163c07aadSStefano Zampini 263c07aadSStefano Zampini /* 363c07aadSStefano Zampini Creates hypre ijmatrix from PETSc matrix 463c07aadSStefano Zampini */ 5225daaf8SStefano Zampini 6225daaf8SStefano Zampini /*MC 7225daaf8SStefano Zampini MATHYPRE - MATHYPRE = "hypre" - A matrix type to be used for sequential and parallel sparse matrices 8225daaf8SStefano Zampini based on the hypre IJ interface. 9225daaf8SStefano Zampini 10225daaf8SStefano Zampini Level: intermediate 11225daaf8SStefano Zampini 12225daaf8SStefano Zampini .seealso: MatCreate() 13225daaf8SStefano Zampini M*/ 14225daaf8SStefano Zampini 15dd9c0a25Sstefano_zampini #include <petscmathypre.h> 1663c07aadSStefano Zampini #include <petsc/private/matimpl.h> 1763c07aadSStefano Zampini #include <../src/mat/impls/hypre/mhypre.h> 1863c07aadSStefano Zampini #include <../src/mat/impls/aij/mpi/mpiaij.h> 1958968eb6SStefano Zampini #include <../src/vec/vec/impls/hypre/vhyp.h> 2058968eb6SStefano Zampini #include <HYPRE.h> 21c1a070e6SStefano Zampini #include <HYPRE_utilities.h> 22cd8bc7baSStefano Zampini #include <_hypre_parcsr_ls.h> 2363c07aadSStefano Zampini 2463c07aadSStefano Zampini static PetscErrorCode MatHYPRE_CreateFromMat(Mat,Mat_HYPRE*); 2563c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat,Mat,HYPRE_IJMatrix); 2663c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat,HYPRE_IJMatrix); 2763c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat,HYPRE_IJMatrix); 2863c07aadSStefano Zampini static PetscErrorCode MatHYPRE_MultKernel_Private(Mat,Vec,Vec,PetscBool); 29225daaf8SStefano Zampini static PetscErrorCode hypre_array_destroy(void*); 3063c07aadSStefano Zampini 3163c07aadSStefano Zampini #undef __FUNCT__ 3263c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixPreallocate" 3363c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMatrix ij) 3463c07aadSStefano Zampini { 3563c07aadSStefano Zampini PetscErrorCode ierr; 3663c07aadSStefano Zampini PetscInt i,n_d,n_o; 3763c07aadSStefano Zampini const PetscInt *ia_d,*ia_o; 3863c07aadSStefano Zampini PetscBool done_d=PETSC_FALSE,done_o=PETSC_FALSE; 3963c07aadSStefano Zampini PetscInt *nnz_d=NULL,*nnz_o=NULL; 4063c07aadSStefano Zampini 4163c07aadSStefano Zampini PetscFunctionBegin; 4263c07aadSStefano Zampini if (A_d) { /* determine number of nonzero entries in local diagonal part */ 4363c07aadSStefano Zampini ierr = MatGetRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,&n_d,&ia_d,NULL,&done_d);CHKERRQ(ierr); 4463c07aadSStefano Zampini if (done_d) { 4563c07aadSStefano Zampini ierr = PetscMalloc1(n_d,&nnz_d);CHKERRQ(ierr); 4663c07aadSStefano Zampini for (i=0; i<n_d; i++) { 4763c07aadSStefano Zampini nnz_d[i] = ia_d[i+1] - ia_d[i]; 4863c07aadSStefano Zampini } 4963c07aadSStefano Zampini } 5063c07aadSStefano Zampini ierr = MatRestoreRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,NULL,&ia_d,NULL,&done_d);CHKERRQ(ierr); 5163c07aadSStefano Zampini } 5263c07aadSStefano Zampini if (A_o) { /* determine number of nonzero entries in local off-diagonal part */ 5363c07aadSStefano Zampini ierr = MatGetRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);CHKERRQ(ierr); 5463c07aadSStefano Zampini if (done_o) { 5563c07aadSStefano Zampini ierr = PetscMalloc1(n_o,&nnz_o);CHKERRQ(ierr); 5663c07aadSStefano Zampini for (i=0; i<n_o; i++) { 5763c07aadSStefano Zampini nnz_o[i] = ia_o[i+1] - ia_o[i]; 5863c07aadSStefano Zampini } 5963c07aadSStefano Zampini } 6063c07aadSStefano Zampini ierr = MatRestoreRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);CHKERRQ(ierr); 6163c07aadSStefano Zampini } 6263c07aadSStefano Zampini if (done_d) { /* set number of nonzeros in HYPRE IJ matrix */ 6363c07aadSStefano Zampini if (!done_o) { /* only diagonal part */ 6463c07aadSStefano Zampini ierr = PetscMalloc1(n_d,&nnz_o);CHKERRQ(ierr); 6563c07aadSStefano Zampini for (i=0; i<n_d; i++) { 6663c07aadSStefano Zampini nnz_o[i] = 0; 6763c07aadSStefano Zampini } 6863c07aadSStefano Zampini } 6963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,(HYPRE_Int *)nnz_d,(HYPRE_Int *)nnz_o)); 7063c07aadSStefano Zampini ierr = PetscFree(nnz_d);CHKERRQ(ierr); 7163c07aadSStefano Zampini ierr = PetscFree(nnz_o);CHKERRQ(ierr); 7263c07aadSStefano Zampini } 7363c07aadSStefano Zampini PetscFunctionReturn(0); 7463c07aadSStefano Zampini } 7563c07aadSStefano Zampini 7663c07aadSStefano Zampini #undef __FUNCT__ 7763c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_CreateFromMat" 7863c07aadSStefano Zampini static PetscErrorCode MatHYPRE_CreateFromMat(Mat A, Mat_HYPRE *hA) 7963c07aadSStefano Zampini { 8063c07aadSStefano Zampini PetscErrorCode ierr; 8163c07aadSStefano Zampini PetscInt rstart,rend,cstart,cend; 8263c07aadSStefano Zampini 8363c07aadSStefano Zampini PetscFunctionBegin; 84d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 85d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 8663c07aadSStefano Zampini rstart = A->rmap->rstart; 8763c07aadSStefano Zampini rend = A->rmap->rend; 8863c07aadSStefano Zampini cstart = A->cmap->rstart; 8963c07aadSStefano Zampini cend = A->cmap->rend; 9063c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rstart,rend-1,cstart,cend-1,&hA->ij)); 9163c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 9263c07aadSStefano Zampini { 9363c07aadSStefano Zampini PetscBool same; 9463c07aadSStefano Zampini Mat A_d,A_o; 9563c07aadSStefano Zampini const PetscInt *colmap; 9663c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&same);CHKERRQ(ierr); 9763c07aadSStefano Zampini if (same) { 9863c07aadSStefano Zampini ierr = MatMPIAIJGetSeqAIJ(A,&A_d,&A_o,&colmap);CHKERRQ(ierr); 9963c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A_d,A_o,hA->ij);CHKERRQ(ierr); 10063c07aadSStefano Zampini PetscFunctionReturn(0); 10163c07aadSStefano Zampini } 10263c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&same);CHKERRQ(ierr); 10363c07aadSStefano Zampini if (same) { 10463c07aadSStefano Zampini ierr = MatMPIBAIJGetSeqBAIJ(A,&A_d,&A_o,&colmap);CHKERRQ(ierr); 10563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A_d,A_o,hA->ij);CHKERRQ(ierr); 10663c07aadSStefano Zampini PetscFunctionReturn(0); 10763c07aadSStefano Zampini } 10863c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&same);CHKERRQ(ierr); 10963c07aadSStefano Zampini if (same) { 11063c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A,NULL,hA->ij);CHKERRQ(ierr); 11163c07aadSStefano Zampini PetscFunctionReturn(0); 11263c07aadSStefano Zampini } 11363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&same);CHKERRQ(ierr); 11463c07aadSStefano Zampini if (same) { 11563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixPreallocate(A,NULL,hA->ij);CHKERRQ(ierr); 11663c07aadSStefano Zampini PetscFunctionReturn(0); 11763c07aadSStefano Zampini } 11863c07aadSStefano Zampini } 11963c07aadSStefano Zampini PetscFunctionReturn(0); 12063c07aadSStefano Zampini } 12163c07aadSStefano Zampini 12263c07aadSStefano Zampini #undef __FUNCT__ 12363c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixCopy" 12463c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixCopy(Mat A, HYPRE_IJMatrix ij) 12563c07aadSStefano Zampini { 12663c07aadSStefano Zampini PetscErrorCode ierr; 12763c07aadSStefano Zampini PetscInt i,rstart,rend,ncols,nr,nc; 12863c07aadSStefano Zampini const PetscScalar *values; 12963c07aadSStefano Zampini const PetscInt *cols; 13063c07aadSStefano Zampini PetscBool flg; 13163c07aadSStefano Zampini 13263c07aadSStefano Zampini PetscFunctionBegin; 13363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);CHKERRQ(ierr); 13463c07aadSStefano Zampini ierr = MatGetSize(A,&nr,&nc);CHKERRQ(ierr); 13563c07aadSStefano Zampini if (flg && nr == nc) { 13663c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixFastCopy_MPIAIJ(A,ij);CHKERRQ(ierr); 13763c07aadSStefano Zampini PetscFunctionReturn(0); 13863c07aadSStefano Zampini } 13963c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);CHKERRQ(ierr); 14063c07aadSStefano Zampini if (flg) { 14163c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixFastCopy_SeqAIJ(A,ij);CHKERRQ(ierr); 14263c07aadSStefano Zampini PetscFunctionReturn(0); 14363c07aadSStefano Zampini } 14463c07aadSStefano Zampini 14563c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 14663c07aadSStefano Zampini ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 14763c07aadSStefano Zampini for (i=rstart; i<rend; i++) { 14863c07aadSStefano Zampini ierr = MatGetRow(A,i,&ncols,&cols,&values);CHKERRQ(ierr); 14963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetValues,(ij,1,(HYPRE_Int *)&ncols,(HYPRE_Int *)&i,(HYPRE_Int *)cols,values)); 15063c07aadSStefano Zampini ierr = MatRestoreRow(A,i,&ncols,&cols,&values);CHKERRQ(ierr); 15163c07aadSStefano Zampini } 15263c07aadSStefano Zampini PetscFunctionReturn(0); 15363c07aadSStefano Zampini } 15463c07aadSStefano Zampini 15563c07aadSStefano Zampini #undef __FUNCT__ 15663c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixFastCopy_SeqAIJ" 15763c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat A, HYPRE_IJMatrix ij) 15863c07aadSStefano Zampini { 15963c07aadSStefano Zampini PetscErrorCode ierr; 16063c07aadSStefano Zampini Mat_SeqAIJ *pdiag = (Mat_SeqAIJ*)A->data; 16158968eb6SStefano Zampini HYPRE_Int type; 16263c07aadSStefano Zampini hypre_ParCSRMatrix *par_matrix; 16363c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 16463c07aadSStefano Zampini hypre_CSRMatrix *hdiag; 16563c07aadSStefano Zampini 16663c07aadSStefano Zampini PetscFunctionBegin; 16763c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 168ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(ij,&type)); 169ea9daf28SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 170ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(ij,(void**)&par_matrix)); 17163c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(par_matrix); 17263c07aadSStefano Zampini /* 17363c07aadSStefano Zampini this is the Hack part where we monkey directly with the hypre datastructures 17463c07aadSStefano Zampini */ 17563c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->i,pdiag->i,(A->rmap->n + 1)*sizeof(PetscInt)); 17663c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->j,pdiag->j,pdiag->nz*sizeof(PetscInt)); 17763c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar)); 178ea9daf28SStefano Zampini 179ea9daf28SStefano Zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); 18063c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 18163c07aadSStefano Zampini PetscFunctionReturn(0); 18263c07aadSStefano Zampini } 18363c07aadSStefano Zampini 18463c07aadSStefano Zampini #undef __FUNCT__ 18563c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixFastCopy_MPIAIJ" 18663c07aadSStefano Zampini static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) 18763c07aadSStefano Zampini { 18863c07aadSStefano Zampini PetscErrorCode ierr; 18963c07aadSStefano Zampini Mat_MPIAIJ *pA = (Mat_MPIAIJ*)A->data; 19063c07aadSStefano Zampini Mat_SeqAIJ *pdiag,*poffd; 19163c07aadSStefano Zampini PetscInt i,*garray = pA->garray,*jj,cstart,*pjj; 19258968eb6SStefano Zampini HYPRE_Int type; 19363c07aadSStefano Zampini hypre_ParCSRMatrix *par_matrix; 19463c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 19563c07aadSStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 19663c07aadSStefano Zampini 19763c07aadSStefano Zampini PetscFunctionBegin; 19863c07aadSStefano Zampini pdiag = (Mat_SeqAIJ*) pA->A->data; 19963c07aadSStefano Zampini poffd = (Mat_SeqAIJ*) pA->B->data; 20063c07aadSStefano Zampini /* cstart is only valid for square MPIAIJ layed out in the usual way */ 20163c07aadSStefano Zampini ierr = MatGetOwnershipRange(A,&cstart,NULL);CHKERRQ(ierr); 20263c07aadSStefano Zampini 20363c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij)); 204ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(ij,&type)); 205ea9daf28SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 206ea9daf28SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(ij,(void**)&par_matrix)); 20763c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(par_matrix); 20863c07aadSStefano Zampini hoffd = hypre_ParCSRMatrixOffd(par_matrix); 20963c07aadSStefano Zampini 21063c07aadSStefano Zampini /* 21163c07aadSStefano Zampini this is the Hack part where we monkey directly with the hypre datastructures 21263c07aadSStefano Zampini */ 21363c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->i,pdiag->i,(pA->A->rmap->n + 1)*sizeof(PetscInt)); 21463c07aadSStefano Zampini /* need to shift the diag column indices (hdiag->j) back to global numbering since hypre is expecting this */ 21563c07aadSStefano Zampini jj = (PetscInt*)hdiag->j; 21663c07aadSStefano Zampini pjj = (PetscInt*)pdiag->j; 21763c07aadSStefano Zampini for (i=0; i<pdiag->nz; i++) jj[i] = cstart + pjj[i]; 21863c07aadSStefano Zampini ierr = PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar)); 21963c07aadSStefano Zampini ierr = PetscMemcpy(hoffd->i,poffd->i,(pA->A->rmap->n + 1)*sizeof(PetscInt)); 22063c07aadSStefano Zampini /* need to move the offd column indices (hoffd->j) back to global numbering since hypre is expecting this 22163c07aadSStefano Zampini If we hacked a hypre a bit more we might be able to avoid this step */ 22263c07aadSStefano Zampini jj = (PetscInt*) hoffd->j; 22363c07aadSStefano Zampini pjj = (PetscInt*) poffd->j; 22463c07aadSStefano Zampini for (i=0; i<poffd->nz; i++) jj[i] = garray[pjj[i]]; 22563c07aadSStefano Zampini ierr = PetscMemcpy(hoffd->data,poffd->a,poffd->nz*sizeof(PetscScalar)); 22663c07aadSStefano Zampini 227ea9daf28SStefano Zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); 22863c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 22963c07aadSStefano Zampini PetscFunctionReturn(0); 23063c07aadSStefano Zampini } 23163c07aadSStefano Zampini 23263c07aadSStefano Zampini #undef __FUNCT__ 2332df22349SStefano Zampini #define __FUNCT__ "MatConvert_HYPRE_IS" 2342df22349SStefano Zampini static PetscErrorCode MatConvert_HYPRE_IS(Mat A, MatType mtype, MatReuse reuse, Mat* B) 2352df22349SStefano Zampini { 2362df22349SStefano Zampini Mat_HYPRE* mhA = (Mat_HYPRE*)(A->data); 2372df22349SStefano Zampini Mat lA; 2382df22349SStefano Zampini ISLocalToGlobalMapping rl2g,cl2g; 2392df22349SStefano Zampini IS is; 2402df22349SStefano Zampini hypre_ParCSRMatrix *hA; 2412df22349SStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 2422df22349SStefano Zampini MPI_Comm comm; 2432df22349SStefano Zampini PetscScalar *hdd,*hod,*aa,*data; 2447d968826Sstefano_zampini HYPRE_Int *col_map_offd,*hdi,*hdj,*hoi,*hoj; 2452df22349SStefano Zampini PetscInt *ii,*jj,*iptr,*jptr; 2462df22349SStefano Zampini PetscInt cum,dr,dc,oc,str,stc,nnz,i,jd,jo,M,N; 24758968eb6SStefano Zampini HYPRE_Int type; 2482df22349SStefano Zampini PetscErrorCode ierr; 2492df22349SStefano Zampini 2502df22349SStefano Zampini PetscFunctionBegin; 251a1787963SStefano Zampini comm = PetscObjectComm((PetscObject)A); 2522df22349SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(mhA->ij,&type)); 2532df22349SStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 2542df22349SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(mhA->ij,(void**)&hA)); 2552df22349SStefano Zampini M = hypre_ParCSRMatrixGlobalNumRows(hA); 2562df22349SStefano Zampini N = hypre_ParCSRMatrixGlobalNumCols(hA); 2572df22349SStefano Zampini str = hypre_ParCSRMatrixFirstRowIndex(hA); 2582df22349SStefano Zampini stc = hypre_ParCSRMatrixFirstColDiag(hA); 2592df22349SStefano Zampini hdiag = hypre_ParCSRMatrixDiag(hA); 2602df22349SStefano Zampini hoffd = hypre_ParCSRMatrixOffd(hA); 2612df22349SStefano Zampini dr = hypre_CSRMatrixNumRows(hdiag); 2622df22349SStefano Zampini dc = hypre_CSRMatrixNumCols(hdiag); 2632df22349SStefano Zampini nnz = hypre_CSRMatrixNumNonzeros(hdiag); 2642df22349SStefano Zampini hdi = hypre_CSRMatrixI(hdiag); 2652df22349SStefano Zampini hdj = hypre_CSRMatrixJ(hdiag); 2662df22349SStefano Zampini hdd = hypre_CSRMatrixData(hdiag); 2672df22349SStefano Zampini oc = hypre_CSRMatrixNumCols(hoffd); 2682df22349SStefano Zampini nnz += hypre_CSRMatrixNumNonzeros(hoffd); 2692df22349SStefano Zampini hoi = hypre_CSRMatrixI(hoffd); 2702df22349SStefano Zampini hoj = hypre_CSRMatrixJ(hoffd); 2712df22349SStefano Zampini hod = hypre_CSRMatrixData(hoffd); 2722df22349SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 2732df22349SStefano Zampini PetscInt *aux; 2742df22349SStefano Zampini 2752df22349SStefano Zampini /* generate l2g maps for rows and cols */ 2762df22349SStefano Zampini ierr = ISCreateStride(comm,dr,str,1,&is);CHKERRQ(ierr); 2772df22349SStefano Zampini ierr = ISLocalToGlobalMappingCreateIS(is,&rl2g);CHKERRQ(ierr); 2782df22349SStefano Zampini ierr = ISDestroy(&is);CHKERRQ(ierr); 2792df22349SStefano Zampini col_map_offd = hypre_ParCSRMatrixColMapOffd(hA); 2802df22349SStefano Zampini ierr = PetscMalloc1(dc+oc,&aux);CHKERRQ(ierr); 2812df22349SStefano Zampini for (i=0; i<dc; i++) aux[i] = i+stc; 2822df22349SStefano Zampini for (i=0; i<oc; i++) aux[i+dc] = col_map_offd[i]; 2832df22349SStefano Zampini ierr = ISCreateGeneral(comm,dc+oc,aux,PETSC_OWN_POINTER,&is);CHKERRQ(ierr); 2842df22349SStefano Zampini ierr = ISLocalToGlobalMappingCreateIS(is,&cl2g);CHKERRQ(ierr); 2852df22349SStefano Zampini ierr = ISDestroy(&is);CHKERRQ(ierr); 2862df22349SStefano Zampini /* create MATIS object */ 2872df22349SStefano Zampini ierr = MatCreate(comm,B);CHKERRQ(ierr); 2882df22349SStefano Zampini ierr = MatSetSizes(*B,dr,dc,M,N);CHKERRQ(ierr); 2892df22349SStefano Zampini ierr = MatSetType(*B,MATIS);CHKERRQ(ierr); 2902df22349SStefano Zampini ierr = MatSetLocalToGlobalMapping(*B,rl2g,cl2g);CHKERRQ(ierr); 2912df22349SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&rl2g);CHKERRQ(ierr); 2922df22349SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&cl2g);CHKERRQ(ierr); 2932df22349SStefano Zampini 2942df22349SStefano Zampini /* allocate CSR for local matrix */ 2952df22349SStefano Zampini ierr = PetscMalloc1(dr+1,&iptr);CHKERRQ(ierr); 2962df22349SStefano Zampini ierr = PetscMalloc1(nnz,&jptr);CHKERRQ(ierr); 2972df22349SStefano Zampini ierr = PetscMalloc1(nnz,&data);CHKERRQ(ierr); 2982df22349SStefano Zampini } else { 2992df22349SStefano Zampini PetscInt nr; 3002df22349SStefano Zampini PetscBool done; 3012df22349SStefano Zampini ierr = MatISGetLocalMat(*B,&lA);CHKERRQ(ierr); 3022df22349SStefano Zampini ierr = MatGetRowIJ(lA,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&iptr,(const PetscInt**)&jptr,&done);CHKERRQ(ierr); 3032df22349SStefano Zampini if (nr != dr) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of rows in local mat! %D != %D",nr,dr); 3042df22349SStefano Zampini if (iptr[nr] < nnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in local mat! reuse %D requested %D",iptr[nr],nnz); 3052df22349SStefano Zampini ierr = MatSeqAIJGetArray(lA,&data);CHKERRQ(ierr); 3062df22349SStefano Zampini } 3072df22349SStefano Zampini /* merge local matrices */ 3082df22349SStefano Zampini ii = iptr; 3092df22349SStefano Zampini jj = jptr; 3102df22349SStefano Zampini aa = data; 3112df22349SStefano Zampini *ii = *(hdi++) + *(hoi++); 3122df22349SStefano Zampini for (jd=0,jo=0,cum=0; *ii<nnz; cum++) { 3132df22349SStefano Zampini PetscScalar *aold = aa; 3142df22349SStefano Zampini PetscInt *jold = jj,nc = jd+jo; 3152df22349SStefano Zampini for (; jd<*hdi; jd++) { *jj++ = *hdj++; *aa++ = *hdd++; } 3162df22349SStefano Zampini for (; jo<*hoi; jo++) { *jj++ = *hoj++ + dc; *aa++ = *hod++; } 3172df22349SStefano Zampini *(++ii) = *(hdi++) + *(hoi++); 3182df22349SStefano Zampini ierr = PetscSortIntWithScalarArray(jd+jo-nc,jold,aold);CHKERRQ(ierr); 3192df22349SStefano Zampini } 3202df22349SStefano Zampini for (; cum<dr; cum++) *(++ii) = nnz; 3212df22349SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 322a033916dSStefano Zampini Mat_SeqAIJ* a; 323a033916dSStefano Zampini 3242df22349SStefano Zampini ierr = MatCreateSeqAIJWithArrays(PETSC_COMM_SELF,dr,dc+oc,iptr,jptr,data,&lA);CHKERRQ(ierr); 3252df22349SStefano Zampini ierr = MatISSetLocalMat(*B,lA);CHKERRQ(ierr); 326a033916dSStefano Zampini /* hack SeqAIJ */ 327a033916dSStefano Zampini a = (Mat_SeqAIJ*)(lA->data); 328a033916dSStefano Zampini a->free_a = PETSC_TRUE; 329a033916dSStefano Zampini a->free_ij = PETSC_TRUE; 3302df22349SStefano Zampini ierr = MatDestroy(&lA);CHKERRQ(ierr); 3312df22349SStefano Zampini } 3322df22349SStefano Zampini ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3332df22349SStefano Zampini ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3342df22349SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 3352df22349SStefano Zampini ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 3362df22349SStefano Zampini } 3372df22349SStefano Zampini PetscFunctionReturn(0); 3382df22349SStefano Zampini } 3392df22349SStefano Zampini 3402df22349SStefano Zampini #undef __FUNCT__ 34163c07aadSStefano Zampini #define __FUNCT__ "MatConvert_AIJ_HYPRE" 34263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat A, MatType type, MatReuse reuse, Mat *B) 34363c07aadSStefano Zampini { 34463c07aadSStefano Zampini Mat_HYPRE *hB; 34563c07aadSStefano Zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 34663c07aadSStefano Zampini PetscErrorCode ierr; 34763c07aadSStefano Zampini 34863c07aadSStefano Zampini PetscFunctionBegin; 34963c07aadSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported MAT_INPLACE_MATRIX"); 35063c07aadSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 35163c07aadSStefano Zampini /* always destroy the old matrix and create a new memory; 35263c07aadSStefano Zampini hope this does not churn the memory too much. The problem 35363c07aadSStefano Zampini is I do not know if it is possible to put the matrix back to 35463c07aadSStefano Zampini its initial state so that we can directly copy the values 35563c07aadSStefano Zampini the second time through. */ 35663c07aadSStefano Zampini hB = (Mat_HYPRE*)((*B)->data); 35763c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixDestroy,(hB->ij)); 35863c07aadSStefano Zampini } else { 35963c07aadSStefano Zampini ierr = MatCreate(comm,B);CHKERRQ(ierr); 36063c07aadSStefano Zampini ierr = MatSetType(*B,MATHYPRE);CHKERRQ(ierr); 36163c07aadSStefano Zampini ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 36263c07aadSStefano Zampini hB = (Mat_HYPRE*)((*B)->data); 36363c07aadSStefano Zampini } 36463c07aadSStefano Zampini ierr = MatHYPRE_CreateFromMat(A,hB);CHKERRQ(ierr); 36563c07aadSStefano Zampini ierr = MatHYPRE_IJMatrixCopy(A,hB->ij);CHKERRQ(ierr); 3664ec6421dSstefano_zampini (*B)->preallocated = PETSC_TRUE; 36763c07aadSStefano Zampini ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36863c07aadSStefano Zampini ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36963c07aadSStefano Zampini PetscFunctionReturn(0); 37063c07aadSStefano Zampini } 37163c07aadSStefano Zampini 37263c07aadSStefano Zampini #undef __FUNCT__ 37363c07aadSStefano Zampini #define __FUNCT__ "MatConvert_HYPRE_AIJ" 374ea9daf28SStefano Zampini static PetscErrorCode MatConvert_HYPRE_AIJ(Mat A, MatType mtype, MatReuse reuse, Mat *B) 37563c07aadSStefano Zampini { 37663c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 37763c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 37863c07aadSStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 37963c07aadSStefano Zampini MPI_Comm comm; 38063c07aadSStefano Zampini PetscScalar *da,*oa,*aptr; 38163c07aadSStefano Zampini PetscInt *dii,*djj,*oii,*ojj,*iptr; 38263c07aadSStefano Zampini PetscInt i,dnnz,onnz,m,n; 38358968eb6SStefano Zampini HYPRE_Int type; 38463c07aadSStefano Zampini PetscMPIInt size; 38563c07aadSStefano Zampini PetscErrorCode ierr; 38663c07aadSStefano Zampini 38763c07aadSStefano Zampini PetscFunctionBegin; 38863c07aadSStefano Zampini comm = PetscObjectComm((PetscObject)A); 38963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 39063c07aadSStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 39163c07aadSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 39263c07aadSStefano Zampini PetscBool ismpiaij,isseqaij; 39363c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*B,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 39463c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*B,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 39563c07aadSStefano Zampini if (!ismpiaij && !isseqaij) SETERRQ(comm,PETSC_ERR_SUP,"Only MATMPIAIJ or MATSEQAIJ are supported"); 39663c07aadSStefano Zampini } 39763c07aadSStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 39863c07aadSStefano Zampini 39963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&parcsr)); 40063c07aadSStefano Zampini hdiag = hypre_ParCSRMatrixDiag(parcsr); 40163c07aadSStefano Zampini hoffd = hypre_ParCSRMatrixOffd(parcsr); 40263c07aadSStefano Zampini m = hypre_CSRMatrixNumRows(hdiag); 40363c07aadSStefano Zampini n = hypre_CSRMatrixNumCols(hdiag); 40463c07aadSStefano Zampini dnnz = hypre_CSRMatrixNumNonzeros(hdiag); 40563c07aadSStefano Zampini onnz = hypre_CSRMatrixNumNonzeros(hoffd); 406225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 40763c07aadSStefano Zampini ierr = PetscMalloc1(m+1,&dii);CHKERRQ(ierr); 40863c07aadSStefano Zampini ierr = PetscMalloc1(dnnz,&djj);CHKERRQ(ierr); 40963c07aadSStefano Zampini ierr = PetscMalloc1(dnnz,&da);CHKERRQ(ierr); 410225daaf8SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 41163c07aadSStefano Zampini PetscInt nr; 41263c07aadSStefano Zampini PetscBool done; 41363c07aadSStefano Zampini if (size > 1) { 41463c07aadSStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)((*B)->data); 41563c07aadSStefano Zampini 41663c07aadSStefano Zampini ierr = MatGetRowIJ(b->A,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&dii,(const PetscInt**)&djj,&done);CHKERRQ(ierr); 41763c07aadSStefano Zampini if (nr != m) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows in diag part! %D != %D",nr,m); 41863c07aadSStefano Zampini if (dii[nr] < dnnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in diag part! reuse %D hypre %D",dii[nr],dnnz); 41963c07aadSStefano Zampini ierr = MatSeqAIJGetArray(b->A,&da);CHKERRQ(ierr); 42063c07aadSStefano Zampini } else { 42163c07aadSStefano Zampini ierr = MatGetRowIJ(*B,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&dii,(const PetscInt**)&djj,&done);CHKERRQ(ierr); 42263c07aadSStefano Zampini if (nr != m) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows! %D != %D",nr,m); 42363c07aadSStefano Zampini if (dii[nr] < dnnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros! reuse %D hypre %D",dii[nr],dnnz); 42463c07aadSStefano Zampini ierr = MatSeqAIJGetArray(*B,&da);CHKERRQ(ierr); 42563c07aadSStefano Zampini } 426225daaf8SStefano Zampini } else { /* MAT_INPLACE_MATRIX */ 4277d968826Sstefano_zampini dii = (PetscInt*)hypre_CSRMatrixI(hdiag); 4287d968826Sstefano_zampini djj = (PetscInt*)hypre_CSRMatrixJ(hdiag); 429225daaf8SStefano Zampini da = hypre_CSRMatrixData(hdiag); 43063c07aadSStefano Zampini } 43163c07aadSStefano Zampini ierr = PetscMemcpy(dii,hypre_CSRMatrixI(hdiag),(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 43263c07aadSStefano Zampini ierr = PetscMemcpy(djj,hypre_CSRMatrixJ(hdiag),dnnz*sizeof(PetscInt));CHKERRQ(ierr); 43363c07aadSStefano Zampini ierr = PetscMemcpy(da,hypre_CSRMatrixData(hdiag),dnnz*sizeof(PetscScalar));CHKERRQ(ierr); 43463c07aadSStefano Zampini iptr = djj; 43563c07aadSStefano Zampini aptr = da; 43663c07aadSStefano Zampini for (i=0; i<m; i++) { 43763c07aadSStefano Zampini PetscInt nc = dii[i+1]-dii[i]; 43863c07aadSStefano Zampini ierr = PetscSortIntWithScalarArray(nc,iptr,aptr);CHKERRQ(ierr); 43963c07aadSStefano Zampini iptr += nc; 44063c07aadSStefano Zampini aptr += nc; 44163c07aadSStefano Zampini } 44263c07aadSStefano Zampini if (size > 1) { 4437d968826Sstefano_zampini HYPRE_Int *offdj,*coffd; 44463c07aadSStefano Zampini 445225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 44663c07aadSStefano Zampini ierr = PetscMalloc1(m+1,&oii);CHKERRQ(ierr); 44763c07aadSStefano Zampini ierr = PetscMalloc1(onnz,&ojj);CHKERRQ(ierr); 44863c07aadSStefano Zampini ierr = PetscMalloc1(onnz,&oa);CHKERRQ(ierr); 449225daaf8SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 45063c07aadSStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)((*B)->data); 45163c07aadSStefano Zampini PetscInt nr,hr = hypre_CSRMatrixNumRows(hoffd); 45263c07aadSStefano Zampini PetscBool done; 45363c07aadSStefano Zampini 45463c07aadSStefano Zampini ierr = MatGetRowIJ(b->B,0,PETSC_FALSE,PETSC_FALSE,&nr,(const PetscInt**)&oii,(const PetscInt**)&ojj,&done);CHKERRQ(ierr); 45563c07aadSStefano Zampini if (nr != hr) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of local rows in offdiag part! %D != %D",nr,hr); 45663c07aadSStefano Zampini if (oii[nr] < onnz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Cannot reuse mat: invalid number of nonzeros in offdiag part! reuse %D hypre %D",oii[nr],onnz); 45763c07aadSStefano Zampini ierr = MatSeqAIJGetArray(b->B,&oa);CHKERRQ(ierr); 458225daaf8SStefano Zampini } else { /* MAT_INPLACE_MATRIX */ 4597d968826Sstefano_zampini oii = (PetscInt*)hypre_CSRMatrixI(hoffd); 4607d968826Sstefano_zampini ojj = (PetscInt*)hypre_CSRMatrixJ(hoffd); 461225daaf8SStefano Zampini oa = hypre_CSRMatrixData(hoffd); 46263c07aadSStefano Zampini } 46363c07aadSStefano Zampini ierr = PetscMemcpy(oii,hypre_CSRMatrixI(hoffd),(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 46463c07aadSStefano Zampini offdj = hypre_CSRMatrixJ(hoffd); 46563c07aadSStefano Zampini coffd = hypre_ParCSRMatrixColMapOffd(parcsr); 46663c07aadSStefano Zampini for (i=0; i<onnz; i++) ojj[i] = coffd[offdj[i]]; 46763c07aadSStefano Zampini ierr = PetscMemcpy(oa,hypre_CSRMatrixData(hoffd),onnz*sizeof(PetscScalar));CHKERRQ(ierr); 46863c07aadSStefano Zampini iptr = ojj; 46963c07aadSStefano Zampini aptr = oa; 47063c07aadSStefano Zampini for (i=0; i<m; i++) { 47163c07aadSStefano Zampini PetscInt nc = oii[i+1]-oii[i]; 47263c07aadSStefano Zampini ierr = PetscSortIntWithScalarArray(nc,iptr,aptr);CHKERRQ(ierr); 47363c07aadSStefano Zampini iptr += nc; 47463c07aadSStefano Zampini aptr += nc; 47563c07aadSStefano Zampini } 476225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 47763c07aadSStefano Zampini Mat_MPIAIJ *b; 47863c07aadSStefano Zampini Mat_SeqAIJ *d,*o; 479225daaf8SStefano Zampini 48041073d71Sstefano_zampini ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,PETSC_DECIDE,PETSC_DECIDE,dii,djj,da,oii,ojj,oa,B);CHKERRQ(ierr); 48163c07aadSStefano Zampini /* hack MPIAIJ */ 48263c07aadSStefano Zampini b = (Mat_MPIAIJ*)((*B)->data); 48363c07aadSStefano Zampini d = (Mat_SeqAIJ*)b->A->data; 48463c07aadSStefano Zampini o = (Mat_SeqAIJ*)b->B->data; 48563c07aadSStefano Zampini d->free_a = PETSC_TRUE; 48663c07aadSStefano Zampini d->free_ij = PETSC_TRUE; 48763c07aadSStefano Zampini o->free_a = PETSC_TRUE; 48863c07aadSStefano Zampini o->free_ij = PETSC_TRUE; 489225daaf8SStefano Zampini } else if (reuse == MAT_INPLACE_MATRIX) { 490225daaf8SStefano Zampini Mat T; 49141073d71Sstefano_zampini ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,PETSC_DECIDE,PETSC_DECIDE,dii,djj,da,oii,ojj,oa,&T);CHKERRQ(ierr); 492225daaf8SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 493225daaf8SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 494225daaf8SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 495225daaf8SStefano Zampini hypre_CSRMatrixI(hoffd) = NULL; 496225daaf8SStefano Zampini hypre_CSRMatrixJ(hoffd) = NULL; 497225daaf8SStefano Zampini hypre_CSRMatrixData(hoffd) = NULL; 498225daaf8SStefano Zampini ierr = MatHeaderReplace(A,&T);CHKERRQ(ierr); 49963c07aadSStefano Zampini } 500225daaf8SStefano Zampini } else { 501225daaf8SStefano Zampini oii = NULL; 502225daaf8SStefano Zampini ojj = NULL; 503225daaf8SStefano Zampini oa = NULL; 504225daaf8SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 50563c07aadSStefano Zampini Mat_SeqAIJ* b; 50663c07aadSStefano Zampini ierr = MatCreateSeqAIJWithArrays(comm,m,n,dii,djj,da,B);CHKERRQ(ierr); 50763c07aadSStefano Zampini /* hack SeqAIJ */ 50863c07aadSStefano Zampini b = (Mat_SeqAIJ*)((*B)->data); 50963c07aadSStefano Zampini b->free_a = PETSC_TRUE; 51063c07aadSStefano Zampini b->free_ij = PETSC_TRUE; 511225daaf8SStefano Zampini } else if (reuse == MAT_INPLACE_MATRIX) { 512225daaf8SStefano Zampini Mat T; 513225daaf8SStefano Zampini ierr = MatCreateSeqAIJWithArrays(comm,m,n,dii,djj,da,&T);CHKERRQ(ierr); 514225daaf8SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 515225daaf8SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 516225daaf8SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 517225daaf8SStefano Zampini ierr = MatHeaderReplace(A,&T);CHKERRQ(ierr); 51863c07aadSStefano Zampini } 519225daaf8SStefano Zampini } 520225daaf8SStefano Zampini 521225daaf8SStefano Zampini /* we have to use hypre_Tfree to free the arrays */ 52263c07aadSStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 523225daaf8SStefano Zampini void *ptrs[6] = {dii,djj,da,oii,ojj,oa}; 524225daaf8SStefano Zampini const char *names[6] = {"_hypre_csr_dii", 525225daaf8SStefano Zampini "_hypre_csr_djj", 526225daaf8SStefano Zampini "_hypre_csr_da", 527225daaf8SStefano Zampini "_hypre_csr_oii", 528225daaf8SStefano Zampini "_hypre_csr_ojj", 529225daaf8SStefano Zampini "_hypre_csr_oa"}; 530225daaf8SStefano Zampini for (i=0; i<6; i++) { 531225daaf8SStefano Zampini PetscContainer c; 532225daaf8SStefano Zampini 533225daaf8SStefano Zampini ierr = PetscContainerCreate(comm,&c);CHKERRQ(ierr); 534225daaf8SStefano Zampini ierr = PetscContainerSetPointer(c,ptrs[i]);CHKERRQ(ierr); 535225daaf8SStefano Zampini ierr = PetscContainerSetUserDestroy(c,hypre_array_destroy);CHKERRQ(ierr); 536225daaf8SStefano Zampini ierr = PetscObjectCompose((PetscObject)(*B),names[i],(PetscObject)c);CHKERRQ(ierr); 537225daaf8SStefano Zampini ierr = PetscContainerDestroy(&c);CHKERRQ(ierr); 538225daaf8SStefano Zampini } 53963c07aadSStefano Zampini } 54063c07aadSStefano Zampini PetscFunctionReturn(0); 54163c07aadSStefano Zampini } 54263c07aadSStefano Zampini 54363c07aadSStefano Zampini #undef __FUNCT__ 544*613e5ff0Sstefano_zampini #define __FUNCT__ "MatAIJGetParCSR_Private" 545*613e5ff0Sstefano_zampini static PetscErrorCode MatAIJGetParCSR_Private(Mat A, hypre_ParCSRMatrix **hA) 546c1a070e6SStefano Zampini { 547*613e5ff0Sstefano_zampini hypre_ParCSRMatrix *tA; 548c1a070e6SStefano Zampini hypre_CSRMatrix *hdiag,*hoffd; 549c1a070e6SStefano Zampini Mat_SeqAIJ *diag,*offd; 550c1a070e6SStefano Zampini PetscInt *garray,noffd,dnnz,onnz,*row_starts,*col_starts; 551c1a070e6SStefano Zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 552*613e5ff0Sstefano_zampini PetscBool ismpiaij,isseqaij; 553c1a070e6SStefano Zampini PetscErrorCode ierr; 554c1a070e6SStefano Zampini 555c1a070e6SStefano Zampini PetscFunctionBegin; 556c1a070e6SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 557c1a070e6SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 558c1a070e6SStefano Zampini if (!ismpiaij && !isseqaij) SETERRQ1(comm,PETSC_ERR_SUP,"Unsupported type %s",((PetscObject)A)->type); 559c1a070e6SStefano Zampini if (ismpiaij) { 560c1a070e6SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ*)(A->data); 561c1a070e6SStefano Zampini 562c1a070e6SStefano Zampini diag = (Mat_SeqAIJ*)a->A->data; 563c1a070e6SStefano Zampini offd = (Mat_SeqAIJ*)a->B->data; 564c1a070e6SStefano Zampini garray = a->garray; 565c1a070e6SStefano Zampini noffd = a->B->cmap->N; 566c1a070e6SStefano Zampini dnnz = diag->nz; 567c1a070e6SStefano Zampini onnz = offd->nz; 568c1a070e6SStefano Zampini } else { 569c1a070e6SStefano Zampini diag = (Mat_SeqAIJ*)A->data; 570c1a070e6SStefano Zampini offd = NULL; 571c1a070e6SStefano Zampini garray = NULL; 572c1a070e6SStefano Zampini noffd = 0; 573c1a070e6SStefano Zampini dnnz = diag->nz; 574c1a070e6SStefano Zampini onnz = 0; 575c1a070e6SStefano Zampini } 576225daaf8SStefano Zampini 577c1a070e6SStefano Zampini /* create a temporary ParCSR */ 578c1a070e6SStefano Zampini if (HYPRE_AssumedPartitionCheck()) { 579c1a070e6SStefano Zampini PetscMPIInt myid; 580c1a070e6SStefano Zampini 581c1a070e6SStefano Zampini ierr = MPI_Comm_rank(comm,&myid);CHKERRQ(ierr); 582c1a070e6SStefano Zampini row_starts = A->rmap->range + myid; 583c1a070e6SStefano Zampini col_starts = A->cmap->range + myid; 584c1a070e6SStefano Zampini } else { 585c1a070e6SStefano Zampini row_starts = A->rmap->range; 586c1a070e6SStefano Zampini col_starts = A->cmap->range; 587c1a070e6SStefano Zampini } 5887d968826Sstefano_zampini tA = hypre_ParCSRMatrixCreate(comm,A->rmap->N,A->cmap->N,(HYPRE_Int*)row_starts,(HYPRE_Int*)col_starts,noffd,dnnz,onnz); 589c1a070e6SStefano Zampini hypre_ParCSRMatrixSetRowStartsOwner(tA,0); 590c1a070e6SStefano Zampini hypre_ParCSRMatrixSetColStartsOwner(tA,0); 591c1a070e6SStefano Zampini 592225daaf8SStefano Zampini /* set diagonal part */ 593c1a070e6SStefano Zampini hdiag = hypre_ParCSRMatrixDiag(tA); 5947d968826Sstefano_zampini hypre_CSRMatrixI(hdiag) = (HYPRE_Int*)diag->i; 5957d968826Sstefano_zampini hypre_CSRMatrixJ(hdiag) = (HYPRE_Int*)diag->j; 596c1a070e6SStefano Zampini hypre_CSRMatrixData(hdiag) = diag->a; 597c1a070e6SStefano Zampini hypre_CSRMatrixNumNonzeros(hdiag) = diag->nz; 598c1a070e6SStefano Zampini hypre_CSRMatrixSetRownnz(hdiag); 599c1a070e6SStefano Zampini hypre_CSRMatrixSetDataOwner(hdiag,0); 600c1a070e6SStefano Zampini 601225daaf8SStefano Zampini /* set offdiagonal part */ 602c1a070e6SStefano Zampini hoffd = hypre_ParCSRMatrixOffd(tA); 603c1a070e6SStefano Zampini if (offd) { 6047d968826Sstefano_zampini hypre_CSRMatrixI(hoffd) = (HYPRE_Int*)offd->i; 6057d968826Sstefano_zampini hypre_CSRMatrixJ(hoffd) = (HYPRE_Int*)offd->j; 606c1a070e6SStefano Zampini hypre_CSRMatrixData(hoffd) = offd->a; 607c1a070e6SStefano Zampini hypre_CSRMatrixNumNonzeros(hoffd) = offd->nz; 608c1a070e6SStefano Zampini hypre_CSRMatrixSetRownnz(hoffd); 609c1a070e6SStefano Zampini hypre_CSRMatrixSetDataOwner(hoffd,0); 610c1a070e6SStefano Zampini hypre_ParCSRMatrixSetNumNonzeros(tA); 6117d968826Sstefano_zampini hypre_ParCSRMatrixColMapOffd(tA) = (HYPRE_Int*)garray; 612c1a070e6SStefano Zampini } 613*613e5ff0Sstefano_zampini *hA = tA; 614*613e5ff0Sstefano_zampini PetscFunctionReturn(0); 615*613e5ff0Sstefano_zampini } 616c1a070e6SStefano Zampini 617*613e5ff0Sstefano_zampini #undef __FUNCT__ 618*613e5ff0Sstefano_zampini #define __FUNCT__ "MatAIJRestoreParCSR_Private" 619*613e5ff0Sstefano_zampini static PetscErrorCode MatAIJRestoreParCSR_Private(Mat A, hypre_ParCSRMatrix **hA) 620*613e5ff0Sstefano_zampini { 621*613e5ff0Sstefano_zampini hypre_CSRMatrix *hdiag,*hoffd; 622c1a070e6SStefano Zampini 623*613e5ff0Sstefano_zampini PetscFunctionBegin; 624*613e5ff0Sstefano_zampini hdiag = hypre_ParCSRMatrixDiag(*hA); 625*613e5ff0Sstefano_zampini hoffd = hypre_ParCSRMatrixOffd(*hA); 626c1a070e6SStefano Zampini /* set pointers to NULL before destroying tA */ 627c1a070e6SStefano Zampini hypre_CSRMatrixI(hdiag) = NULL; 628c1a070e6SStefano Zampini hypre_CSRMatrixJ(hdiag) = NULL; 629c1a070e6SStefano Zampini hypre_CSRMatrixData(hdiag) = NULL; 630c1a070e6SStefano Zampini hypre_CSRMatrixI(hoffd) = NULL; 631c1a070e6SStefano Zampini hypre_CSRMatrixJ(hoffd) = NULL; 632c1a070e6SStefano Zampini hypre_CSRMatrixData(hoffd) = NULL; 633*613e5ff0Sstefano_zampini hypre_ParCSRMatrixColMapOffd(*hA) = NULL; 634*613e5ff0Sstefano_zampini hypre_ParCSRMatrixDestroy(*hA); 635*613e5ff0Sstefano_zampini *hA = NULL; 636*613e5ff0Sstefano_zampini PetscFunctionReturn(0); 637*613e5ff0Sstefano_zampini } 638*613e5ff0Sstefano_zampini 639*613e5ff0Sstefano_zampini /* calls RAP from BoomerAMG: 640*613e5ff0Sstefano_zampini the resulting ParCSR will not own the column and row starts */ 641*613e5ff0Sstefano_zampini #undef __FUNCT__ 642*613e5ff0Sstefano_zampini #define __FUNCT__ "MatHYPRE_ParCSR_RAP" 643*613e5ff0Sstefano_zampini static PetscErrorCode MatHYPRE_ParCSR_RAP(hypre_ParCSRMatrix *hR, hypre_ParCSRMatrix *hA, 644*613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hP, hypre_ParCSRMatrix **hRAP) 645*613e5ff0Sstefano_zampini { 646*613e5ff0Sstefano_zampini PetscErrorCode ierr; 647*613e5ff0Sstefano_zampini HYPRE_Int P_owns_col_starts,R_owns_row_starts; 648*613e5ff0Sstefano_zampini 649*613e5ff0Sstefano_zampini PetscFunctionBegin; 650*613e5ff0Sstefano_zampini P_owns_col_starts = hypre_ParCSRMatrixOwnsColStarts(hP); 651*613e5ff0Sstefano_zampini R_owns_row_starts = hypre_ParCSRMatrixOwnsRowStarts(hR); 652*613e5ff0Sstefano_zampini PetscStackCallStandard(hypre_BoomerAMGBuildCoarseOperator,(hR,hA,hP,hRAP)); 653*613e5ff0Sstefano_zampini PetscStackCallStandard(hypre_ParCSRMatrixSetNumNonzeros,(*hRAP)); 654*613e5ff0Sstefano_zampini /* hypre_BoomerAMGBuildCoarseOperator steals the col_starts from P and the row_starts from R */ 655*613e5ff0Sstefano_zampini hypre_ParCSRMatrixSetRowStartsOwner(*hRAP,0); 656*613e5ff0Sstefano_zampini hypre_ParCSRMatrixSetColStartsOwner(*hRAP,0); 657*613e5ff0Sstefano_zampini if (P_owns_col_starts) hypre_ParCSRMatrixSetColStartsOwner(hP,1); 658*613e5ff0Sstefano_zampini if (R_owns_row_starts) hypre_ParCSRMatrixSetRowStartsOwner(hR,1); 659*613e5ff0Sstefano_zampini PetscFunctionReturn(0); 660*613e5ff0Sstefano_zampini } 661*613e5ff0Sstefano_zampini 662*613e5ff0Sstefano_zampini #undef __FUNCT__ 663*613e5ff0Sstefano_zampini #define __FUNCT__ "MatPtAP_AIJ_AIJ_wHYPRE" 664*613e5ff0Sstefano_zampini PETSC_INTERN PetscErrorCode MatPtAP_AIJ_AIJ_wHYPRE(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) 665*613e5ff0Sstefano_zampini { 666*613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hA,*hP,*hPtAP; 667*613e5ff0Sstefano_zampini PetscErrorCode ierr; 668*613e5ff0Sstefano_zampini 669*613e5ff0Sstefano_zampini PetscFunctionBegin; 670*613e5ff0Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 671*613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(A,&hA);CHKERRQ(ierr); 672*613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(P,&hP);CHKERRQ(ierr); 673*613e5ff0Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(hP,hA,hP,&hPtAP);CHKERRQ(ierr); 674*613e5ff0Sstefano_zampini ierr = MatCreateFromParCSR(hPtAP,MATAIJ,PETSC_OWN_POINTER,C);CHKERRQ(ierr); 675*613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(A,&hA);CHKERRQ(ierr); 676*613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(P,&hP);CHKERRQ(ierr); 677*613e5ff0Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 678*613e5ff0Sstefano_zampini PetscFunctionReturn(0); 679*613e5ff0Sstefano_zampini } 680*613e5ff0Sstefano_zampini 681*613e5ff0Sstefano_zampini #undef __FUNCT__ 682*613e5ff0Sstefano_zampini #define __FUNCT__ "MatPtAP_AIJ_HYPRE" 683*613e5ff0Sstefano_zampini static PetscErrorCode MatPtAP_AIJ_HYPRE(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) 684*613e5ff0Sstefano_zampini { 685*613e5ff0Sstefano_zampini Mat_HYPRE *hP = (Mat_HYPRE*)P->data; 686*613e5ff0Sstefano_zampini hypre_ParCSRMatrix *hA = NULL,*Pparcsr,*ptapparcsr; 687*613e5ff0Sstefano_zampini HYPRE_Int type; 688*613e5ff0Sstefano_zampini MPI_Comm comm = PetscObjectComm((PetscObject)A); 689*613e5ff0Sstefano_zampini char mtype[256]; 690*613e5ff0Sstefano_zampini PetscErrorCode ierr; 691*613e5ff0Sstefano_zampini 692*613e5ff0Sstefano_zampini PetscFunctionBegin; 693*613e5ff0Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hP->ij,&type)); 694*613e5ff0Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(comm,PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 695*613e5ff0Sstefano_zampini if (scall == MAT_REUSE_MATRIX) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported MAT_REUSE_MATRIX"); 696*613e5ff0Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 697*613e5ff0Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hP->ij,(void**)&Pparcsr)); 698*613e5ff0Sstefano_zampini 699*613e5ff0Sstefano_zampini /* It looks like we don't need to have the diagonal entries 700*613e5ff0Sstefano_zampini ordered first in the rows of the diagonal part 701*613e5ff0Sstefano_zampini for boomerAMGBuildCoarseOperator to work */ 702*613e5ff0Sstefano_zampini ierr = MatAIJGetParCSR_Private(A,&hA);CHKERRQ(ierr); 703*613e5ff0Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(Pparcsr,hA,Pparcsr,&ptapparcsr);CHKERRQ(ierr); 704*613e5ff0Sstefano_zampini ierr = MatAIJRestoreParCSR_Private(A,&hA);CHKERRQ(ierr); 705225daaf8SStefano Zampini 706225daaf8SStefano Zampini /* create C depending on mtype */ 707225daaf8SStefano Zampini sprintf(mtype,MATAIJ); 708225daaf8SStefano Zampini ierr = PetscOptionsGetString(((PetscObject)A)->options,((PetscObject)A)->prefix,"-matptap_hypre_outtype",mtype,256,NULL);CHKERRQ(ierr); 709225daaf8SStefano Zampini ierr = MatCreateFromParCSR(ptapparcsr,mtype,PETSC_OWN_POINTER,C);CHKERRQ(ierr); 710*613e5ff0Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 711c1a070e6SStefano Zampini PetscFunctionReturn(0); 712c1a070e6SStefano Zampini } 713c1a070e6SStefano Zampini 714c1a070e6SStefano Zampini #undef __FUNCT__ 715cd8bc7baSStefano Zampini #define __FUNCT__ "MatPtAP_HYPRE_HYPRE" 716cd8bc7baSStefano Zampini static PetscErrorCode MatPtAP_HYPRE_HYPRE(Mat A,Mat P,MatReuse scall,PetscReal fill,Mat *C) 717cd8bc7baSStefano Zampini { 718cd8bc7baSStefano Zampini hypre_ParCSRMatrix *Aparcsr,*Pparcsr,*ptapparcsr; 719cd8bc7baSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data, *hP = (Mat_HYPRE*)P->data; 720*613e5ff0Sstefano_zampini HYPRE_Int type; 721cd8bc7baSStefano Zampini PetscErrorCode ierr; 722cd8bc7baSStefano Zampini 723cd8bc7baSStefano Zampini PetscFunctionBegin; 724cd8bc7baSStefano Zampini if (scall == MAT_REUSE_MATRIX) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Unsupported MAT_REUSE_MATRIX"); 725cd8bc7baSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 726cd8bc7baSStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 727cd8bc7baSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hP->ij,&type)); 728cd8bc7baSStefano Zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)P),PETSC_ERR_SUP,"Only HYPRE_PARCSR is supported"); 729*613e5ff0Sstefano_zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 730cd8bc7baSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&Aparcsr)); 731cd8bc7baSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hP->ij,(void**)&Pparcsr)); 732*613e5ff0Sstefano_zampini ierr = MatHYPRE_ParCSR_RAP(Pparcsr,Aparcsr,Pparcsr,&ptapparcsr);CHKERRQ(ierr); 733225daaf8SStefano Zampini ierr = MatCreateFromParCSR(ptapparcsr,MATHYPRE,PETSC_OWN_POINTER,C);CHKERRQ(ierr); 734*613e5ff0Sstefano_zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 735cd8bc7baSStefano Zampini PetscFunctionReturn(0); 736cd8bc7baSStefano Zampini } 737cd8bc7baSStefano Zampini 738cd8bc7baSStefano Zampini #undef __FUNCT__ 73963c07aadSStefano Zampini #define __FUNCT__ "MatMultTranspose_HYPRE" 740ea9daf28SStefano Zampini static PetscErrorCode MatMultTranspose_HYPRE(Mat A, Vec x, Vec y) 74163c07aadSStefano Zampini { 74263c07aadSStefano Zampini PetscErrorCode ierr; 74363c07aadSStefano Zampini 74463c07aadSStefano Zampini PetscFunctionBegin; 74563c07aadSStefano Zampini ierr = MatHYPRE_MultKernel_Private(A,x,y,PETSC_TRUE);CHKERRQ(ierr); 74663c07aadSStefano Zampini PetscFunctionReturn(0); 74763c07aadSStefano Zampini } 74863c07aadSStefano Zampini 74963c07aadSStefano Zampini #undef __FUNCT__ 75063c07aadSStefano Zampini #define __FUNCT__ "MatMult_HYPRE" 751ea9daf28SStefano Zampini static PetscErrorCode MatMult_HYPRE(Mat A, Vec x, Vec y) 75263c07aadSStefano Zampini { 75363c07aadSStefano Zampini PetscErrorCode ierr; 75463c07aadSStefano Zampini 75563c07aadSStefano Zampini PetscFunctionBegin; 75663c07aadSStefano Zampini ierr = MatHYPRE_MultKernel_Private(A,x,y,PETSC_FALSE);CHKERRQ(ierr); 75763c07aadSStefano Zampini PetscFunctionReturn(0); 75863c07aadSStefano Zampini } 75963c07aadSStefano Zampini 76063c07aadSStefano Zampini #undef __FUNCT__ 76163c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_MultKernel_Private" 762ea9daf28SStefano Zampini static PetscErrorCode MatHYPRE_MultKernel_Private(Mat A, Vec x, Vec y, PetscBool trans) 76363c07aadSStefano Zampini { 76463c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 76563c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 76663c07aadSStefano Zampini hypre_ParVector *hx,*hy; 76763c07aadSStefano Zampini PetscScalar *ax,*ay,*sax,*say; 76863c07aadSStefano Zampini PetscErrorCode ierr; 76963c07aadSStefano Zampini 77063c07aadSStefano Zampini PetscFunctionBegin; 77163c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)&parcsr)); 77263c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJVectorGetObject,(hA->x,(void**)&hx)); 77363c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJVectorGetObject,(hA->b,(void**)&hy)); 77463c07aadSStefano Zampini ierr = VecGetArrayRead(x,(const PetscScalar**)&ax);CHKERRQ(ierr); 77563c07aadSStefano Zampini ierr = VecGetArray(y,&ay);CHKERRQ(ierr); 77663c07aadSStefano Zampini if (trans) { 77758968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,ay,say); 77858968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,ax,sax); 77963c07aadSStefano Zampini hypre_ParCSRMatrixMatvecT(1.,parcsr,hy,0.,hx); 78058968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,say,ay); 78158968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,sax,ax); 78263c07aadSStefano Zampini } else { 78358968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,ax,sax); 78458968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,ay,say); 78563c07aadSStefano Zampini hypre_ParCSRMatrixMatvec(1.,parcsr,hx,0.,hy); 78658968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->x,sax,ax); 78758968eb6SStefano Zampini VecHYPRE_ParVectorReplacePointer(hA->b,say,ay); 78863c07aadSStefano Zampini } 78963c07aadSStefano Zampini ierr = VecRestoreArrayRead(x,(const PetscScalar**)&ax);CHKERRQ(ierr); 79063c07aadSStefano Zampini ierr = VecRestoreArray(y,&ay);CHKERRQ(ierr); 79163c07aadSStefano Zampini PetscFunctionReturn(0); 79263c07aadSStefano Zampini } 79363c07aadSStefano Zampini 79463c07aadSStefano Zampini #undef __FUNCT__ 79563c07aadSStefano Zampini #define __FUNCT__ "MatDestroy_HYPRE" 796ea9daf28SStefano Zampini static PetscErrorCode MatDestroy_HYPRE(Mat A) 79763c07aadSStefano Zampini { 79863c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 79963c07aadSStefano Zampini PetscErrorCode ierr; 80063c07aadSStefano Zampini 80163c07aadSStefano Zampini PetscFunctionBegin; 80263c07aadSStefano Zampini if (hA->x) PetscStackCallStandard(HYPRE_IJVectorDestroy,(hA->x)); 80363c07aadSStefano Zampini if (hA->b) PetscStackCallStandard(HYPRE_IJVectorDestroy,(hA->b)); 804978814f1SStefano Zampini if (hA->ij) { 805978814f1SStefano Zampini if (!hA->inner_free) hypre_IJMatrixObject(hA->ij) = NULL; 806978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixDestroy,(hA->ij)); 807978814f1SStefano Zampini } 80863c07aadSStefano Zampini if (hA->comm) { ierr = MPI_Comm_free(&hA->comm);CHKERRQ(ierr); } 80963c07aadSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_hypre_aij_C",NULL);CHKERRQ(ierr); 8102df22349SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_hypre_is_C",NULL);CHKERRQ(ierr); 811c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_seqaij_hypre_C",NULL);CHKERRQ(ierr); 812c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatPtAP_mpiaij_hypre_C",NULL);CHKERRQ(ierr); 813d975228cSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatHYPRESetPreallocation_C",NULL);CHKERRQ(ierr); 814dd9c0a25Sstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatHYPREGetParCSR_C",NULL);CHKERRQ(ierr); 81563c07aadSStefano Zampini ierr = PetscFree(A->data);CHKERRQ(ierr); 81663c07aadSStefano Zampini PetscFunctionReturn(0); 81763c07aadSStefano Zampini } 81863c07aadSStefano Zampini 81963c07aadSStefano Zampini #undef __FUNCT__ 82063c07aadSStefano Zampini #define __FUNCT__ "MatSetUp_HYPRE" 821ea9daf28SStefano Zampini static PetscErrorCode MatSetUp_HYPRE(Mat A) 82263c07aadSStefano Zampini { 8234ec6421dSstefano_zampini PetscErrorCode ierr; 8244ec6421dSstefano_zampini 8254ec6421dSstefano_zampini PetscFunctionBegin; 8264ec6421dSstefano_zampini ierr = MatHYPRESetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 8274ec6421dSstefano_zampini PetscFunctionReturn(0); 8284ec6421dSstefano_zampini } 8294ec6421dSstefano_zampini 8304ec6421dSstefano_zampini #undef __FUNCT__ 8314ec6421dSstefano_zampini #define __FUNCT__ "MatAssemblyEnd_HYPRE" 8324ec6421dSstefano_zampini static PetscErrorCode MatAssemblyEnd_HYPRE(Mat A, MatAssemblyType mode) 8334ec6421dSstefano_zampini { 83463c07aadSStefano Zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 83563c07aadSStefano Zampini Vec x,b; 83663c07aadSStefano Zampini PetscErrorCode ierr; 83763c07aadSStefano Zampini 83863c07aadSStefano Zampini PetscFunctionBegin; 8394ec6421dSstefano_zampini if (mode == MAT_FLUSH_ASSEMBLY) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"MAT_FLUSH_ASSEMBLY currently not supported with MATHYPRE"); 8404ec6421dSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixAssemble,(hA->ij)); 84163c07aadSStefano Zampini if (hA->x) PetscFunctionReturn(0); 84263c07aadSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 84363c07aadSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 84463c07aadSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),1,A->cmap->n,A->cmap->N,NULL,&x);CHKERRQ(ierr); 84563c07aadSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),1,A->rmap->n,A->rmap->N,NULL,&b);CHKERRQ(ierr); 84663c07aadSStefano Zampini ierr = VecHYPRE_IJVectorCreate(x,&hA->x);CHKERRQ(ierr); 84763c07aadSStefano Zampini ierr = VecHYPRE_IJVectorCreate(b,&hA->b);CHKERRQ(ierr); 84863c07aadSStefano Zampini ierr = VecDestroy(&x);CHKERRQ(ierr); 84963c07aadSStefano Zampini ierr = VecDestroy(&b);CHKERRQ(ierr); 85063c07aadSStefano Zampini PetscFunctionReturn(0); 85163c07aadSStefano Zampini } 85263c07aadSStefano Zampini 853d975228cSstefano_zampini #define MATHYPRE_SCRATCH 2048 854d975228cSstefano_zampini 855d975228cSstefano_zampini #undef __FUNCT__ 856d975228cSstefano_zampini #define __FUNCT__ "MatSetValues_HYPRE" 857d975228cSstefano_zampini PetscErrorCode MatSetValues_HYPRE(Mat A, PetscInt nr, const PetscInt rows[], PetscInt nc, const PetscInt cols[], const PetscScalar v[], InsertMode ins) 858d975228cSstefano_zampini { 859d975228cSstefano_zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 860d975228cSstefano_zampini PetscScalar *vals = (PetscScalar *)v; 861d975228cSstefano_zampini PetscScalar sscr[MATHYPRE_SCRATCH]; 8627d968826Sstefano_zampini HYPRE_Int cscr[2][MATHYPRE_SCRATCH]; 8637d968826Sstefano_zampini HYPRE_Int i,nzc; 864d975228cSstefano_zampini PetscErrorCode ierr; 865d975228cSstefano_zampini 866d975228cSstefano_zampini PetscFunctionBegin; 867d975228cSstefano_zampini for (i=0,nzc=0;i<nc;i++) { 868d975228cSstefano_zampini if (cols[i] >= 0) { 869d975228cSstefano_zampini cscr[0][nzc ] = cols[i]; 870d975228cSstefano_zampini cscr[1][nzc++] = i; 871d975228cSstefano_zampini } 872d975228cSstefano_zampini } 873d975228cSstefano_zampini if (!nzc) PetscFunctionReturn(0); 874d975228cSstefano_zampini 875d975228cSstefano_zampini if (ins == ADD_VALUES) { 876d975228cSstefano_zampini for (i=0;i<nr;i++) { 877d975228cSstefano_zampini if (rows[i] >= 0) { 878d975228cSstefano_zampini PetscInt j; 879d975228cSstefano_zampini for (j=0;j<nzc;j++) sscr[j] = vals[cscr[1][j]]; 8807d968826Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixAddToValues,(hA->ij,1,&nzc,(HYPRE_Int*)(rows+i),cscr[0],sscr)); 881d975228cSstefano_zampini } 882d975228cSstefano_zampini vals += nc; 883d975228cSstefano_zampini } 884d975228cSstefano_zampini } else { /* INSERT_VALUES */ 885d975228cSstefano_zampini #if defined(PETSC_USE_DEBUG) 886d975228cSstefano_zampini /* Insert values cannot be used to insert offproc entries */ 887d975228cSstefano_zampini PetscInt rst,ren; 888d975228cSstefano_zampini ierr = MatGetOwnershipRange(A,&rst,&ren);CHKERRQ(ierr); 889d975228cSstefano_zampini for (i=0;i<nr;i++) 890d975228cSstefano_zampini if (rows[i] >= 0 && (rows[i] < rst || rows[i] >= ren)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot use INSERT_VALUES for off-proc entries with MatHYPRE. Use ADD_VALUES instead"); 891d975228cSstefano_zampini #endif 892d975228cSstefano_zampini for (i=0;i<nr;i++) { 893d975228cSstefano_zampini if (rows[i] >= 0) { 894d975228cSstefano_zampini PetscInt j; 895d975228cSstefano_zampini for (j=0;j<nzc;j++) sscr[j] = vals[cscr[1][j]]; 8967d968826Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetValues,(hA->ij,1,&nzc,(HYPRE_Int*)(rows+i),cscr[0],sscr)); 897d975228cSstefano_zampini } 898d975228cSstefano_zampini vals += nc; 899d975228cSstefano_zampini } 900d975228cSstefano_zampini } 901d975228cSstefano_zampini PetscFunctionReturn(0); 902d975228cSstefano_zampini } 903d975228cSstefano_zampini 904d975228cSstefano_zampini #undef __FUNCT__ 905d975228cSstefano_zampini #define __FUNCT__ "MatHYPRESetPreallocation_HYPRE" 906d975228cSstefano_zampini static PetscErrorCode MatHYPRESetPreallocation_HYPRE(Mat A, PetscInt dnz, const PetscInt dnnz[], PetscInt onz, const PetscInt onnz[]) 907d975228cSstefano_zampini { 908d975228cSstefano_zampini Mat_HYPRE *hA = (Mat_HYPRE*)A->data; 9097d968826Sstefano_zampini HYPRE_Int *hdnnz,*honnz; 91006a29025Sstefano_zampini PetscInt i,rs,re,cs,ce,bs; 911d975228cSstefano_zampini PetscMPIInt size; 912d975228cSstefano_zampini PetscErrorCode ierr; 913d975228cSstefano_zampini 914d975228cSstefano_zampini PetscFunctionBegin; 91506a29025Sstefano_zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 916d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 917d975228cSstefano_zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 918d975228cSstefano_zampini rs = A->rmap->rstart; 919d975228cSstefano_zampini re = A->rmap->rend; 920d975228cSstefano_zampini cs = A->cmap->rstart; 921d975228cSstefano_zampini ce = A->cmap->rend; 922d975228cSstefano_zampini if (!hA->ij) { 923d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rs,re-1,cs,ce-1,&hA->ij)); 924d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 925d975228cSstefano_zampini } else { 9267d968826Sstefano_zampini HYPRE_Int hrs,hre,hcs,hce; 927d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetLocalRange,(hA->ij,&hrs,&hre,&hcs,&hce)); 928d975228cSstefano_zampini if (hre-hrs+1 != re -rs) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent local rows: IJMatrix [%D,%D), PETSc [%D,%d)",hrs,hre+1,rs,re); 929d975228cSstefano_zampini if (hce-hcs+1 != ce -cs) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent local cols: IJMatrix [%D,%D), PETSc [%D,%d)",hcs,hce+1,cs,ce); 930d975228cSstefano_zampini } 931d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(hA->ij)); 932d975228cSstefano_zampini 93306a29025Sstefano_zampini if (dnz == PETSC_DEFAULT || dnz == PETSC_DECIDE) dnz = 10*bs; 93406a29025Sstefano_zampini if (onz == PETSC_DEFAULT || onz == PETSC_DECIDE) onz = 10*bs; 93506a29025Sstefano_zampini 936d975228cSstefano_zampini if (!dnnz) { 937d975228cSstefano_zampini ierr = PetscMalloc1(A->rmap->n,&hdnnz);CHKERRQ(ierr); 938d975228cSstefano_zampini for (i=0;i<A->rmap->n;i++) hdnnz[i] = dnz; 939d975228cSstefano_zampini } else { 9407d968826Sstefano_zampini hdnnz = (HYPRE_Int*)dnnz; 941d975228cSstefano_zampini } 942d975228cSstefano_zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 943d975228cSstefano_zampini if (size > 1) { 944d975228cSstefano_zampini if (!onnz) { 945d975228cSstefano_zampini ierr = PetscMalloc1(A->rmap->n,&honnz);CHKERRQ(ierr); 946d975228cSstefano_zampini for (i=0;i<A->rmap->n;i++) honnz[i] = onz; 947d975228cSstefano_zampini } else { 9487d968826Sstefano_zampini honnz = (HYPRE_Int*)onnz; 949d975228cSstefano_zampini } 950d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(hA->ij,hdnnz,honnz)); 951d975228cSstefano_zampini } else { 952d975228cSstefano_zampini honnz = NULL; 953d975228cSstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixSetRowSizes,(hA->ij,hdnnz)); 954d975228cSstefano_zampini } 955d975228cSstefano_zampini if (!dnnz) { 956d975228cSstefano_zampini ierr = PetscFree(hdnnz);CHKERRQ(ierr); 957d975228cSstefano_zampini } 958d975228cSstefano_zampini if (!onnz && honnz) { 959d975228cSstefano_zampini ierr = PetscFree(honnz);CHKERRQ(ierr); 960d975228cSstefano_zampini } 96106a29025Sstefano_zampini A->preallocated = PETSC_TRUE; 962d975228cSstefano_zampini 963d975228cSstefano_zampini /* SetDiagOffdSizes sets hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0 */ 964d975228cSstefano_zampini { 965d975228cSstefano_zampini hypre_AuxParCSRMatrix *aux_matrix; 966d975228cSstefano_zampini aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(hA->ij); 967d975228cSstefano_zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 1; 968d975228cSstefano_zampini } 969d975228cSstefano_zampini PetscFunctionReturn(0); 970d975228cSstefano_zampini } 971d975228cSstefano_zampini 972d975228cSstefano_zampini /*@C 973d975228cSstefano_zampini MatHYPRESetPreallocation - Preallocates memory for a sparse parallel matrix in HYPRE IJ format 974d975228cSstefano_zampini 975d975228cSstefano_zampini Collective on Mat 976d975228cSstefano_zampini 977d975228cSstefano_zampini Input Parameters: 978d975228cSstefano_zampini + A - the matrix 979d975228cSstefano_zampini . dnz - number of nonzeros per row in DIAGONAL portion of local submatrix 980d975228cSstefano_zampini (same value is used for all local rows) 981d975228cSstefano_zampini . dnnz - array containing the number of nonzeros in the various rows of the 982d975228cSstefano_zampini DIAGONAL portion of the local submatrix (possibly different for each row) 983d975228cSstefano_zampini or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 984d975228cSstefano_zampini The size of this array is equal to the number of local rows, i.e 'm'. 985d975228cSstefano_zampini For matrices that will be factored, you must leave room for (and set) 986d975228cSstefano_zampini the diagonal entry even if it is zero. 987d975228cSstefano_zampini . onz - number of nonzeros per row in the OFF-DIAGONAL portion of local 988d975228cSstefano_zampini submatrix (same value is used for all local rows). 989d975228cSstefano_zampini - onnz - array containing the number of nonzeros in the various rows of the 990d975228cSstefano_zampini OFF-DIAGONAL portion of the local submatrix (possibly different for 991d975228cSstefano_zampini each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 992d975228cSstefano_zampini structure. The size of this array is equal to the number 993d975228cSstefano_zampini of local rows, i.e 'm'. 994d975228cSstefano_zampini 995d975228cSstefano_zampini Notes: If the *nnz parameter is given then the *nz parameter is ignored; for sequential matrices, onz and onnz are ignored. 996d975228cSstefano_zampini 997d975228cSstefano_zampini Level: intermediate 998d975228cSstefano_zampini 999d975228cSstefano_zampini .keywords: matrix, aij, compressed row, sparse, parallel 1000d975228cSstefano_zampini 1001d975228cSstefano_zampini .seealso: MatCreate(), MatMPIAIJSetPreallocation, MATHYPRE 1002d975228cSstefano_zampini @*/ 1003d975228cSstefano_zampini #undef __FUNCT__ 1004d975228cSstefano_zampini #define __FUNCT__ "MatHYPRESetPreallocation" 1005d975228cSstefano_zampini PetscErrorCode MatHYPRESetPreallocation(Mat A, PetscInt dnz, const PetscInt dnnz[], PetscInt onz, const PetscInt onnz[]) 1006d975228cSstefano_zampini { 1007d975228cSstefano_zampini PetscErrorCode ierr; 1008d975228cSstefano_zampini 1009d975228cSstefano_zampini PetscFunctionBegin; 1010d975228cSstefano_zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1011d975228cSstefano_zampini PetscValidType(A,1); 1012d975228cSstefano_zampini ierr = PetscTryMethod(A,"MatHYPRESetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(A,dnz,dnnz,onz,onnz));CHKERRQ(ierr); 1013d975228cSstefano_zampini PetscFunctionReturn(0); 1014d975228cSstefano_zampini } 1015d975228cSstefano_zampini 1016225daaf8SStefano Zampini /* 1017225daaf8SStefano Zampini MatCreateFromParCSR - Creates a matrix from a hypre_ParCSRMatrix 1018225daaf8SStefano Zampini 1019225daaf8SStefano Zampini Collective 1020225daaf8SStefano Zampini 1021225daaf8SStefano Zampini Input Parameters: 1022225daaf8SStefano Zampini + vparcsr - the pointer to the hypre_ParCSRMatrix 1023bb4689ddSStefano Zampini . mtype - matrix type to be created. Currently MATAIJ, MATIS and MATHYPRE are supported. 1024225daaf8SStefano Zampini - copymode - PETSc copying options 1025225daaf8SStefano Zampini 1026225daaf8SStefano Zampini Output Parameter: 1027225daaf8SStefano Zampini . A - the matrix 1028225daaf8SStefano Zampini 1029225daaf8SStefano Zampini Level: intermediate 1030225daaf8SStefano Zampini 1031225daaf8SStefano Zampini .seealso: MatHYPRE, PetscCopyMode 1032225daaf8SStefano Zampini */ 1033978814f1SStefano Zampini #undef __FUNCT__ 1034225daaf8SStefano Zampini #define __FUNCT__ "MatCreateFromParCSR" 1035dd9c0a25Sstefano_zampini PETSC_EXTERN PetscErrorCode MatCreateFromParCSR(hypre_ParCSRMatrix *vparcsr, MatType mtype, PetscCopyMode copymode, Mat* A) 1036978814f1SStefano Zampini { 1037225daaf8SStefano Zampini Mat T; 1038978814f1SStefano Zampini Mat_HYPRE *hA; 103963c07aadSStefano Zampini hypre_ParCSRMatrix *parcsr; 1040978814f1SStefano Zampini MPI_Comm comm; 1041978814f1SStefano Zampini PetscInt rstart,rend,cstart,cend,M,N; 1042bb4689ddSStefano Zampini PetscBool isseqaij,ismpiaij,isaij,ishyp,isis; 1043978814f1SStefano Zampini PetscErrorCode ierr; 1044978814f1SStefano Zampini 1045978814f1SStefano Zampini PetscFunctionBegin; 1046978814f1SStefano Zampini parcsr = (hypre_ParCSRMatrix *)vparcsr; 1047978814f1SStefano Zampini comm = hypre_ParCSRMatrixComm(parcsr); 1048225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 1049225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATMPIAIJ,&ismpiaij);CHKERRQ(ierr); 1050225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATAIJ,&isaij);CHKERRQ(ierr); 1051225daaf8SStefano Zampini ierr = PetscStrcmp(mtype,MATHYPRE,&ishyp);CHKERRQ(ierr); 10528cfe8d00SStefano Zampini ierr = PetscStrcmp(mtype,MATIS,&isis);CHKERRQ(ierr); 1053225daaf8SStefano Zampini isaij = (PetscBool)(isseqaij || ismpiaij || isaij); 1054bb4689ddSStefano Zampini if (!isaij && !ishyp && !isis) SETERRQ6(comm,PETSC_ERR_SUP,"Unsupported MatType %s! Supported types are %s, %s, %s, %s, and %s",mtype,MATAIJ,MATSEQAIJ,MATMPIAIJ,MATIS,MATHYPRE); 1055225daaf8SStefano Zampini if (ishyp && copymode == PETSC_COPY_VALUES) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported copymode PETSC_COPY_VALUES"); 1056978814f1SStefano Zampini 1057978814f1SStefano Zampini /* access ParCSRMatrix */ 1058978814f1SStefano Zampini rstart = hypre_ParCSRMatrixFirstRowIndex(parcsr); 1059978814f1SStefano Zampini rend = hypre_ParCSRMatrixLastRowIndex(parcsr); 1060978814f1SStefano Zampini cstart = hypre_ParCSRMatrixFirstColDiag(parcsr); 1061978814f1SStefano Zampini cend = hypre_ParCSRMatrixLastColDiag(parcsr); 1062978814f1SStefano Zampini M = hypre_ParCSRMatrixGlobalNumRows(parcsr); 1063978814f1SStefano Zampini N = hypre_ParCSRMatrixGlobalNumCols(parcsr); 1064978814f1SStefano Zampini 1065fa92c42cSstefano_zampini /* fix for empty local rows/columns */ 1066fa92c42cSstefano_zampini if (rend < rstart) rend = rstart; 1067fa92c42cSstefano_zampini if (cend < cstart) cend = cstart; 1068fa92c42cSstefano_zampini 1069978814f1SStefano Zampini /* create PETSc matrix with MatHYPRE */ 1070225daaf8SStefano Zampini ierr = MatCreate(comm,&T);CHKERRQ(ierr); 1071225daaf8SStefano Zampini ierr = MatSetSizes(T,rend-rstart+1,cend-cstart+1,M,N);CHKERRQ(ierr); 1072225daaf8SStefano Zampini ierr = MatSetType(T,MATHYPRE);CHKERRQ(ierr); 1073225daaf8SStefano Zampini hA = (Mat_HYPRE*)(T->data); 1074978814f1SStefano Zampini 1075978814f1SStefano Zampini /* create HYPRE_IJMatrix */ 1076978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(hA->comm,rstart,rend-1,cstart,cend-1,&hA->ij)); 1077978814f1SStefano Zampini 1078978814f1SStefano Zampini /* set ParCSR object */ 1079978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(hA->ij,HYPRE_PARCSR)); 1080978814f1SStefano Zampini hypre_IJMatrixObject(hA->ij) = parcsr; 10814ec6421dSstefano_zampini T->preallocated = PETSC_TRUE; 1082978814f1SStefano Zampini 1083978814f1SStefano Zampini /* set assembled flag */ 1084978814f1SStefano Zampini hypre_IJMatrixAssembleFlag(hA->ij) = 1; 1085978814f1SStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(hA->ij)); 1086225daaf8SStefano Zampini if (ishyp) { 10876d2a658fSstefano_zampini PetscMPIInt myid = 0; 10886d2a658fSstefano_zampini 10896d2a658fSstefano_zampini /* make sure we always have row_starts and col_starts available */ 10906d2a658fSstefano_zampini if (HYPRE_AssumedPartitionCheck()) { 10916d2a658fSstefano_zampini ierr = MPI_Comm_rank(comm,&myid);CHKERRQ(ierr); 10926d2a658fSstefano_zampini } 10936d2a658fSstefano_zampini if (!hypre_ParCSRMatrixOwnsColStarts(parcsr)) { 10946d2a658fSstefano_zampini PetscLayout map; 10956d2a658fSstefano_zampini 10966d2a658fSstefano_zampini ierr = MatGetLayouts(T,NULL,&map);CHKERRQ(ierr); 10976d2a658fSstefano_zampini ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 10986d2a658fSstefano_zampini hypre_ParCSRMatrixColStarts(parcsr) = map->range + myid; 10996d2a658fSstefano_zampini } 11006d2a658fSstefano_zampini if (!hypre_ParCSRMatrixOwnsRowStarts(parcsr)) { 11016d2a658fSstefano_zampini PetscLayout map; 11026d2a658fSstefano_zampini 11036d2a658fSstefano_zampini ierr = MatGetLayouts(T,&map,NULL);CHKERRQ(ierr); 11046d2a658fSstefano_zampini ierr = PetscLayoutSetUp(map);CHKERRQ(ierr); 11056d2a658fSstefano_zampini hypre_ParCSRMatrixRowStarts(parcsr) = map->range + myid; 11066d2a658fSstefano_zampini } 1107978814f1SStefano Zampini /* prevent from freeing the pointer */ 1108978814f1SStefano Zampini if (copymode == PETSC_USE_POINTER) hA->inner_free = PETSC_FALSE; 1109225daaf8SStefano Zampini *A = T; 1110978814f1SStefano Zampini ierr = MatAssemblyBegin(*A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1111978814f1SStefano Zampini ierr = MatAssemblyEnd(*A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1112bb4689ddSStefano Zampini } else if (isaij) { 1113bb4689ddSStefano Zampini if (copymode != PETSC_OWN_POINTER) { 1114225daaf8SStefano Zampini /* prevent from freeing the pointer */ 1115225daaf8SStefano Zampini hA->inner_free = PETSC_FALSE; 1116225daaf8SStefano Zampini ierr = MatConvert_HYPRE_AIJ(T,MATAIJ,MAT_INITIAL_MATRIX,A);CHKERRQ(ierr); 1117225daaf8SStefano Zampini ierr = MatDestroy(&T);CHKERRQ(ierr); 1118225daaf8SStefano Zampini } else { /* AIJ return type with PETSC_OWN_POINTER */ 1119225daaf8SStefano Zampini ierr = MatConvert_HYPRE_AIJ(T,MATAIJ,MAT_INPLACE_MATRIX,&T);CHKERRQ(ierr); 1120225daaf8SStefano Zampini *A = T; 1121225daaf8SStefano Zampini } 1122bb4689ddSStefano Zampini } else if (isis) { 11238cfe8d00SStefano Zampini ierr = MatConvert_HYPRE_IS(T,MATIS,MAT_INITIAL_MATRIX,A);CHKERRQ(ierr); 11248cfe8d00SStefano Zampini if (copymode != PETSC_OWN_POINTER) hA->inner_free = PETSC_FALSE; 1125bb4689ddSStefano Zampini ierr = MatDestroy(&T);CHKERRQ(ierr); 1126bb4689ddSStefano Zampini } 1127978814f1SStefano Zampini PetscFunctionReturn(0); 1128978814f1SStefano Zampini } 1129978814f1SStefano Zampini 113063c07aadSStefano Zampini #undef __FUNCT__ 1131dd9c0a25Sstefano_zampini #define __FUNCT__ "MatHYPREGetParCSR_HYPRE" 1132dd9c0a25Sstefano_zampini PetscErrorCode MatHYPREGetParCSR_HYPRE(Mat A, hypre_ParCSRMatrix **parcsr) 1133dd9c0a25Sstefano_zampini { 1134dd9c0a25Sstefano_zampini Mat_HYPRE* hA = (Mat_HYPRE*)A->data; 1135dd9c0a25Sstefano_zampini HYPRE_Int type; 1136dd9c0a25Sstefano_zampini PetscErrorCode ierr; 1137dd9c0a25Sstefano_zampini 1138dd9c0a25Sstefano_zampini PetscFunctionBegin; 1139dd9c0a25Sstefano_zampini if (!hA->ij) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"HYPRE_IJMatrix not present"); 1140dd9c0a25Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObjectType,(hA->ij,&type)); 1141dd9c0a25Sstefano_zampini if (type != HYPRE_PARCSR) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"HYPRE_IJMatrix is not of type HYPRE_PARCSR"); 1142dd9c0a25Sstefano_zampini PetscStackCallStandard(HYPRE_IJMatrixGetObject,(hA->ij,(void**)parcsr)); 1143dd9c0a25Sstefano_zampini PetscFunctionReturn(0); 1144dd9c0a25Sstefano_zampini } 1145dd9c0a25Sstefano_zampini 1146dd9c0a25Sstefano_zampini /* 1147dd9c0a25Sstefano_zampini MatHYPREGetParCSR - Gets the pointer to the ParCSR matrix 1148dd9c0a25Sstefano_zampini 1149dd9c0a25Sstefano_zampini Not collective 1150dd9c0a25Sstefano_zampini 1151dd9c0a25Sstefano_zampini Input Parameters: 1152dd9c0a25Sstefano_zampini + A - the MATHYPRE object 1153dd9c0a25Sstefano_zampini 1154dd9c0a25Sstefano_zampini Output Parameter: 1155dd9c0a25Sstefano_zampini . parcsr - the pointer to the hypre_ParCSRMatrix 1156dd9c0a25Sstefano_zampini 1157dd9c0a25Sstefano_zampini Level: intermediate 1158dd9c0a25Sstefano_zampini 1159dd9c0a25Sstefano_zampini .seealso: MatHYPRE, PetscCopyMode 1160dd9c0a25Sstefano_zampini */ 1161dd9c0a25Sstefano_zampini #undef __FUNCT__ 1162dd9c0a25Sstefano_zampini #define __FUNCT__ "MatHYPREGetParCSR" 1163dd9c0a25Sstefano_zampini PetscErrorCode MatHYPREGetParCSR(Mat A, hypre_ParCSRMatrix **parcsr) 1164dd9c0a25Sstefano_zampini { 1165dd9c0a25Sstefano_zampini PetscErrorCode ierr; 1166dd9c0a25Sstefano_zampini 1167dd9c0a25Sstefano_zampini PetscFunctionBegin; 1168dd9c0a25Sstefano_zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1169dd9c0a25Sstefano_zampini PetscValidType(A,1); 1170dd9c0a25Sstefano_zampini ierr = PetscUseMethod(A,"MatHYPREGetParCSR_C",(Mat,hypre_ParCSRMatrix**),(A,parcsr));CHKERRQ(ierr); 1171dd9c0a25Sstefano_zampini PetscFunctionReturn(0); 1172dd9c0a25Sstefano_zampini } 1173dd9c0a25Sstefano_zampini 1174dd9c0a25Sstefano_zampini #undef __FUNCT__ 117563c07aadSStefano Zampini #define __FUNCT__ "MatCreate_HYPRE" 117663c07aadSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_HYPRE(Mat B) 117763c07aadSStefano Zampini { 117863c07aadSStefano Zampini Mat_HYPRE *hB; 117963c07aadSStefano Zampini PetscErrorCode ierr; 118063c07aadSStefano Zampini 118163c07aadSStefano Zampini PetscFunctionBegin; 118263c07aadSStefano Zampini ierr = PetscNewLog(B,&hB);CHKERRQ(ierr); 1183978814f1SStefano Zampini hB->inner_free = PETSC_TRUE; 1184978814f1SStefano Zampini 118563c07aadSStefano Zampini B->data = (void*)hB; 118663c07aadSStefano Zampini B->rmap->bs = 1; 118763c07aadSStefano Zampini B->assembled = PETSC_FALSE; 118863c07aadSStefano Zampini 118963c07aadSStefano Zampini B->ops->mult = MatMult_HYPRE; 119063c07aadSStefano Zampini B->ops->multtranspose = MatMultTranspose_HYPRE; 119163c07aadSStefano Zampini B->ops->setup = MatSetUp_HYPRE; 119263c07aadSStefano Zampini B->ops->destroy = MatDestroy_HYPRE; 119363c07aadSStefano Zampini B->ops->assemblyend = MatAssemblyEnd_HYPRE; 1194cd8bc7baSStefano Zampini B->ops->ptap = MatPtAP_HYPRE_HYPRE; 1195d975228cSstefano_zampini B->ops->setvalues = MatSetValues_HYPRE; 119663c07aadSStefano Zampini 119763c07aadSStefano Zampini ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)B),&hB->comm);CHKERRQ(ierr); 119863c07aadSStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATHYPRE);CHKERRQ(ierr); 119963c07aadSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_hypre_aij_C",MatConvert_HYPRE_AIJ);CHKERRQ(ierr); 12002df22349SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_hypre_is_C",MatConvert_HYPRE_IS);CHKERRQ(ierr); 1201c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaij_hypre_C",MatPtAP_AIJ_HYPRE);CHKERRQ(ierr); 1202c1a070e6SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_mpiaij_hypre_C",MatPtAP_AIJ_HYPRE);CHKERRQ(ierr); 1203d975228cSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatHYPRESetPreallocation_C",MatHYPRESetPreallocation_HYPRE);CHKERRQ(ierr); 1204dd9c0a25Sstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatHYPREGetParCSR_C",MatHYPREGetParCSR_HYPRE);CHKERRQ(ierr); 120563c07aadSStefano Zampini PetscFunctionReturn(0); 120663c07aadSStefano Zampini } 120763c07aadSStefano Zampini 1208225daaf8SStefano Zampini #undef __FUNCT__ 1209225daaf8SStefano Zampini #define __FUNCT__ "hypre_array_destroy" 1210225daaf8SStefano Zampini static PetscErrorCode hypre_array_destroy(void *ptr) 1211225daaf8SStefano Zampini { 1212225daaf8SStefano Zampini PetscFunctionBegin; 1213225daaf8SStefano Zampini hypre_TFree(ptr); 1214225daaf8SStefano Zampini PetscFunctionReturn(0); 1215225daaf8SStefano Zampini } 1216225daaf8SStefano Zampini 121763c07aadSStefano Zampini #if 0 121863c07aadSStefano Zampini /* 121963c07aadSStefano Zampini Does NOT copy the data over, instead uses DIRECTLY the pointers from the PETSc MPIAIJ format 122063c07aadSStefano Zampini 122163c07aadSStefano Zampini This is UNFINISHED and does NOT work! The problem is that hypre puts the diagonal entry first 122263c07aadSStefano Zampini which will corrupt the PETSc data structure if we did this. Need a work around to this problem. 122363c07aadSStefano Zampini */ 122463c07aadSStefano Zampini #include <_hypre_IJ_mv.h> 122563c07aadSStefano Zampini #include <HYPRE_IJ_mv.h> 122663c07aadSStefano Zampini 122763c07aadSStefano Zampini #undef __FUNCT__ 122863c07aadSStefano Zampini #define __FUNCT__ "MatHYPRE_IJMatrixLink" 122963c07aadSStefano Zampini PetscErrorCode MatHYPRE_IJMatrixLink(Mat A, HYPRE_IJMatrix *ij) 123063c07aadSStefano Zampini { 123163c07aadSStefano Zampini PetscErrorCode ierr; 123263c07aadSStefano Zampini PetscInt rstart,rend,cstart,cend; 123363c07aadSStefano Zampini PetscBool flg; 123463c07aadSStefano Zampini hypre_AuxParCSRMatrix *aux_matrix; 123563c07aadSStefano Zampini 123663c07aadSStefano Zampini PetscFunctionBegin; 123763c07aadSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 123863c07aadSStefano Zampini PetscValidType(A,1); 123963c07aadSStefano Zampini PetscValidPointer(ij,2); 124063c07aadSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);CHKERRQ(ierr); 124163c07aadSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Can only use with PETSc MPIAIJ matrices"); 124263c07aadSStefano Zampini ierr = MatSetUp(A);CHKERRQ(ierr); 124363c07aadSStefano Zampini 124463c07aadSStefano Zampini ierr = PetscLogEventBegin(MAT_Convert,A,0,0,0);CHKERRQ(ierr); 124563c07aadSStefano Zampini rstart = A->rmap->rstart; 124663c07aadSStefano Zampini rend = A->rmap->rend; 124763c07aadSStefano Zampini cstart = A->cmap->rstart; 124863c07aadSStefano Zampini cend = A->cmap->rend; 124963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixCreate,(PetscObjectComm((PetscObject)A),rstart,rend-1,cstart,cend-1,ij)); 125063c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(*ij,HYPRE_PARCSR)); 125163c07aadSStefano Zampini 125263c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixInitialize,(*ij)); 125363c07aadSStefano Zampini PetscStackCall("hypre_IJMatrixTranslator",aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(*ij)); 125463c07aadSStefano Zampini 125563c07aadSStefano Zampini hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0; 125663c07aadSStefano Zampini 125763c07aadSStefano Zampini /* this is the Hack part where we monkey directly with the hypre datastructures */ 125863c07aadSStefano Zampini 125963c07aadSStefano Zampini PetscStackCallStandard(HYPRE_IJMatrixAssemble,(*ij)); 126063c07aadSStefano Zampini ierr = PetscLogEventEnd(MAT_Convert,A,0,0,0);CHKERRQ(ierr); 126163c07aadSStefano Zampini PetscFunctionReturn(0); 126263c07aadSStefano Zampini } 126363c07aadSStefano Zampini #endif 1264