xref: /petsc/src/mat/impls/is/matis.c (revision 2b40b63f2d83c74feb0a2167f386cf143c8f6e2d)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3b4319ba4SBarry Smith /*
4b4319ba4SBarry Smith     Creates a matrix class for using the Neumann-Neumann type preconditioners.
5b4319ba4SBarry Smith    This stores the matrices in globally unassembled form. Each processor
6b4319ba4SBarry Smith    assembles only its local Neumann problem and the parallel matrix vector
7b4319ba4SBarry Smith    product is handled "implicitly".
8b4319ba4SBarry Smith 
9b4319ba4SBarry Smith      We provide:
10b4319ba4SBarry Smith          MatMult()
11b4319ba4SBarry Smith 
12b4319ba4SBarry Smith     Currently this allows for only one subdomain per processor.
13b4319ba4SBarry Smith 
14b4319ba4SBarry Smith */
15b4319ba4SBarry Smith 
167c4f633dSBarry Smith #include "../src/mat/impls/is/matis.h"      /*I "petscmat.h" I*/
17b4319ba4SBarry Smith 
18b4319ba4SBarry Smith #undef __FUNCT__
19b4319ba4SBarry Smith #define __FUNCT__ "MatDestroy_IS"
20dfbe8321SBarry Smith PetscErrorCode MatDestroy_IS(Mat A)
21b4319ba4SBarry Smith {
22dfbe8321SBarry Smith   PetscErrorCode ierr;
23b4319ba4SBarry Smith   Mat_IS         *b = (Mat_IS*)A->data;
24b4319ba4SBarry Smith 
25b4319ba4SBarry Smith   PetscFunctionBegin;
26b4319ba4SBarry Smith   if (b->A) {
27b4319ba4SBarry Smith     ierr = MatDestroy(b->A);CHKERRQ(ierr);
28b4319ba4SBarry Smith   }
29b4319ba4SBarry Smith   if (b->ctx) {
30b4319ba4SBarry Smith     ierr = VecScatterDestroy(b->ctx);CHKERRQ(ierr);
31b4319ba4SBarry Smith   }
32b4319ba4SBarry Smith   if (b->x) {
33b4319ba4SBarry Smith     ierr = VecDestroy(b->x);CHKERRQ(ierr);
34b4319ba4SBarry Smith   }
35b4319ba4SBarry Smith   if (b->y) {
36b4319ba4SBarry Smith     ierr = VecDestroy(b->y);CHKERRQ(ierr);
37b4319ba4SBarry Smith   }
38b4319ba4SBarry Smith   if (b->mapping) {
39b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(b->mapping);CHKERRQ(ierr);
40b4319ba4SBarry Smith   }
41b4319ba4SBarry Smith   ierr = PetscFree(b);CHKERRQ(ierr);
42dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
43901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatISGetLocalMat_C","",PETSC_NULL);CHKERRQ(ierr);
44b4319ba4SBarry Smith   PetscFunctionReturn(0);
45b4319ba4SBarry Smith }
46b4319ba4SBarry Smith 
47b4319ba4SBarry Smith #undef __FUNCT__
48b4319ba4SBarry Smith #define __FUNCT__ "MatMult_IS"
49dfbe8321SBarry Smith PetscErrorCode MatMult_IS(Mat A,Vec x,Vec y)
50b4319ba4SBarry Smith {
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
53b4319ba4SBarry Smith   PetscScalar    zero = 0.0;
54b4319ba4SBarry Smith 
55b4319ba4SBarry Smith   PetscFunctionBegin;
56b4319ba4SBarry Smith   /*  scatter the global vector x into the local work vector */
57ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
58ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
59b4319ba4SBarry Smith 
60b4319ba4SBarry Smith   /* multiply the local matrix */
61b4319ba4SBarry Smith   ierr = MatMult(is->A,is->x,is->y);CHKERRQ(ierr);
62b4319ba4SBarry Smith 
63b4319ba4SBarry Smith   /* scatter product back into global memory */
642dcb1b2aSMatthew Knepley   ierr = VecSet(y,zero);CHKERRQ(ierr);
65ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
66ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
67b4319ba4SBarry Smith 
68b4319ba4SBarry Smith   PetscFunctionReturn(0);
69b4319ba4SBarry Smith }
70b4319ba4SBarry Smith 
71b4319ba4SBarry Smith #undef __FUNCT__
722e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultAdd_IS"
732e74eeadSLisandro Dalcin static PetscErrorCode MatMultAdd_IS(Mat A,Vec v1,Vec v2,Vec v3)
742e74eeadSLisandro Dalcin {
752e74eeadSLisandro Dalcin   PetscErrorCode ierr;
762e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
772e74eeadSLisandro Dalcin 
782e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  v3 = v2 + A * v1.*/
792e74eeadSLisandro Dalcin   /*  scatter the global vector v1 into the local work vector */
80ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
81ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
82ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
83ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
842e74eeadSLisandro Dalcin 
852e74eeadSLisandro Dalcin   /* multiply the local matrix */
862e74eeadSLisandro Dalcin   ierr = MatMultAdd(is->A,is->x,is->y,is->y);CHKERRQ(ierr);
872e74eeadSLisandro Dalcin 
882e74eeadSLisandro Dalcin   /* scatter result back into global vector */
892e74eeadSLisandro Dalcin   ierr = VecSet(v3,0);CHKERRQ(ierr);
90ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
91ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
922e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
932e74eeadSLisandro Dalcin }
942e74eeadSLisandro Dalcin 
952e74eeadSLisandro Dalcin #undef __FUNCT__
962e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTranspose_IS"
972e74eeadSLisandro Dalcin PetscErrorCode MatMultTranspose_IS(Mat A,Vec x,Vec y)
982e74eeadSLisandro Dalcin {
992e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
1002e74eeadSLisandro Dalcin   PetscErrorCode ierr;
1012e74eeadSLisandro Dalcin 
1022e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  y = A' * x */
1032e74eeadSLisandro Dalcin   /*  scatter the global vector x into the local work vector */
104ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
105ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,x,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1062e74eeadSLisandro Dalcin 
1072e74eeadSLisandro Dalcin   /* multiply the local matrix */
1082e74eeadSLisandro Dalcin   ierr = MatMultTranspose(is->A,is->x,is->y);CHKERRQ(ierr);
1092e74eeadSLisandro Dalcin 
1102e74eeadSLisandro Dalcin   /* scatter product back into global vector */
1112e74eeadSLisandro Dalcin   ierr = VecSet(y,0);CHKERRQ(ierr);
112ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
113ca9f406cSSatish Balay   ierr = VecScatterEnd(is->ctx,is->y,y,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1142e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
1152e74eeadSLisandro Dalcin }
1162e74eeadSLisandro Dalcin 
1172e74eeadSLisandro Dalcin #undef __FUNCT__
1182e74eeadSLisandro Dalcin #define __FUNCT__ "MatMultTransposeAdd_IS"
1192e74eeadSLisandro Dalcin PetscErrorCode MatMultTransposeAdd_IS(Mat A,Vec v1,Vec v2,Vec v3)
1202e74eeadSLisandro Dalcin {
1212e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
1222e74eeadSLisandro Dalcin   PetscErrorCode ierr;
1232e74eeadSLisandro Dalcin 
1242e74eeadSLisandro Dalcin   PetscFunctionBegin; /*  v3 = v2 + A' * v1.*/
1252e74eeadSLisandro Dalcin   /*  scatter the global vectors v1 and v2  into the local work vectors */
126ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
127ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,v1,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
128ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
129ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,v2,is->y,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1302e74eeadSLisandro Dalcin 
1312e74eeadSLisandro Dalcin   /* multiply the local matrix */
1322e74eeadSLisandro Dalcin   ierr = MatMultTransposeAdd(is->A,is->x,is->y,is->y);CHKERRQ(ierr);
1332e74eeadSLisandro Dalcin 
1342e74eeadSLisandro Dalcin   /* scatter result back into global vector */
1352e74eeadSLisandro Dalcin   ierr = VecSet(v3,0);CHKERRQ(ierr);
136ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
137ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,is->y,v3,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1382e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
1392e74eeadSLisandro Dalcin }
1402e74eeadSLisandro Dalcin 
1412e74eeadSLisandro Dalcin #undef __FUNCT__
142b4319ba4SBarry Smith #define __FUNCT__ "MatView_IS"
143dfbe8321SBarry Smith PetscErrorCode MatView_IS(Mat A,PetscViewer viewer)
144b4319ba4SBarry Smith {
145b4319ba4SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
146dfbe8321SBarry Smith   PetscErrorCode ierr;
147b4319ba4SBarry Smith   PetscViewer    sviewer;
148b4319ba4SBarry Smith 
149b4319ba4SBarry Smith   PetscFunctionBegin;
150b4319ba4SBarry Smith   ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
151b4319ba4SBarry Smith   ierr = MatView(a->A,sviewer);CHKERRQ(ierr);
152b4319ba4SBarry Smith   ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
153b4319ba4SBarry Smith   PetscFunctionReturn(0);
154b4319ba4SBarry Smith }
155b4319ba4SBarry Smith 
156b4319ba4SBarry Smith #undef __FUNCT__
157b4319ba4SBarry Smith #define __FUNCT__ "MatSetLocalToGlobalMapping_IS"
158dfbe8321SBarry Smith PetscErrorCode MatSetLocalToGlobalMapping_IS(Mat A,ISLocalToGlobalMapping mapping)
159b4319ba4SBarry Smith {
160dfbe8321SBarry Smith   PetscErrorCode ierr;
16113f74950SBarry Smith   PetscInt       n;
162b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
163b4319ba4SBarry Smith   IS             from,to;
164b4319ba4SBarry Smith   Vec            global;
165b4319ba4SBarry Smith 
166b4319ba4SBarry Smith   PetscFunctionBegin;
167e7e72b3dSBarry Smith   if (is->mapping) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Mapping already set for matrix");
1682e74eeadSLisandro Dalcin   PetscCheckSameComm(A,1,mapping,2);
169b4319ba4SBarry Smith   ierr = PetscObjectReference((PetscObject)mapping);CHKERRQ(ierr);
170c3122656SLisandro Dalcin   if (is->mapping) { ierr = ISLocalToGlobalMappingDestroy(is->mapping);CHKERRQ(ierr); }
171c3122656SLisandro Dalcin   is->mapping = mapping;
172b4319ba4SBarry Smith 
173b4319ba4SBarry Smith   /* Create the local matrix A */
174b4319ba4SBarry Smith   ierr = ISLocalToGlobalMappingGetSize(mapping,&n);CHKERRQ(ierr);
175f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&is->A);CHKERRQ(ierr);
176f69a0ea3SMatthew Knepley   ierr = MatSetSizes(is->A,n,n,n,n);CHKERRQ(ierr);
1772e74eeadSLisandro Dalcin   ierr = MatSetOptionsPrefix(is->A,"is");CHKERRQ(ierr);
178b4319ba4SBarry Smith   ierr = MatSetFromOptions(is->A);CHKERRQ(ierr);
179b4319ba4SBarry Smith 
180b4319ba4SBarry Smith   /* Create the local work vectors */
181b4319ba4SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,n,&is->x);CHKERRQ(ierr);
182b4319ba4SBarry Smith   ierr = VecDuplicate(is->x,&is->y);CHKERRQ(ierr);
183b4319ba4SBarry Smith 
184b4319ba4SBarry Smith   /* setup the global to local scatter */
185b4319ba4SBarry Smith   ierr = ISCreateStride(PETSC_COMM_SELF,n,0,1,&to);CHKERRQ(ierr);
186b4319ba4SBarry Smith   ierr = ISLocalToGlobalMappingApplyIS(mapping,to,&from);CHKERRQ(ierr);
187d0f46423SBarry Smith   ierr = VecCreateMPIWithArray(((PetscObject)A)->comm,A->cmap->n,A->cmap->N,PETSC_NULL,&global);CHKERRQ(ierr);
188b4319ba4SBarry Smith   ierr = VecScatterCreate(global,from,is->x,to,&is->ctx);CHKERRQ(ierr);
189b4319ba4SBarry Smith   ierr = VecDestroy(global);CHKERRQ(ierr);
190b4319ba4SBarry Smith   ierr = ISDestroy(to);CHKERRQ(ierr);
191b4319ba4SBarry Smith   ierr = ISDestroy(from);CHKERRQ(ierr);
192b4319ba4SBarry Smith   PetscFunctionReturn(0);
193b4319ba4SBarry Smith }
194b4319ba4SBarry Smith 
1952e74eeadSLisandro Dalcin #define ISG2LMapApply(mapping,n,in,out) 0;\
1962e74eeadSLisandro Dalcin   if (!(mapping)->globals) {\
1972e74eeadSLisandro Dalcin    PetscErrorCode _ierr = ISGlobalToLocalMappingApply((mapping),IS_GTOLM_MASK,0,0,0,0);CHKERRQ(_ierr);\
1982e74eeadSLisandro Dalcin   }\
1992e74eeadSLisandro Dalcin   {\
2002e74eeadSLisandro Dalcin     PetscInt _i,*_globals = (mapping)->globals,_start = (mapping)->globalstart,_end = (mapping)->globalend;\
2012e74eeadSLisandro Dalcin     for (_i=0; _i<n; _i++) {\
2022e74eeadSLisandro Dalcin       if (in[_i] < 0)           out[_i] = in[_i];\
2032e74eeadSLisandro Dalcin       else if (in[_i] < _start) out[_i] = -1;\
2042e74eeadSLisandro Dalcin       else if (in[_i] > _end)   out[_i] = -1;\
2052e74eeadSLisandro Dalcin       else                      out[_i] = _globals[in[_i] - _start];\
2062e74eeadSLisandro Dalcin     }\
2072e74eeadSLisandro Dalcin   }
2082e74eeadSLisandro Dalcin 
2092e74eeadSLisandro Dalcin #undef __FUNCT__
2102e74eeadSLisandro Dalcin #define __FUNCT__ "MatSetValues_IS"
2112e74eeadSLisandro Dalcin PetscErrorCode MatSetValues_IS(Mat mat, PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols, const PetscScalar *values, InsertMode addv)
2122e74eeadSLisandro Dalcin {
2132e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)mat->data;
2142e74eeadSLisandro Dalcin   PetscInt       rows_l[2048],cols_l[2048];
2152e74eeadSLisandro Dalcin   PetscErrorCode ierr;
2162e74eeadSLisandro Dalcin 
2172e74eeadSLisandro Dalcin   PetscFunctionBegin;
2182e74eeadSLisandro Dalcin #if defined(PETSC_USE_DEBUG)
2192e74eeadSLisandro Dalcin   if (m > 2048 || n > 2048) {
220e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of row/column indices must be <= 2048: they are %D %D",m,n);
2212e74eeadSLisandro Dalcin   }
2222e74eeadSLisandro Dalcin #endif
2232e74eeadSLisandro Dalcin   ierr = ISG2LMapApply(is->mapping,m,rows,rows_l);CHKERRQ(ierr);
2242e74eeadSLisandro Dalcin   ierr = ISG2LMapApply(is->mapping,n,cols,cols_l);CHKERRQ(ierr);
2252e74eeadSLisandro Dalcin   ierr = MatSetValues(is->A,m,rows_l,n,cols_l,values,addv);CHKERRQ(ierr);
2262e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
2272e74eeadSLisandro Dalcin }
2282e74eeadSLisandro Dalcin 
2292e74eeadSLisandro Dalcin #undef ISG2LMapSetUp
2302e74eeadSLisandro Dalcin #undef ISG2LMapApply
231b4319ba4SBarry Smith 
232b4319ba4SBarry Smith #undef __FUNCT__
233b4319ba4SBarry Smith #define __FUNCT__ "MatSetValuesLocal_IS"
23413f74950SBarry Smith PetscErrorCode MatSetValuesLocal_IS(Mat A,PetscInt m,const PetscInt *rows, PetscInt n,const PetscInt *cols,const PetscScalar *values,InsertMode addv)
235b4319ba4SBarry Smith {
236dfbe8321SBarry Smith   PetscErrorCode ierr;
237b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
238b4319ba4SBarry Smith 
239b4319ba4SBarry Smith   PetscFunctionBegin;
240b4319ba4SBarry Smith   ierr = MatSetValues(is->A,m,rows,n,cols,values,addv);CHKERRQ(ierr);
241b4319ba4SBarry Smith   PetscFunctionReturn(0);
242b4319ba4SBarry Smith }
243b4319ba4SBarry Smith 
244b4319ba4SBarry Smith #undef __FUNCT__
2452e74eeadSLisandro Dalcin #define __FUNCT__ "MatZeroRows_IS"
246*2b40b63fSBarry Smith PetscErrorCode MatZeroRows_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
2472e74eeadSLisandro Dalcin {
2482e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
2492e74eeadSLisandro Dalcin   PetscInt       n_l=0, *rows_l = PETSC_NULL;
2502e74eeadSLisandro Dalcin   PetscErrorCode ierr;
2512e74eeadSLisandro Dalcin 
2522e74eeadSLisandro Dalcin   PetscFunctionBegin;
2532e74eeadSLisandro Dalcin   if (n) {
2542e74eeadSLisandro Dalcin     ierr = PetscMalloc(n*sizeof(PetscInt),&rows_l);CHKERRQ(ierr);
2552e74eeadSLisandro Dalcin     ierr = ISGlobalToLocalMappingApply(is->mapping,IS_GTOLM_DROP,n,rows,&n_l,rows_l);CHKERRQ(ierr);
2562e74eeadSLisandro Dalcin   }
257*2b40b63fSBarry Smith   ierr = MatZeroRowsLocal(A,n_l,rows_l,diag,x,b);CHKERRQ(ierr);
2582e74eeadSLisandro Dalcin   if (rows_l) { ierr = PetscFree(rows_l);CHKERRQ(ierr); }
2592e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
2602e74eeadSLisandro Dalcin }
2612e74eeadSLisandro Dalcin 
2622e74eeadSLisandro Dalcin #undef __FUNCT__
263b4319ba4SBarry Smith #define __FUNCT__ "MatZeroRowsLocal_IS"
264*2b40b63fSBarry Smith PetscErrorCode MatZeroRowsLocal_IS(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
265b4319ba4SBarry Smith {
266b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
267dfbe8321SBarry Smith   PetscErrorCode ierr;
268f4df32b1SMatthew Knepley   PetscInt       i;
269b4319ba4SBarry Smith   PetscScalar    *array;
270b4319ba4SBarry Smith 
271b4319ba4SBarry Smith   PetscFunctionBegin;
272b4319ba4SBarry Smith   {
273b4319ba4SBarry Smith     /*
274b4319ba4SBarry Smith        Set up is->x as a "counting vector". This is in order to MatMult_IS
275b4319ba4SBarry Smith        work properly in the interface nodes.
276b4319ba4SBarry Smith     */
277b4319ba4SBarry Smith     Vec         counter;
278b4319ba4SBarry Smith     PetscScalar one=1.0, zero=0.0;
279d0f46423SBarry Smith     ierr = VecCreateMPI(((PetscObject)A)->comm,A->cmap->n,A->cmap->N,&counter);CHKERRQ(ierr);
2802dcb1b2aSMatthew Knepley     ierr = VecSet(counter,zero);CHKERRQ(ierr);
2812dcb1b2aSMatthew Knepley     ierr = VecSet(is->x,one);CHKERRQ(ierr);
282ca9f406cSSatish Balay     ierr = VecScatterBegin(is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
283ca9f406cSSatish Balay     ierr = VecScatterEnd  (is->ctx,is->x,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
284ca9f406cSSatish Balay     ierr = VecScatterBegin(is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
285ca9f406cSSatish Balay     ierr = VecScatterEnd  (is->ctx,counter,is->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
286b4319ba4SBarry Smith     ierr = VecDestroy(counter);CHKERRQ(ierr);
287b4319ba4SBarry Smith   }
288958c9bccSBarry Smith   if (!n) {
289b4319ba4SBarry Smith     is->pure_neumann = PETSC_TRUE;
290b4319ba4SBarry Smith   } else {
291b4319ba4SBarry Smith     is->pure_neumann = PETSC_FALSE;
292b4319ba4SBarry Smith     ierr = VecGetArray(is->x,&array);CHKERRQ(ierr);
293*2b40b63fSBarry Smith     ierr = MatZeroRows(is->A,n,rows,diag,0,0);CHKERRQ(ierr);
294b4319ba4SBarry Smith     for (i=0; i<n; i++) {
295f4df32b1SMatthew Knepley       ierr = MatSetValue(is->A,rows[i],rows[i],diag/(array[rows[i]]),INSERT_VALUES);CHKERRQ(ierr);
296b4319ba4SBarry Smith     }
297b4319ba4SBarry Smith     ierr = MatAssemblyBegin(is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
298b4319ba4SBarry Smith     ierr = MatAssemblyEnd  (is->A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
299b4319ba4SBarry Smith     ierr = VecRestoreArray(is->x,&array);CHKERRQ(ierr);
300b4319ba4SBarry Smith   }
301b4319ba4SBarry Smith 
302b4319ba4SBarry Smith   PetscFunctionReturn(0);
303b4319ba4SBarry Smith }
304b4319ba4SBarry Smith 
305b4319ba4SBarry Smith #undef __FUNCT__
306b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyBegin_IS"
307dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_IS(Mat A,MatAssemblyType type)
308b4319ba4SBarry Smith {
309b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
310dfbe8321SBarry Smith   PetscErrorCode ierr;
311b4319ba4SBarry Smith 
312b4319ba4SBarry Smith   PetscFunctionBegin;
313b4319ba4SBarry Smith   ierr = MatAssemblyBegin(is->A,type);CHKERRQ(ierr);
314b4319ba4SBarry Smith   PetscFunctionReturn(0);
315b4319ba4SBarry Smith }
316b4319ba4SBarry Smith 
317b4319ba4SBarry Smith #undef __FUNCT__
318b4319ba4SBarry Smith #define __FUNCT__ "MatAssemblyEnd_IS"
319dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_IS(Mat A,MatAssemblyType type)
320b4319ba4SBarry Smith {
321b4319ba4SBarry Smith   Mat_IS         *is = (Mat_IS*)A->data;
322dfbe8321SBarry Smith   PetscErrorCode ierr;
323b4319ba4SBarry Smith 
324b4319ba4SBarry Smith   PetscFunctionBegin;
325b4319ba4SBarry Smith   ierr = MatAssemblyEnd(is->A,type);CHKERRQ(ierr);
326b4319ba4SBarry Smith   PetscFunctionReturn(0);
327b4319ba4SBarry Smith }
328b4319ba4SBarry Smith 
329b4319ba4SBarry Smith EXTERN_C_BEGIN
330b4319ba4SBarry Smith #undef __FUNCT__
331b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat_IS"
332be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatISGetLocalMat_IS(Mat mat,Mat *local)
333b4319ba4SBarry Smith {
334b4319ba4SBarry Smith   Mat_IS *is = (Mat_IS *)mat->data;
335b4319ba4SBarry Smith 
336b4319ba4SBarry Smith   PetscFunctionBegin;
337b4319ba4SBarry Smith   *local = is->A;
338b4319ba4SBarry Smith   PetscFunctionReturn(0);
339b4319ba4SBarry Smith }
340b4319ba4SBarry Smith EXTERN_C_END
341b4319ba4SBarry Smith 
342b4319ba4SBarry Smith #undef __FUNCT__
343b4319ba4SBarry Smith #define __FUNCT__ "MatISGetLocalMat"
344b4319ba4SBarry Smith /*@
345b4319ba4SBarry Smith     MatISGetLocalMat - Gets the local matrix stored inside a MATIS matrix.
346b4319ba4SBarry Smith 
347b4319ba4SBarry Smith   Input Parameter:
348b4319ba4SBarry Smith .  mat - the matrix
349b4319ba4SBarry Smith 
350b4319ba4SBarry Smith   Output Parameter:
351b4319ba4SBarry Smith .  local - the local matrix usually MATSEQAIJ
352b4319ba4SBarry Smith 
353b4319ba4SBarry Smith   Level: advanced
354b4319ba4SBarry Smith 
355b4319ba4SBarry Smith   Notes:
356b4319ba4SBarry Smith     This can be called if you have precomputed the nonzero structure of the
357b4319ba4SBarry Smith   matrix and want to provide it to the inner matrix object to improve the performance
358b4319ba4SBarry Smith   of the MatSetValues() operation.
359b4319ba4SBarry Smith 
360b4319ba4SBarry Smith .seealso: MATIS
361b4319ba4SBarry Smith @*/
362be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatISGetLocalMat(Mat mat,Mat *local)
363b4319ba4SBarry Smith {
3644ac538c5SBarry Smith   PetscErrorCode ierr;
365b4319ba4SBarry Smith 
366b4319ba4SBarry Smith   PetscFunctionBegin;
3670700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
368b4319ba4SBarry Smith   PetscValidPointer(local,2);
3694ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatISGetLocalMat_C",(Mat,Mat *),(mat,local));CHKERRQ(ierr);
370b4319ba4SBarry Smith   PetscFunctionReturn(0);
371b4319ba4SBarry Smith }
372b4319ba4SBarry Smith 
3736726f965SBarry Smith #undef __FUNCT__
3746726f965SBarry Smith #define __FUNCT__ "MatZeroEntries_IS"
3756726f965SBarry Smith PetscErrorCode MatZeroEntries_IS(Mat A)
3766726f965SBarry Smith {
3776726f965SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
3786726f965SBarry Smith   PetscErrorCode ierr;
3796726f965SBarry Smith 
3806726f965SBarry Smith   PetscFunctionBegin;
3816726f965SBarry Smith   ierr = MatZeroEntries(a->A);CHKERRQ(ierr);
3826726f965SBarry Smith   PetscFunctionReturn(0);
3836726f965SBarry Smith }
3846726f965SBarry Smith 
3856726f965SBarry Smith #undef __FUNCT__
3862e74eeadSLisandro Dalcin #define __FUNCT__ "MatScale_IS"
3872e74eeadSLisandro Dalcin PetscErrorCode MatScale_IS(Mat A,PetscScalar a)
3882e74eeadSLisandro Dalcin {
3892e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
3902e74eeadSLisandro Dalcin   PetscErrorCode ierr;
3912e74eeadSLisandro Dalcin 
3922e74eeadSLisandro Dalcin   PetscFunctionBegin;
3932e74eeadSLisandro Dalcin   ierr = MatScale(is->A,a);CHKERRQ(ierr);
3942e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
3952e74eeadSLisandro Dalcin }
3962e74eeadSLisandro Dalcin 
3972e74eeadSLisandro Dalcin #undef __FUNCT__
3982e74eeadSLisandro Dalcin #define __FUNCT__ "MatGetDiagonal_IS"
3992e74eeadSLisandro Dalcin PetscErrorCode MatGetDiagonal_IS(Mat A, Vec v)
4002e74eeadSLisandro Dalcin {
4012e74eeadSLisandro Dalcin   Mat_IS         *is = (Mat_IS*)A->data;
4022e74eeadSLisandro Dalcin   PetscErrorCode ierr;
4032e74eeadSLisandro Dalcin 
4042e74eeadSLisandro Dalcin   PetscFunctionBegin;
4052e74eeadSLisandro Dalcin   /* get diagonal of the local matrix */
4062e74eeadSLisandro Dalcin   ierr = MatGetDiagonal(is->A,is->x);CHKERRQ(ierr);
4072e74eeadSLisandro Dalcin 
4082e74eeadSLisandro Dalcin   /* scatter diagonal back into global vector */
4092e74eeadSLisandro Dalcin   ierr = VecSet(v,0);CHKERRQ(ierr);
410ca9f406cSSatish Balay   ierr = VecScatterBegin(is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
411ca9f406cSSatish Balay   ierr = VecScatterEnd  (is->ctx,is->x,v,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4122e74eeadSLisandro Dalcin   PetscFunctionReturn(0);
4132e74eeadSLisandro Dalcin }
4142e74eeadSLisandro Dalcin 
4152e74eeadSLisandro Dalcin #undef __FUNCT__
4166726f965SBarry Smith #define __FUNCT__ "MatSetOption_IS"
417ace3abfcSBarry Smith PetscErrorCode MatSetOption_IS(Mat A,MatOption op,PetscBool  flg)
4186726f965SBarry Smith {
4196726f965SBarry Smith   Mat_IS         *a = (Mat_IS*)A->data;
4206726f965SBarry Smith   PetscErrorCode ierr;
4216726f965SBarry Smith 
4226726f965SBarry Smith   PetscFunctionBegin;
4234e0d8c25SBarry Smith   ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
4246726f965SBarry Smith   PetscFunctionReturn(0);
4256726f965SBarry Smith }
4266726f965SBarry Smith 
427284134d9SBarry Smith #undef __FUNCT__
428284134d9SBarry Smith #define __FUNCT__ "MatCreateIS"
429284134d9SBarry Smith /*@
430284134d9SBarry Smith     MatCreateIS - Creates a "process" unassmembled matrix, it is assembled on each
431284134d9SBarry Smith        process but not across processes.
432284134d9SBarry Smith 
433284134d9SBarry Smith    Input Parameters:
434284134d9SBarry Smith +     comm - MPI communicator that will share the matrix
435284134d9SBarry Smith .     m,n,M,N - local and/or global sizes of the the left and right vector used in matrix vector products
436284134d9SBarry Smith -     map - mapping that defines the global number for each local number
437284134d9SBarry Smith 
438284134d9SBarry Smith    Output Parameter:
439284134d9SBarry Smith .    A - the resulting matrix
440284134d9SBarry Smith 
4418e6c10adSSatish Balay    Level: advanced
4428e6c10adSSatish Balay 
443284134d9SBarry Smith    Notes: See MATIS for more details
4448cda6cd7SBarry Smith           m and n are NOT related to the size of the map, they are the size of the part of the vector owned
4458cda6cd7SBarry Smith           by that process. m + nghosts (or n + nghosts) is the length of map since map maps all local points
4468cda6cd7SBarry Smith           plus the ghost points to global indices.
447284134d9SBarry Smith 
448284134d9SBarry Smith .seealso: MATIS, MatSetLocalToGlobalMapping()
449284134d9SBarry Smith @*/
450284134d9SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatCreateIS(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,ISLocalToGlobalMapping map,Mat *A)
451284134d9SBarry Smith {
452284134d9SBarry Smith   PetscErrorCode ierr;
453284134d9SBarry Smith 
454284134d9SBarry Smith   PetscFunctionBegin;
455284134d9SBarry Smith   ierr = MatCreate(comm,A);CHKERRQ(ierr);
456284134d9SBarry Smith   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
457284134d9SBarry Smith   ierr = MatSetType(*A,MATIS);CHKERRQ(ierr);
458284134d9SBarry Smith   ierr = MatSetLocalToGlobalMapping(*A,map);CHKERRQ(ierr);
459284134d9SBarry Smith   PetscFunctionReturn(0);
460284134d9SBarry Smith }
461284134d9SBarry Smith 
462b4319ba4SBarry Smith /*MC
463b4319ba4SBarry Smith    MATIS - MATIS = "is" - A matrix type to be used for using the Neumann-Neumann type preconditioners.
464b4319ba4SBarry Smith    This stores the matrices in globally unassembled form. Each processor
465b4319ba4SBarry Smith    assembles only its local Neumann problem and the parallel matrix vector
466b4319ba4SBarry Smith    product is handled "implicitly".
467b4319ba4SBarry Smith 
468b4319ba4SBarry Smith    Operations Provided:
4696726f965SBarry Smith +  MatMult()
4702e74eeadSLisandro Dalcin .  MatMultAdd()
4712e74eeadSLisandro Dalcin .  MatMultTranspose()
4722e74eeadSLisandro Dalcin .  MatMultTransposeAdd()
4736726f965SBarry Smith .  MatZeroEntries()
4746726f965SBarry Smith .  MatSetOption()
4752e74eeadSLisandro Dalcin .  MatZeroRows()
4766726f965SBarry Smith .  MatZeroRowsLocal()
4772e74eeadSLisandro Dalcin .  MatSetValues()
4786726f965SBarry Smith .  MatSetValuesLocal()
4792e74eeadSLisandro Dalcin .  MatScale()
4802e74eeadSLisandro Dalcin .  MatGetDiagonal()
4816726f965SBarry Smith -  MatSetLocalToGlobalMapping()
482b4319ba4SBarry Smith 
483b4319ba4SBarry Smith    Options Database Keys:
484b4319ba4SBarry Smith . -mat_type is - sets the matrix type to "is" during a call to MatSetFromOptions()
485b4319ba4SBarry Smith 
486b4319ba4SBarry Smith    Notes: Options prefix for the inner matrix are given by -is_mat_xxx
487b4319ba4SBarry Smith 
488b4319ba4SBarry Smith           You must call MatSetLocalToGlobalMapping() before using this matrix type.
489b4319ba4SBarry Smith 
490b4319ba4SBarry Smith           You can do matrix preallocation on the local matrix after you obtain it with
491b4319ba4SBarry Smith           MatISGetLocalMat()
492b4319ba4SBarry Smith 
493b4319ba4SBarry Smith   Level: advanced
494b4319ba4SBarry Smith 
495b4319ba4SBarry Smith .seealso: PC, MatISGetLocalMat(), MatSetLocalToGlobalMapping()
496b4319ba4SBarry Smith 
497b4319ba4SBarry Smith M*/
498b4319ba4SBarry Smith 
499b4319ba4SBarry Smith EXTERN_C_BEGIN
500b4319ba4SBarry Smith #undef __FUNCT__
501b4319ba4SBarry Smith #define __FUNCT__ "MatCreate_IS"
502be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_IS(Mat A)
503b4319ba4SBarry Smith {
504dfbe8321SBarry Smith   PetscErrorCode ierr;
505b4319ba4SBarry Smith   Mat_IS         *b;
506b4319ba4SBarry Smith 
507b4319ba4SBarry Smith   PetscFunctionBegin;
50838f2d2fdSLisandro Dalcin   ierr                = PetscNewLog(A,Mat_IS,&b);CHKERRQ(ierr);
509b4319ba4SBarry Smith   A->data             = (void*)b;
510b4319ba4SBarry Smith   ierr = PetscMemzero(A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
511b4319ba4SBarry Smith   A->mapping          = 0;
512b4319ba4SBarry Smith 
513b4319ba4SBarry Smith   A->ops->mult                    = MatMult_IS;
5142e74eeadSLisandro Dalcin   A->ops->multadd                 = MatMultAdd_IS;
5152e74eeadSLisandro Dalcin   A->ops->multtranspose           = MatMultTranspose_IS;
5162e74eeadSLisandro Dalcin   A->ops->multtransposeadd        = MatMultTransposeAdd_IS;
517b4319ba4SBarry Smith   A->ops->destroy                 = MatDestroy_IS;
518b4319ba4SBarry Smith   A->ops->setlocaltoglobalmapping = MatSetLocalToGlobalMapping_IS;
5192e74eeadSLisandro Dalcin   A->ops->setvalues               = MatSetValues_IS;
520b4319ba4SBarry Smith   A->ops->setvalueslocal          = MatSetValuesLocal_IS;
5212e74eeadSLisandro Dalcin   A->ops->zerorows                = MatZeroRows_IS;
522b4319ba4SBarry Smith   A->ops->zerorowslocal           = MatZeroRowsLocal_IS;
523b4319ba4SBarry Smith   A->ops->assemblybegin           = MatAssemblyBegin_IS;
524b4319ba4SBarry Smith   A->ops->assemblyend             = MatAssemblyEnd_IS;
525b4319ba4SBarry Smith   A->ops->view                    = MatView_IS;
5266726f965SBarry Smith   A->ops->zeroentries             = MatZeroEntries_IS;
5272e74eeadSLisandro Dalcin   A->ops->scale                   = MatScale_IS;
5282e74eeadSLisandro Dalcin   A->ops->getdiagonal             = MatGetDiagonal_IS;
5296726f965SBarry Smith   A->ops->setoption               = MatSetOption_IS;
530b4319ba4SBarry Smith 
53126283091SBarry Smith   ierr = PetscLayoutSetBlockSize(A->rmap,1);CHKERRQ(ierr);
53226283091SBarry Smith   ierr = PetscLayoutSetBlockSize(A->cmap,1);CHKERRQ(ierr);
53326283091SBarry Smith   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
53426283091SBarry Smith   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
535b4319ba4SBarry Smith 
536b4319ba4SBarry Smith   b->A          = 0;
537b4319ba4SBarry Smith   b->ctx        = 0;
538b4319ba4SBarry Smith   b->x          = 0;
539b4319ba4SBarry Smith   b->y          = 0;
540b4319ba4SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatISGetLocalMat_C","MatISGetLocalMat_IS",MatISGetLocalMat_IS);CHKERRQ(ierr);
54117667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)A,MATIS);CHKERRQ(ierr);
542b4319ba4SBarry Smith 
543b4319ba4SBarry Smith   PetscFunctionReturn(0);
544b4319ba4SBarry Smith }
545b4319ba4SBarry Smith EXTERN_C_END
546