163c07aadSStefano Zampini 263c07aadSStefano Zampini /* 363c07aadSStefano Zampini Creates hypre ijmatrix from PETSc matrix 463c07aadSStefano Zampini */ 5225daaf8SStefano Zampini 6225daaf8SStefano Zampini /*MC 7225daaf8SStefano Zampini MATHYPRE - MATHYPRE = "hypre" - A matrix type to be used for sequential and parallel sparse matrices 8225daaf8SStefano Zampini based on the hypre IJ interface. 9225daaf8SStefano Zampini 10225daaf8SStefano Zampini Level: intermediate 11225daaf8SStefano Zampini 12225daaf8SStefano Zampini .seealso: MatCreate() 13225daaf8SStefano Zampini M*/ 14225daaf8SStefano Zampini 15dd9c0a25Sstefano_zampini #include <petscmathypre.h> 1663c07aadSStefano Zampini #include <petsc/private/matimpl.h> 1763c07aadSStefano Zampini #include <../src/mat/impls/hypre/mhypre.h> 1863c07aadSStefano Zampini #include <../src/mat/impls/aij/mpi/mpiaij.h> 1958968eb6SStefano Zampini #include <../src/vec/vec/impls/hypre/vhyp.h> 2058968eb6SStefano Zampini #include <HYPRE.h> 21c1a070e6SStefano Zampini #include <HYPRE_utilities.h> 22cd8bc7baSStefano Zampini #include <_hypre_parcsr_ls.h> 2363c07aadSStefano Zampini 2463c07aadSStefano Zampini static PetscErrorCode MatHYPRE_CreateFromMat(Mat,Mat_HYPRE*); 2563c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat,Mat,HYPRE_IJMatrix); 2663c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat,HYPRE_IJMatrix); 2763c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat,HYPRE_IJMatrix); 2863c07aadSStefano Zampini static PetscErrorCode MatHYPRE_MultKernel_Private(Mat,Vec,Vec,PetscBool); 29225daaf8SStefano Zampini static PetscErrorCode hypre_array_destroy(void*); 3063c07aadSStefano Zampini 3163c07aadSStefano Zampini #undef __FUNCT__ 3263c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixPreallocate" 3363c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMatrix ij) 3463c07aadSStefano Zampini { 3563c07aadSStefano Zampini PetscErrorCode ierr; 3663c07aadSStefano Zampini PetscInt i,n_d,n_o; 3763c07aadSStefano Zampini const PetscInt *ia_d,*ia_o; 3863c07aadSStefano Zampini PetscBool done_d=PETSC_FALSE,done_o=PETSC_FALSE; 3963c07aadSStefano Zampini PetscInt *nnz_d=NULL,*nnz_o=NULL; 4063c07aadSStefano Zampini 4163c07aadSStefano Zampini PetscFunctionBegin; 4263c07aadSStefano Zampini if (A_d) { /* determine number of nonzero entries in local diagonal part */ 4363c07aadSStefano Zampini ierr = MatGetRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,&n_d,&ia_d,NULL,&done_d);CHKERRQ(ierr); 4463c07aadSStefano Zampini if (done_d) { 4563c07aadSStefano Zampini ierr = PetscMalloc1(n_d,&nnz_d);CHKERRQ(ierr); 4663c07aadSStefano Zampini for (i=0; i<n_d; i++) { 4763c07aadSStefano Zampini nnz_d[i] = ia_d[i+1] - ia_d[i]; 4863c07aadSStefano Zampini } 4963c07aadSStefano Zampini } 5063c07aadSStefano Zampini ierr = MatRestoreRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,NULL,&ia_d,NULL,&done_d);CHKERRQ(ierr); 5163c07aadSStefano Zampini } 5263c07aadSStefano Zampini if (A_o) { /* determine number of nonzero entries in local off-diagonal part */ 5363c07aadSStefano Zampini ierr = MatGetRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);CHKERRQ(ierr); 5463c07aadSStefano Zampini if (done_o) { 5563c07aadSStefano Zampini ierr = PetscMalloc1(n_o,&nnz_o);CHKERRQ(ierr); 5663c07aadSStefano Zampini for (i=0; i<n_o; i++) { 5763c07aadSStefano Zampini nnz_o[i] = ia_o[i+1] - ia_o[i]; 5863c07aadSStefano Zampini } 5963c07aadSStefano Zampini } 6063c07aadSStefano Zampini ierr = MatRestoreRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);CHKERRQ(ierr); 6163c07aadSStefano Zampini } 6263c07aadSStefano Zampini if (done_d) { /* set number of nonzeros in HYPRE IJ matrix */ 6363c07aadSStefano Zampini if (!done_o) { /* only diagonal part */ 6463c07aadSStefano Zampini ierr = PetscMalloc1(n_d,&nnz_o);CHKERRQ(ierr); 6563c07aadSStefano Zampini for (i=0; i<n_d; i++) { 6663c07aadSStefano Zampini nnz_o[i] = 0; 6763c07aadSStefano Zampini } 6863c07aadSStefano Zampini } 6963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,(HYPRE_Int *)nnz_d,(HYPRE_Int *)nnz_o)); 7063c07aadSStefano Zampini ierr = PetscFree(nnz_d);CHKERRQ(ierr); 7163c07aadSStefano Zampini ierr = PetscFree(nnz_o);CHKERRQ(ierr); 7263c07aadSStefano Zampini } 7363c07aadSStefano Zampini PetscFunctionReturn(0); 7463c07aadSStefano Zampini } 7563c07aadSStefano Zampini 7663c07aadSStefano Zampini #undef __FUNCT__ 7763c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_CreateFromMat" 7863c07aadSStefano Zampini static PetscErrorCode MatHYPRE_CreateFromMat(Mat A, Mat_HYPRE *hA) 7963c07aadSStefano Zampini { 8063c07aadSStefano Zampini PetscErrorCode ierr; 8163c07aadSStefano Zampini PetscInt rstart,rend,cstart,cend; 8263c07aadSStefano Zampini 8363c07aadSStefano Zampini PetscFunctionBegin; 84d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 85d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 8663c07aadSStefano Zampini rstart = A->rmap->rstart; 8763c07aadSStefano Zampini rend = A->rmap->rend; 8863c07aadSStefano Zampini cstart = A->cmap->rstart; 8963c07aadSStefano Zampini cend = A->cmap->rend; 9063c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rstart,rend-1,cstart,cend-1,&hA->ij)); 9163c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 9263c07aadSStefano Zampini { 9363c07aadSStefano Zampini PetscBool same; 9463c07aadSStefano Zampini Mat A_d,A_o; 9563c07aadSStefano Zampini const PetscInt *colmap; 9663c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&same);CHKERRQ(ierr); 9763c07aadSStefano Zampini if (same) { 9863c07aadSStefano Zampini ierr = MatMPIAIJGetSeqAIJ(A,&A_d,&A_o,&colmap);CHKERRQ(ierr); 9963c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A_d,A_o,hA->ij);CHKERRQ(ierr); 10063c07aadSStefano Zampini PetscFunctionReturn(0); 10163c07aadSStefano Zampini } 10263c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&same);CHKERRQ(ierr); 10363c07aadSStefano Zampini if (same) { 10463c07aadSStefano Zampini ierr = MatMPIBAIJGetSeqBAIJ(A,&A_d,&A_o,&colmap);CHKERRQ(ierr); 10563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A_d,A_o,hA->ij);CHKERRQ(ierr); 10663c07aadSStefano Zampini PetscFunctionReturn(0); 10763c07aadSStefano Zampini } 10863c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&same);CHKERRQ(ierr); 10963c07aadSStefano Zampini if (same) { 11063c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A,NULL,hA->ij);CHKERRQ(ierr); 11163c07aadSStefano Zampini PetscFunctionReturn(0); 11263c07aadSStefano Zampini } 11363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&same);CHKERRQ(ierr); 11463c07aadSStefano Zampini if (same) { 11563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A,NULL,hA->ij);CHKERRQ(ierr); 11663c07aadSStefano Zampini PetscFunctionReturn(0); 11763c07aadSStefano Zampini } 11863c07aadSStefano Zampini } 11963c07aadSStefano Zampini PetscFunctionReturn(0); 12063c07aadSStefano Zampini } 12163c07aadSStefano Zampini 12263c07aadSStefano Zampini #undef __FUNCT__ 12363c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixCopy" 12463c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixCopy(Mat A, HYPRE_IJMatrix ij) 12563c07aadSStefano Zampini { 12663c07aadSStefano Zampini PetscErrorCode ierr; 12763c07aadSStefano Zampini PetscInt i,rstart,rend,ncols,nr,nc; 12863c07aadSStefano Zampini const PetscScalar *values; 12963c07aadSStefano Zampini const PetscInt *cols; 13063c07aadSStefano Zampini PetscBool flg; 13163c07aadSStefano Zampini 13263c07aadSStefano Zampini PetscFunctionBegin; 13363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);CHKERRQ(ierr); 13463c07aadSStefano Zampini ierr = MatGetSize(A,&nr,&nc);CHKERRQ(ierr); 13563c07aadSStefano Zampini if (flg && nr == nc) { 13663c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixFastCopy_MPIAIJ(A,ij);CHKERRQ(ierr); 13763c07aadSStefano Zampini PetscFunctionReturn(0); 13863c07aadSStefano Zampini } 13963c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);CHKERRQ(ierr); 14063c07aadSStefano Zampini if (flg) { 14163c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixFastCopy_SeqAIJ(A,ij);CHKERRQ(ierr); 14263c07aadSStefano Zampini PetscFunctionReturn(0); 14363c07aadSStefano Zampini } 14463c07aadSStefano Zampini 14563c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 14663c07aadSStefano Zampini ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 14763c07aadSStefano Zampini for (i=rstart; i<rend; i++) { 14863c07aadSStefano Zampini ierr = MatGetRow(A,i,&ncols,&cols,&values);CHKERRQ(ierr); 14963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetValues,(ij,1,(HYPRE_Int *)&ncols,(HYPRE_Int *)&i,(HYPRE_Int *)cols,values)); 15063c07aadSStefano Zampini ierr = MatRestoreRow(A,i,&ncols,&cols,&values);CHKERRQ(ierr); 15163c07aadSStefano Zampini } 15263c07aadSStefano Zampini PetscFunctionReturn(0); 15363c07aadSStefano Zampini } 15463c07aadSStefano Zampini 15563c07aadSStefano Zampini #undef __FUNCT__ 15663c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixFastCopy_SeqAIJ" 15763c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat A, HYPRE_IJMatrix ij) 15863c07aadSStefano Zampini { 15963c07aadSStefano Zampini PetscErrorCode ierr; 16063c07aadSStefano Zampini Mat_SeqAIJ *pdiag = (Mat_SeqAIJ*)A->data; 16158968eb6SStefano Zampini HYPRE_Int type; 16263c07aadSStefano Zampini hypre_ParCSRMatrix *par_matrix; 16363c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 16463c07aadSStefano Zampini hypre_CSRMatrix *hdiag; 16563c07aadSStefano Zampini 16663c07aadSStefano Zampini PetscFunctionBegin; 16763c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 168ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(ij,&type)); 169ea9daf28SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 170ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(ij,(void**)&par_matrix)); 17163c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(par_matrix); 17263c07aadSStefano Zampini /* 17363c07aadSStefano Zampini this is the Hack part where we monkey directly with the hypre datastructures 17463c07aadSStefano Zampini */ 17563c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->i,pdiag->i,(A->rmap->n + 1)*sizeof(PetscInt)); 17663c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->j,pdiag->j,pdiag->nz*sizeof(PetscInt)); 17763c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar)); 178ea9daf28SStefano Zampini 179ea9daf28SStefano Zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); 18063c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 18163c07aadSStefano Zampini PetscFunctionReturn(0); 18263c07aadSStefano Zampini } 18363c07aadSStefano Zampini 18463c07aadSStefano Zampini #undef __FUNCT__ 18563c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixFastCopy_MPIAIJ" 18663c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) 18763c07aadSStefano Zampini { 18863c07aadSStefano Zampini PetscErrorCode ierr; 18963c07aadSStefano Zampini Mat_MPIAIJ *pA = (Mat_MPIAIJ*)A->data; 19063c07aadSStefano Zampini Mat_SeqAIJ *pdiag,*poffd; 19163c07aadSStefano Zampini PetscInt i,*garray = pA->garray,*jj,cstart,*pjj; 19258968eb6SStefano Zampini HYPRE_Int type; 19363c07aadSStefano Zampini hypre_ParCSRMatrix *par_matrix; 19463c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 19563c07aadSStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 19663c07aadSStefano Zampini 19763c07aadSStefano Zampini PetscFunctionBegin; 19863c07aadSStefano Zampini pdiag = (Mat_SeqAIJ*) pA->A->data; 19963c07aadSStefano Zampini poffd = (Mat_SeqAIJ*) pA->B->data; 20063c07aadSStefano Zampini /* cstart is only valid for square MPIAIJ layed out in the usual way */ 20163c07aadSStefano Zampini ierr = MatGetOwnershipRange(A,&cstart,NULL);CHKERRQ(ierr); 20263c07aadSStefano Zampini 20363c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 204ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(ij,&type)); 205ea9daf28SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 206ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(ij,(void**)&par_matrix)); 20763c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(par_matrix); 20863c07aadSStefano Zampini hoffd = hypre_ParCSRMatrixOffd(par_matrix); 20963c07aadSStefano Zampini 21063c07aadSStefano Zampini /* 21163c07aadSStefano Zampini this is the Hack part where we monkey directly with the hypre datastructures 21263c07aadSStefano Zampini */ 21363c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->i,pdiag->i,(pA->A->rmap->n + 1)*sizeof(PetscInt)); 21463c07aadSStefano Zampini /* need to shift the diag column indices (hdiag->j) back to global numbering since hypre is expecting this */ 21563c07aadSStefano Zampini jj = (PetscInt*)hdiag->j; 21663c07aadSStefano Zampini pjj = (PetscInt*)pdiag->j; 21763c07aadSStefano Zampini for (i=0; i<pdiag->nz; i++) jj[i] = cstart + pjj[i]; 21863c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar)); 21963c07aadSStefano Zampini ierr = PetscMemcpy(hoffd->i,poffd->i,(pA->A->rmap->n + 1)*sizeof(PetscInt)); 22063c07aadSStefano Zampini /* need to move the offd column indices (hoffd->j) back to global numbering since hypre is expecting this 22163c07aadSStefano Zampini If we hacked a hypre a bit more we might be able to avoid this step */ 22263c07aadSStefano Zampini jj = (PetscInt*) hoffd->j; 22363c07aadSStefano Zampini pjj = (PetscInt*) poffd->j; 22463c07aadSStefano Zampini for (i=0; i<poffd->nz; i++) jj[i] = garray[pjj[i]]; 22563c07aadSStefano Zampini ierr = PetscMemcpy(hoffd->data,poffd->a,poffd->nz*sizeof(PetscScalar)); 22663c07aadSStefano Zampini 227ea9daf28SStefano Zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); 22863c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 22963c07aadSStefano Zampini PetscFunctionReturn(0); 23063c07aadSStefano Zampini } 23163c07aadSStefano Zampini 23263c07aadSStefano Zampini #undef __FUNCT__ 2332df22349SStefano Zampini #define __FUNCT__ "MatConvert_HYPRE_IS" 2342df22349SStefano Zampini static PetscErrorCode MatConvert_HYPRE_IS(Mat A, MatType mtype, MatReuse reuse, Mat* B) 2352df22349SStefano Zampini { 2362df22349SStefano Zampini Mat_HYPRE* mhA = (Mat_HYPRE*)(A->data); 2372df22349SStefano Zampini Mat lA; 2382df22349SStefano Zampini ISLocalToGlobalMapping rl2g,cl2g; 2392df22349SStefano Zampini IS is; 2402df22349SStefano Zampini hypre_ParCSRMatrix *hA; 2412df22349SStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 2422df22349SStefano Zampini MPI_Comm comm; 2432df22349SStefano Zampini PetscScalar *hdd,*hod,*aa,*data; 2447d968826Sstefano_zampini HYPRE_Int *col_map_offd,*hdi,*hdj,*hoi,*hoj; 2452df22349SStefano Zampini PetscInt *ii,*jj,*iptr,*jptr; 2462df22349SStefano Zampini PetscInt cum,dr,dc,oc,str,stc,nnz,i,jd,jo,M,N; 24758968eb6SStefano Zampini HYPRE_Int type; 2482df22349SStefano Zampini PetscErrorCode ierr; 2492df22349SStefano Zampini 2502df22349SStefano Zampini PetscFunctionBegin; 251a1787963SStefano Zampini comm = PetscObjectComm((PetscObject)A); 2522df22349SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(mhA->ij,&type)); 2532df22349SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 2542df22349SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(mhA->ij,(void**)&hA)); 2552df22349SStefano Zampini M = hypre_ParCSRMatrixGlobalNumRows(hA); 2562df22349SStefano Zampini N = hypre_ParCSRMatrixGlobalNumCols(hA); 2572df22349SStefano Zampini str = hypre_ParCSRMatrixFirstRowIndex(hA); 2582df22349SStefano Zampini stc = hypre_ParCSRMatrixFirstColDiag(hA); 2592df22349SStefano Zampini hdiag = hypre_ParCSRMatrixDiag(hA); 2602df22349SStefano Zampini hoffd = hypre_ParCSRMatrixOffd(hA); 2612df22349SStefano Zampini dr = hypre_CSRMatrixNumRows(hdiag); 2622df22349SStefano Zampini dc = hypre_CSRMatrixNumCols(hdiag); 2632df22349SStefano Zampini nnz = hypre_CSRMatrixNumNonzeros(hdiag); 2642df22349SStefano Zampini hdi = hypre_CSRMatrixI(hdiag); 2652df22349SStefano Zampini hdj = hypre_CSRMatrixJ(hdiag); 2662df22349SStefano Zampini hdd = hypre_CSRMatrixData(hdiag); 2672df22349SStefano Zampini oc = hypre_CSRMatrixNumCols(hoffd); 2682df22349SStefano Zampini nnz += hypre_CSRMatrixNumNonzeros(hoffd); 2692df22349SStefano Zampini hoi = hypre_CSRMatrixI(hoffd); 2702df22349SStefano Zampini hoj = hypre_CSRMatrixJ(hoffd); 2712df22349SStefano Zampini hod = hypre_CSRMatrixData(hoffd); 2722df22349SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 2732df22349SStefano Zampini PetscInt *aux; 2742df22349SStefano Zampini 2752df22349SStefano Zampini /* generate l2g maps for rows and cols */ 2762df22349SStefano Zampini ierr = ISCreateStride(comm,dr,str,1,&is);CHKERRQ(ierr); 2772df22349SStefano Zampini ierr = ISLocalToGlobalMappingCreateIS(is,&rl2g);CHKERRQ(ierr); 2782df22349SStefano Zampini ierr = ISDestroy(&is);CHKERRQ(ierr); 2792df22349SStefano Zampini col_map_offd = hypre_ParCSRMatrixColMapOffd(hA); 2802df22349SStefano Zampini ierr = PetscMalloc1(dc+oc,&aux);CHKERRQ(ierr); 2812df22349SStefano Zampini for (i=0; i<dc; i++) aux[i] = i+stc; 2822df22349SStefano Zampini for (i=0; i<oc; i++) aux[i+dc] = col_map_offd[i]; 2832df22349SStefano Zampini ierr = ISCreateGeneral(comm,dc+oc,aux,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); 2842df22349SStefano Zampini ierr = ISLocalToGlobalMappingCreateIS(is,&cl2g);CHKERRQ(ierr); 2852df22349SStefano Zampini ierr = ISDestroy(&is);CHKERRQ(ierr); 2862df22349SStefano Zampini /* create MATIS object */ 2872df22349SStefano Zampini ierr = MatCreate(comm,B);CHKERRQ(ierr); 2882df22349SStefano Zampini ierr = MatSetSizes(*B,dr,dc,M,N);CHKERRQ(ierr); 2892df22349SStefano Zampini ierr = MatSetType(*B,MATIS);CHKERRQ(ierr); 2902df22349SStefano Zampini ierr = MatSetLocalToGlobalMapping(*B,rl2g,cl2g);CHKERRQ(ierr); 2912df22349SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&rl2g);CHKERRQ(ierr); 2922df22349SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&cl2g);CHKERRQ(ierr); 2932df22349SStefano Zampini 2942df22349SStefano Zampini /* allocate CSR for local matrix */ 2952df22349SStefano Zampini ierr = PetscMalloc1(dr+1,&iptr);CHKERRQ(ierr); 2962df22349SStefano Zampini ierr = PetscMalloc1(nnz,&jptr);CHKERRQ(ierr); 2972df22349SStefano Zampini ierr = PetscMalloc1(nnz,&data);CHKERRQ(ierr); 2982df22349SStefano Zampini } else { 2992df22349SStefano Zampini PetscInt nr; 3002df22349SStefano Zampini PetscBool done; 3012df22349SStefano Zampini ierr = MatISGetLocalMat(*B,&lA);CHKERRQ(ierr); 3022df22349SStefano Zampini ierr = MatGetRowIJ(lA,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&iptr,(const PetscInt**)&jptr,&done);CHKERRQ(ierr); 3032df22349SStefano Zampini if (nr != dr) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of rows in local mat! %D != %D",nr,dr); 3042df22349SStefano Zampini if (iptr[nr] < nnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in local mat! reuse %D requested %D",iptr[nr],nnz); 3052df22349SStefano Zampini ierr = MatSeqAIJGetArray(lA,&data);CHKERRQ(ierr); 3062df22349SStefano Zampini } 3072df22349SStefano Zampini /* merge local matrices */ 3082df22349SStefano Zampini ii = iptr; 3092df22349SStefano Zampini jj = jptr; 3102df22349SStefano Zampini aa = data; 3112df22349SStefano Zampini *ii = *(hdi++) + *(hoi++); 3122df22349SStefano Zampini for (jd=0,jo=0,cum=0; *ii<nnz; cum++) { 3132df22349SStefano Zampini PetscScalar *aold = aa; 3142df22349SStefano Zampini PetscInt *jold = jj,nc = jd+jo; 3152df22349SStefano Zampini for (; jd<*hdi; jd++) { *jj++ = *hdj++; *aa++ = *hdd++; } 3162df22349SStefano Zampini for (; jo<*hoi; jo++) { *jj++ = *hoj++ + dc; *aa++ = *hod++; } 3172df22349SStefano Zampini *(++ii) = *(hdi++) + *(hoi++); 3182df22349SStefano Zampini ierr = PetscSortIntWithScalarArray(jd+jo-nc,jold,aold);CHKERRQ(ierr); 3192df22349SStefano Zampini } 3202df22349SStefano Zampini for (; cum<dr; cum++) *(++ii) = nnz; 3212df22349SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 322a033916dSStefano Zampini Mat_SeqAIJ* a; 323a033916dSStefano Zampini 3242df22349SStefano Zampini ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,dr,dc+oc,iptr,jptr,data,&lA);CHKERRQ(ierr); 3252df22349SStefano Zampini ierr = MatISSetLocalMat(*B,lA);CHKERRQ(ierr); 326a033916dSStefano Zampini /* hack SeqAIJ */ 327a033916dSStefano Zampini a = (Mat_SeqAIJ*)(lA->data); 328a033916dSStefano Zampini a->free_a = PETSC_TRUE; 329a033916dSStefano Zampini a->free_ij = PETSC_TRUE; 3302df22349SStefano Zampini ierr = MatDestroy(&lA);CHKERRQ(ierr); 3312df22349SStefano Zampini } 3322df22349SStefano Zampini ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3332df22349SStefano Zampini ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3342df22349SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 3352df22349SStefano Zampini ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 3362df22349SStefano Zampini } 3372df22349SStefano Zampini PetscFunctionReturn(0); 3382df22349SStefano Zampini } 3392df22349SStefano Zampini 3402df22349SStefano Zampini #undef __FUNCT__ 34163c07aadSStefano Zampini #define __FUNCT__ "MatConvert_AIJ_HYPRE" 34263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat A, MatType type, MatReuse reuse, Mat *B) 34363c07aadSStefano Zampini { 34463c07aadSStefano Zampini Mat_HYPRE *hB; 34563c07aadSStefano Zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 34663c07aadSStefano Zampini PetscErrorCode ierr; 34763c07aadSStefano Zampini 34863c07aadSStefano Zampini PetscFunctionBegin; 34963c07aadSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported MAT_INPLACE_MATRIX"); 35063c07aadSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 35163c07aadSStefano Zampini /* always destroy the old matrix and create a new memory; 35263c07aadSStefano Zampini hope this does not churn the memory too much. The problem 35363c07aadSStefano Zampini is I do not know if it is possible to put the matrix back to 35463c07aadSStefano Zampini its initial state so that we can directly copy the values 35563c07aadSStefano Zampini the second time through. */ 35663c07aadSStefano Zampini hB = (Mat_HYPRE*)((*B)->data); 35763c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixDestroy,(hB->ij)); 35863c07aadSStefano Zampini } else { 35963c07aadSStefano Zampini ierr = MatCreate(comm,B);CHKERRQ(ierr); 36063c07aadSStefano Zampini ierr = MatSetType(*B,MATHYPRE);CHKERRQ(ierr); 36163c07aadSStefano Zampini ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 36263c07aadSStefano Zampini hB = (Mat_HYPRE*)((*B)->data); 36363c07aadSStefano Zampini } 36463c07aadSStefano Zampini ierr = MatHYPRE_CreateFromMat(A,hB);CHKERRQ(ierr); 36563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixCopy(A,hB->ij);CHKERRQ(ierr); 3664ec6421dSstefano_zampini (*B)->preallocated = PETSC_TRUE; 36763c07aadSStefano Zampini ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36863c07aadSStefano Zampini ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36963c07aadSStefano Zampini PetscFunctionReturn(0); 37063c07aadSStefano Zampini } 37163c07aadSStefano Zampini 37263c07aadSStefano Zampini #undef __FUNCT__ 37363c07aadSStefano Zampini #define __FUNCT__ "MatConvert_HYPRE_AIJ" 374ea9daf28SStefano Zampini static PetscErrorCode MatConvert_HYPRE_AIJ(Mat A, MatType mtype, MatReuse reuse, Mat *B) 37563c07aadSStefano Zampini { 37663c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 37763c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 37863c07aadSStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 37963c07aadSStefano Zampini MPI_Comm comm; 38063c07aadSStefano Zampini PetscScalar *da,*oa,*aptr; 38163c07aadSStefano Zampini PetscInt *dii,*djj,*oii,*ojj,*iptr; 38263c07aadSStefano Zampini PetscInt i,dnnz,onnz,m,n; 38358968eb6SStefano Zampini HYPRE_Int type; 38463c07aadSStefano Zampini PetscMPIInt size; 38563c07aadSStefano Zampini PetscErrorCode ierr; 38663c07aadSStefano Zampini 38763c07aadSStefano Zampini PetscFunctionBegin; 38863c07aadSStefano Zampini comm = PetscObjectComm((PetscObject)A); 38963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 39063c07aadSStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 39163c07aadSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 39263c07aadSStefano Zampini PetscBool ismpiaij,isseqaij; 39363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*B,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 39463c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*B,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 39563c07aadSStefano Zampini if (!ismpiaij && !isseqaij) SETERRQ(comm,PETSC_ERR_SUP,"Only MATMPIAIJ or MATSEQAIJ are supported"); 39663c07aadSStefano Zampini } 39763c07aadSStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 39863c07aadSStefano Zampini 39963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&parcsr)); 40063c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(parcsr); 40163c07aadSStefano Zampini hoffd = hypre_ParCSRMatrixOffd(parcsr); 40263c07aadSStefano Zampini m = hypre_CSRMatrixNumRows(hdiag); 40363c07aadSStefano Zampini n = hypre_CSRMatrixNumCols(hdiag); 40463c07aadSStefano Zampini dnnz = hypre_CSRMatrixNumNonzeros(hdiag); 40563c07aadSStefano Zampini onnz = hypre_CSRMatrixNumNonzeros(hoffd); 406225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 40763c07aadSStefano Zampini ierr = PetscMalloc1(m+1,&dii);CHKERRQ(ierr); 40863c07aadSStefano Zampini ierr = PetscMalloc1(dnnz,&djj);CHKERRQ(ierr); 40963c07aadSStefano Zampini ierr = PetscMalloc1(dnnz,&da);CHKERRQ(ierr); 410225daaf8SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 41163c07aadSStefano Zampini PetscInt nr; 41263c07aadSStefano Zampini PetscBool done; 41363c07aadSStefano Zampini if (size > 1) { 41463c07aadSStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)((*B)->data); 41563c07aadSStefano Zampini 41663c07aadSStefano Zampini ierr = MatGetRowIJ(b->A,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&dii,(const PetscInt**)&djj,&done);CHKERRQ(ierr); 41763c07aadSStefano Zampini if (nr != m) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows in diag part! %D != %D",nr,m); 41863c07aadSStefano Zampini if (dii[nr] < dnnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in diag part! reuse %D hypre %D",dii[nr],dnnz); 41963c07aadSStefano Zampini ierr = MatSeqAIJGetArray(b->A,&da);CHKERRQ(ierr); 42063c07aadSStefano Zampini } else { 42163c07aadSStefano Zampini ierr = MatGetRowIJ(*B,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&dii,(const PetscInt**)&djj,&done);CHKERRQ(ierr); 42263c07aadSStefano Zampini if (nr != m) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows! %D != %D",nr,m); 42363c07aadSStefano Zampini if (dii[nr] < dnnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros! reuse %D hypre %D",dii[nr],dnnz); 42463c07aadSStefano Zampini ierr = MatSeqAIJGetArray(*B,&da);CHKERRQ(ierr); 42563c07aadSStefano Zampini } 426225daaf8SStefano Zampini } else { /* MAT_INPLACE_MATRIX */ 4277d968826Sstefano_zampini dii = (PetscInt*)hypre_CSRMatrixI(hdiag); 4287d968826Sstefano_zampini djj = (PetscInt*)hypre_CSRMatrixJ(hdiag); 429225daaf8SStefano Zampini da = hypre_CSRMatrixData(hdiag); 43063c07aadSStefano Zampini } 43163c07aadSStefano Zampini ierr = PetscMemcpy(dii,hypre_CSRMatrixI(hdiag),(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 43263c07aadSStefano Zampini ierr = PetscMemcpy(djj,hypre_CSRMatrixJ(hdiag),dnnz*sizeof(PetscInt));CHKERRQ(ierr); 43363c07aadSStefano Zampini ierr = PetscMemcpy(da,hypre_CSRMatrixData(hdiag),dnnz*sizeof(PetscScalar));CHKERRQ(ierr); 43463c07aadSStefano Zampini iptr = djj; 43563c07aadSStefano Zampini aptr = da; 43663c07aadSStefano Zampini for (i=0; i<m; i++) { 43763c07aadSStefano Zampini PetscInt nc = dii[i+1]-dii[i]; 43863c07aadSStefano Zampini ierr = PetscSortIntWithScalarArray(nc,iptr,aptr);CHKERRQ(ierr); 43963c07aadSStefano Zampini iptr += nc; 44063c07aadSStefano Zampini aptr += nc; 44163c07aadSStefano Zampini } 44263c07aadSStefano Zampini if (size > 1) { 4437d968826Sstefano_zampini HYPRE_Int *offdj,*coffd; 44463c07aadSStefano Zampini 445225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 44663c07aadSStefano Zampini ierr = PetscMalloc1(m+1,&oii);CHKERRQ(ierr); 44763c07aadSStefano Zampini ierr = PetscMalloc1(onnz,&ojj);CHKERRQ(ierr); 44863c07aadSStefano Zampini ierr = PetscMalloc1(onnz,&oa);CHKERRQ(ierr); 449225daaf8SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 45063c07aadSStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)((*B)->data); 45163c07aadSStefano Zampini PetscInt nr,hr = hypre_CSRMatrixNumRows(hoffd); 45263c07aadSStefano Zampini PetscBool done; 45363c07aadSStefano Zampini 45463c07aadSStefano Zampini ierr = MatGetRowIJ(b->B,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&oii,(const PetscInt**)&ojj,&done);CHKERRQ(ierr); 45563c07aadSStefano Zampini if (nr != hr) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows in offdiag part! %D != %D",nr,hr); 45663c07aadSStefano Zampini if (oii[nr] < onnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in offdiag part! reuse %D hypre %D",oii[nr],onnz); 45763c07aadSStefano Zampini ierr = MatSeqAIJGetArray(b->B,&oa);CHKERRQ(ierr); 458225daaf8SStefano Zampini } else { /* MAT_INPLACE_MATRIX */ 4597d968826Sstefano_zampini oii = (PetscInt*)hypre_CSRMatrixI(hoffd); 4607d968826Sstefano_zampini ojj = (PetscInt*)hypre_CSRMatrixJ(hoffd); 461225daaf8SStefano Zampini oa = hypre_CSRMatrixData(hoffd); 46263c07aadSStefano Zampini } 46363c07aadSStefano Zampini ierr = PetscMemcpy(oii,hypre_CSRMatrixI(hoffd),(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 46463c07aadSStefano Zampini offdj = hypre_CSRMatrixJ(hoffd); 46563c07aadSStefano Zampini coffd = hypre_ParCSRMatrixColMapOffd(parcsr); 46663c07aadSStefano Zampini for (i=0; i<onnz; i++) ojj[i] = coffd[offdj[i]]; 46763c07aadSStefano Zampini ierr = PetscMemcpy(oa,hypre_CSRMatrixData(hoffd),onnz*sizeof(PetscScalar));CHKERRQ(ierr); 46863c07aadSStefano Zampini iptr = ojj; 46963c07aadSStefano Zampini aptr = oa; 47063c07aadSStefano Zampini for (i=0; i<m; i++) { 47163c07aadSStefano Zampini PetscInt nc = oii[i+1]-oii[i]; 47263c07aadSStefano Zampini ierr = PetscSortIntWithScalarArray(nc,iptr,aptr);CHKERRQ(ierr); 47363c07aadSStefano Zampini iptr += nc; 47463c07aadSStefano Zampini aptr += nc; 47563c07aadSStefano Zampini } 476225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 47763c07aadSStefano Zampini Mat_MPIAIJ *b; 47863c07aadSStefano Zampini Mat_SeqAIJ *d,*o; 479225daaf8SStefano Zampini 48041073d71Sstefano_zampini ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,PETSC_DECIDE,PETSC_DECIDE,dii,djj,da,oii,ojj,oa,B);CHKERRQ(ierr); 48163c07aadSStefano Zampini /* hack MPIAIJ */ 48263c07aadSStefano Zampini b = (Mat_MPIAIJ*)((*B)->data); 48363c07aadSStefano Zampini d = (Mat_SeqAIJ*)b->A->data; 48463c07aadSStefano Zampini o = (Mat_SeqAIJ*)b->B->data; 48563c07aadSStefano Zampini d->free_a = PETSC_TRUE; 48663c07aadSStefano Zampini d->free_ij = PETSC_TRUE; 48763c07aadSStefano Zampini o->free_a = PETSC_TRUE; 48863c07aadSStefano Zampini o->free_ij = PETSC_TRUE; 489225daaf8SStefano Zampini } else if (reuse == MAT_INPLACE_MATRIX) { 490225daaf8SStefano Zampini Mat T; 49141073d71Sstefano_zampini ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,PETSC_DECIDE,PETSC_DECIDE,dii,djj,da,oii,ojj,oa,&T);CHKERRQ(ierr); 492225daaf8SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 493225daaf8SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 494225daaf8SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 495225daaf8SStefano Zampini hypre_CSRMatrixI(hoffd) = NULL; 496225daaf8SStefano Zampini hypre_CSRMatrixJ(hoffd) = NULL; 497225daaf8SStefano Zampini hypre_CSRMatrixData(hoffd) = NULL; 498225daaf8SStefano Zampini ierr = MatHeaderReplace(A,&T);CHKERRQ(ierr); 49963c07aadSStefano Zampini } 500225daaf8SStefano Zampini } else { 501225daaf8SStefano Zampini oii = NULL; 502225daaf8SStefano Zampini ojj = NULL; 503225daaf8SStefano Zampini oa = NULL; 504225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 50563c07aadSStefano Zampini Mat_SeqAIJ* b; 50663c07aadSStefano Zampini ierr = MatCreateSeqAIJWithArrays(comm,m,n,dii,djj,da,B);CHKERRQ(ierr); 50763c07aadSStefano Zampini /* hack SeqAIJ */ 50863c07aadSStefano Zampini b = (Mat_SeqAIJ*)((*B)->data); 50963c07aadSStefano Zampini b->free_a = PETSC_TRUE; 51063c07aadSStefano Zampini b->free_ij = PETSC_TRUE; 511225daaf8SStefano Zampini } else if (reuse == MAT_INPLACE_MATRIX) { 512225daaf8SStefano Zampini Mat T; 513225daaf8SStefano Zampini ierr = MatCreateSeqAIJWithArrays(comm,m,n,dii,djj,da,&T);CHKERRQ(ierr); 514225daaf8SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 515225daaf8SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 516225daaf8SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 517225daaf8SStefano Zampini ierr = MatHeaderReplace(A,&T);CHKERRQ(ierr); 51863c07aadSStefano Zampini } 519225daaf8SStefano Zampini } 520225daaf8SStefano Zampini 521225daaf8SStefano Zampini /* we have to use hypre_Tfree to free the arrays */ 52263c07aadSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 523225daaf8SStefano Zampini void *ptrs[6] = {dii,djj,da,oii,ojj,oa}; 524225daaf8SStefano Zampini const char *names[6] = {"_hypre_csr_dii", 525225daaf8SStefano Zampini "_hypre_csr_djj", 526225daaf8SStefano Zampini "_hypre_csr_da", 527225daaf8SStefano Zampini "_hypre_csr_oii", 528225daaf8SStefano Zampini "_hypre_csr_ojj", 529225daaf8SStefano Zampini "_hypre_csr_oa"}; 530225daaf8SStefano Zampini for (i=0; i<6; i++) { 531225daaf8SStefano Zampini PetscContainer c; 532225daaf8SStefano Zampini 533225daaf8SStefano Zampini ierr = PetscContainerCreate(comm,&c);CHKERRQ(ierr); 534225daaf8SStefano Zampini ierr = PetscContainerSetPointer(c,ptrs[i]);CHKERRQ(ierr); 535225daaf8SStefano Zampini ierr = PetscContainerSetUserDestroy(c,hypre_array_destroy);CHKERRQ(ierr); 536225daaf8SStefano Zampini ierr = PetscObjectCompose((PetscObject)(*B),names[i],(PetscObject)c);CHKERRQ(ierr); 537225daaf8SStefano Zampini ierr = PetscContainerDestroy(&c);CHKERRQ(ierr); 538225daaf8SStefano Zampini } 53963c07aadSStefano Zampini } 54063c07aadSStefano Zampini PetscFunctionReturn(0); 54163c07aadSStefano Zampini } 54263c07aadSStefano Zampini 54363c07aadSStefano Zampini #undef __FUNCT__ 544613e5ff0Sstefano_zampini #define __FUNCT__ "MatAIJGetParCSR_Private" 545613e5ff0Sstefano_zampini static PetscErrorCode MatAIJGetParCSR_Private(Mat A, hypre_ParCSRMatrix **hA) 546c1a070e6SStefano Zampini { 547613e5ff0Sstefano_zampini hypre_ParCSRMatrix *tA; 548c1a070e6SStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 549c1a070e6SStefano Zampini Mat_SeqAIJ *diag,*offd; 550c1a070e6SStefano Zampini PetscInt *garray,noffd,dnnz,onnz,*row_starts,*col_starts; 551c1a070e6SStefano Zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 552613e5ff0Sstefano_zampini PetscBool ismpiaij,isseqaij; 553c1a070e6SStefano Zampini PetscErrorCode ierr; 554c1a070e6SStefano Zampini 555c1a070e6SStefano Zampini PetscFunctionBegin; 556c1a070e6SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 557c1a070e6SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 558c1a070e6SStefano Zampini if (!ismpiaij && !isseqaij) SETERRQ1(comm,PETSC_ERR_SUP,"Unsupported type %s",((PetscObject)A)->type); 559c1a070e6SStefano Zampini if (ismpiaij) { 560c1a070e6SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ*)(A->data); 561c1a070e6SStefano Zampini 562c1a070e6SStefano Zampini diag = (Mat_SeqAIJ*)a->A->data; 563c1a070e6SStefano Zampini offd = (Mat_SeqAIJ*)a->B->data; 564c1a070e6SStefano Zampini garray = a->garray; 565c1a070e6SStefano Zampini noffd = a->B->cmap->N; 566c1a070e6SStefano Zampini dnnz = diag->nz; 567c1a070e6SStefano Zampini onnz = offd->nz; 568c1a070e6SStefano Zampini } else { 569c1a070e6SStefano Zampini diag = (Mat_SeqAIJ*)A->data; 570c1a070e6SStefano Zampini offd = NULL; 571c1a070e6SStefano Zampini garray = NULL; 572c1a070e6SStefano Zampini noffd = 0; 573c1a070e6SStefano Zampini dnnz = diag->nz; 574c1a070e6SStefano Zampini onnz = 0; 575c1a070e6SStefano Zampini } 576225daaf8SStefano Zampini 577c1a070e6SStefano Zampini /* create a temporary ParCSR */ 578c1a070e6SStefano Zampini if (HYPRE_AssumedPartitionCheck()) { 579c1a070e6SStefano Zampini PetscMPIInt myid; 580c1a070e6SStefano Zampini 581c1a070e6SStefano Zampini ierr = MPI_Comm_rank(comm,&myid);CHKERRQ(ierr); 582c1a070e6SStefano Zampini row_starts = A->rmap->range + myid; 583c1a070e6SStefano Zampini col_starts = A->cmap->range + myid; 584c1a070e6SStefano Zampini } else { 585c1a070e6SStefano Zampini row_starts = A->rmap->range; 586c1a070e6SStefano Zampini col_starts = A->cmap->range; 587c1a070e6SStefano Zampini } 5887d968826Sstefano_zampini tA = hypre_ParCSRMatrixCreate(comm,A->rmap->N,A->cmap->N,(HYPRE_Int*)row_starts,(HYPRE_Int*)col_starts,noffd,dnnz,onnz); 589c1a070e6SStefano Zampini hypre_ParCSRMatrixSetRowStartsOwner(tA,0); 590c1a070e6SStefano Zampini hypre_ParCSRMatrixSetColStartsOwner(tA,0); 591c1a070e6SStefano Zampini 592225daaf8SStefano Zampini /* set diagonal part */ 593c1a070e6SStefano Zampini hdiag = hypre_ParCSRMatrixDiag(tA); 5947d968826Sstefano_zampini hypre_CSRMatrixI(hdiag) = (HYPRE_Int*)diag->i; 5957d968826Sstefano_zampini hypre_CSRMatrixJ(hdiag) = (HYPRE_Int*)diag->j; 596c1a070e6SStefano Zampini hypre_CSRMatrixData(hdiag) = diag->a; 597c1a070e6SStefano Zampini hypre_CSRMatrixNumNonzeros(hdiag) = diag->nz; 598c1a070e6SStefano Zampini hypre_CSRMatrixSetRownnz(hdiag); 599c1a070e6SStefano Zampini hypre_CSRMatrixSetDataOwner(hdiag,0); 600c1a070e6SStefano Zampini 601225daaf8SStefano Zampini /* set offdiagonal part */ 602c1a070e6SStefano Zampini hoffd = hypre_ParCSRMatrixOffd(tA); 603c1a070e6SStefano Zampini if (offd) { 6047d968826Sstefano_zampini hypre_CSRMatrixI(hoffd) = (HYPRE_Int*)offd->i; 6057d968826Sstefano_zampini hypre_CSRMatrixJ(hoffd) = (HYPRE_Int*)offd->j; 606c1a070e6SStefano Zampini hypre_CSRMatrixData(hoffd) = offd->a; 607c1a070e6SStefano Zampini hypre_CSRMatrixNumNonzeros(hoffd) = offd->nz; 608c1a070e6SStefano Zampini hypre_CSRMatrixSetRownnz(hoffd); 609c1a070e6SStefano Zampini hypre_CSRMatrixSetDataOwner(hoffd,0); 610c1a070e6SStefano Zampini hypre_ParCSRMatrixSetNumNonzeros(tA); 6117d968826Sstefano_zampini hypre_ParCSRMatrixColMapOffd(tA) = (HYPRE_Int*)garray; 612c1a070e6SStefano Zampini } 613613e5ff0Sstefano_zampini *hA = tA; 614613e5ff0Sstefano_zampini PetscFunctionReturn(0); 615613e5ff0Sstefano_zampini } 616c1a070e6SStefano Zampini 617613e5ff0Sstefano_zampini #undef __FUNCT__ 618613e5ff0Sstefano_zampini #define __FUNCT__ "MatAIJRestoreParCSR_Private" 619613e5ff0Sstefano_zampini static PetscErrorCode MatAIJRestoreParCSR_Private(Mat A, hypre_ParCSRMatrix **hA) 620613e5ff0Sstefano_zampini { 621613e5ff0Sstefano_zampini hypre_CSRMatrix *hdiag,*hoffd; 622c1a070e6SStefano Zampini 623613e5ff0Sstefano_zampini PetscFunctionBegin; 624613e5ff0Sstefano_zampini hdiag = hypre_ParCSRMatrixDiag(*hA); 625613e5ff0Sstefano_zampini hoffd = hypre_ParCSRMatrixOffd(*hA); 626c1a070e6SStefano Zampini /* set pointers to NULL before destroying tA */ 627c1a070e6SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 628c1a070e6SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 629c1a070e6SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 630c1a070e6SStefano Zampini hypre_CSRMatrixI(hoffd) = NULL; 631c1a070e6SStefano Zampini hypre_CSRMatrixJ(hoffd) = NULL; 632c1a070e6SStefano Zampini hypre_CSRMatrixData(hoffd) = NULL; 633613e5ff0Sstefano_zampini hypre_ParCSRMatrixColMapOffd(*hA) = NULL; 634613e5ff0Sstefano_zampini hypre_ParCSRMatrixDestroy(*hA); 635613e5ff0Sstefano_zampini *hA = NULL; 636613e5ff0Sstefano_zampini PetscFunctionReturn(0); 637613e5ff0Sstefano_zampini } 638613e5ff0Sstefano_zampini 639613e5ff0Sstefano_zampini /* calls RAP from BoomerAMG: 640613e5ff0Sstefano_zampini the resulting ParCSR will not own the column and row starts */ 641613e5ff0Sstefano_zampini #undef __FUNCT__ 642613e5ff0Sstefano_zampini #define __FUNCT__ "MatHYPRE_ParCSR_RAP" 643613e5ff0Sstefano_zampini static PetscErrorCode MatHYPRE_ParCSR_RAP(hypre_ParCSRMatrix *hR, hypre_ParCSRMatrix *hA, 644613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hP, hypre_ParCSRMatrix **hRAP) 645613e5ff0Sstefano_zampini { 646613e5ff0Sstefano_zampini PetscErrorCode ierr; 647613e5ff0Sstefano_zampini HYPRE_Int P_owns_col_starts,R_owns_row_starts; 648613e5ff0Sstefano_zampini 649613e5ff0Sstefano_zampini PetscFunctionBegin; 650613e5ff0Sstefano_zampini P_owns_col_starts = hypre_ParCSRMatrixOwnsColStarts(hP); 651613e5ff0Sstefano_zampini R_owns_row_starts = hypre_ParCSRMatrixOwnsRowStarts(hR); 652613e5ff0Sstefano_zampini PetscStackCallStandard(hypre_BoomerAMGBuildCoarseOperator,(hR,hA,hP,hRAP)); 653613e5ff0Sstefano_zampini PetscStackCallStandard(hypre_ParCSRMatrixSetNumNonzeros,(*hRAP)); 654613e5ff0Sstefano_zampini /* hypre_BoomerAMGBuildCoarseOperator steals the col_starts from P and the row_starts from R */ 655613e5ff0Sstefano_zampini hypre_ParCSRMatrixSetRowStartsOwner(*hRAP,0); 656613e5ff0Sstefano_zampini hypre_ParCSRMatrixSetColStartsOwner(*hRAP,0); 657613e5ff0Sstefano_zampini if (P_owns_col_starts) hypre_ParCSRMatrixSetColStartsOwner(hP,1); 658613e5ff0Sstefano_zampini if (R_owns_row_starts) hypre_ParCSRMatrixSetRowStartsOwner(hR,1); 659613e5ff0Sstefano_zampini PetscFunctionReturn(0); 660613e5ff0Sstefano_zampini } 661613e5ff0Sstefano_zampini 662613e5ff0Sstefano_zampini #undef __FUNCT__ 6636f231fbdSstefano_zampini #define __FUNCT__ "MatPtAPNumeric_AIJ_AIJ_wHYPRE" 6646f231fbdSstefano_zampini static PetscErrorCode MatPtAPNumeric_AIJ_AIJ_wHYPRE(Mat A,Mat P,Mat C) 665613e5ff0Sstefano_zampini { 6666f231fbdSstefano_zampini Mat B; 667613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hA,*hP,*hPtAP; 668613e5ff0Sstefano_zampini PetscErrorCode ierr; 669613e5ff0Sstefano_zampini 670613e5ff0Sstefano_zampini PetscFunctionBegin; 671613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(A,&hA);CHKERRQ(ierr); 672613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(P,&hP);CHKERRQ(ierr); 673613e5ff0Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(hP,hA,hP,&hPtAP);CHKERRQ(ierr); 6746f231fbdSstefano_zampini ierr = MatCreateFromParCSR(hPtAP,MATAIJ,PETSC_OWN_POINTER,&B);CHKERRQ(ierr); 6756f231fbdSstefano_zampini ierr = MatHeaderMerge(C,&B);CHKERRQ(ierr); 676613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(A,&hA);CHKERRQ(ierr); 677613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(P,&hP);CHKERRQ(ierr); 6786f231fbdSstefano_zampini PetscFunctionReturn(0); 6796f231fbdSstefano_zampini } 6806f231fbdSstefano_zampini 6816f231fbdSstefano_zampini #undef __FUNCT__ 6826f231fbdSstefano_zampini #define __FUNCT__ "MatPtAPSymbolic_AIJ_AIJ_wHYPRE" 6836f231fbdSstefano_zampini PETSC_INTERN PetscErrorCode MatPtAPSymbolic_AIJ_AIJ_wHYPRE(Mat A,Mat P,PetscReal fill,Mat *C) 6846f231fbdSstefano_zampini { 6856f231fbdSstefano_zampini PetscErrorCode ierr; 6866f231fbdSstefano_zampini PetscFunctionBegin; 6876f231fbdSstefano_zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),C);CHKERRQ(ierr); 6886f231fbdSstefano_zampini ierr = MatSetType(*C,MATAIJ);CHKERRQ(ierr); 6896f231fbdSstefano_zampini (*C)->ops->ptapnumeric = MatPtAPNumeric_AIJ_AIJ_wHYPRE; 690613e5ff0Sstefano_zampini PetscFunctionReturn(0); 691613e5ff0Sstefano_zampini } 692613e5ff0Sstefano_zampini 693613e5ff0Sstefano_zampini #undef __FUNCT__ 694*4cc28894Sstefano_zampini #define __FUNCT__ "MatPtAPNumeric_AIJ_HYPRE" 695*4cc28894Sstefano_zampini static PetscErrorCode MatPtAPNumeric_AIJ_HYPRE(Mat A,Mat P,Mat C) 696613e5ff0Sstefano_zampini { 697*4cc28894Sstefano_zampini Mat B; 698*4cc28894Sstefano_zampini Mat_HYPRE *hP; 699613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hA = NULL,*Pparcsr,*ptapparcsr; 700613e5ff0Sstefano_zampini HYPRE_Int type; 701613e5ff0Sstefano_zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 702*4cc28894Sstefano_zampini PetscBool ishypre; 703613e5ff0Sstefano_zampini PetscErrorCode ierr; 704613e5ff0Sstefano_zampini 705613e5ff0Sstefano_zampini PetscFunctionBegin; 706*4cc28894Sstefano_zampini ierr = PetscObjectTypeCompare((PetscObject)P,MATHYPRE,&ishypre);CHKERRQ(ierr); 707*4cc28894Sstefano_zampini if (!ishypre) SETERRQ1(comm,PETSC_ERR_USER,"P should be of type %s",MATHYPRE); 708*4cc28894Sstefano_zampini hP = (Mat_HYPRE*)P->data; 709613e5ff0Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hP->ij,&type)); 710613e5ff0Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 711613e5ff0Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hP->ij,(void**)&Pparcsr)); 712613e5ff0Sstefano_zampini 713613e5ff0Sstefano_zampini /* It looks like we don't need to have the diagonal entries 714613e5ff0Sstefano_zampini ordered first in the rows of the diagonal part 715613e5ff0Sstefano_zampini for boomerAMGBuildCoarseOperator to work */ 716613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(A,&hA);CHKERRQ(ierr); 717613e5ff0Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(Pparcsr,hA,Pparcsr,&ptapparcsr);CHKERRQ(ierr); 718613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(A,&hA);CHKERRQ(ierr); 719225daaf8SStefano Zampini 720*4cc28894Sstefano_zampini /* create temporary matrix and merge to C */ 721*4cc28894Sstefano_zampini ierr = MatCreateFromParCSR(ptapparcsr,((PetscObject)C)->type_name,PETSC_OWN_POINTER,&B);CHKERRQ(ierr); 722*4cc28894Sstefano_zampini ierr = MatHeaderMerge(C,&B);CHKERRQ(ierr); 723*4cc28894Sstefano_zampini PetscFunctionReturn(0); 724*4cc28894Sstefano_zampini } 725*4cc28894Sstefano_zampini 726*4cc28894Sstefano_zampini #undef __FUNCT__ 727*4cc28894Sstefano_zampini #define __FUNCT__ "MatPtAP_AIJ_HYPRE" 728*4cc28894Sstefano_zampini static PetscErrorCode MatPtAP_AIJ_HYPRE(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) 729*4cc28894Sstefano_zampini { 730*4cc28894Sstefano_zampini PetscErrorCode ierr; 731*4cc28894Sstefano_zampini 732*4cc28894Sstefano_zampini PetscFunctionBegin; 733*4cc28894Sstefano_zampini if (scall == MAT_INITIAL_MATRIX) { 734*4cc28894Sstefano_zampini const char *deft = MATAIJ; 735*4cc28894Sstefano_zampini char type[256]; 736*4cc28894Sstefano_zampini PetscBool flg; 737*4cc28894Sstefano_zampini 738*4cc28894Sstefano_zampini ierr = PetscObjectOptionsBegin((PetscObject)A);CHKERRQ(ierr); 739*4cc28894Sstefano_zampini ierr = PetscOptionsFList("-matptap_hypre_outtype","Matrix type",NULL,MatList,deft,type,256,&flg);CHKERRQ(ierr); 740*4cc28894Sstefano_zampini ierr = PetscOptionsEnd();CHKERRQ(ierr); 741*4cc28894Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); 742*4cc28894Sstefano_zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),C);CHKERRQ(ierr); 743*4cc28894Sstefano_zampini if (flg) { 744*4cc28894Sstefano_zampini ierr = MatSetType(*C,type);CHKERRQ(ierr); 745*4cc28894Sstefano_zampini } else { 746*4cc28894Sstefano_zampini ierr = MatSetType(*C,deft);CHKERRQ(ierr); 747*4cc28894Sstefano_zampini } 748*4cc28894Sstefano_zampini (*C)->ops->ptapnumeric = MatPtAPNumeric_AIJ_HYPRE; 749*4cc28894Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); 750*4cc28894Sstefano_zampini } 751*4cc28894Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 752*4cc28894Sstefano_zampini ierr = (*(*C)->ops->ptapnumeric)(A,P,*C);CHKERRQ(ierr); 753613e5ff0Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 754c1a070e6SStefano Zampini PetscFunctionReturn(0); 755c1a070e6SStefano Zampini } 756c1a070e6SStefano Zampini 757c1a070e6SStefano Zampini #undef __FUNCT__ 758*4cc28894Sstefano_zampini #define __FUNCT__ "MatPtAPNumeric_HYPRE_HYPRE" 759*4cc28894Sstefano_zampini static PetscErrorCode MatPtAPNumeric_HYPRE_HYPRE(Mat A,Mat P,Mat C) 760*4cc28894Sstefano_zampini { 761*4cc28894Sstefano_zampini Mat B; 762*4cc28894Sstefano_zampini hypre_ParCSRMatrix *Aparcsr,*Pparcsr,*ptapparcsr; 763*4cc28894Sstefano_zampini Mat_HYPRE *hA,*hP; 764*4cc28894Sstefano_zampini PetscBool ishypre; 765*4cc28894Sstefano_zampini HYPRE_Int type; 766*4cc28894Sstefano_zampini PetscErrorCode ierr; 767*4cc28894Sstefano_zampini 768*4cc28894Sstefano_zampini PetscFunctionBegin; 769*4cc28894Sstefano_zampini ierr = PetscObjectTypeCompare((PetscObject)P,MATHYPRE,&ishypre);CHKERRQ(ierr); 770*4cc28894Sstefano_zampini if (!ishypre) SETERRQ1(PetscObjectComm((PetscObject)P),PETSC_ERR_USER,"P should be of type %s",MATHYPRE); 771*4cc28894Sstefano_zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATHYPRE,&ishypre);CHKERRQ(ierr); 772*4cc28894Sstefano_zampini if (!ishypre) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_USER,"A should be of type %s",MATHYPRE); 773*4cc28894Sstefano_zampini hA = (Mat_HYPRE*)A->data; 774*4cc28894Sstefano_zampini hP = (Mat_HYPRE*)P->data; 775*4cc28894Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 776*4cc28894Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 777*4cc28894Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hP->ij,&type)); 778*4cc28894Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)P),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 779*4cc28894Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&Aparcsr)); 780*4cc28894Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hP->ij,(void**)&Pparcsr)); 781*4cc28894Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(Pparcsr,Aparcsr,Pparcsr,&ptapparcsr);CHKERRQ(ierr); 782*4cc28894Sstefano_zampini ierr = MatCreateFromParCSR(ptapparcsr,MATHYPRE,PETSC_OWN_POINTER,&B);CHKERRQ(ierr); 783*4cc28894Sstefano_zampini ierr = MatHeaderMerge(C,&B);CHKERRQ(ierr); 784*4cc28894Sstefano_zampini PetscFunctionReturn(0); 785*4cc28894Sstefano_zampini } 786*4cc28894Sstefano_zampini 787*4cc28894Sstefano_zampini #undef __FUNCT__ 788cd8bc7baSStefano Zampini #define __FUNCT__ "MatPtAP_HYPRE_HYPRE" 789cd8bc7baSStefano Zampini static PetscErrorCode MatPtAP_HYPRE_HYPRE(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) 790cd8bc7baSStefano Zampini { 791cd8bc7baSStefano Zampini PetscErrorCode ierr; 792cd8bc7baSStefano Zampini 793cd8bc7baSStefano Zampini PetscFunctionBegin; 794*4cc28894Sstefano_zampini if (scall == MAT_INITIAL_MATRIX) { 795*4cc28894Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); 796*4cc28894Sstefano_zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),C);CHKERRQ(ierr); 797*4cc28894Sstefano_zampini ierr = MatSetType(*C,MATHYPRE);CHKERRQ(ierr); 798*4cc28894Sstefano_zampini (*C)->ops->ptapnumeric = MatPtAPNumeric_HYPRE_HYPRE; 799*4cc28894Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPSymbolic,A,P,0,0);CHKERRQ(ierr); 800*4cc28894Sstefano_zampini } 801613e5ff0Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 802*4cc28894Sstefano_zampini ierr = (*(*C)->ops->ptapnumeric)(A,P,*C);CHKERRQ(ierr); 803613e5ff0Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 804cd8bc7baSStefano Zampini PetscFunctionReturn(0); 805cd8bc7baSStefano Zampini } 806cd8bc7baSStefano Zampini 807cd8bc7baSStefano Zampini #undef __FUNCT__ 80863c07aadSStefano Zampini #define __FUNCT__ "MatMultTranspose_HYPRE" 809ea9daf28SStefano Zampini static PetscErrorCode MatMultTranspose_HYPRE(Mat A, Vec x, Vec y) 81063c07aadSStefano Zampini { 81163c07aadSStefano Zampini PetscErrorCode ierr; 81263c07aadSStefano Zampini 81363c07aadSStefano Zampini PetscFunctionBegin; 81463c07aadSStefano Zampini ierr = MatHYPRE_MultKernel_Private(A,x,y,PETSC_TRUE);CHKERRQ(ierr); 81563c07aadSStefano Zampini PetscFunctionReturn(0); 81663c07aadSStefano Zampini } 81763c07aadSStefano Zampini 81863c07aadSStefano Zampini #undef __FUNCT__ 81963c07aadSStefano Zampini #define __FUNCT__ "MatMult_HYPRE" 820ea9daf28SStefano Zampini static PetscErrorCode MatMult_HYPRE(Mat A, Vec x, Vec y) 82163c07aadSStefano Zampini { 82263c07aadSStefano Zampini PetscErrorCode ierr; 82363c07aadSStefano Zampini 82463c07aadSStefano Zampini PetscFunctionBegin; 82563c07aadSStefano Zampini ierr = MatHYPRE_MultKernel_Private(A,x,y,PETSC_FALSE);CHKERRQ(ierr); 82663c07aadSStefano Zampini PetscFunctionReturn(0); 82763c07aadSStefano Zampini } 82863c07aadSStefano Zampini 82963c07aadSStefano Zampini #undef __FUNCT__ 83063c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_MultKernel_Private" 831ea9daf28SStefano Zampini static PetscErrorCode MatHYPRE_MultKernel_Private(Mat A, Vec x, Vec y, PetscBool trans) 83263c07aadSStefano Zampini { 83363c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 83463c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 83563c07aadSStefano Zampini hypre_ParVector *hx,*hy; 83663c07aadSStefano Zampini PetscScalar *ax,*ay,*sax,*say; 83763c07aadSStefano Zampini PetscErrorCode ierr; 83863c07aadSStefano Zampini 83963c07aadSStefano Zampini PetscFunctionBegin; 84063c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&parcsr)); 84163c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJVectorGetObject,(hA->x,(void**)&hx)); 84263c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJVectorGetObject,(hA->b,(void**)&hy)); 84363c07aadSStefano Zampini ierr = VecGetArrayRead(x,(const PetscScalar**)&ax);CHKERRQ(ierr); 84463c07aadSStefano Zampini ierr = VecGetArray(y,&ay);CHKERRQ(ierr); 84563c07aadSStefano Zampini if (trans) { 84658968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,ay,say); 84758968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,ax,sax); 84863c07aadSStefano Zampini hypre_ParCSRMatrixMatvecT(1.,parcsr,hy,0.,hx); 84958968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,say,ay); 85058968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,sax,ax); 85163c07aadSStefano Zampini } else { 85258968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,ax,sax); 85358968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,ay,say); 85463c07aadSStefano Zampini hypre_ParCSRMatrixMatvec(1.,parcsr,hx,0.,hy); 85558968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,sax,ax); 85658968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,say,ay); 85763c07aadSStefano Zampini } 85863c07aadSStefano Zampini ierr = VecRestoreArrayRead(x,(const PetscScalar**)&ax);CHKERRQ(ierr); 85963c07aadSStefano Zampini ierr = VecRestoreArray(y,&ay);CHKERRQ(ierr); 86063c07aadSStefano Zampini PetscFunctionReturn(0); 86163c07aadSStefano Zampini } 86263c07aadSStefano Zampini 86363c07aadSStefano Zampini #undef __FUNCT__ 86463c07aadSStefano Zampini #define __FUNCT__ "MatDestroy_HYPRE" 865ea9daf28SStefano Zampini static PetscErrorCode MatDestroy_HYPRE(Mat A) 86663c07aadSStefano Zampini { 86763c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 86863c07aadSStefano Zampini PetscErrorCode ierr; 86963c07aadSStefano Zampini 87063c07aadSStefano Zampini PetscFunctionBegin; 87163c07aadSStefano Zampini if (hA->x) PetscStackCallStandard(HYPRE_IJVectorDestroy,(hA->x)); 87263c07aadSStefano Zampini if (hA->b) PetscStackCallStandard(HYPRE_IJVectorDestroy,(hA->b)); 873978814f1SStefano Zampini if (hA->ij) { 874978814f1SStefano Zampini if (!hA->inner_free) hypre_IJMatrixObject(hA->ij) = NULL; 875978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixDestroy,(hA->ij)); 876978814f1SStefano Zampini } 87763c07aadSStefano Zampini if (hA->comm) { ierr = MPI_Comm_free(&hA->comm);CHKERRQ(ierr); } 87863c07aadSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_hypre_aij_C",NULL);CHKERRQ(ierr); 8792df22349SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_hypre_is_C",NULL);CHKERRQ(ierr); 880c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_seqaij_hypre_C",NULL);CHKERRQ(ierr); 881c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_mpiaij_hypre_C",NULL);CHKERRQ(ierr); 882d975228cSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatHYPRESetPreallocation_C",NULL);CHKERRQ(ierr); 883dd9c0a25Sstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatHYPREGetParCSR_C",NULL);CHKERRQ(ierr); 88463c07aadSStefano Zampini ierr = PetscFree(A->data);CHKERRQ(ierr); 88563c07aadSStefano Zampini PetscFunctionReturn(0); 88663c07aadSStefano Zampini } 88763c07aadSStefano Zampini 88863c07aadSStefano Zampini #undef __FUNCT__ 88963c07aadSStefano Zampini #define __FUNCT__ "MatSetUp_HYPRE" 890ea9daf28SStefano Zampini static PetscErrorCode MatSetUp_HYPRE(Mat A) 89163c07aadSStefano Zampini { 8924ec6421dSstefano_zampini PetscErrorCode ierr; 8934ec6421dSstefano_zampini 8944ec6421dSstefano_zampini PetscFunctionBegin; 8954ec6421dSstefano_zampini ierr = MatHYPRESetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 8964ec6421dSstefano_zampini PetscFunctionReturn(0); 8974ec6421dSstefano_zampini } 8984ec6421dSstefano_zampini 8994ec6421dSstefano_zampini #undef __FUNCT__ 9004ec6421dSstefano_zampini #define __FUNCT__ "MatAssemblyEnd_HYPRE" 9014ec6421dSstefano_zampini static PetscErrorCode MatAssemblyEnd_HYPRE(Mat A, MatAssemblyType mode) 9024ec6421dSstefano_zampini { 90363c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 90463c07aadSStefano Zampini Vec x,b; 90563c07aadSStefano Zampini PetscErrorCode ierr; 90663c07aadSStefano Zampini 90763c07aadSStefano Zampini PetscFunctionBegin; 9084ec6421dSstefano_zampini if (mode == MAT_FLUSH_ASSEMBLY) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"MAT_FLUSH_ASSEMBLY currently not supported with MATHYPRE"); 9094ec6421dSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixAssemble,(hA->ij)); 91063c07aadSStefano Zampini if (hA->x) PetscFunctionReturn(0); 91163c07aadSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 91263c07aadSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 91363c07aadSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),1,A->cmap->n,A->cmap->N,NULL,&x);CHKERRQ(ierr); 91463c07aadSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),1,A->rmap->n,A->rmap->N,NULL,&b);CHKERRQ(ierr); 91563c07aadSStefano Zampini ierr = VecHYPRE_IJVectorCreate(x,&hA->x);CHKERRQ(ierr); 91663c07aadSStefano Zampini ierr = VecHYPRE_IJVectorCreate(b,&hA->b);CHKERRQ(ierr); 91763c07aadSStefano Zampini ierr = VecDestroy(&x);CHKERRQ(ierr); 91863c07aadSStefano Zampini ierr = VecDestroy(&b);CHKERRQ(ierr); 91963c07aadSStefano Zampini PetscFunctionReturn(0); 92063c07aadSStefano Zampini } 92163c07aadSStefano Zampini 922d975228cSstefano_zampini #define MATHYPRE_SCRATCH 2048 923d975228cSstefano_zampini 924d975228cSstefano_zampini #undef __FUNCT__ 925d975228cSstefano_zampini #define __FUNCT__ "MatSetValues_HYPRE" 926d975228cSstefano_zampini PetscErrorCode MatSetValues_HYPRE(Mat A, PetscInt nr, const PetscInt rows[], PetscInt nc, const PetscInt cols[], const PetscScalar v[], InsertMode ins) 927d975228cSstefano_zampini { 928d975228cSstefano_zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 929d975228cSstefano_zampini PetscScalar *vals = (PetscScalar *)v; 930d975228cSstefano_zampini PetscScalar sscr[MATHYPRE_SCRATCH]; 9317d968826Sstefano_zampini HYPRE_Int cscr[2][MATHYPRE_SCRATCH]; 9327d968826Sstefano_zampini HYPRE_Int i,nzc; 933d975228cSstefano_zampini PetscErrorCode ierr; 934d975228cSstefano_zampini 935d975228cSstefano_zampini PetscFunctionBegin; 936d975228cSstefano_zampini for (i=0,nzc=0;i<nc;i++) { 937d975228cSstefano_zampini if (cols[i] >= 0) { 938d975228cSstefano_zampini cscr[0][nzc ] = cols[i]; 939d975228cSstefano_zampini cscr[1][nzc++] = i; 940d975228cSstefano_zampini } 941d975228cSstefano_zampini } 942d975228cSstefano_zampini if (!nzc) PetscFunctionReturn(0); 943d975228cSstefano_zampini 944d975228cSstefano_zampini if (ins == ADD_VALUES) { 945d975228cSstefano_zampini for (i=0;i<nr;i++) { 946d975228cSstefano_zampini if (rows[i] >= 0) { 947d975228cSstefano_zampini PetscInt j; 948d975228cSstefano_zampini for (j=0;j<nzc;j++) sscr[j] = vals[cscr[1][j]]; 9497d968826Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixAddToValues,(hA->ij,1,&nzc,(HYPRE_Int*)(rows+i),cscr[0],sscr)); 950d975228cSstefano_zampini } 951d975228cSstefano_zampini vals += nc; 952d975228cSstefano_zampini } 953d975228cSstefano_zampini } else { /* INSERT_VALUES */ 954d975228cSstefano_zampini #if defined(PETSC_USE_DEBUG) 955d975228cSstefano_zampini /* Insert values cannot be used to insert offproc entries */ 956d975228cSstefano_zampini PetscInt rst,ren; 957d975228cSstefano_zampini ierr = MatGetOwnershipRange(A,&rst,&ren);CHKERRQ(ierr); 958d975228cSstefano_zampini for (i=0;i<nr;i++) 959d975228cSstefano_zampini if (rows[i] >= 0 && (rows[i] < rst || rows[i] >= ren)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot use INSERT_VALUES for off-proc entries with MatHYPRE. Use ADD_VALUES instead"); 960d975228cSstefano_zampini #endif 961d975228cSstefano_zampini for (i=0;i<nr;i++) { 962d975228cSstefano_zampini if (rows[i] >= 0) { 963d975228cSstefano_zampini PetscInt j; 964d975228cSstefano_zampini for (j=0;j<nzc;j++) sscr[j] = vals[cscr[1][j]]; 9657d968826Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetValues,(hA->ij,1,&nzc,(HYPRE_Int*)(rows+i),cscr[0],sscr)); 966d975228cSstefano_zampini } 967d975228cSstefano_zampini vals += nc; 968d975228cSstefano_zampini } 969d975228cSstefano_zampini } 970d975228cSstefano_zampini PetscFunctionReturn(0); 971d975228cSstefano_zampini } 972d975228cSstefano_zampini 973d975228cSstefano_zampini #undef __FUNCT__ 974d975228cSstefano_zampini #define __FUNCT__ "MatHYPRESetPreallocation_HYPRE" 975d975228cSstefano_zampini static PetscErrorCode MatHYPRESetPreallocation_HYPRE(Mat A, PetscInt dnz, const PetscInt dnnz[], PetscInt onz, const PetscInt onnz[]) 976d975228cSstefano_zampini { 977d975228cSstefano_zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 9787d968826Sstefano_zampini HYPRE_Int *hdnnz,*honnz; 97906a29025Sstefano_zampini PetscInt i,rs,re,cs,ce,bs; 980d975228cSstefano_zampini PetscMPIInt size; 981d975228cSstefano_zampini PetscErrorCode ierr; 982d975228cSstefano_zampini 983d975228cSstefano_zampini PetscFunctionBegin; 98406a29025Sstefano_zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 985d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 986d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 987d975228cSstefano_zampini rs = A->rmap->rstart; 988d975228cSstefano_zampini re = A->rmap->rend; 989d975228cSstefano_zampini cs = A->cmap->rstart; 990d975228cSstefano_zampini ce = A->cmap->rend; 991d975228cSstefano_zampini if (!hA->ij) { 992d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rs,re-1,cs,ce-1,&hA->ij)); 993d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 994d975228cSstefano_zampini } else { 9957d968826Sstefano_zampini HYPRE_Int hrs,hre,hcs,hce; 996d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetLocalRange,(hA->ij,&hrs,&hre,&hcs,&hce)); 997d975228cSstefano_zampini if (hre-hrs+1 != re -rs) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent local rows: IJMatrix [%D,%D), PETSc [%D,%d)",hrs,hre+1,rs,re); 998d975228cSstefano_zampini if (hce-hcs+1 != ce -cs) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent local cols: IJMatrix [%D,%D), PETSc [%D,%d)",hcs,hce+1,cs,ce); 999d975228cSstefano_zampini } 1000d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(hA->ij)); 1001d975228cSstefano_zampini 100206a29025Sstefano_zampini if (dnz == PETSC_DEFAULT || dnz == PETSC_DECIDE) dnz = 10*bs; 100306a29025Sstefano_zampini if (onz == PETSC_DEFAULT || onz == PETSC_DECIDE) onz = 10*bs; 100406a29025Sstefano_zampini 1005d975228cSstefano_zampini if (!dnnz) { 1006d975228cSstefano_zampini ierr = PetscMalloc1(A->rmap->n,&hdnnz);CHKERRQ(ierr); 1007d975228cSstefano_zampini for (i=0;i<A->rmap->n;i++) hdnnz[i] = dnz; 1008d975228cSstefano_zampini } else { 10097d968826Sstefano_zampini hdnnz = (HYPRE_Int*)dnnz; 1010d975228cSstefano_zampini } 1011d975228cSstefano_zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 1012d975228cSstefano_zampini if (size > 1) { 1013d975228cSstefano_zampini if (!onnz) { 1014d975228cSstefano_zampini ierr = PetscMalloc1(A->rmap->n,&honnz);CHKERRQ(ierr); 1015d975228cSstefano_zampini for (i=0;i<A->rmap->n;i++) honnz[i] = onz; 1016d975228cSstefano_zampini } else { 10177d968826Sstefano_zampini honnz = (HYPRE_Int*)onnz; 1018d975228cSstefano_zampini } 1019d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(hA->ij,hdnnz,honnz)); 1020d975228cSstefano_zampini } else { 1021d975228cSstefano_zampini honnz = NULL; 1022d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetRowSizes,(hA->ij,hdnnz)); 1023d975228cSstefano_zampini } 1024d975228cSstefano_zampini if (!dnnz) { 1025d975228cSstefano_zampini ierr = PetscFree(hdnnz);CHKERRQ(ierr); 1026d975228cSstefano_zampini } 1027d975228cSstefano_zampini if (!onnz && honnz) { 1028d975228cSstefano_zampini ierr = PetscFree(honnz);CHKERRQ(ierr); 1029d975228cSstefano_zampini } 103006a29025Sstefano_zampini A->preallocated = PETSC_TRUE; 1031d975228cSstefano_zampini 1032d975228cSstefano_zampini /* SetDiagOffdSizes sets hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0 */ 1033d975228cSstefano_zampini { 1034d975228cSstefano_zampini hypre_AuxParCSRMatrix *aux_matrix; 1035d975228cSstefano_zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(hA->ij); 1036d975228cSstefano_zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 1; 1037d975228cSstefano_zampini } 1038d975228cSstefano_zampini PetscFunctionReturn(0); 1039d975228cSstefano_zampini } 1040d975228cSstefano_zampini 1041d975228cSstefano_zampini /*@C 1042d975228cSstefano_zampini MatHYPRESetPreallocation - Preallocates memory for a sparse parallel matrix in HYPRE IJ format 1043d975228cSstefano_zampini 1044d975228cSstefano_zampini Collective on Mat 1045d975228cSstefano_zampini 1046d975228cSstefano_zampini Input Parameters: 1047d975228cSstefano_zampini + A - the matrix 1048d975228cSstefano_zampini . dnz - number of nonzeros per row in DIAGONAL portion of local submatrix 1049d975228cSstefano_zampini (same value is used for all local rows) 1050d975228cSstefano_zampini . dnnz - array containing the number of nonzeros in the various rows of the 1051d975228cSstefano_zampini DIAGONAL portion of the local submatrix (possibly different for each row) 1052d975228cSstefano_zampini or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 1053d975228cSstefano_zampini The size of this array is equal to the number of local rows, i.e 'm'. 1054d975228cSstefano_zampini For matrices that will be factored, you must leave room for (and set) 1055d975228cSstefano_zampini the diagonal entry even if it is zero. 1056d975228cSstefano_zampini . onz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1057d975228cSstefano_zampini submatrix (same value is used for all local rows). 1058d975228cSstefano_zampini - onnz - array containing the number of nonzeros in the various rows of the 1059d975228cSstefano_zampini OFF-DIAGONAL portion of the local submatrix (possibly different for 1060d975228cSstefano_zampini each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 1061d975228cSstefano_zampini structure. The size of this array is equal to the number 1062d975228cSstefano_zampini of local rows, i.e 'm'. 1063d975228cSstefano_zampini 1064d975228cSstefano_zampini Notes: If the *nnz parameter is given then the *nz parameter is ignored; for sequential matrices, onz and onnz are ignored. 1065d975228cSstefano_zampini 1066d975228cSstefano_zampini Level: intermediate 1067d975228cSstefano_zampini 1068d975228cSstefano_zampini .keywords: matrix, aij, compressed row, sparse, parallel 1069d975228cSstefano_zampini 1070d975228cSstefano_zampini .seealso: MatCreate(), MatMPIAIJSetPreallocation, MATHYPRE 1071d975228cSstefano_zampini @*/ 1072d975228cSstefano_zampini #undef __FUNCT__ 1073d975228cSstefano_zampini #define __FUNCT__ "MatHYPRESetPreallocation" 1074d975228cSstefano_zampini PetscErrorCode MatHYPRESetPreallocation(Mat A, PetscInt dnz, const PetscInt dnnz[], PetscInt onz, const PetscInt onnz[]) 1075d975228cSstefano_zampini { 1076d975228cSstefano_zampini PetscErrorCode ierr; 1077d975228cSstefano_zampini 1078d975228cSstefano_zampini PetscFunctionBegin; 1079d975228cSstefano_zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1080d975228cSstefano_zampini PetscValidType(A,1); 1081d975228cSstefano_zampini ierr = PetscTryMethod(A,"MatHYPRESetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(A,dnz,dnnz,onz,onnz));CHKERRQ(ierr); 1082d975228cSstefano_zampini PetscFunctionReturn(0); 1083d975228cSstefano_zampini } 1084d975228cSstefano_zampini 1085225daaf8SStefano Zampini /* 1086225daaf8SStefano Zampini MatCreateFromParCSR - Creates a matrix from a hypre_ParCSRMatrix 1087225daaf8SStefano Zampini 1088225daaf8SStefano Zampini Collective 1089225daaf8SStefano Zampini 1090225daaf8SStefano Zampini Input Parameters: 1091225daaf8SStefano Zampini + vparcsr - the pointer to the hypre_ParCSRMatrix 1092bb4689ddSStefano Zampini . mtype - matrix type to be created. Currently MATAIJ, MATIS and MATHYPRE are supported. 1093225daaf8SStefano Zampini - copymode - PETSc copying options 1094225daaf8SStefano Zampini 1095225daaf8SStefano Zampini Output Parameter: 1096225daaf8SStefano Zampini . A - the matrix 1097225daaf8SStefano Zampini 1098225daaf8SStefano Zampini Level: intermediate 1099225daaf8SStefano Zampini 1100225daaf8SStefano Zampini .seealso: MatHYPRE, PetscCopyMode 1101225daaf8SStefano Zampini */ 1102978814f1SStefano Zampini #undef __FUNCT__ 1103225daaf8SStefano Zampini #define __FUNCT__ "MatCreateFromParCSR" 1104dd9c0a25Sstefano_zampini PETSC_EXTERN PetscErrorCode MatCreateFromParCSR(hypre_ParCSRMatrix *vparcsr, MatType mtype, PetscCopyMode copymode, Mat* A) 1105978814f1SStefano Zampini { 1106225daaf8SStefano Zampini Mat T; 1107978814f1SStefano Zampini Mat_HYPRE *hA; 110863c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 1109978814f1SStefano Zampini MPI_Comm comm; 1110978814f1SStefano Zampini PetscInt rstart,rend,cstart,cend,M,N; 1111bb4689ddSStefano Zampini PetscBool isseqaij,ismpiaij,isaij,ishyp,isis; 1112978814f1SStefano Zampini PetscErrorCode ierr; 1113978814f1SStefano Zampini 1114978814f1SStefano Zampini PetscFunctionBegin; 1115978814f1SStefano Zampini parcsr = (hypre_ParCSRMatrix *)vparcsr; 1116978814f1SStefano Zampini comm = hypre_ParCSRMatrixComm(parcsr); 1117225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 1118225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 1119225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATAIJ,&isaij);CHKERRQ(ierr); 1120225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATHYPRE,&ishyp);CHKERRQ(ierr); 11218cfe8d00SStefano Zampini ierr = PetscStrcmp(mtype,MATIS,&isis);CHKERRQ(ierr); 1122225daaf8SStefano Zampini isaij = (PetscBool)(isseqaij || ismpiaij || isaij); 1123bb4689ddSStefano Zampini if (!isaij && !ishyp && !isis) SETERRQ6(comm,PETSC_ERR_SUP,"Unsupported MatType %s! Supported types are %s, %s, %s, %s, and %s",mtype,MATAIJ,MATSEQAIJ,MATMPIAIJ,MATIS,MATHYPRE); 1124225daaf8SStefano Zampini if (ishyp && copymode == PETSC_COPY_VALUES) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported copymode PETSC_COPY_VALUES"); 1125978814f1SStefano Zampini 1126978814f1SStefano Zampini /* access ParCSRMatrix */ 1127978814f1SStefano Zampini rstart = hypre_ParCSRMatrixFirstRowIndex(parcsr); 1128978814f1SStefano Zampini rend = hypre_ParCSRMatrixLastRowIndex(parcsr); 1129978814f1SStefano Zampini cstart = hypre_ParCSRMatrixFirstColDiag(parcsr); 1130978814f1SStefano Zampini cend = hypre_ParCSRMatrixLastColDiag(parcsr); 1131978814f1SStefano Zampini M = hypre_ParCSRMatrixGlobalNumRows(parcsr); 1132978814f1SStefano Zampini N = hypre_ParCSRMatrixGlobalNumCols(parcsr); 1133978814f1SStefano Zampini 1134fa92c42cSstefano_zampini /* fix for empty local rows/columns */ 1135fa92c42cSstefano_zampini if (rend < rstart) rend = rstart; 1136fa92c42cSstefano_zampini if (cend < cstart) cend = cstart; 1137fa92c42cSstefano_zampini 1138978814f1SStefano Zampini /* create PETSc matrix with MatHYPRE */ 1139225daaf8SStefano Zampini ierr = MatCreate(comm,&T);CHKERRQ(ierr); 1140225daaf8SStefano Zampini ierr = MatSetSizes(T,rend-rstart+1,cend-cstart+1,M,N);CHKERRQ(ierr); 1141225daaf8SStefano Zampini ierr = MatSetType(T,MATHYPRE);CHKERRQ(ierr); 1142225daaf8SStefano Zampini hA = (Mat_HYPRE*)(T->data); 1143978814f1SStefano Zampini 1144978814f1SStefano Zampini /* create HYPRE_IJMatrix */ 1145978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rstart,rend-1,cstart,cend-1,&hA->ij)); 1146978814f1SStefano Zampini 1147978814f1SStefano Zampini /* set ParCSR object */ 1148978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 1149978814f1SStefano Zampini hypre_IJMatrixObject(hA->ij) = parcsr; 11504ec6421dSstefano_zampini T->preallocated = PETSC_TRUE; 1151978814f1SStefano Zampini 1152978814f1SStefano Zampini /* set assembled flag */ 1153978814f1SStefano Zampini hypre_IJMatrixAssembleFlag(hA->ij) = 1; 1154978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(hA->ij)); 1155225daaf8SStefano Zampini if (ishyp) { 11566d2a658fSstefano_zampini PetscMPIInt myid = 0; 11576d2a658fSstefano_zampini 11586d2a658fSstefano_zampini /* make sure we always have row_starts and col_starts available */ 11596d2a658fSstefano_zampini if (HYPRE_AssumedPartitionCheck()) { 11606d2a658fSstefano_zampini ierr = MPI_Comm_rank(comm,&myid);CHKERRQ(ierr); 11616d2a658fSstefano_zampini } 11626d2a658fSstefano_zampini if (!hypre_ParCSRMatrixOwnsColStarts(parcsr)) { 11636d2a658fSstefano_zampini PetscLayout map; 11646d2a658fSstefano_zampini 11656d2a658fSstefano_zampini ierr = MatGetLayouts(T,NULL,&map);CHKERRQ(ierr); 11666d2a658fSstefano_zampini ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 11676d2a658fSstefano_zampini hypre_ParCSRMatrixColStarts(parcsr) = map->range + myid; 11686d2a658fSstefano_zampini } 11696d2a658fSstefano_zampini if (!hypre_ParCSRMatrixOwnsRowStarts(parcsr)) { 11706d2a658fSstefano_zampini PetscLayout map; 11716d2a658fSstefano_zampini 11726d2a658fSstefano_zampini ierr = MatGetLayouts(T,&map,NULL);CHKERRQ(ierr); 11736d2a658fSstefano_zampini ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 11746d2a658fSstefano_zampini hypre_ParCSRMatrixRowStarts(parcsr) = map->range + myid; 11756d2a658fSstefano_zampini } 1176978814f1SStefano Zampini /* prevent from freeing the pointer */ 1177978814f1SStefano Zampini if (copymode == PETSC_USE_POINTER) hA->inner_free = PETSC_FALSE; 1178225daaf8SStefano Zampini *A = T; 1179978814f1SStefano Zampini ierr = MatAssemblyBegin(*A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1180978814f1SStefano Zampini ierr = MatAssemblyEnd(*A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1181bb4689ddSStefano Zampini } else if (isaij) { 1182bb4689ddSStefano Zampini if (copymode != PETSC_OWN_POINTER) { 1183225daaf8SStefano Zampini /* prevent from freeing the pointer */ 1184225daaf8SStefano Zampini hA->inner_free = PETSC_FALSE; 1185225daaf8SStefano Zampini ierr = MatConvert_HYPRE_AIJ(T,MATAIJ,MAT_INITIAL_MATRIX,A);CHKERRQ(ierr); 1186225daaf8SStefano Zampini ierr = MatDestroy(&T);CHKERRQ(ierr); 1187225daaf8SStefano Zampini } else { /* AIJ return type with PETSC_OWN_POINTER */ 1188225daaf8SStefano Zampini ierr = MatConvert_HYPRE_AIJ(T,MATAIJ,MAT_INPLACE_MATRIX,&T);CHKERRQ(ierr); 1189225daaf8SStefano Zampini *A = T; 1190225daaf8SStefano Zampini } 1191bb4689ddSStefano Zampini } else if (isis) { 11928cfe8d00SStefano Zampini ierr = MatConvert_HYPRE_IS(T,MATIS,MAT_INITIAL_MATRIX,A);CHKERRQ(ierr); 11938cfe8d00SStefano Zampini if (copymode != PETSC_OWN_POINTER) hA->inner_free = PETSC_FALSE; 1194bb4689ddSStefano Zampini ierr = MatDestroy(&T);CHKERRQ(ierr); 1195bb4689ddSStefano Zampini } 1196978814f1SStefano Zampini PetscFunctionReturn(0); 1197978814f1SStefano Zampini } 1198978814f1SStefano Zampini 119963c07aadSStefano Zampini #undef __FUNCT__ 1200dd9c0a25Sstefano_zampini #define __FUNCT__ "MatHYPREGetParCSR_HYPRE" 1201dd9c0a25Sstefano_zampini PetscErrorCode MatHYPREGetParCSR_HYPRE(Mat A, hypre_ParCSRMatrix **parcsr) 1202dd9c0a25Sstefano_zampini { 1203dd9c0a25Sstefano_zampini Mat_HYPRE* hA = (Mat_HYPRE*)A->data; 1204dd9c0a25Sstefano_zampini HYPRE_Int type; 1205dd9c0a25Sstefano_zampini PetscErrorCode ierr; 1206dd9c0a25Sstefano_zampini 1207dd9c0a25Sstefano_zampini PetscFunctionBegin; 1208dd9c0a25Sstefano_zampini if (!hA->ij) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"HYPRE_IJMatrix not present"); 1209dd9c0a25Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 1210dd9c0a25Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"HYPRE_IJMatrix is not of type HYPRE_PARCSR"); 1211dd9c0a25Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)parcsr)); 1212dd9c0a25Sstefano_zampini PetscFunctionReturn(0); 1213dd9c0a25Sstefano_zampini } 1214dd9c0a25Sstefano_zampini 1215dd9c0a25Sstefano_zampini /* 1216dd9c0a25Sstefano_zampini MatHYPREGetParCSR - Gets the pointer to the ParCSR matrix 1217dd9c0a25Sstefano_zampini 1218dd9c0a25Sstefano_zampini Not collective 1219dd9c0a25Sstefano_zampini 1220dd9c0a25Sstefano_zampini Input Parameters: 1221dd9c0a25Sstefano_zampini + A - the MATHYPRE object 1222dd9c0a25Sstefano_zampini 1223dd9c0a25Sstefano_zampini Output Parameter: 1224dd9c0a25Sstefano_zampini . parcsr - the pointer to the hypre_ParCSRMatrix 1225dd9c0a25Sstefano_zampini 1226dd9c0a25Sstefano_zampini Level: intermediate 1227dd9c0a25Sstefano_zampini 1228dd9c0a25Sstefano_zampini .seealso: MatHYPRE, PetscCopyMode 1229dd9c0a25Sstefano_zampini */ 1230dd9c0a25Sstefano_zampini #undef __FUNCT__ 1231dd9c0a25Sstefano_zampini #define __FUNCT__ "MatHYPREGetParCSR" 1232dd9c0a25Sstefano_zampini PetscErrorCode MatHYPREGetParCSR(Mat A, hypre_ParCSRMatrix **parcsr) 1233dd9c0a25Sstefano_zampini { 1234dd9c0a25Sstefano_zampini PetscErrorCode ierr; 1235dd9c0a25Sstefano_zampini 1236dd9c0a25Sstefano_zampini PetscFunctionBegin; 1237dd9c0a25Sstefano_zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1238dd9c0a25Sstefano_zampini PetscValidType(A,1); 1239dd9c0a25Sstefano_zampini ierr = PetscUseMethod(A,"MatHYPREGetParCSR_C",(Mat,hypre_ParCSRMatrix**),(A,parcsr));CHKERRQ(ierr); 1240dd9c0a25Sstefano_zampini PetscFunctionReturn(0); 1241dd9c0a25Sstefano_zampini } 1242dd9c0a25Sstefano_zampini 1243dd9c0a25Sstefano_zampini #undef __FUNCT__ 124463c07aadSStefano Zampini #define __FUNCT__ "MatCreate_HYPRE" 124563c07aadSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_HYPRE(Mat B) 124663c07aadSStefano Zampini { 124763c07aadSStefano Zampini Mat_HYPRE *hB; 124863c07aadSStefano Zampini PetscErrorCode ierr; 124963c07aadSStefano Zampini 125063c07aadSStefano Zampini PetscFunctionBegin; 125163c07aadSStefano Zampini ierr = PetscNewLog(B,&hB);CHKERRQ(ierr); 1252978814f1SStefano Zampini hB->inner_free = PETSC_TRUE; 1253978814f1SStefano Zampini 125463c07aadSStefano Zampini B->data = (void*)hB; 125563c07aadSStefano Zampini B->rmap->bs = 1; 125663c07aadSStefano Zampini B->assembled = PETSC_FALSE; 125763c07aadSStefano Zampini 125863c07aadSStefano Zampini B->ops->mult = MatMult_HYPRE; 125963c07aadSStefano Zampini B->ops->multtranspose = MatMultTranspose_HYPRE; 126063c07aadSStefano Zampini B->ops->setup = MatSetUp_HYPRE; 126163c07aadSStefano Zampini B->ops->destroy = MatDestroy_HYPRE; 126263c07aadSStefano Zampini B->ops->assemblyend = MatAssemblyEnd_HYPRE; 1263cd8bc7baSStefano Zampini B->ops->ptap = MatPtAP_HYPRE_HYPRE; 1264d975228cSstefano_zampini B->ops->setvalues = MatSetValues_HYPRE; 126563c07aadSStefano Zampini 126663c07aadSStefano Zampini ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)B),&hB->comm);CHKERRQ(ierr); 126763c07aadSStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATHYPRE);CHKERRQ(ierr); 126863c07aadSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_hypre_aij_C",MatConvert_HYPRE_AIJ);CHKERRQ(ierr); 12692df22349SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_hypre_is_C",MatConvert_HYPRE_IS);CHKERRQ(ierr); 1270c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaij_hypre_C",MatPtAP_AIJ_HYPRE);CHKERRQ(ierr); 1271c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_mpiaij_hypre_C",MatPtAP_AIJ_HYPRE);CHKERRQ(ierr); 1272d975228cSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatHYPRESetPreallocation_C",MatHYPRESetPreallocation_HYPRE);CHKERRQ(ierr); 1273dd9c0a25Sstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatHYPREGetParCSR_C",MatHYPREGetParCSR_HYPRE);CHKERRQ(ierr); 127463c07aadSStefano Zampini PetscFunctionReturn(0); 127563c07aadSStefano Zampini } 127663c07aadSStefano Zampini 1277225daaf8SStefano Zampini #undef __FUNCT__ 1278225daaf8SStefano Zampini #define __FUNCT__ "hypre_array_destroy" 1279225daaf8SStefano Zampini static PetscErrorCode hypre_array_destroy(void *ptr) 1280225daaf8SStefano Zampini { 1281225daaf8SStefano Zampini PetscFunctionBegin; 1282225daaf8SStefano Zampini hypre_TFree(ptr); 1283225daaf8SStefano Zampini PetscFunctionReturn(0); 1284225daaf8SStefano Zampini } 1285225daaf8SStefano Zampini 128663c07aadSStefano Zampini #if 0 128763c07aadSStefano Zampini /* 128863c07aadSStefano Zampini Does NOT copy the data over, instead uses DIRECTLY the pointers from the PETSc MPIAIJ format 128963c07aadSStefano Zampini 129063c07aadSStefano Zampini This is UNFINISHED and does NOT work! The problem is that hypre puts the diagonal entry first 129163c07aadSStefano Zampini which will corrupt the PETSc data structure if we did this. Need a work around to this problem. 129263c07aadSStefano Zampini */ 129363c07aadSStefano Zampini #include <_hypre_IJ_mv.h> 129463c07aadSStefano Zampini #include <HYPRE_IJ_mv.h> 129563c07aadSStefano Zampini 129663c07aadSStefano Zampini #undef __FUNCT__ 129763c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixLink" 129863c07aadSStefano Zampini PetscErrorCode MatHYPRE_IJMatrixLink(Mat A, HYPRE_IJMatrix *ij) 129963c07aadSStefano Zampini { 130063c07aadSStefano Zampini PetscErrorCode ierr; 130163c07aadSStefano Zampini PetscInt rstart,rend,cstart,cend; 130263c07aadSStefano Zampini PetscBool flg; 130363c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 130463c07aadSStefano Zampini 130563c07aadSStefano Zampini PetscFunctionBegin; 130663c07aadSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 130763c07aadSStefano Zampini PetscValidType(A,1); 130863c07aadSStefano Zampini PetscValidPointer(ij,2); 130963c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);CHKERRQ(ierr); 131063c07aadSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Can only use with PETSc MPIAIJ matrices"); 131163c07aadSStefano Zampini ierr = MatSetUp(A);CHKERRQ(ierr); 131263c07aadSStefano Zampini 131363c07aadSStefano Zampini ierr = PetscLogEventBegin(MAT_Convert,A,0,0,0);CHKERRQ(ierr); 131463c07aadSStefano Zampini rstart = A->rmap->rstart; 131563c07aadSStefano Zampini rend = A->rmap->rend; 131663c07aadSStefano Zampini cstart = A->cmap->rstart; 131763c07aadSStefano Zampini cend = A->cmap->rend; 131863c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(PetscObjectComm((PetscObject)A),rstart,rend-1,cstart,cend-1,ij)); 131963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(*ij,HYPRE_PARCSR)); 132063c07aadSStefano Zampini 132163c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(*ij)); 132263c07aadSStefano Zampini PetscStackCall("hypre_IJMatrixTranslator",aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(*ij)); 132363c07aadSStefano Zampini 132463c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 132563c07aadSStefano Zampini 132663c07aadSStefano Zampini /* this is the Hack part where we monkey directly with the hypre datastructures */ 132763c07aadSStefano Zampini 132863c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixAssemble,(*ij)); 132963c07aadSStefano Zampini ierr = PetscLogEventEnd(MAT_Convert,A,0,0,0);CHKERRQ(ierr); 133063c07aadSStefano Zampini PetscFunctionReturn(0); 133163c07aadSStefano Zampini } 133263c07aadSStefano Zampini #endif 1333