flag); 1903c3a9c75SAmlan Barua #endif 191b2b77a04SHong Zhang break; 192b2b77a04SHong Zhang case 2: 1933c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 194b2b77a04SHong Zhang fftw->p_forward = fftw_mpi_plan_dft_2d(dim[0],dim[1],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_FORWARD,fftw->p_flag); 1953c3a9c75SAmlan Barua #else 1965b3e41ffSAmlan Barua printf("The code comes here \n"); 1973c3a9c75SAmlan Barua fftw->p_forward = fftw_mpi_plan_dft_r2c_2d(dim[0],dim[1],(double *)x_array,(fftw_complex*)y_array,comm,FFTW_ESTIMATE); 1983c3a9c75SAmlan Barua #endif 199b2b77a04SHong Zhang break; 200b2b77a04SHong Zhang case 3: 2013c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 202b2b77a04SHong Zhang fftw->p_forward = fftw_mpi_plan_dft_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_FORWARD,fftw->p_flag); 2033c3a9c75SAmlan Barua #else 20451d1eed7SAmlan Barua fftw->p_forward = fftw_mpi_plan_dft_r2c_3d(dim[0],dim[1],dim[2],(double *)x_array,(fftw_complex*)y_array,comm,FFTW_ESTIMATE); 2053c3a9c75SAmlan Barua #endif 206b2b77a04SHong Zhang break; 207b2b77a04SHong Zhang default: 2083c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 209c92418ccSAmlan Barua fftw->p_forward = fftw_mpi_plan_dft(fftw->ndim_fftw,fftw->dim_fftw,(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_FORWARD,fftw->p_flag); 2103c3a9c75SAmlan Barua #else 2113c3a9c75SAmlan Barua fftw->p_forward = fftw_mpi_plan_dft_r2c(fftw->ndim_fftw,fftw->dim_fftw,(double *)x_array,(fftw_complex*)y_array,comm,FFTW_ESTIMATE); 2123c3a9c75SAmlan Barua #endif 21311902ff2SHong Zhang // fftw->p_forward = fftw_mpi_plan_dft(ndim,dim,(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_FORWARD,fftw->p_flag); 214b2b77a04SHong Zhang break; 215b2b77a04SHong Zhang } 216b2b77a04SHong Zhang fftw->finarray = x_array; 217b2b77a04SHong Zhang fftw->foutarray = y_array; 218b2b77a04SHong Zhang /* Warning: if (fftw->p_flag!==FFTW_ESTIMATE) The data in the in/out arrays is overwritten! 219b2b77a04SHong Zhang planning should be done before x is initialized! See FFTW manual sec2.1 or sec4 */ 220b2b77a04SHong Zhang fftw_execute(fftw->p_forward); 221b2b77a04SHong Zhang } else { /* use existing plan */ 222b2b77a04SHong Zhang if (fftw->finarray != x_array || fftw->foutarray != y_array){ /* use existing plan on new arrays */ 223b2b77a04SHong Zhang fftw_execute_dft(fftw->p_forward,(fftw_complex*)x_array,(fftw_complex*)y_array); 224b2b77a04SHong Zhang } else { 225b2b77a04SHong Zhang fftw_execute(fftw->p_forward); 226b2b77a04SHong Zhang } 227b2b77a04SHong Zhang } 228b2b77a04SHong Zhang ierr = VecRestoreArray(y,&y_array);CHKERRQ(ierr); 229b2b77a04SHong Zhang ierr = VecRestoreArray(x,&x_array);CHKERRQ(ierr); 230b2b77a04SHong Zhang PetscFunctionReturn(0); 231b2b77a04SHong Zhang } 232b2b77a04SHong Zhang 233b2b77a04SHong Zhang #undef __FUNCT__ 234b2b77a04SHong Zhang #define __FUNCT__ "MatMultTranspose_MPIFFTW" 235b2b77a04SHong Zhang PetscErrorCode MatMultTranspose_MPIFFTW(Mat A,Vec x,Vec y) 236b2b77a04SHong Zhang { 237b2b77a04SHong Zhang PetscErrorCode ierr; 238b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 239b2b77a04SHong Zhang Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 240b2b77a04SHong Zhang PetscScalar *x_array,*y_array; 241c92418ccSAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim; 242b2b77a04SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 243c92418ccSAmlan Barua // PetscInt ctr; 244c92418ccSAmlan Barua // ptrdiff_t ndim1=(ptrdiff_t)ndim,*pdim; 245c92418ccSAmlan Barua // ndim1=(ptrdiff_t) ndim; 246c92418ccSAmlan Barua // pdim = (ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 247c92418ccSAmlan Barua 248c92418ccSAmlan Barua // for(ctr=0;ctr<ndim;ctr++) 249c92418ccSAmlan Barua // { 250c92418ccSAmlan Barua // pdim[ctr] = dim[ctr]; 251c92418ccSAmlan Barua // } 252b2b77a04SHong Zhang 253b2b77a04SHong Zhang PetscFunctionBegin; 2543c3a9c75SAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 2553c3a9c75SAmlan Barua // SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 2563c3a9c75SAmlan Barua //#endif 257c92418ccSAmlan Barua // ierr = PetscMalloc(ndim*sizeof(ptrdiff_t), (ptrdiff_t *)&pdim);CHKERRQ(ierr); 258c92418ccSAmlan Barua // should pdim be a member of Mat_FFTW? 259c92418ccSAmlan Barua // for (ctr=0; ctr<ndim; ctr++) pdim[ctr] = dim[ctr]; 26011902ff2SHong Zhang 261b2b77a04SHong Zhang ierr = VecGetArray(x,&x_array);CHKERRQ(ierr); 262b2b77a04SHong Zhang ierr = VecGetArray(y,&y_array);CHKERRQ(ierr); 263b2b77a04SHong Zhang if (!fftw->p_backward){ /* create a plan, then excute it */ 264b2b77a04SHong Zhang switch (ndim){ 265b2b77a04SHong Zhang case 1: 2663c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 267b2b77a04SHong Zhang fftw->p_backward = fftw_mpi_plan_dft_1d(dim[0],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_BACKWARD,fftw->p_flag); 2683c3a9c75SAmlan Barua #endif 269b2b77a04SHong Zhang break; 270b2b77a04SHong Zhang case 2: 2713c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 272b2b77a04SHong Zhang fftw->p_backward = fftw_mpi_plan_dft_2d(dim[0],dim[1],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_BACKWARD,fftw->p_flag); 2733c3a9c75SAmlan Barua #else 2743c3a9c75SAmlan Barua fftw->p_backward = fftw_mpi_plan_dft_c2r_2d(dim[0],dim[1],(fftw_complex*)x_array,(double *)y_array,comm,FFTW_ESTIMATE); 2753c3a9c75SAmlan Barua #endif 276b2b77a04SHong Zhang break; 277b2b77a04SHong Zhang case 3: 2783c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 279b2b77a04SHong Zhang fftw->p_backward = fftw_mpi_plan_dft_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_BACKWARD,fftw->p_flag); 2803c3a9c75SAmlan Barua #else 2813c3a9c75SAmlan Barua fftw->p_backward = fftw_mpi_plan_dft_c2r_3d(dim[0],dim[1],dim[2],(fftw_complex*)x_array,(double *)y_array,comm,FFTW_ESTIMATE); 2823c3a9c75SAmlan Barua #endif 283b2b77a04SHong Zhang break; 284b2b77a04SHong Zhang default: 2853c3a9c75SAmlan Barua #if defined(PETSC_USE_COMPLEX) 286c92418ccSAmlan Barua fftw->p_backward = fftw_mpi_plan_dft(fftw->ndim_fftw,fftw->dim_fftw,(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_BACKWARD,fftw->p_flag); 2873c3a9c75SAmlan Barua #else 2883c3a9c75SAmlan Barua fftw->p_backward = fftw_mpi_plan_dft_c2r(fftw->ndim_fftw,fftw->dim_fftw,(fftw_complex*)x_array,(double *)y_array,comm,FFTW_ESTIMATE); 2893c3a9c75SAmlan Barua #endif 290c92418ccSAmlan Barua // fftw->p_backward = fftw_mpi_plan_dft(ndim,dim,(fftw_complex*)x_array,(fftw_complex*)y_array,comm,FFTW_BACKWARD,fftw->p_flag); 291b2b77a04SHong Zhang break; 292b2b77a04SHong Zhang } 293b2b77a04SHong Zhang fftw->binarray = x_array; 294b2b77a04SHong Zhang fftw->boutarray = y_array; 295b2b77a04SHong Zhang fftw_execute(fftw->p_backward);CHKERRQ(ierr); 296b2b77a04SHong Zhang } else { /* use existing plan */ 297b2b77a04SHong Zhang if (fftw->binarray != x_array || fftw->boutarray != y_array){ /* use existing plan on new arrays */ 298b2b77a04SHong Zhang fftw_execute_dft(fftw->p_backward,(fftw_complex*)x_array,(fftw_complex*)y_array); 299b2b77a04SHong Zhang } else { 300b2b77a04SHong Zhang fftw_execute(fftw->p_backward);CHKERRQ(ierr); 301b2b77a04SHong Zhang } 302b2b77a04SHong Zhang } 303b2b77a04SHong Zhang ierr = VecRestoreArray(y,&y_array);CHKERRQ(ierr); 304b2b77a04SHong Zhang ierr = VecRestoreArray(x,&x_array);CHKERRQ(ierr); 305b2b77a04SHong Zhang PetscFunctionReturn(0); 306b2b77a04SHong Zhang } 307b2b77a04SHong Zhang 308b2b77a04SHong Zhang #undef __FUNCT__ 309b2b77a04SHong Zhang #define __FUNCT__ "MatDestroy_FFTW" 310b2b77a04SHong Zhang PetscErrorCode MatDestroy_FFTW(Mat A) 311b2b77a04SHong Zhang { 312b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 313b2b77a04SHong Zhang Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 314b2b77a04SHong Zhang PetscErrorCode ierr; 315b2b77a04SHong Zhang 316b2b77a04SHong Zhang PetscFunctionBegin; 317b2b77a04SHong Zhang #if !defined(PETSC_USE_COMPLEX) 318b2b77a04SHong Zhang SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 319b2b77a04SHong Zhang #endif 320b2b77a04SHong Zhang fftw_destroy_plan(fftw->p_forward); 321b2b77a04SHong Zhang fftw_destroy_plan(fftw->p_backward); 322b1301b2eSHong Zhang ierr = PetscFree(fftw->dim_fftw);CHKERRQ(ierr); 323bf0cc555SLisandro Dalcin ierr = PetscFree(fft->data);CHKERRQ(ierr); 324b2b77a04SHong Zhang PetscFunctionReturn(0); 325b2b77a04SHong Zhang } 326b2b77a04SHong Zhang 327c6db04a5SJed Brown #include <../src/vec/vec/impls/mpi/pvecimpl.h> /*I "petscvec.h" I*/ 328b2b77a04SHong Zhang #undef __FUNCT__ 329b2b77a04SHong Zhang #define __FUNCT__ "VecDestroy_MPIFFTW" 330b2b77a04SHong Zhang PetscErrorCode VecDestroy_MPIFFTW(Vec v) 331b2b77a04SHong Zhang { 332b2b77a04SHong Zhang PetscErrorCode ierr; 333b2b77a04SHong Zhang PetscScalar *array; 334b2b77a04SHong Zhang 335b2b77a04SHong Zhang PetscFunctionBegin; 336b2b77a04SHong Zhang #if !defined(PETSC_USE_COMPLEX) 337b2b77a04SHong Zhang SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 338b2b77a04SHong Zhang #endif 339b2b77a04SHong Zhang ierr = VecGetArray(v,&array);CHKERRQ(ierr); 340b2b77a04SHong Zhang fftw_free((fftw_complex*)array);CHKERRQ(ierr); 341b2b77a04SHong Zhang ierr = VecRestoreArray(v,&array);CHKERRQ(ierr); 342b2b77a04SHong Zhang ierr = VecDestroy_MPI(v);CHKERRQ(ierr); 343b2b77a04SHong Zhang PetscFunctionReturn(0); 344b2b77a04SHong Zhang } 345b2b77a04SHong Zhang 346b2b77a04SHong Zhang #undef __FUNCT__ 3473c3a9c75SAmlan Barua #define __FUNCT__ "MatGetVecs1DC_FFTW" 348c92418ccSAmlan Barua /* 349c92418ccSAmlan Barua MatGetVecs_FFTW1D - Get Vectors(s) compatible with matrix, i.e. with the 350c92418ccSAmlan Barua parallel layout determined by FFTW-1D 351c92418ccSAmlan Barua 352c92418ccSAmlan Barua */ 353c92418ccSAmlan Barua PetscErrorCode MatGetVecs_FFTW1D(Mat A,Vec *fin,Vec *fout,Vec *bin,Vec *bout) 354c92418ccSAmlan Barua { 355c92418ccSAmlan Barua PetscErrorCode ierr; 356c92418ccSAmlan Barua PetscMPIInt size,rank; 357c92418ccSAmlan Barua MPI_Comm comm=((PetscObject)A)->comm; 358c92418ccSAmlan Barua Mat_FFT *fft = (Mat_FFT*)A->data; 359c92418ccSAmlan Barua // Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 360c92418ccSAmlan Barua PetscInt N=fft->N; 361c92418ccSAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim; 362c92418ccSAmlan Barua ptrdiff_t f_alloc_local,f_local_n0,f_local_0_start; 363c92418ccSAmlan Barua ptrdiff_t f_local_n1,f_local_1_end; 364c92418ccSAmlan Barua ptrdiff_t b_alloc_local,b_local_n0,b_local_0_start; 365c92418ccSAmlan Barua ptrdiff_t b_local_n1,b_local_1_end; 366c92418ccSAmlan Barua fftw_complex *data_fin,*data_fout,*data_bin,*data_bout; 367c92418ccSAmlan Barua 368c92418ccSAmlan Barua PetscFunctionBegin; 369c92418ccSAmlan Barua #if !defined(PETSC_USE_COMPLEX) 370c92418ccSAmlan Barua SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 371c92418ccSAmlan Barua #endif 372c92418ccSAmlan Barua ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 373c92418ccSAmlan Barua ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 374c92418ccSAmlan Barua if (size == 1){ 375c92418ccSAmlan Barua SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Works only for parallel 1D"); 376c92418ccSAmlan Barua } 377c92418ccSAmlan Barua else { 378c92418ccSAmlan Barua if (ndim>1){ 379c92418ccSAmlan Barua SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Works only for parallel 1D");} 380c92418ccSAmlan Barua else { 381c92418ccSAmlan Barua f_alloc_local = fftw_mpi_local_size_1d(dim[0],comm,FFTW_FORWARD,FFTW_ESTIMATE,&f_local_n0,&f_local_0_start,&f_local_n1,&f_local_1_end); 382c92418ccSAmlan Barua b_alloc_local = fftw_mpi_local_size_1d(dim[0],comm,FFTW_BACKWARD,FFTW_ESTIMATE,&b_local_n0,&b_local_0_start,&b_local_n1,&b_local_1_end); 383c92418ccSAmlan Barua if (fin) { 384c92418ccSAmlan Barua data_fin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*f_alloc_local); 385c92418ccSAmlan Barua ierr = VecCreateMPIWithArray(comm,f_local_n0,N,(const PetscScalar*)data_fin,fin);CHKERRQ(ierr); 386c92418ccSAmlan Barua (*fin)->ops->destroy = VecDestroy_MPIFFTW; 387c92418ccSAmlan Barua } 388c92418ccSAmlan Barua if (fout) { 389c92418ccSAmlan Barua data_fout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*f_alloc_local); 390c92418ccSAmlan Barua ierr = VecCreateMPIWithArray(comm,f_local_n1,N,(const PetscScalar*)data_fout,fout);CHKERRQ(ierr); 391c92418ccSAmlan Barua (*fout)->ops->destroy = VecDestroy_MPIFFTW; 392c92418ccSAmlan Barua } 393c92418ccSAmlan Barua if (bin) { 394c92418ccSAmlan Barua data_bin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*b_alloc_local); 395c92418ccSAmlan Barua ierr = VecCreateMPIWithArray(comm,b_local_n0,N,(const PetscScalar*)data_bin,bin);CHKERRQ(ierr); 396c92418ccSAmlan Barua (*bin)->ops->destroy = VecDestroy_MPIFFTW; 397c92418ccSAmlan Barua } 398c92418ccSAmlan Barua if (bout) { 399c92418ccSAmlan Barua data_bout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*b_alloc_local); 400c92418ccSAmlan Barua ierr = VecCreateMPIWithArray(comm,b_local_n1,N,(const PetscScalar*)data_bout,bout);CHKERRQ(ierr); 401c92418ccSAmlan Barua (*bout)->ops->destroy = VecDestroy_MPIFFTW; 402c92418ccSAmlan Barua } 403c92418ccSAmlan Barua } 404c92418ccSAmlan Barua if (fin){ 405c92418ccSAmlan Barua ierr = PetscLayoutReference(A->cmap,&(*fin)->map);CHKERRQ(ierr); 406c92418ccSAmlan Barua } 407c92418ccSAmlan Barua if (fout){ 408c92418ccSAmlan Barua ierr = PetscLayoutReference(A->rmap,&(*fout)->map);CHKERRQ(ierr); 409c92418ccSAmlan Barua } 410c92418ccSAmlan Barua if (bin){ 411c92418ccSAmlan Barua ierr = PetscLayoutReference(A->rmap,&(*bin)->map);CHKERRQ(ierr); 412c92418ccSAmlan Barua } 413c92418ccSAmlan Barua if (bout){ 414c92418ccSAmlan Barua ierr = PetscLayoutReference(A->rmap,&(*bout)->map);CHKERRQ(ierr); 415c92418ccSAmlan Barua } 416c92418ccSAmlan Barua PetscFunctionReturn(0); 417c92418ccSAmlan Barua } 418c92418ccSAmlan Barua 419c92418ccSAmlan Barua 420c92418ccSAmlan Barua } 4213c3a9c75SAmlan Barua 422c92418ccSAmlan Barua #undef __FUNCT__ 423b2b77a04SHong Zhang #define __FUNCT__ "MatGetVecs_FFTW" 424b2b77a04SHong Zhang /* 425b2b77a04SHong Zhang MatGetVecs_FFTW - Get vector(s) compatible with the matrix, i.e. with the 426b2b77a04SHong Zhang parallel layout determined by FFTW 427b2b77a04SHong Zhang 428b2b77a04SHong Zhang Collective on Mat 429b2b77a04SHong Zhang 430b2b77a04SHong Zhang Input Parameter: 431b2b77a04SHong Zhang . mat - the matrix 432b2b77a04SHong Zhang 433b2b77a04SHong Zhang Output Parameter: 434b2b77a04SHong Zhang + fin - (optional) input vector of forward FFTW 435b2b77a04SHong Zhang - fout - (optional) output vector of forward FFTW 436b2b77a04SHong Zhang 437b2b77a04SHong Zhang Level: advanced 438b2b77a04SHong Zhang 439b2b77a04SHong Zhang .seealso: MatCreateFFTW() 440b2b77a04SHong Zhang */ 441b2b77a04SHong Zhang PetscErrorCode MatGetVecs_FFTW(Mat A,Vec *fin,Vec *fout) 442b2b77a04SHong Zhang { 443b2b77a04SHong Zhang PetscErrorCode ierr; 444b2b77a04SHong Zhang PetscMPIInt size,rank; 445b2b77a04SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 446b2b77a04SHong Zhang Mat_FFT *fft = (Mat_FFT*)A->data; 447c92418ccSAmlan Barua Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 4483c3a9c75SAmlan Barua PetscInt N=fft->N, N1, n1,vsize; 449b2b77a04SHong Zhang 450b2b77a04SHong Zhang PetscFunctionBegin; 4513c3a9c75SAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 4523c3a9c75SAmlan Barua // SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"not support for real numbers"); 4533c3a9c75SAmlan Barua //#endif 454b2b77a04SHong Zhang PetscValidHeaderSpecific(A,MAT_CLASSID,1); 455b2b77a04SHong Zhang PetscValidType(A,1); 456b2b77a04SHong Zhang 457b2b77a04SHong Zhang ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 458b2b77a04SHong Zhang ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 459b2b77a04SHong Zhang if (size == 1){ /* sequential case */ 460e5d7f247SAmlan Barua #if defined(PETSC_USE_COMPLEX) 461b2b77a04SHong Zhang if (fin) {ierr = VecCreateSeq(PETSC_COMM_SELF,N,fin);CHKERRQ(ierr);} 462b2b77a04SHong Zhang if (fout){ierr = VecCreateSeq(PETSC_COMM_SELF,N,fout);CHKERRQ(ierr);} 463e5d7f247SAmlan Barua #else 464e5d7f247SAmlan Barua if (fin) {ierr = VecCreateSeq(PETSC_COMM_SELF,N,fin);CHKERRQ(ierr);} 465e5d7f247SAmlan Barua if (fout){ierr = VecCreateSeq(PETSC_COMM_SELF,2*(N/2+1),fout);CHKERRQ(ierr);} 466e5d7f247SAmlan Barua #endif 4673c3a9c75SAmlan Barua printf("The code successfully comes at the end of the routine with one processor\n"); 468b2b77a04SHong Zhang } else { /* mpi case */ 469b2b77a04SHong Zhang ptrdiff_t alloc_local,local_n0,local_0_start; 4706882372aSHong Zhang ptrdiff_t local_n1,local_1_end; 471c92418ccSAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim,n=fft->n; 472b2b77a04SHong Zhang fftw_complex *data_fin,*data_fout; 47351d1eed7SAmlan Barua double *data_finr ; 474b3a17365SAmlan Barua ptrdiff_t local_1_start,temp; 475c92418ccSAmlan Barua // PetscInt ctr; 476c92418ccSAmlan Barua // ptrdiff_t ndim1,*pdim; 477c92418ccSAmlan Barua // ndim1=(ptrdiff_t) ndim; 478c92418ccSAmlan Barua // pdim = (ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 47911902ff2SHong Zhang 480c92418ccSAmlan Barua // for(ctr=0;ctr<ndim;ctr++) 481f76f76beSAmlan Barua // {k 482c92418ccSAmlan Barua // pdim[ctr] = dim[ctr]; 483c92418ccSAmlan Barua // } 484b2b77a04SHong Zhang 485f76f76beSAmlan Barua 486f76f76beSAmlan Barua 487b2b77a04SHong Zhang switch (ndim){ 488b2b77a04SHong Zhang case 1: 4896882372aSHong Zhang /* Get local size */ 490e5d7f247SAmlan Barua /* We need to write an error message here saying that one cannot call this routine when doing parallel 1D real FFTW */ 491c92418ccSAmlan Barua // SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Works only for parallel Multi-dimensional FFTW, Dimension>1. Check Documentation for MatGetVecs_FFTW1D routine"); 4926882372aSHong Zhang alloc_local = fftw_mpi_local_size_1d(dim[0],comm,FFTW_FORWARD,FFTW_ESTIMATE,&local_n0,&local_0_start,&local_n1,&local_1_end); 4936882372aSHong Zhang if (fin) { 4946882372aSHong Zhang data_fin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 4956882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,local_n0,N,(const PetscScalar*)data_fin,fin);CHKERRQ(ierr); 4966882372aSHong Zhang (*fin)->ops->destroy = VecDestroy_MPIFFTW; 4976882372aSHong Zhang } 4986882372aSHong Zhang if (fout) { 4996882372aSHong Zhang data_fout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 5006882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,local_n1,N,(const PetscScalar*)data_fout,fout);CHKERRQ(ierr); 5016882372aSHong Zhang (*fout)->ops->destroy = VecDestroy_MPIFFTW; 5026882372aSHong Zhang } 503b2b77a04SHong Zhang break; 504b2b77a04SHong Zhang case 2: 5053c3a9c75SAmlan Barua #if !defined(PETSC_USE_COMPLEX) 5063c3a9c75SAmlan Barua alloc_local = fftw_mpi_local_size_2d_transposed(dim[0],dim[1]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 5073c3a9c75SAmlan Barua N1 = 2*dim[0]*(dim[1]/2+1); n1 = 2*local_n0*(dim[1]/2+1); 5083c3a9c75SAmlan Barua if (fin) { 5093c3a9c75SAmlan Barua data_finr=(double *)fftw_malloc(sizeof(double)*alloc_local*2); 51054dd5118SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,(PetscInt)n1,N1,(PetscScalar*)data_finr,fin);CHKERRQ(ierr); 5113c3a9c75SAmlan Barua ierr = VecGetSize(*fin,&vsize);CHKERRQ(ierr); 51209dd8a53SAmlan Barua //printf("The code comes here with vector size %d\n",vsize); 5133c3a9c75SAmlan Barua (*fin)->ops->destroy = VecDestroy_MPIFFTW; 5143c3a9c75SAmlan Barua } 5153c3a9c75SAmlan Barua if (fout) { 51609dd8a53SAmlan Barua data_fout=(fftw_complex *)fftw_malloc(sizeof(fftw_complex)*alloc_local); 51709dd8a53SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,n1,N1,(PetscScalar*)data_fout,fout);CHKERRQ(ierr); 5183c3a9c75SAmlan Barua (*fout)->ops->destroy = VecDestroy_MPIFFTW; 5193c3a9c75SAmlan Barua } 520f76f76beSAmlan Barua printf("Vector size from fftw.c is given by %d, %d\n",n1,N1); 5213c3a9c75SAmlan Barua 5223c3a9c75SAmlan Barua #else 523b2b77a04SHong Zhang /* Get local size */ 52409dd8a53SAmlan Barua printf("Hope this does not come here"); 525b2b77a04SHong Zhang alloc_local = fftw_mpi_local_size_2d(dim[0],dim[1],comm,&local_n0,&local_0_start); 526b2b77a04SHong Zhang if (fin) { 527b2b77a04SHong Zhang data_fin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 528b2b77a04SHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fin,fin);CHKERRQ(ierr); 529b2b77a04SHong Zhang (*fin)->ops->destroy = VecDestroy_MPIFFTW; 530b2b77a04SHong Zhang } 531b2b77a04SHong Zhang if (fout) { 532b2b77a04SHong Zhang data_fout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 533b2b77a04SHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fout,fout);CHKERRQ(ierr); 534b2b77a04SHong Zhang (*fout)->ops->destroy = VecDestroy_MPIFFTW; 535b2b77a04SHong Zhang } 5363c3a9c75SAmlan Barua printf("Hope this does not come here"); 5373c3a9c75SAmlan Barua #endif 538b2b77a04SHong Zhang break; 539b2b77a04SHong Zhang case 3: 5406882372aSHong Zhang /* Get local size */ 5413c3a9c75SAmlan Barua #if !defined(PETSC_USE_COMPLEX) 54251d1eed7SAmlan Barua alloc_local = fftw_mpi_local_size_3d_transposed(dim[0],dim[1],dim[2]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 54351d1eed7SAmlan Barua N1 = 2*dim[0]*dim[1]*(dim[2]/2+1); n1 = 2*local_n0*dim[1]*(dim[2]/2+1); 54451d1eed7SAmlan Barua if (fin) { 54551d1eed7SAmlan Barua data_finr=(double *)fftw_malloc(sizeof(double)*alloc_local*2); 54651d1eed7SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,(PetscInt)n1,N1,(PetscScalar*)data_finr,fin);CHKERRQ(ierr); 54751d1eed7SAmlan Barua ierr = VecGetSize(*fin,&vsize);CHKERRQ(ierr); 54851d1eed7SAmlan Barua //printf("The code comes here with vector size %d\n",vsize); 54951d1eed7SAmlan Barua (*fin)->ops->destroy = VecDestroy_MPIFFTW; 55051d1eed7SAmlan Barua } 55151d1eed7SAmlan Barua if (fout) { 55251d1eed7SAmlan Barua data_fout=(fftw_complex *)fftw_malloc(sizeof(fftw_complex)*alloc_local); 55351d1eed7SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,n1,N1,(PetscScalar*)data_fout,fout);CHKERRQ(ierr); 55451d1eed7SAmlan Barua (*fout)->ops->destroy = VecDestroy_MPIFFTW; 55551d1eed7SAmlan Barua } 55651d1eed7SAmlan Barua printf("Vector size from fftw.c is given by %d, %d\n",n1,N1); 55751d1eed7SAmlan Barua 55851d1eed7SAmlan Barua 5593c3a9c75SAmlan Barua #else 5606882372aSHong Zhang alloc_local = fftw_mpi_local_size_3d(dim[0],dim[1],dim[2],comm,&local_n0,&local_0_start); 56111902ff2SHong Zhang // printf("The quantity n is %d",n); 5626882372aSHong Zhang if (fin) { 5636882372aSHong Zhang data_fin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 5646882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fin,fin);CHKERRQ(ierr); 5656882372aSHong Zhang (*fin)->ops->destroy = VecDestroy_MPIFFTW; 5666882372aSHong Zhang } 5676882372aSHong Zhang if (fout) { 5686882372aSHong Zhang data_fout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 5696882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fout,fout);CHKERRQ(ierr); 5706882372aSHong Zhang (*fout)->ops->destroy = VecDestroy_MPIFFTW; 5716882372aSHong Zhang } 5723c3a9c75SAmlan Barua #endif 573b2b77a04SHong Zhang break; 574b2b77a04SHong Zhang default: 5756882372aSHong Zhang /* Get local size */ 5763c3a9c75SAmlan Barua #if !defined(PETSC_USE_COMPLEX) 577b3a17365SAmlan Barua temp = (fftw->dim_fftw)[fftw->ndim_fftw-1]; 578b3a17365SAmlan Barua printf("The value of temp is %ld\n",temp); 579b3a17365SAmlan Barua (fftw->dim_fftw)[fftw->ndim_fftw-1] = temp/2 + 1; 580b3a17365SAmlan Barua alloc_local = fftw_mpi_local_size_transposed(fftw->ndim_fftw,fftw->dim_fftw,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 581b3a17365SAmlan Barua N1 = 2*N*(PetscInt)((fftw->dim_fftw)[fftw->ndim_fftw-1])/((PetscInt) temp); 582b3a17365SAmlan Barua (fftw->dim_fftw)[fftw->ndim_fftw-1] = temp; 583b3a17365SAmlan Barua if (fin) { 584b3a17365SAmlan Barua data_finr=(double *)fftw_malloc(sizeof(double)*alloc_local*2); 585b3a17365SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,(PetscInt)n,N1,(PetscScalar*)data_finr,fin);CHKERRQ(ierr); 586b3a17365SAmlan Barua ierr = VecGetSize(*fin,&vsize);CHKERRQ(ierr); 587b3a17365SAmlan Barua //printf("The code comes here with vector size %d\n",vsize); 588b3a17365SAmlan Barua (*fin)->ops->destroy = VecDestroy_MPIFFTW; 589b3a17365SAmlan Barua } 590b3a17365SAmlan Barua if (fout) { 591b3a17365SAmlan Barua data_fout=(fftw_complex *)fftw_malloc(sizeof(fftw_complex)*alloc_local); 592b3a17365SAmlan Barua ierr = VecCreateMPIWithArray(PETSC_COMM_WORLD,n,N1,(PetscScalar*)data_fout,fout);CHKERRQ(ierr); 593b3a17365SAmlan Barua (*fout)->ops->destroy = VecDestroy_MPIFFTW; 594b3a17365SAmlan Barua } 595b3a17365SAmlan Barua 5963c3a9c75SAmlan Barua #else 597c92418ccSAmlan Barua alloc_local = fftw_mpi_local_size(fftw->ndim_fftw,fftw->dim_fftw,comm,&local_n0,&local_0_start); 59811902ff2SHong Zhang // printf("The value of alloc local is %d from process %d\n",alloc_local,rank); 59911902ff2SHong Zhang // printf("The value of alloc local is %d",alloc_local); 60011902ff2SHong Zhang // pdim=(ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 60111902ff2SHong Zhang // for(i=0;i<ndim;i++) 60211902ff2SHong Zhang // { 60311902ff2SHong Zhang // pdim[i]=dim[i];printf("%d",pdim[i]); 60411902ff2SHong Zhang // } 60511902ff2SHong Zhang // alloc_local = fftw_mpi_local_size(ndim,pdim,comm,&local_n0,&local_0_start); 60611902ff2SHong Zhang // printf("The quantity n is %d",n); 6076882372aSHong Zhang if (fin) { 6086882372aSHong Zhang data_fin = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 6096882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fin,fin);CHKERRQ(ierr); 6106882372aSHong Zhang (*fin)->ops->destroy = VecDestroy_MPIFFTW; 6116882372aSHong Zhang } 6126882372aSHong Zhang if (fout) { 6136882372aSHong Zhang data_fout = (fftw_complex*)fftw_malloc(sizeof(fftw_complex)*alloc_local); 6146882372aSHong Zhang ierr = VecCreateMPIWithArray(comm,n,N,(const PetscScalar*)data_fout,fout);CHKERRQ(ierr); 6156882372aSHong Zhang (*fout)->ops->destroy = VecDestroy_MPIFFTW; 6166882372aSHong Zhang } 6173c3a9c75SAmlan Barua #endif 618b2b77a04SHong Zhang break; 619b2b77a04SHong Zhang } 620b2b77a04SHong Zhang } 62154dd5118SAmlan Barua // if (fin){ 62254dd5118SAmlan Barua // ierr = PetscLayoutReference(A->cmap,&(*fin)->map);CHKERRQ(ierr); 62354dd5118SAmlan Barua // } 62454dd5118SAmlan Barua // if (fout){ 62554dd5118SAmlan Barua // ierr = PetscLayoutReference(A->rmap,&(*fout)->map);CHKERRQ(ierr); 62654dd5118SAmlan Barua // } 627b2b77a04SHong Zhang PetscFunctionReturn(0); 628b2b77a04SHong Zhang } 629b2b77a04SHong Zhang 630b2b77a04SHong Zhang #undef __FUNCT__ 6313c3a9c75SAmlan Barua #define __FUNCT__ "InputTransformFFT" 6323c3a9c75SAmlan Barua PetscErrorCode InputTransformFFT(Mat A,Vec x,Vec y) 6333c3a9c75SAmlan Barua { 6343c3a9c75SAmlan Barua PetscErrorCode ierr; 6353c3a9c75SAmlan Barua PetscFunctionBegin; 6363c3a9c75SAmlan Barua ierr = PetscTryMethod(A,"InputTransformFFT_C",(Mat,Vec,Vec),(A,x,y));CHKERRQ(ierr); 6373c3a9c75SAmlan Barua PetscFunctionReturn(0); 6383c3a9c75SAmlan Barua } 63954efbe56SHong Zhang 640b2b77a04SHong Zhang /* 6413c3a9c75SAmlan Barua InputTransformFFT_FFTW - Copies the user data to the vector that goes into FFTW block 6423c3a9c75SAmlan Barua Input A, x, y 6433c3a9c75SAmlan Barua A - FFTW matrix 64454dd5118SAmlan Barua x - user data 645b2b77a04SHong Zhang Options Database Keys: 646b2b77a04SHong Zhang + -mat_fftw_plannerflags - set FFTW planner flags 647b2b77a04SHong Zhang 648b2b77a04SHong Zhang Level: intermediate 649b2b77a04SHong Zhang 650b2b77a04SHong Zhang */ 6513c3a9c75SAmlan Barua 6523c3a9c75SAmlan Barua EXTERN_C_BEGIN 6533c3a9c75SAmlan Barua #undef __FUNCT__ 6543c3a9c75SAmlan Barua #define __FUNCT__ "InputTransformFFT_FTTW" 6553c3a9c75SAmlan Barua PetscErrorCode InputTransformFFT_FFTW(Mat A,Vec x,Vec y) 6563c3a9c75SAmlan Barua { 6573c3a9c75SAmlan Barua PetscErrorCode ierr; 6583c3a9c75SAmlan Barua MPI_Comm comm=((PetscObject)A)->comm; 6593c3a9c75SAmlan Barua Mat_FFT *fft = (Mat_FFT*)A->data; 6603c3a9c75SAmlan Barua Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 6613c3a9c75SAmlan Barua PetscInt N=fft->N, N1, n1 ,NM; 6623c3a9c75SAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim,n=fft->n; 663f76f76beSAmlan Barua PetscInt low, *indx1, *indx2, tempindx, tempindx1, *indx3, *indx4; 664e5d7f247SAmlan Barua PetscInt i,j,k,rank,size,partial_dim; 6653c3a9c75SAmlan Barua ptrdiff_t alloc_local,local_n0,local_0_start; 666e5d7f247SAmlan Barua ptrdiff_t local_n1,local_1_start,temp; 6673c3a9c75SAmlan Barua VecScatter vecscat; 6683c3a9c75SAmlan Barua IS list1,list2; 6693c3a9c75SAmlan Barua 670f76f76beSAmlan Barua ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 671f76f76beSAmlan Barua ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 6723c3a9c75SAmlan Barua ierr = VecGetOwnershipRange(y,&low,PETSC_NULL); 673f76f76beSAmlan Barua printf("Local ownership starts at %d\n",low); 6743c3a9c75SAmlan Barua 6753c3a9c75SAmlan Barua switch (ndim){ 6763c3a9c75SAmlan Barua case 1: 677e5d7f247SAmlan Barua SETERRQ(comm,PETSC_ERR_SUP,"FFTW does not support parallel 1D real transform"); 6783c3a9c75SAmlan Barua break; 6793c3a9c75SAmlan Barua case 2: 6803c3a9c75SAmlan Barua alloc_local = fftw_mpi_local_size_2d_transposed(dim[0],dim[1]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 6813c3a9c75SAmlan Barua N1 = 2*dim[0]*(dim[1]/2+1); n1 = 2*local_n0*(dim[1]/2+1); 6823c3a9c75SAmlan Barua 6835b3e41ffSAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx1);CHKERRQ(ierr); 6845b3e41ffSAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx2);CHKERRQ(ierr); 6855b3e41ffSAmlan Barua printf("Val local_0_start = %ld\n",local_0_start); 6863c3a9c75SAmlan Barua 6873c3a9c75SAmlan Barua if (dim[1]%2==0) 6883c3a9c75SAmlan Barua NM = dim[1]+2; 6893c3a9c75SAmlan Barua else 6903c3a9c75SAmlan Barua NM = dim[1]+1; 6913c3a9c75SAmlan Barua 6923c3a9c75SAmlan Barua for (i=0;i<local_n0;i++){ 6933c3a9c75SAmlan Barua for (j=0;j<dim[1];j++){ 6943c3a9c75SAmlan Barua tempindx = i*dim[1] + j; 6953c3a9c75SAmlan Barua tempindx1 = i*NM + j; 6965b3e41ffSAmlan Barua indx1[tempindx]=local_0_start*dim[1]+tempindx; 6973c3a9c75SAmlan Barua indx2[tempindx]=low+tempindx1; 6985b3e41ffSAmlan Barua // printf("Val tempindx1 = %d\n",tempindx1); 6995b3e41ffSAmlan Barua // printf("index1 %d from proc %d is \n",indx1[tempindx],rank); 7005b3e41ffSAmlan Barua // printf("index2 %d from proc %d is \n",indx2[tempindx],rank); 7015b3e41ffSAmlan Barua // printf("-------------------------\n",indx2[tempindx],rank); 7023c3a9c75SAmlan Barua } 7033c3a9c75SAmlan Barua } 7043c3a9c75SAmlan Barua 7053c3a9c75SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1],indx1,PETSC_COPY_VALUES,&list1);CHKERRQ(ierr); 7063c3a9c75SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1],indx2,PETSC_COPY_VALUES,&list2);CHKERRQ(ierr); 7073c3a9c75SAmlan Barua 708f76f76beSAmlan Barua ierr = VecScatterCreate(x,list1,y,list2,&vecscat);CHKERRQ(ierr); 709f76f76beSAmlan Barua ierr = VecScatterBegin(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 710f76f76beSAmlan Barua ierr = VecScatterEnd(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 711f76f76beSAmlan Barua ierr = VecScatterDestroy(&vecscat);CHKERRQ(ierr); 7123c3a9c75SAmlan Barua break; 7133c3a9c75SAmlan Barua 7143c3a9c75SAmlan Barua case 3: 71551d1eed7SAmlan Barua alloc_local = fftw_mpi_local_size_3d_transposed(dim[0],dim[1],dim[2]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 71651d1eed7SAmlan Barua N1 = 2*dim[0]*dim[1]*(dim[2]/2+1); n1 = 2*local_n0*dim[1]*(dim[2]/2+1); 71751d1eed7SAmlan Barua 71851d1eed7SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx1);CHKERRQ(ierr); 71951d1eed7SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx2);CHKERRQ(ierr); 72051d1eed7SAmlan Barua printf("Val local_0_start = %ld\n",local_0_start); 72151d1eed7SAmlan Barua 72251d1eed7SAmlan Barua if (dim[2]%2==0) 72351d1eed7SAmlan Barua NM = dim[2]+2; 72451d1eed7SAmlan Barua else 72551d1eed7SAmlan Barua NM = dim[2]+1; 72651d1eed7SAmlan Barua 72751d1eed7SAmlan Barua for (i=0;i<local_n0;i++){ 72851d1eed7SAmlan Barua for (j=0;j<dim[1];j++){ 72951d1eed7SAmlan Barua for (k=0;k<dim[2];k++){ 73051d1eed7SAmlan Barua tempindx = i*dim[1]*dim[2] + j*dim[2] + k; 73151d1eed7SAmlan Barua tempindx1 = i*dim[1]*NM + j*NM + k; 73251d1eed7SAmlan Barua indx1[tempindx]=local_0_start*dim[1]*dim[2]+tempindx; 73351d1eed7SAmlan Barua indx2[tempindx]=low+tempindx1; 73451d1eed7SAmlan Barua } 73551d1eed7SAmlan Barua // printf("Val tempindx1 = %d\n",tempindx1); 73651d1eed7SAmlan Barua // printf("index1 %d from proc %d is \n",indx1[tempindx],rank); 73751d1eed7SAmlan Barua // printf("index2 %d from proc %d is \n",indx2[tempindx],rank); 73851d1eed7SAmlan Barua // printf("-------------------------\n",indx2[tempindx],rank); 73951d1eed7SAmlan Barua } 74051d1eed7SAmlan Barua } 74151d1eed7SAmlan Barua 74251d1eed7SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1]*dim[2],indx1,PETSC_COPY_VALUES,&list1);CHKERRQ(ierr); 74351d1eed7SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1]*dim[2],indx2,PETSC_COPY_VALUES,&list2);CHKERRQ(ierr); 74451d1eed7SAmlan Barua 74551d1eed7SAmlan Barua ierr = VecScatterCreate(x,list1,y,list2,&vecscat);CHKERRQ(ierr); 74651d1eed7SAmlan Barua ierr = VecScatterBegin(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 74751d1eed7SAmlan Barua ierr = VecScatterEnd(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 74851d1eed7SAmlan Barua ierr = VecScatterDestroy(&vecscat);CHKERRQ(ierr); 7493c3a9c75SAmlan Barua break; 7503c3a9c75SAmlan Barua 7513c3a9c75SAmlan Barua default: 752e5d7f247SAmlan Barua temp = (fftw->dim_fftw)[fftw->ndim_fftw-1]; 753e5d7f247SAmlan Barua printf("The value of temp is %ld\n",temp); 754e5d7f247SAmlan Barua (fftw->dim_fftw)[fftw->ndim_fftw-1] = temp/2 + 1; 755e5d7f247SAmlan Barua alloc_local = fftw_mpi_local_size_transposed(fftw->ndim_fftw,fftw->dim_fftw,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 756e5d7f247SAmlan Barua N1 = 2*N*(PetscInt)((fftw->dim_fftw)[fftw->ndim_fftw-1])/((PetscInt) temp); 757e5d7f247SAmlan Barua (fftw->dim_fftw)[fftw->ndim_fftw-1] = temp; 758e5d7f247SAmlan Barua 759e5d7f247SAmlan Barua partial_dim = fftw->partial_dim; 760e5d7f247SAmlan Barua printf("The value of partial dim is %d\n",partial_dim); 761e5d7f247SAmlan Barua 762e5d7f247SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*partial_dim,&indx1);CHKERRQ(ierr); 763e5d7f247SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*partial_dim,&indx2);CHKERRQ(ierr); 764e5d7f247SAmlan Barua printf("Val local_0_start = %ld\n",local_0_start); 765e5d7f247SAmlan Barua 766e5d7f247SAmlan Barua if (dim[ndim-1]%2==0) 767e5d7f247SAmlan Barua NM = dim[ndim-1]+2; 768e5d7f247SAmlan Barua else 769e5d7f247SAmlan Barua NM = dim[ndim-1]+1; 770e5d7f247SAmlan Barua 771e5d7f247SAmlan Barua 772e5d7f247SAmlan Barua 7733c3a9c75SAmlan Barua break; 7743c3a9c75SAmlan Barua } 7753c3a9c75SAmlan Barua 7763c3a9c75SAmlan Barua return 0; 7773c3a9c75SAmlan Barua } 7783c3a9c75SAmlan Barua EXTERN_C_END 7793c3a9c75SAmlan Barua 7803c3a9c75SAmlan Barua #undef __FUNCT__ 7813c3a9c75SAmlan Barua #define __FUNCT__ "OutputTransformFFT" 7823c3a9c75SAmlan Barua PetscErrorCode OutputTransformFFT(Mat A,Vec x,Vec y) 7833c3a9c75SAmlan Barua { 7843c3a9c75SAmlan Barua PetscErrorCode ierr; 7853c3a9c75SAmlan Barua PetscFunctionBegin; 7863c3a9c75SAmlan Barua ierr = PetscTryMethod(A,"OutputTransformFFT_C",(Mat,Vec,Vec),(A,x,y));CHKERRQ(ierr); 7873c3a9c75SAmlan Barua PetscFunctionReturn(0); 7883c3a9c75SAmlan Barua } 78954efbe56SHong Zhang 7905b3e41ffSAmlan Barua /* 7915b3e41ffSAmlan Barua OutputTransformFFT_FFTW - Copies the FFTW output to the PETSc vector that user can use 7925b3e41ffSAmlan Barua Input A, x, y 7935b3e41ffSAmlan Barua A - FFTW matrix 7945b3e41ffSAmlan Barua x - FFTW vector 7955b3e41ffSAmlan Barua y - PETSc vector that user can read 7965b3e41ffSAmlan Barua Options Database Keys: 7975b3e41ffSAmlan Barua + -mat_fftw_plannerflags - set FFTW planner flags 7985b3e41ffSAmlan Barua 7995b3e41ffSAmlan Barua Level: intermediate 8005b3e41ffSAmlan Barua 8013c3a9c75SAmlan Barua */ 8023c3a9c75SAmlan Barua 8033c3a9c75SAmlan Barua EXTERN_C_BEGIN 8043c3a9c75SAmlan Barua #undef __FUNCT__ 8055b3e41ffSAmlan Barua #define __FUNCT__ "OutputTransformFFT_FTTW" 8065b3e41ffSAmlan Barua PetscErrorCode OutputTransformFFT_FFTW(Mat A,Vec x,Vec y) 8075b3e41ffSAmlan Barua { 8085b3e41ffSAmlan Barua PetscErrorCode ierr; 8095b3e41ffSAmlan Barua MPI_Comm comm=((PetscObject)A)->comm; 8105b3e41ffSAmlan Barua Mat_FFT *fft = (Mat_FFT*)A->data; 8115b3e41ffSAmlan Barua Mat_FFTW *fftw = (Mat_FFTW*)fft->data; 8125b3e41ffSAmlan Barua PetscInt N=fft->N, N1, n1 ,NM; 8135b3e41ffSAmlan Barua PetscInt ndim=fft->ndim,*dim=fft->dim,n=fft->n; 8145b3e41ffSAmlan Barua PetscInt low, *indx1, *indx2, tempindx, tempindx1, *indx3, *indx4; 81551d1eed7SAmlan Barua PetscInt i,j,k,rank,size; 8165b3e41ffSAmlan Barua ptrdiff_t alloc_local,local_n0,local_0_start; 8175b3e41ffSAmlan Barua ptrdiff_t local_n1,local_1_start; 8185b3e41ffSAmlan Barua VecScatter vecscat; 8195b3e41ffSAmlan Barua IS list1,list2; 8205b3e41ffSAmlan Barua 8215b3e41ffSAmlan Barua ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 8225b3e41ffSAmlan Barua ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 823cfe1ae98SAmlan Barua ierr = VecGetOwnershipRange(x,&low,PETSC_NULL); 8245b3e41ffSAmlan Barua printf("Local ownership starts at %d\n",low); 8255b3e41ffSAmlan Barua 8265b3e41ffSAmlan Barua switch (ndim){ 8275b3e41ffSAmlan Barua case 1: 828e5d7f247SAmlan Barua SETERRQ(comm,PETSC_ERR_SUP,"FFTW does not support parallel 1D real transform"); 8295b3e41ffSAmlan Barua break; 8305b3e41ffSAmlan Barua case 2: 8315b3e41ffSAmlan Barua alloc_local = fftw_mpi_local_size_2d_transposed(dim[0],dim[1]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 8325b3e41ffSAmlan Barua N1 = 2*dim[0]*(dim[1]/2+1); n1 = 2*local_n0*(dim[1]/2+1); 8335b3e41ffSAmlan Barua 8345b3e41ffSAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx1);CHKERRQ(ierr); 8355b3e41ffSAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx2);CHKERRQ(ierr); 8365b3e41ffSAmlan Barua printf("Val local_0_start = %ld\n",local_0_start); 8375b3e41ffSAmlan Barua 8385b3e41ffSAmlan Barua if (dim[1]%2==0) 8395b3e41ffSAmlan Barua NM = dim[1]+2; 8405b3e41ffSAmlan Barua else 8415b3e41ffSAmlan Barua NM = dim[1]+1; 8425b3e41ffSAmlan Barua 8435b3e41ffSAmlan Barua 8445b3e41ffSAmlan Barua 8455b3e41ffSAmlan Barua for (i=0;i<local_n0;i++){ 8465b3e41ffSAmlan Barua for (j=0;j<dim[1];j++){ 8475b3e41ffSAmlan Barua tempindx = i*dim[1] + j; 8485b3e41ffSAmlan Barua tempindx1 = i*NM + j; 8495b3e41ffSAmlan Barua indx1[tempindx]=local_0_start*dim[1]+tempindx; 8505b3e41ffSAmlan Barua indx2[tempindx]=low+tempindx1; 851cfe1ae98SAmlan Barua // printf("Val tempindx1 = %d\n",tempindx1); 852cfe1ae98SAmlan Barua // printf("index1 %d from proc %d is \n",indx1[tempindx],rank); 853cfe1ae98SAmlan Barua // printf("index2 %d from proc %d is \n",indx2[tempindx],rank); 854cfe1ae98SAmlan Barua // printf("-------------------------\n",indx2[tempindx],rank); 8555b3e41ffSAmlan Barua } 8565b3e41ffSAmlan Barua } 8575b3e41ffSAmlan Barua 8585b3e41ffSAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1],indx1,PETSC_COPY_VALUES,&list1);CHKERRQ(ierr); 8595b3e41ffSAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1],indx2,PETSC_COPY_VALUES,&list2);CHKERRQ(ierr); 8605b3e41ffSAmlan Barua 8615b3e41ffSAmlan Barua ierr = VecScatterCreate(x,list2,y,list1,&vecscat);CHKERRQ(ierr); 8625b3e41ffSAmlan Barua ierr = VecScatterBegin(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8635b3e41ffSAmlan Barua ierr = VecScatterEnd(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8645b3e41ffSAmlan Barua ierr = VecScatterDestroy(&vecscat);CHKERRQ(ierr); 8655b3e41ffSAmlan Barua break; 8665b3e41ffSAmlan Barua 8675b3e41ffSAmlan Barua case 3: 86851d1eed7SAmlan Barua alloc_local = fftw_mpi_local_size_3d_transposed(dim[0],dim[1],dim[2]/2+1,comm,&local_n0,&local_0_start,&local_n1,&local_1_start); 86951d1eed7SAmlan Barua N1 = 2*dim[0]*dim[1]*(dim[2]/2+1); n1 = 2*local_n0*dim[1]*(dim[2]/2+1); 87051d1eed7SAmlan Barua 87151d1eed7SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx1);CHKERRQ(ierr); 87251d1eed7SAmlan Barua ierr = PetscMalloc(sizeof(PetscInt)*((PetscInt)local_n0)*N1,&indx2);CHKERRQ(ierr); 87351d1eed7SAmlan Barua printf("Val local_0_start = %ld\n",local_0_start); 87451d1eed7SAmlan Barua 87551d1eed7SAmlan Barua if (dim[2]%2==0) 87651d1eed7SAmlan Barua NM = dim[2]+2; 87751d1eed7SAmlan Barua else 87851d1eed7SAmlan Barua NM = dim[2]+1; 87951d1eed7SAmlan Barua 88051d1eed7SAmlan Barua for (i=0;i<local_n0;i++){ 88151d1eed7SAmlan Barua for (j=0;j<dim[1];j++){ 88251d1eed7SAmlan Barua for (k=0;k<dim[2];k++){ 88351d1eed7SAmlan Barua tempindx = i*dim[1]*dim[2] + j*dim[2] + k; 88451d1eed7SAmlan Barua tempindx1 = i*dim[1]*NM + j*NM + k; 88551d1eed7SAmlan Barua indx1[tempindx]=local_0_start*dim[1]*dim[2]+tempindx; 88651d1eed7SAmlan Barua indx2[tempindx]=low+tempindx1; 88751d1eed7SAmlan Barua } 88851d1eed7SAmlan Barua // printf("Val tempindx1 = %d\n",tempindx1); 88951d1eed7SAmlan Barua // printf("index1 %d from proc %d is \n",indx1[tempindx],rank); 89051d1eed7SAmlan Barua // printf("index2 %d from proc %d is \n",indx2[tempindx],rank); 89151d1eed7SAmlan Barua // printf("-------------------------\n",indx2[tempindx],rank); 89251d1eed7SAmlan Barua } 89351d1eed7SAmlan Barua } 89451d1eed7SAmlan Barua 89551d1eed7SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1]*dim[2],indx1,PETSC_COPY_VALUES,&list1);CHKERRQ(ierr); 89651d1eed7SAmlan Barua ierr = ISCreateGeneral(comm,local_n0*dim[1]*dim[2],indx2,PETSC_COPY_VALUES,&list2);CHKERRQ(ierr); 89751d1eed7SAmlan Barua 89851d1eed7SAmlan Barua ierr = VecScatterCreate(x,list2,y,list1,&vecscat);CHKERRQ(ierr); 89951d1eed7SAmlan Barua ierr = VecScatterBegin(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 90051d1eed7SAmlan Barua ierr = VecScatterEnd(vecscat,x,y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 90151d1eed7SAmlan Barua ierr = VecScatterDestroy(&vecscat);CHKERRQ(ierr); 9025b3e41ffSAmlan Barua break; 9035b3e41ffSAmlan Barua 9045b3e41ffSAmlan Barua default: 9055b3e41ffSAmlan Barua SETERRQ(comm,PETSC_ERR_SUP,"Not Done Yet"); 9065b3e41ffSAmlan Barua break; 9075b3e41ffSAmlan Barua } 9085b3e41ffSAmlan Barua return 0; 9095b3e41ffSAmlan Barua } 9105b3e41ffSAmlan Barua EXTERN_C_END 9115b3e41ffSAmlan Barua 9125b3e41ffSAmlan Barua EXTERN_C_BEGIN 9135b3e41ffSAmlan Barua #undef __FUNCT__ 9143c3a9c75SAmlan Barua #define __FUNCT__ "MatCreate_FFTW" 9153c3a9c75SAmlan Barua /* 9163c3a9c75SAmlan Barua MatCreate_FFTW - Creates a matrix object that provides FFT 9173c3a9c75SAmlan Barua via the external package FFTW 9183c3a9c75SAmlan Barua Options Database Keys: 9193c3a9c75SAmlan Barua + -mat_fftw_plannerflags - set FFTW planner flags 9203c3a9c75SAmlan Barua 9213c3a9c75SAmlan Barua Level: intermediate 9223c3a9c75SAmlan Barua 9233c3a9c75SAmlan Barua */ 9243c3a9c75SAmlan Barua 925b2b77a04SHong Zhang PetscErrorCode MatCreate_FFTW(Mat A) 926b2b77a04SHong Zhang { 927b2b77a04SHong Zhang PetscErrorCode ierr; 928b2b77a04SHong Zhang MPI_Comm comm=((PetscObject)A)->comm; 929b2b77a04SHong Zhang Mat_FFT *fft=(Mat_FFT*)A->data; 930b2b77a04SHong Zhang Mat_FFTW *fftw; 931b2b77a04SHong Zhang PetscInt n=fft->n,N=fft->N,ndim=fft->ndim,*dim = fft->dim; 932b2b77a04SHong Zhang const char *p_flags[]={"FFTW_ESTIMATE","FFTW_MEASURE","FFTW_PATIENT","FFTW_EXHAUSTIVE"}; 933b2b77a04SHong Zhang PetscBool flg; 934b3a17365SAmlan Barua PetscInt p_flag,partial_dim=1,ctr,N1; 93511902ff2SHong Zhang PetscMPIInt size,rank; 936b3a17365SAmlan Barua ptrdiff_t *pdim, temp; 9375b3e41ffSAmlan Barua ptrdiff_t local_n1,local_1_start; 938b2b77a04SHong Zhang 939b2b77a04SHong Zhang PetscFunctionBegin; 9403c3a9c75SAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 9413c3a9c75SAmlan Barua // SETERRQ(comm,PETSC_ERR_SUP,"not support for real numbers"); 9423c3a9c75SAmlan Barua //#endif 943b2b77a04SHong Zhang 944b2b77a04SHong Zhang ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 94511902ff2SHong Zhang ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 94654dd5118SAmlan Barua ierr = MPI_Barrier(PETSC_COMM_WORLD); 947c92418ccSAmlan Barua 94811902ff2SHong Zhang pdim = (ptrdiff_t *)calloc(ndim,sizeof(ptrdiff_t)); 94911902ff2SHong Zhang pdim[0] = dim[0]; 95011902ff2SHong Zhang for(ctr=1;ctr<ndim;ctr++) 95111902ff2SHong Zhang { 9526882372aSHong Zhang partial_dim *= dim[ctr]; 95311902ff2SHong Zhang pdim[ctr] = dim[ctr]; 9546882372aSHong Zhang } 9553c3a9c75SAmlan Barua //#if !defined(PETSC_USE_COMPLEX) 9563c3a9c75SAmlan Barua // SETERRQ(comm,PETSC_ERR_SUP,"not support for real numbers"); 9573c3a9c75SAmlan Barua //#endif 9583c3a9c75SAmlan Barua 95911902ff2SHong Zhang // printf("partial dimension is %d",partial_dim); 960b2b77a04SHong Zhang if (size == 1) { 961b2b77a04SHong Zhang ierr = MatSetSizes(A,N,N,N,N);CHKERRQ(ierr); 962b2b77a04SHong Zhang n = N; 963b2b77a04SHong Zhang } else { 9646882372aSHong Zhang ptrdiff_t alloc_local,local_n0,local_0_start,local_n1,local_1_end; 965b2b77a04SHong Zhang switch (ndim){ 966b2b77a04SHong Zhang case 1: 9673c3a9c75SAmlan Barua #if !defined(PETSC_USE_COMPLEX) 9683c3a9c75SAmlan Barua SETERRQ(comm,PETSC_ERR_SUP,"FFTW does not support parallel 1D real transform"); 969e5d7f247SAmlan Barua #else 9706882372aSHong Zhang alloc_local = fftw_mpi_local_size_1d(dim[0],comm,FFTW_FORWARD,FFTW_ESTIMATE,&local_n0,&local_0_start,&local_n1,&local_1_end); 9716882372aSHong Zhang n = (PetscInt)local_n0; 9726882372aSHong Zhang ierr = MatSetSizes(A,n,n,N,N);CHKERRQ(ierr); 973e5d7f247SAmlan Barua #endif 9743c3a9c75SAmlan Barua // PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetVecs1DC_C","MatGetVecs1DC_FFTW",MatGetVecs1DC_FFTW); 975b2b77a04SHong Zhang break; 976b2b77a04SHong Zhang case 2: 9775b3e41ffSAmlan Barua #if defined(PETSC_USE_COMPLEX) 978b2b77a04SHong Zhang alloc_local = fftw_mpi_local_size_2d(dim[0],dim[1],comm,&local_n0,&local_0_start); 979b2b77a04SHong Zhang /* 980b2b77a04SHong Zhang PetscMPIInt rank; 981b2b77a04SHong Zhang PetscSynchronizedPrintf(comm,"[%d] MatCreateSeqFFTW: local_n0, local_0_start %d %d, N %d,dim %d, %d\n",rank,(PetscInt)local_n0*dim[1],(PetscInt)local_0_start,m,dim[0],dim[1]); 982b2b77a04SHong Zhang PetscSynchronizedFlush(comm); 983b2b77a04SHong Zhang */ 984b2b77a04SHong Zhang n = (PetscInt)local_n0*dim[1]; 985b2b77a04SHong Zhang ierr = MatSetSizes(A,n,n,N,N);CHKERRQ(ierr); 9865b3e41ffSAmlan Barua #else 9875b3e41ffSAmlan Barua alloc_local = fftw_mpi_local_size_2d_transposed(dim[0],dim[1]/2+1,PETSC_COMM_WORLD,&local_n0,&local_0_start,&local_n1,&local_1_start); 9885b3e41ffSAmlan Barua n = 2*(PetscInt)local_n0*(dim[1]/2+1); 9895b3e41ffSAmlan Barua ierr = MatSetSizes(A,n,n,2*dim[0]*(dim[1]/2+1),2*dim[0]*(dim[1]/2+1)); 9905b3e41ffSAmlan Barua #endif 991b2b77a04SHong Zhang break; 992b2b77a04SHong Zhang case 3: 99311902ff2SHong Zhang // printf("The value of alloc local is %d",alloc_local); 99451d1eed7SAmlan Barua #if defined(PETSC_USE_COMPLEX) 99551d1eed7SAmlan Barua alloc_local = fftw_mpi_local_size_3d(dim[0],dim[1],dim[2],comm,&local_n0,&local_0_start); 9966882372aSHong Zhang n = (PetscInt)local_n0*dim[1]*dim[2]; 9976882372aSHong Zhang ierr = MatSetSizes(A,n,n,N,N);CHKERRQ(ierr); 99851d1eed7SAmlan Barua #else 99951d1eed7SAmlan Barua printf("The code comes here\n"); 100051d1eed7SAmlan Barua alloc_local = fftw_mpi_local_size_3d_transposed(dim[0],dim[1],dim[2]/2+1,PETSC_COMM_WORLD,&local_n0,&local_0_start,&local_n1,&local_1_start); 100151d1eed7SAmlan Barua n = 2*(PetscInt)local_n0*dim[1]*(dim[2]/2+1); 100251d1eed7SAmlan Barua ierr = MatSetSizes(A,n,n,2*dim[0]*dim[1]*(dim[2]/2+1),2*dim[0]*dim[1]*(dim[2]/2+1)); 100351d1eed7SAmlan Barua #endif 1004b2b77a04SHong Zhang break; 1005b2b77a04SHong Zhang default: 1006b3a17365SAmlan Barua #if defined(PETSC_USE_COMPLEX) 100711902ff2SHong Zhang alloc_local = fftw_mpi_local_size(ndim,pdim,comm,&local_n0,&local_0_start); 1008c92418ccSAmlan Barua // printf("The value of alloc local is %ld from process %d\n",alloc_local,rank); 100911902ff2SHong Zhang // alloc_local = fftw_mpi_local_size(ndim,dim,comm,&local_n0,&local_0_start); 10106882372aSHong Zhang n = (PetscInt)local_n0*partial_dim; 101111902ff2SHong Zhang // printf("New partial dimension is %d %d %d",n,N,ndim); 10126882372aSHong Zhang ierr = MatSetSizes(A,n,n,N,N);CHKERRQ(ierr); 1013b3a17365SAmlan Barua #else 1014b3a17365SAmlan Barua temp = pdim[ndim-1]; 1015b3a17365SAmlan Barua pdim[ndim-1]= temp/2 + 1; 1016b3a17365SAmlan Barua printf("For Multi dim case temp = %ld, pdim[ndim-1] = %ld\n",temp,pdim[ndim-1]); 1017b3a17365SAmlan Barua alloc_local = fftw_mpi_local_size_transposed(ndim,pdim,PETSC_COMM_WORLD,&local_n0,&local_0_start,&local_n1,&local_1_start); 1018b3a17365SAmlan Barua n = 2*(PetscInt)local_n0*partial_dim*pdim[ndim-1]/temp; 1019b3a17365SAmlan Barua N1 = 2*N*(PetscInt)pdim[ndim-1]/((PetscInt) temp); 1020b3a17365SAmlan Barua pdim[ndim-1] = temp; 1021b3a17365SAmlan Barua printf("For Multi dim case n = %d, N1 = %d\n",n,N1); 1022b3a17365SAmlan Barua ierr = MatSetSizes(A,n,n,N1,N1);CHKERRQ(ierr); 1023b3a17365SAmlan Barua #endif 1024b2b77a04SHong Zhang break; 1025b2b77a04SHong Zhang } 1026b2b77a04SHong Zhang } 1027b2b77a04SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,MATFFTW);CHKERRQ(ierr); 1028b2b77a04SHong Zhang ierr = PetscNewLog(A,Mat_FFTW,&fftw);CHKERRQ(ierr); 1029b2b77a04SHong Zhang fft->data = (void*)fftw; 1030b2b77a04SHong Zhang 1031b2b77a04SHong Zhang fft->n = n; 1032c92418ccSAmlan Barua fftw->ndim_fftw = (ptrdiff_t)ndim; // This is dimension of fft 1033e5d7f247SAmlan Barua fftw->partial_dim = partial_dim; 1034c92418ccSAmlan Barua ierr = PetscMalloc(ndim*sizeof(ptrdiff_t), (ptrdiff_t *)&(fftw->dim_fftw));CHKERRQ(ierr); 1035b1301b2eSHong Zhang for(ctr=0;ctr<ndim;ctr++) (fftw->dim_fftw)[ctr]=dim[ctr]; 1036c92418ccSAmlan Barua 1037b2b77a04SHong Zhang fftw->p_forward = 0; 1038b2b77a04SHong Zhang fftw->p_backward = 0; 1039b2b77a04SHong Zhang fftw->p_flag = FFTW_ESTIMATE; 1040b2b77a04SHong Zhang 1041b2b77a04SHong Zhang if (size == 1){ 1042b2b77a04SHong Zhang A->ops->mult = MatMult_SeqFFTW; 1043b2b77a04SHong Zhang A->ops->multtranspose = MatMultTranspose_SeqFFTW; 1044b2b77a04SHong Zhang } else { 1045b2b77a04SHong Zhang A->ops->mult = MatMult_MPIFFTW; 1046b2b77a04SHong Zhang A->ops->multtranspose = MatMultTranspose_MPIFFTW; 1047b2b77a04SHong Zhang } 1048b2b77a04SHong Zhang fft->matdestroy = MatDestroy_FFTW; 1049b2b77a04SHong Zhang A->ops->getvecs = MatGetVecs_FFTW; 1050b2b77a04SHong Zhang A->assembled = PETSC_TRUE; 10513c3a9c75SAmlan Barua #if !defined(PETSC_USE_COMPLEX) 10523c3a9c75SAmlan Barua PetscObjectComposeFunctionDynamic((PetscObject)A,"InputTransformFFT_C","InputTransformFFT_FFTW",InputTransformFFT_FFTW); 10535b3e41ffSAmlan Barua PetscObjectComposeFunctionDynamic((PetscObject)A,"OutputTransformFFT_C","OutputTransformFFT_FFTW",OutputTransformFFT_FFTW); 10543c3a9c75SAmlan Barua #endif 1055b2b77a04SHong Zhang 1056b2b77a04SHong Zhang /* get runtime options */ 1057b2b77a04SHong Zhang ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"FFTW Options","Mat");CHKERRQ(ierr); 1058b2b77a04SHong Zhang ierr = PetscOptionsEList("-mat_fftw_plannerflags","Planner Flags","None",p_flags,4,p_flags[0],&p_flag,&flg);CHKERRQ(ierr); 1059b2b77a04SHong Zhang if (flg) {fftw->p_flag = (unsigned)p_flag;} 1060b2b77a04SHong Zhang PetscOptionsEnd(); 1061b2b77a04SHong Zhang PetscFunctionReturn(0); 1062b2b77a04SHong Zhang } 1063b2b77a04SHong Zhang EXTERN_C_END 10643c3a9c75SAmlan Barua 10653c3a9c75SAmlan Barua 10663c3a9c75SAmlan Barua 10673c3a9c75SAmlan Barua 1068